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Volumn 26, Issue 4, 2009, Pages 493-500

RNA-Seq gene expression estimation with read mapping uncertainty

Author keywords

[No Author keywords available]

Indexed keywords

ZEA MAYS;

EID: 77949507153     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp692     Document Type: Article
Times cited : (859)

References (17)
  • 1
    • 13244299605 scopus 로고    scopus 로고
    • Statistical modeling of sequencing errors in SAGE libraries
    • Beissbarth, T. et al. (2004) Statistical modeling of sequencing errors in SAGE libraries. Bioinformatics, 20 (Suppl. 1), i31-i39.
    • (2004) Bioinformatics , vol.20 , Issue.SUPPL. 1
    • Beissbarth, T.1
  • 2
    • 46249103973 scopus 로고    scopus 로고
    • Stem cell transcriptome profiling via massive-scale mRNA sequencing
    • Cloonan, N. et al. (2008) Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat. Methods, 5, 613-619.
    • (2008) Nat. Methods , vol.5 , pp. 613-619
    • Cloonan, N.1
  • 3
    • 0002629270 scopus 로고
    • Maximum likelihood from incomplete data via the EM algorithm
    • Dempster, A.P. et al. (1977) Maximum likelihood from incomplete data via the EM algorithm. J. R. Stat. Soc. Ser. B (Methodol.), 39, 1-38.
    • (1977) J. R. Stat. Soc. Ser. B (Methodol.) , vol.39 , pp. 1-38
    • Dempster, A.P.1
  • 4
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from highthroughput DNA sequencing
    • Dohm, J.C. et al. (2008) Substantial biases in ultra-short read data sets from highthroughput DNA sequencing. Nucleic Acids Res., 36, e105.
    • (2008) Nucleic Acids Res. , vol.36
    • Dohm, J.C.1
  • 5
    • 39149083734 scopus 로고    scopus 로고
    • A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE
    • Faulkner, G.J. et al. (2008) A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE. Genomics, 91, 281-288.
    • (2008) Genomics , vol.91 , pp. 281-288
    • Faulkner, G.J.1
  • 6
    • 33646133653 scopus 로고    scopus 로고
    • The UCSC known genes
    • Hsu, F. et al. (2006) The UCSC known genes. Bioinformatics, 22, 1036-1046.
    • (2006) Bioinformatics , vol.22 , pp. 1036-1046
    • Hsu, F.1
  • 7
    • 64549119707 scopus 로고    scopus 로고
    • Statistical inferences for isoform expression in RNASeq
    • Jiang, H. and Wong, W.H. (2009) Statistical inferences for isoform expression in RNA-Seq. Bioinformatics, 25, 1026-1032.
    • (2009) Bioinformatics , vol.25 , pp. 1026-1032
    • Jiang, H.1    Wong, W.H.2
  • 8
    • 57249116888 scopus 로고    scopus 로고
    • Cross-hybridization modeling on Affymetrix exon arrays
    • Kapur, K. et al. (2008) Cross-hybridization modeling on Affymetrix exon arrays. Bioinformatics, 24, 2887-2893.
    • (2008) Bioinformatics , vol.24 , pp. 2887-2893
    • Kapur, K.1
  • 10
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1
  • 11
    • 42749087226 scopus 로고    scopus 로고
    • Highly integrated single-base resolution maps of the epigenome in Arabidopsis
    • Lister, R. et al. (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell, 133, 523-536.
    • (2008) Cell , vol.133 , pp. 523-536
    • Lister, R.1
  • 12
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni, J.C. et al. (2008) RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays. Genome Res., 18, 1509-1517.
    • (2008) Genome Res. , vol.18 , pp. 1509-1517
    • Marioni, J.C.1
  • 13
    • 47949084846 scopus 로고    scopus 로고
    • Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing
    • Morin, R.D. et al. (2008) Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing. BioTechniques, 45, 81-94.
    • (2008) BioTechniques , vol.45 , pp. 81-94
    • Morin, R.D.1
  • 14
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • Mortazavi, A. et al. (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods, 5, 621-628.
    • (2008) Nat. Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1
  • 15
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • Nagalakshmi, U. et al. (2008) The transcriptional landscape of the yeast genome defined by RNA sequencing. Science, 320, 1344-1349.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1
  • 16
    • 0018426987 scopus 로고
    • A strategy of DNAsequencing employing computer programs
    • Staden, R. (1979)A strategy of DNAsequencing employing computer programs. Nucleic Acids Res., 6, 2601-2610.
    • (1979) Nucleic Acids Res. , vol.6 , pp. 2601-2610
    • Staden, R.1
  • 17
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • Wang, Z. et al. (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet., 10, 57-63.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 57-63
    • Wang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.