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1
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84928922487
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Chloroplasts (plastids), mitochondria, and peroxisomes have commonalties in their proteolytic systems that should be further explored to improve understanding of proteasesubstrate relationships and the coordination of organellar function
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Chloroplasts (plastids), mitochondria, and peroxisomes have commonalties in their proteolytic systems that should be further explored to improve understanding of proteasesubstrate relationships and the coordination of organellar function.
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2
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84928922488
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DEG14 (located in themitochondria) and FTSH11 (located in mitochondria and chloroplasts) confer thermotolerance in Arabidopsis, likely by degrading misfolded proteins. No other organellar proteases are (yet) known to confer thermotolerance
-
DEG14 (located in themitochondria) and FTSH11 (located in mitochondria and chloroplasts) confer thermotolerance in Arabidopsis, likely by degrading misfolded proteins. No other organellar proteases are (yet) known to confer thermotolerance.
-
-
-
-
5
-
-
84928922491
-
Organellar proteolysis and autophagy have been studiedmainly in Arabidopsis, but several recent studies have illustrated the importance of organellar proteases and autophagy in crop plants
-
Organellar proteolysis and autophagy have been studiedmainly in Arabidopsis, but several recent studies have illustrated the importance of organellar proteases and autophagy in crop plants. These findings could potentially have a large impact on agriculture.
-
These Findings Could Potentially Have A Large Impact on Agriculture
-
-
-
7
-
-
84885113180
-
Emerging roles for diverse intramembrane proteases in plant biology
-
Adam Z. 2013 . Emerging roles for diverse intramembrane proteases in plant biology. Biochim. Biophys. Acta 1828:2933-36
-
(2013)
Biochim. Biophys. Acta
, vol.1828
, pp. 2933-2936
-
-
Adam, Z.1
-
8
-
-
84864279894
-
New lives for old: Evolution of pseudoenzyme function illustrated by iRhoms
-
Adrain C, Freeman M. 2012. New lives for old: evolution of pseudoenzyme function illustrated by iRhoms. Nat. Rev. Mol. Cell Biol. 13:489-98
-
(2012)
Nat. Rev. Mol. Cell Biol.
, vol.13
, pp. 489-498
-
-
Adrain, C.1
Freeman, M.2
-
9
-
-
70549111633
-
Methods for the proteomic identification of protease substrates
-
Agard NJ, Wells JA. 2009. Methods for the proteomic identification of protease substrates. Curr. Opin. Chem. Biol. 13:503-9
-
(2009)
Curr. Opin. Chem. Biol.
, vol.13
, pp. 503-509
-
-
Agard, N.J.1
Wells, J.A.2
-
10
-
-
84885216661
-
A novel proteinase, SNOWY COTYLEDON4, is required for photosynthetic acclimation to higher light intensities in Arabidopsis
-
Albrecht-Borth V, Kauss D, Fan D, Hu Y, Collinge D, et al. 2013. A novel proteinase, SNOWY COTYLEDON4, is required for photosynthetic acclimation to higher light intensities in Arabidopsis. Plant Physiol. 163:732-45
-
(2013)
Plant Physiol.
, vol.163
, pp. 732-745
-
-
Albrecht-Borth, V.1
Kauss, D.2
Fan, D.3
Hu, Y.4
Collinge, D.5
-
11
-
-
77955686870
-
Identification of protein stability determinants in chloroplasts
-
Apel W, Schulze WX, Bock R. 2010. Identification of protein stability determinants in chloroplasts. Plant J. 63:636-50
-
(2010)
Plant J.
, vol.63
, pp. 636-650
-
-
Apel, W.1
Schulze, W.X.2
Bock, R.3
-
12
-
-
84904964881
-
Leaf senescence and nitrogen remobilization efficiency in oilseed rape (Brassica napus L)
-
Avice JC,Etienne P. 2014. Leaf senescence and nitrogen remobilization efficiency in oilseed rape (Brassica napus L.). J. Exp. Bot. 65:3813-24
-
(2014)
J. Exp. Bot.
, vol.65
, pp. 3813-3824
-
-
Avice, J.C.1
Etienne, P.2
-
13
-
-
84904988777
-
Autophagy, plant senescence, and nutrient recycling
-
Avila-Ospina L, Moison M, Yoshimoto K, Masclaux-Daubresse C. 2014. Autophagy, plant senescence, and nutrient recycling. J. Exp. Bot. 65:3799-811
-
(2014)
J. Exp. Bot.
, vol.65
, pp. 3799-3811
-
-
Avila-Ospina, L.1
Moison, M.2
Yoshimoto, K.3
Masclaux-Daubresse, C.4
-
14
-
-
84906258217
-
At long last: Evidence for pexophagy in plants
-
Avin-Wittenberg T, Fernie AR. 2014. At long last: evidence for pexophagy in plants. Mol. Plant 7:1257-60
-
(2014)
Mol. Plant
, vol.7
, pp. 1257-1260
-
-
Avin-Wittenberg, T.1
Fernie, A.R.2
-
15
-
-
0023003380
-
In vivo half-life of a protein is a function of its amino-terminal residue
-
Bachmair A, Finley D, Varshavsky A. 1986. In vivo half-life of a protein is a function of its amino-terminal residue. Science 234:179-86
-
(1986)
Science
, vol.234
, pp. 179-186
-
-
Bachmair, A.1
Finley, D.2
Varshavsky, A.3
-
16
-
-
84899464033
-
Degradation of phycobilisomes in Synechocystis sp PCC6803: Evidence for essential formation of an NblA1/NblA2 heterodimer and its codegradation by a Clp protease complex
-
BaierA,WinklerW,KorteT, LockauW,Karradt A. 2014. Degradation of phycobilisomes in Synechocystis sp. PCC6803: evidence for essential formation of an NblA1/NblA2 heterodimer and its codegradation by a Clp protease complex. J. Biol. Chem. 289:11755-66
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 11755-11766
-
-
Baier, A.1
Winkler, W.2
Korte, T.3
Lockau, W.4
Karradt, A.5
-
17
-
-
84871806651
-
Plastid-to-nucleus communication, signals controlling the running of the plant cell
-
Barajas-L ópez JDD, Blanco NE, Strand A. 2013. Plastid-to-nucleus communication, signals controlling the running of the plant cell. Biochim. Biophys. Acta 1833:425-37
-
(2013)
Biochim. Biophys. Acta
, vol.1833
, pp. 425-437
-
-
Barajas-López, J.D.D.1
Blanco, N.E.2
Strand, A.3
-
18
-
-
84863691652
-
Altered chloroplast development and delayed fruit ripening caused bymutations in a zincmetalloprotease at the lutescent2 locus of tomato
-
Barry CS, Aldridge GM, Herzog G, Ma Q, McQuinn RP, et al. 2012. Altered chloroplast development and delayed fruit ripening caused bymutations in a zincmetalloprotease at the lutescent2 locus of tomato. Plant Physiol. 159:1086-98
-
(2012)
Plant Physiol.
, vol.159
, pp. 1086-1098
-
-
Barry, C.S.1
Aldridge, G.M.2
Herzog, G.3
Ma, Q.4
McQuinn, R.P.5
-
19
-
-
84896967355
-
Mutation of the Arabidopsis LON2 peroxisomal protease enhances pexophagy
-
Bartel B, FarmerLM,RinaldiMA, YoungPG, DananCH, Burkhart SE. 2014. Mutation of the Arabidopsis LON2 peroxisomal protease enhances pexophagy. Autophagy 10:518-19
-
(2014)
Autophagy
, vol.10
, pp. 518-519
-
-
Bartel, B.1
Farmer, L.M.2
Rinaldi, M.A.3
Young, P.G.4
Danan, C.H.5
Burkhart, S.E.6
-
20
-
-
84901450820
-
Arabidopsis AtPARK13, which confers thermotolerance, targets misfolded proteins
-
Basak I, Pal R, Patil KS, Dunne A, Ho HP, et al. 2014. Arabidopsis AtPARK13, which confers thermotolerance, targets misfolded proteins. J. Biol. Chem. 289:14458-69
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 14458-14469
-
-
Basak, I.1
Pal, R.2
Patil, K.S.3
Dunne, A.4
Ho, H.P.5
-
21
-
-
84859152796
-
Dual targeting of a processing peptidase into both endosymbiotic organelles mediated by a transport signal of unusual architecture
-
Baudisch B, Klosgen RB. 2012. Dual targeting of a processing peptidase into both endosymbiotic organelles mediated by a transport signal of unusual architecture. Mol. Plant 5:494-503
-
(2012)
Mol. Plant
, vol.5
, pp. 494-503
-
-
Baudisch, B.1
Klosgen, R.B.2
-
23
-
-
31544450017
-
A chloroplastic inner envelope membrane protease is essential for plant development
-
Bolter B, Nada A, FulgosiH, Soll J. 2006. A chloroplastic inner envelope membrane protease is essential for plant development. FEBS Lett. 580:789-94
-
(2006)
FEBS Lett.
, vol.580
, pp. 789-794
-
-
Bolter, B.1
Nada, A.2
Fulgosi, H.3
Soll, J.4
-
24
-
-
84862187624
-
ChloroplasticHsp100 chaperones ClpC2 and ClpD interact in vitro with a transit peptide only when it is located at the N-terminus of a protein
-
BruchEM,Rosano GL,Ceccarelli EA. 2012. ChloroplasticHsp100 chaperones ClpC2 and ClpD interact in vitro with a transit peptide only when it is located at the N-terminus of a protein. BMC Plant Biol. 12:57
-
(2012)
BMC Plant Biol.
, vol.12
, pp. 57
-
-
Bruch, E.M.1
Rosano, G.L.2
Ceccarelli, E.A.3
-
25
-
-
84871743525
-
Genetic dissection of peroxisome-associated matrix protein degradation in Arabidopsis thaliana
-
Burkhart SE, Lingard MJ, Bartel B. 2013. Genetic dissection of peroxisome-associated matrix protein degradation in Arabidopsis thaliana. Genetics 193:125-41
-
(2013)
Genetics
, vol.193
, pp. 125-141
-
-
Burkhart, S.E.1
Lingard, M.J.2
Bartel, B.3
-
26
-
-
84896733279
-
Mitochondrial dismissal in mammals, from protein degradation to mitophagy
-
Campello S, Strappazzon F, Cecconi F. 2014. Mitochondrial dismissal in mammals, from protein degradation to mitophagy. Biochim. Biophys. Acta 1837:451-60
-
(2014)
Biochim. Biophys. Acta
, vol.1837
, pp. 451-460
-
-
Campello, S.1
Strappazzon, F.2
Cecconi, F.3
-
27
-
-
84873081591
-
-
Carrie C, Murcha MW, Giraud E, Ng S, Zhang MF, et al. 2013. How do plants make mitochondria? Planta 237:429-39
-
(2013)
How do plants make mitochondria? Planta 237:429-39
-
-
Carrie, C.1
Murcha, M.W.2
Giraud, E.3
Ng, S.4
Zhang, M.F.5
-
28
-
-
84871779194
-
A reevaluation of dual-targeting of proteins to mitochondria and chloroplasts
-
Carrie C, Small I. 2013. A reevaluation of dual-targeting of proteins to mitochondria and chloroplasts. Biochim. Biophys. Acta 1833:253-59
-
(2013)
Biochim. Biophys. Acta
, vol.1833
, pp. 253-259
-
-
Carrie, C.1
Small, I.2
-
29
-
-
84891882709
-
In vivo inhibition of cysteine proteases provides evidence for the involvement of "senescence-associated vacuoles" in chloroplast protein degradation during dark-induced senescence of tobacco leaves
-
Carrion CA, Costa ML,MartinezDE, Mohr C, Humbeck K,Guiamet JJ. 2013. In vivo inhibition of cysteine proteases provides evidence for the involvement of "senescence-associated vacuoles" in chloroplast protein degradation during dark-induced senescence of tobacco leaves. J. Exp. Bot. 64:4967-80
-
(2013)
J. Exp. Bot.
, vol.64
, pp. 4967-4980
-
-
Carrion, C.A.1
Costa, M.L.2
Martinez, D.E.3
Mohr, C.4
Humbeck, K.5
Guiamet, J.J.6
-
30
-
-
33747051501
-
Expression of the cry9Aa2 Bt gene in tobacco chloroplasts confers resistance to potato tuber moth
-
Chakrabarti SK, Lutz KA, Lertwiriyawong B, Svab Z, Maliga P. 2006. Expression of the cry9Aa2 B.t. gene in tobacco chloroplasts confers resistance to potato tuber moth. Transgenic Res. 15:481-88
-
(2006)
Transgenic Res.
, vol.15
, pp. 481-488
-
-
Chakrabarti, S.K.1
Lutz, K.A.2
Lertwiriyawong, B.3
Svab, Z.4
Maliga, P.5
-
31
-
-
84885044124
-
C-terminal processing of reaction center protein D1 is essential for the function and assembly of photosystem II in Arabidopsis
-
Che Y, Fu A, Hou X, McDonald K, Buchanan BB, et al. 2013. C-terminal processing of reaction center protein D1 is essential for the function and assembly of photosystem II in Arabidopsis. PNAS 110:16247-52
-
(2013)
PNAS
, vol.110
, pp. 16247-16252
-
-
Che, Y.1
Fu, A.2
Hou, X.3
McDonald, K.4
Buchanan, B.B.5
-
32
-
-
13844286019
-
EGY1 encodes a membrane-associated and ATP-independent metalloprotease that is required for chloroplast development
-
Chen G, Bi YR, Li N. 2005. EGY1 encodes a membrane-associated and ATP-independent metalloprotease that is required for chloroplast development. Plant J. 41:364-75
-
(2005)
Plant J.
, vol.41
, pp. 364-375
-
-
Chen, G.1
Bi, Y.R.2
Li, N.3
-
33
-
-
84863649101
-
EGY2, a chloroplast membrane metalloprotease, plays a role in hypocotyl elongation in Arabidopsis
-
Chen G, Law K, Ho P, Zhang X, Li N. 2012. EGY2, a chloroplast membrane metalloprotease, plays a role in hypocotyl elongation in Arabidopsis. Mol. Biol. Rep. 39:2147-55
-
(2012)
Mol. Biol. Rep.
, vol.39
, pp. 2147-2155
-
-
Chen, G.1
Law, K.2
Ho, P.3
Zhang, X.4
Li, N.5
-
34
-
-
33748632913
-
FtsH11 protease plays a critical role in Arabidopsis thermotolerance
-
Chen J, Burke JJ, Velten J, Xin Z. 2006. FtsH11 protease plays a critical role in Arabidopsis thermotolerance. Plant J. 48:73-84
-
(2006)
Plant J.
, vol.48
, pp. 73-84
-
-
Chen, J.1
Burke, J.J.2
Velten, J.3
Xin, Z.4
-
35
-
-
82755193828
-
The roles of chloroplast proteases in the biogenesis and maintenance of photosystem II
-
ChiW, Sun X, Zhang L. 2012. The roles of chloroplast proteases in the biogenesis and maintenance of photosystem II. Biochim. Biophys. Acta 1817:239-46
-
(2012)
Biochim. Biophys. Acta
, vol.1817
, pp. 239-246
-
-
Chi, W.1
Sun, X.2
Zhang, L.3
-
36
-
-
84859340828
-
The amino-terminal domain of chloroplastHsp93 is important for its membrane association and functions in vivo
-
Chu CC, Li HM. 2012. The amino-terminal domain of chloroplastHsp93 is important for its membrane association and functions in vivo. Plant Physiol. 158:1656-65
-
(2012)
Plant Physiol.
, vol.158
, pp. 1656-1665
-
-
Chu, C.C.1
Li, H.M.2
-
37
-
-
58449118073
-
The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability
-
Chung T, Suttangkakul A, Vierstra RD. 2009. The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability. Plant Physiol. 149:220-34
-
(2009)
Plant Physiol.
, vol.149
, pp. 220-234
-
-
Chung, T.1
Suttangkakul, A.2
Vierstra, R.D.3
-
38
-
-
84859848962
-
The chloroplast ATP-dependent Clp protease in vascular plants-new dimensions and future challenges
-
Clarke AK. 2012. The chloroplast ATP-dependent Clp protease in vascular plants-new dimensions and future challenges. Physiol. Plant. 145:235-44
-
(2012)
Physiol. Plant.
, vol.145
, pp. 235-244
-
-
Clarke, A.K.1
-
39
-
-
84870676972
-
Proteome dynamics: Revisiting turnover with a global perspective
-
Claydon AJ, Beynon R. 2012. Proteome dynamics: revisiting turnover with a global perspective. Mol. Cell. Proteomics 11:1551-65
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 1551-1565
-
-
Claydon, A.J.1
Beynon, R.2
-
40
-
-
84901017612
-
Alternative transcription initiation and the AUG context configuration control dual-organellar targeting and functional competence of Arabidopsis Lon1 protease
-
Daras G, Rigas S, Tsitsekian D, Zur H, Tuller T, Hatzopoulos P. 2014. Alternative transcription initiation and the AUG context configuration control dual-organellar targeting and functional competence of Arabidopsis Lon1 protease. Mol. Plant 7:989-1005
-
(2014)
Mol. Plant
, vol.7
, pp. 989-1005
-
-
Daras, G.1
Rigas, S.2
Tsitsekian, D.3
Zur, H.4
Tuller, T.5
Hatzopoulos, P.6
-
41
-
-
84887989620
-
Calmodulin-like protein AtCML3 mediates dimerization of peroxisomal processing protease AtDEG15 and contributes to normal peroxisome metabolism
-
Dolze E, Chigri F, Howing T, Hierl G, Isono E, et al. 2013. Calmodulin-like protein AtCML3 mediates dimerization of peroxisomal processing protease AtDEG15 and contributes to normal peroxisome metabolism. Plant Mol. Biol. 83:607-24
-
(2013)
Plant Mol. Biol.
, vol.83
, pp. 607-624
-
-
Dolze, E.1
Chigri, F.2
Howing, T.3
Hierl, G.4
Isono, E.5
-
42
-
-
84880989890
-
A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants
-
Dong H, Fei GL, Wu CY, Wu FQ, Sun YY, et al. 2013. A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants. Plant Physiol. 162:1867-80
-
(2013)
Plant Physiol.
, vol.162
, pp. 1867-1880
-
-
Dong, H.1
Fei, G.L.2
Wu, C.Y.3
Wu, F.Q.4
Sun, Y.Y.5
-
43
-
-
84855198546
-
The N-end rule pathway: From recognition by Nrecognins, to destruction by AAA+ proteases
-
Dougan DA, Micevski D, Truscott KN. 2012. The N-end rule pathway: from recognition by Nrecognins, to destruction by AAA+ proteases. Biochim. Biophys. Acta 1823:83-91
-
(2012)
Biochim. Biophys. Acta
, vol.1823
, pp. 83-91
-
-
Dougan, D.A.1
Micevski, D.2
Truscott, K.N.3
-
44
-
-
27644474656
-
Metabolic engineering of the mevalonate and non-mevalonate isopentenyl diphosphate-forming pathways for the production of health-promoting isoprenoids in tomato
-
Enfissi EM, Fraser PD, Lois LM, Boronat A, SchuchW, Bramley PM. 2005. Metabolic engineering of the mevalonate and non-mevalonate isopentenyl diphosphate-forming pathways for the production of health-promoting isoprenoids in tomato. Plant Biotechnol. J. 3:17-27
-
(2005)
Plant Biotechnol. J.
, vol.3
, pp. 17-27
-
-
Enfissi, E.M.1
Fraser, P.D.2
Lois, L.M.3
Boronat, A.4
Schuch, W.5
Bramley, P.M.6
-
45
-
-
32544432878
-
ClpS is an essential component of the N-end rule pathway in Escherichia coli
-
Erbse A, Schmidt R, Bornemann T, Schneider-Mergener J, Mogk A, et al. 2006. ClpS is an essential component of the N-end rule pathway in Escherichia coli. Nature 439:753-56
-
(2006)
Nature
, vol.439
, pp. 753-756
-
-
Erbse, A.1
Schmidt, R.2
Bornemann, T.3
Schneider-Mergener, J.4
Mogk, A.5
-
46
-
-
84878221380
-
Reconsidering the nature and mode of action of metabolite retrograde signals from the chloroplast
-
Estavillo GM, Chan KX, Phua SY, Pogson BJ. 2012. Reconsidering the nature and mode of action of metabolite retrograde signals from the chloroplast. Front. Plant Sci. 3:300
-
(2012)
Front. Plant Sci.
, vol.3
, pp. 300
-
-
Estavillo, G.M.1
Chan, K.X.2
Phua, S.Y.3
Pogson, B.J.4
-
47
-
-
84888418176
-
Disrupting autophagy restores peroxisome function to an Arabidopsis lon2 mutant and reveals a role for the LON2 protease in peroxisomal matrix protein degradation
-
Farmer LM, Rinaldi MA, Young PG, Danan CH, Burkhart SE, Bartel B. 2013. Disrupting autophagy restores peroxisome function to an Arabidopsis lon2 mutant and reveals a role for the LON2 protease in peroxisomal matrix protein degradation. Plant Cell 25:4085-100
-
(2013)
Plant Cell
, vol.25
, pp. 4085-4100
-
-
Farmer, L.M.1
Rinaldi, M.A.2
Young, P.G.3
Danan, C.H.4
Burkhart, S.E.5
Bartel, B.6
-
48
-
-
84873401017
-
Trapping and proteomic identification of cellular substrates of the ClpP protease in Staphylococcus aureus
-
Feng J, Michalik S, Varming AN, Andersen JH, Albrecht D, et al. 2013. Trapping and proteomic identification of cellular substrates of the ClpP protease in Staphylococcus aureus. J. Proteome Res. 12:547-58
-
(2013)
J. Proteome Res.
, vol.12
, pp. 547-558
-
-
Feng, J.1
Michalik, S.2
Varming, A.N.3
Andersen, J.H.4
Albrecht, D.5
-
49
-
-
77949565231
-
Reconstruction of metabolic pathways, protein expression, and homeostasismachineries acrossmaize bundle sheath and mesophyll chloroplasts: Large-scale quantitative proteomics using the first maize genome assembly
-
Friso G, Majeran W, Huang M, Sun Q, van Wijk KJ. 2010. Reconstruction of metabolic pathways, protein expression, and homeostasismachineries acrossmaize bundle sheath and mesophyll chloroplasts: large-scale quantitative proteomics using the first maize genome assembly. Plant Physiol. 152:1219-50
-
(2010)
Plant Physiol.
, vol.152
, pp. 1219-1250
-
-
Friso, G.1
Majeran, W.2
Huang, M.3
Sun, Q.4
Van Wijk, K.J.5
-
50
-
-
84871832682
-
Stable plastid transformation for high-level recombinant protein expression: Promises and challenges
-
Gao M, Li Y, Xue X, Wang X, Long J. 2012. Stable plastid transformation for high-level recombinant protein expression: promises and challenges. J. Biomed. Biotechnol. 2012:158232
-
(2012)
J. Biomed. Biotechnol.
, vol.2012
, pp. 158232
-
-
Gao, M.1
Li, Y.2
Xue, X.3
Wang, X.4
Long, J.5
-
52
-
-
84911458248
-
Sirtuin 3 interacts with Lon protease and regulates its acetylation status
-
Gibellini L, Pinti M, Beretti F, Pierri CL, Onofrio A, et al. 2014. Sirtuin 3 interacts with Lon protease and regulates its acetylation status. Mitochondrion 18:76-81
-
(2014)
Mitochondrion
, vol.18
, pp. 76-81
-
-
Gibellini, L.1
Pinti, M.2
Beretti, F.3
Pierri, C.L.4
Onofrio, A.5
-
53
-
-
68249107043
-
Cotranslational processing mechanisms: Towards a dynamic 3D model
-
Giglione C, Fieulaine S, Meinnel T. 2009. Cotranslational processing mechanisms: towards a dynamic 3D model. Trends Biochem. Sci. 34:417-26
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 417-426
-
-
Giglione, C.1
Fieulaine, S.2
Meinnel, T.3
-
54
-
-
84871749760
-
Mitochondrial morphology in mitophagy and macroautophagy
-
Gomes LC, Scorrano L. 2013. Mitochondrial morphology in mitophagy and macroautophagy. Biochim. Biophys. Acta 1833:205-12
-
(2013)
Biochim. Biophys. Acta
, vol.1833
, pp. 205-212
-
-
Gomes, L.C.1
Scorrano, L.2
-
55
-
-
84899115843
-
Chaperone and protease functions of LONprotease 2modulate the peroxisomal transition and degradation with autophagy
-
Goto-Yamada S, Mano S, Nakamori C, Kondo M, Yamawaki R, et al. 2014. Chaperone and protease functions of LONprotease 2modulate the peroxisomal transition and degradation with autophagy. Plant Cell Physiol. 55:482-96
-
(2014)
Plant Cell Physiol.
, vol.55
, pp. 482-496
-
-
Goto-Yamada, S.1
Mano, S.2
Nakamori, C.3
Kondo, M.4
Yamawaki, R.5
-
56
-
-
69449087350
-
The N-end rule pathway controls multiple functions during Arabidopsis shoot and leaf development
-
GracietE,Walter F, Maoileidigh DO, Pollmann S,MeyerowitzEM, et al. 2009. The N-end rule pathway controls multiple functions during Arabidopsis shoot and leaf development. PNAS 106:13618-23
-
(2009)
PNAS
, vol.106
, pp. 13618-13623
-
-
Graciet, E.1
Walter, F.2
Maoileidigh, D.O.3
Pollmann, S.4
Meyerowitz, E.M.5
-
57
-
-
84875000516
-
Tuning a ménage à trois: Co-evolution and co-adaptation of nuclear and organellar genomes in plants
-
Greiner S, Bock R. 2013. Tuning a ménage à trois: co-evolution and co-adaptation of nuclear and organellar genomes in plants. BioEssays 35:354-65
-
(2013)
BioEssays
, vol.35
, pp. 354-365
-
-
Greiner, S.1
Bock, R.2
-
58
-
-
84883575316
-
The Lon AAA+ protease
-
Gur E. 2013. The Lon AAA+ protease. Subcell. Biochem. 66:35-51
-
(2013)
Subcell. Biochem.
, vol.66
, pp. 35-51
-
-
Gur, E.1
-
59
-
-
84873712940
-
Architecture and regulation of HtrA-family proteins involved in protein quality control and stress response
-
Hansen G, Hilgenfeld R. 2013. Architecture and regulation of HtrA-family proteins involved in protein quality control and stress response. Cell. Mol. Life Sci. 70:761-75
-
(2013)
Cell. Mol. Life Sci.
, vol.70
, pp. 761-775
-
-
Hansen, G.1
Hilgenfeld, R.2
-
60
-
-
0034574725
-
Functional transformation of plant peroxisomes
-
Hayashi M, Toriyama K, Kondo M, Kato A, Mano S, et al. 2000. Functional transformation of plant peroxisomes. Cell Biochem. Biophys. 32:295-304
-
(2000)
Cell Biochem. Biophys.
, vol.32
, pp. 295-304
-
-
Hayashi, M.1
Toriyama, K.2
Kondo, M.3
Kato, A.4
Mano, S.5
-
61
-
-
34547475430
-
Dual specificities of the glyoxysomal/peroxisomal processing protease Deg15 in higher plants
-
Helm M, Luck C, Prestele J, Hierl G, Huesgen PF, et al. 2007. Dual specificities of the glyoxysomal/peroxisomal processing protease Deg15 in higher plants. PNAS 104:11501-6
-
(2007)
PNAS
, vol.104
, pp. 11501-11506
-
-
Helm, M.1
Luck, C.2
Prestele, J.3
Hierl, G.4
Huesgen, P.F.5
-
62
-
-
84878701862
-
Potential involvement of Nterminal acetylation in the quantitative regulation of the epsilon subunit of chloroplast ATP synthase under drought stress
-
Hoshiyasu S, Kohzuma K, Yoshida K, Fujiwara M, Fukao Y, et al. 2013. Potential involvement of Nterminal acetylation in the quantitative regulation of the epsilon subunit of chloroplast ATP synthase under drought stress. Biosci. Biotechnol. Biochem. 77:998-1007
-
(2013)
Biosci. Biotechnol. Biochem.
, vol.77
, pp. 998-1007
-
-
Hoshiyasu, S.1
Kohzuma, K.2
Yoshida, K.3
Fujiwara, M.4
Fukao, Y.5
-
63
-
-
80455174456
-
Functional diversification of thylakoidal processing peptidases in Arabidopsis thaliana
-
Hsu SC, Endow JK, Ruppel NJ, Roston RL, Baldwin AJ, Inoue K. 2011. Functional diversification of thylakoidal processing peptidases in Arabidopsis thaliana. PLOS ONE 6:e27258
-
(2011)
PLOS ONE
, vol.6
, pp. e27258
-
-
Hsu, S.C.1
Endow, J.K.2
Ruppel, N.J.3
Roston, R.L.4
Baldwin, A.J.5
Inoue, K.6
-
64
-
-
84864485324
-
Plant peroxisomes: Biogenesis and function
-
Hu J, Baker A, Bartel B, Linka N, Mullen RT, et al. 2012. Plant peroxisomes: biogenesis and function. Plant Cell 24:2279-303
-
(2012)
Plant Cell
, vol.24
, pp. 2279-2303
-
-
Hu, J.1
Baker, A.2
Bartel, B.3
Linka, N.4
Mullen, R.T.5
-
65
-
-
67650156863
-
Refining the definition of plant mitochondrial presequences through analysis of sorting signals, N-terminal modifications, and cleavage motifs
-
Huang S, Taylor NL, Whelan J, Millar AH. 2009. Refining the definition of plant mitochondrial presequences through analysis of sorting signals, N-terminal modifications, and cleavage motifs. Plant Physiol. 150:1272-85
-
(2009)
Plant Physiol.
, vol.150
, pp. 1272-1285
-
-
Huang, S.1
Taylor, N.L.2
Whelan, J.3
Millar, A.H.4
-
66
-
-
84869114693
-
Developments in quantitative mass spectrometry for the analysis of proteome dynamics
-
Hughes C, Krijgsveld J. 2012. Developments in quantitative mass spectrometry for the analysis of proteome dynamics. Trends Biotechnol. 30:668-76
-
(2012)
Trends Biotechnol.
, vol.30
, pp. 668-676
-
-
Hughes, C.1
Krijgsveld, J.2
-
67
-
-
84885123033
-
The N-degradome of Escherichia coli: Limited proteolysis in vivo generates a large pool of proteins bearing N-degrons
-
Humbard MA, Surkov S, De Donatis GM, Jenkins LM, Maurizi MR. 2013. The N-degradome of Escherichia coli: Limited proteolysis in vivo generates a large pool of proteins bearing N-degrons. J. Biol. Chem. 288:28913-24
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 28913-28924
-
-
Humbard, M.A.1
Surkov, S.2
De Donatis, G.M.3
Jenkins, L.M.4
Maurizi, M.R.5
-
69
-
-
53549113314
-
Chloroplasts are partially mobilized to the vacuole by autophagy
-
IshidaH,Yoshimoto K. 2008. Chloroplasts are partially mobilized to the vacuole by autophagy. Autophagy 4:961-62
-
(2008)
Autophagy
, vol.4
, pp. 961-962
-
-
Ishida, H.1
Yoshimoto, K.2
-
70
-
-
55549117167
-
Mobilization of Rubisco and stromalocalized fluorescent proteins of chloroplasts to the vacuole by an ATG gene-dependent autophagic process
-
Ishida H, Yoshimoto K, Izumi M, Reisen D, Yano Y, et al. 2008. Mobilization of Rubisco and stromalocalized fluorescent proteins of chloroplasts to the vacuole by an ATG gene-dependent autophagic process. Plant Physiol. 148:142-55
-
(2008)
Plant Physiol.
, vol.148
, pp. 142-155
-
-
Ishida, H.1
Yoshimoto, K.2
Izumi, M.3
Reisen, D.4
Yano, Y.5
-
71
-
-
34250166903
-
Support for a potential role of e coli oligopeptidase A in protein degradation
-
Jain R, Chan MK. 2007. Support for a potential role of E. coli oligopeptidase A in protein degradation. Biochem. Biophys. Res. Commun. 359:486-90
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.359
, pp. 486-490
-
-
Jain, R.1
Chan, M.K.2
-
73
-
-
77953743324
-
ATP-dependent proteases in biogenesis and maintenance of plant mitochondria
-
Janska H, Piechota J, Kwasniak M. 2012. ATP-dependent proteases in biogenesis and maintenance of plant mitochondria. Biochim. Biophys. Acta 1797:1071-75
-
(2012)
Biochim. Biophys. Acta
, vol.1797
, pp. 1071-1075
-
-
Janska, H.1
Piechota, J.2
Kwasniak, M.3
-
74
-
-
84888360060
-
Biogenesis and homeostasis of chloroplasts and other plastids
-
Jarvis P, Lopez-Juez E. 2013. Biogenesis and homeostasis of chloroplasts and other plastids. Nat. Rev. Mol. Cell Biol. 14:787-802
-
(2013)
Nat. Rev. Mol. Cell Biol.
, vol.14
, pp. 787-802
-
-
Jarvis, P.1
Lopez-Juez, E.2
-
76
-
-
2542431031
-
Progression and specificity of protein oxidation in the life cycle of Arabidopsis thaliana
-
Johansson E, Olsson O, Nystrom T. 2004. Progression and specificity of protein oxidation in the life cycle of Arabidopsis thaliana. J. Biol. Chem. 279:22204-8
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 22204-22208
-
-
Johansson, E.1
Olsson, O.2
Nystrom, T.3
-
77
-
-
84870064045
-
FtsHi1/ARC1 is an essential gene in Arabidopsis that links chloroplast biogenesis and division
-
Kadirjan-Kalbach DK, Yoder DW, Ruckle ME, Larkin RM, Osteryoung KW. 2012. FtsHi1/ARC1 is an essential gene in Arabidopsis that links chloroplast biogenesis and division. Plant J. 72:856-67
-
(2012)
Plant J.
, vol.72
, pp. 856-867
-
-
Kadirjan-Kalbach, D.K.1
Yoder, D.W.2
Ruckle, M.E.3
Larkin, R.M.4
Osteryoung, K.W.5
-
78
-
-
34250613221
-
The thylakoid lumen protease Deg1 is involved in the repair of photosystem II from photoinhibition in Arabidopsis
-
Kapri-Pardes E, Naveh L, Adam Z. 2007. The thylakoid lumen protease Deg1 is involved in the repair of photosystem II from photoinhibition in Arabidopsis. Plant Cell 19:1039-47
-
(2007)
Plant Cell
, vol.19
, pp. 1039-1047
-
-
Kapri-Pardes, E.1
Naveh, L.2
Adam, Z.3
-
79
-
-
77957966789
-
New insights into the types and function of proteases in plastids
-
Kato Y, Sakamoto W. 2010. New insights into the types and function of proteases in plastids. Int. Rev. Cell Mol. Biol. 280:185-218
-
(2010)
Int. Rev. Cell Mol. Biol.
, vol.280
, pp. 185-218
-
-
Kato, Y.1
Sakamoto, W.2
-
80
-
-
84904059652
-
Phosphorylation of photosystem II core proteins prevents undesirable cleavage of D1 and contributes to the fine-tuned repair of photosystem II
-
Kato Y, Sakamoto W. 2014. Phosphorylation of photosystem II core proteins prevents undesirable cleavage of D1 and contributes to the fine-tuned repair of photosystem II. Plant J. 79:312-21
-
(2014)
Plant J.
, vol.79
, pp. 312-321
-
-
Kato, Y.1
Sakamoto, W.2
-
81
-
-
84877684893
-
The number, speed, and impact of plastid endosymbioses in eukaryotic evolution
-
Keeling PJ. 2013. The number, speed, and impact of plastid endosymbioses in eukaryotic evolution. Annu. Rev. Plant Biol. 64:583-607
-
(2013)
Annu. Rev. Plant Biol.
, vol.64
, pp. 583-607
-
-
Keeling, P.J.1
-
82
-
-
84893114070
-
Autophagy-related proteins are required for degradation of peroxisomes in Arabidopsis hypocotyls during seedling growth
-
Kim J, Lee H, Lee HN, Kim SH, Shin KD, Chung T. 2013. Autophagy-related proteins are required for degradation of peroxisomes in Arabidopsis hypocotyls during seedling growth. Plant Cell 25:4956-66
-
(2013)
Plant Cell
, vol.25
, pp. 4956-4966
-
-
Kim, J.1
Lee, H.2
Lee, H.N.3
Kim, S.H.4
Shin, K.D.5
Chung, T.6
-
83
-
-
84877080040
-
Modified Clp protease complex in the ClpP3 null mutant and consequences for chloroplast development and function in Arabidopsis
-
Kim J, Olinares PD, Oh SH, Ghisaura S, Poliakov A, et al. 2013. Modified Clp protease complex in the ClpP3 null mutant and consequences for chloroplast development and function in Arabidopsis. Plant Physiol. 162:157-79
-
(2013)
Plant Physiol.
, vol.162
, pp. 157-179
-
-
Kim, J.1
Olinares, P.D.2
Oh, S.H.3
Ghisaura, S.4
Poliakov, A.5
-
84
-
-
70349238699
-
Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis
-
Kim J, Rudella A, Ramirez Rodriguez V, Zybailov B, Olinares PD, van Wijk KJ. 2009. Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis. Plant Cell 21:1669-92
-
(2009)
Plant Cell
, vol.21
, pp. 1669-1692
-
-
Kim, J.1
Rudella, A.2
Ramirez Rodriguez, V.3
Zybailov, B.4
Olinares, P.D.5
Van Wijk, K.J.6
-
85
-
-
84864137161
-
In vivo quantitative proteome profiling: Planning and evaluation of SILAC experiments
-
KirchnerM, Selbach M. 2012. In vivo quantitative proteome profiling: planning and evaluation of SILAC experiments. Methods Mol. Biol. 893:175-99
-
(2012)
Methods Mol. Biol.
, vol.893
, pp. 175-199
-
-
Kirchner, M.1
Selbach, M.2
-
86
-
-
80053404377
-
Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates
-
Kleifeld O, Doucet A, Prudova A, auf dem Keller U, Gioia M, et al. 2011. Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates. Nat. Protoc. 6:1578-611
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1578-1611
-
-
Kleifeld, O.1
Doucet, A.2
Prudova, A.3
Auf Dem Keller, U.4
Gioia, M.5
-
87
-
-
79958808887
-
Structural adaptation of the plant protease Deg1 to repair photosystem II during light exposure
-
Kley J, Schmidt B, Boyanov B, Stolt-Bergner PC, Kirk R, et al. 2011. Structural adaptation of the plant protease Deg1 to repair photosystem II during light exposure. Nat. Struct. Mol. Biol. 18:728-31
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 728-731
-
-
Kley, J.1
Schmidt, B.2
Boyanov, B.3
Stolt-Bergner, P.C.4
Kirk, R.5
-
88
-
-
84859250826
-
Profiling protease activities by dynamic proteomics workflows
-
Klingler D, Hardt M. 2012. Profiling protease activities by dynamic proteomics workflows. Proteomics 12:587-96
-
(2012)
Proteomics
, vol.12
, pp. 587-596
-
-
Klingler, D.1
Hardt, M.2
-
89
-
-
84859844774
-
A novel mitochondrial and chloroplast peptidasome, PreP
-
Kmiec B, Glaser E. 2012. A novel mitochondrial and chloroplast peptidasome, PreP. Physiol. Plant. 145:180-86
-
(2012)
Physiol. Plant.
, vol.145
, pp. 180-186
-
-
Kmiec, B.1
Glaser, E.2
-
90
-
-
84885080562
-
Organellar oligopeptidase (OOP) provides a complementary pathway for targeting peptide degradation in mitochondria and chloroplasts
-
Kmiec B, Teixeira PF, Berntsson RP, Murcha MW, Branca RM, et al. 2013. Organellar oligopeptidase (OOP) provides a complementary pathway for targeting peptide degradation in mitochondria and chloroplasts. PNAS 110:E3761-69
-
(2013)
PNAS
, vol.110
, pp. E3761-E3769
-
-
Kmiec, B.1
Teixeira, P.F.2
Berntsson, R.P.3
Murcha, M.W.4
Branca, R.M.5
-
91
-
-
84897047884
-
Phenotypical consequences of expressing the dually targeted Presequence Protease, AtPreP, exclusively in mitochondria
-
Kmiec B, Teixeira PF, Glaser E. 2014. Phenotypical consequences of expressing the dually targeted Presequence Protease, AtPreP, exclusively in mitochondria. Biochimie 100:167-70
-
(2014)
Biochimie
, vol.100
, pp. 167-170
-
-
Kmiec, B.1
Teixeira, P.F.2
Glaser, E.3
-
92
-
-
84859870598
-
Rhomboid proteases in plants-still in square one? Physiol
-
Knopf RR, Adam Z. 2012. Rhomboid proteases in plants-still in square one? Physiol. Plant. 145:41-51
-
(2012)
Plant.
, vol.145
, pp. 41-51
-
-
Knopf, R.R.1
Adam, Z.2
-
93
-
-
84868479964
-
Rhomboid proteins in the chloroplast envelope affect the level of allene oxide synthase in Arabidopsis thaliana
-
Knopf RR, Feder A, Mayer K, Lin A, Rozenberg M, et al. 2012. Rhomboid proteins in the chloroplast envelope affect the level of allene oxide synthase in Arabidopsis thaliana. Plant J. 72:559-71
-
(2012)
Plant J.
, vol.72
, pp. 559-571
-
-
Knopf, R.R.1
Feder, A.2
Mayer, K.3
Lin, A.4
Rozenberg, M.5
-
94
-
-
84914161578
-
The mitochondrial lysine acetylome of Arabidopsis
-
König AC, Hartl M, Boersema PJ, Mann M, Finkemeier I. 2014. The mitochondrial lysine acetylome of Arabidopsis. Mitochondrion 19:252-60
-
(2014)
Mitochondrion
, vol.19
, pp. 252-260
-
-
Onig A C, K.1
Hartl, M.2
Boersema, P.J.3
Mann, M.4
Finkemeier, I.5
-
95
-
-
84897634466
-
The Arabidopsis class II sirtuin is a lysine deacetylase and interacts with mitochondrial energy metabolism
-
König AC, Hartl M, Pham PA, Laxa M, Boersema PJ, et al. 2014. The Arabidopsis class II sirtuin is a lysine deacetylase and interacts with mitochondrial energy metabolism. Plant Physiol. 164:1401-14
-
(2014)
Plant Physiol.
, vol.164
, pp. 1401-1414
-
-
Onig A C, K.1
Hartl, M.2
Pham, P.A.3
Laxa, M.4
Boersema, P.J.5
-
96
-
-
84859863110
-
Proteolytic system of plant mitochondria
-
Kwasniak M, Pogorzelec L, Migdal I, Smakowska E, Janska H. 2012. Proteolytic system of plant mitochondria. Physiol. Plant. 145:187-95
-
(2012)
Physiol. Plant.
, vol.145
, pp. 187-195
-
-
Kwasniak, M.1
Pogorzelec, L.2
Migdal, I.3
Smakowska, E.4
Janska, H.5
-
97
-
-
84875255239
-
Protein TAILS: When termini tell tales of proteolysis and function
-
Lange PF, Overall CM. 2013. Protein TAILS: when termini tell tales of proteolysis and function. Curr. Opin. Chem. Biol. 17:73-82
-
(2013)
Curr. Opin. Chem. Biol.
, vol.17
, pp. 73-82
-
-
Lange, P.F.1
Overall, C.M.2
-
98
-
-
84871817523
-
Cytosolic events involved in chloroplast protein targeting
-
Lee DW, Jung C, Hwang I. 2013. Cytosolic events involved in chloroplast protein targeting. Biochim. Biophys. Acta 1833:245-52
-
(2013)
Biochim. Biophys. Acta
, vol.1833
, pp. 245-252
-
-
Lee, D.W.1
Jung, C.2
Hwang, I.3
-
99
-
-
84901007924
-
Degradation of plant peroxisomes by autophagy
-
LeeHN, Kim J, Chung T. 2014. Degradation of plant peroxisomes by autophagy. Front. Plant Sci. 5:139
-
(2014)
Front. Plant Sci.
, vol.5
, pp. 139
-
-
Lee, H.N.1
Kim, J.2
Chung, T.3
-
100
-
-
75649148551
-
Heat shock protein cognate 70-4 and an E3 ubiquitin ligase, CHIP, mediate plastid-destined precursor degradation through the ubiquitin-26S proteasome system in Arabidopsis
-
Lee S, Lee DW, Lee Y, Mayer U, Stierhof YD, et al. 2009. Heat shock protein cognate 70-4 and an E3 ubiquitin ligase, CHIP, mediate plastid-destined precursor degradation through the ubiquitin-26S proteasome system in Arabidopsis. Plant Cell 21:3984-4001
-
(2009)
Plant Cell
, vol.21
, pp. 3984-4001
-
-
Lee, S.1
Lee, D.W.2
Lee, Y.3
Mayer, U.4
Stierhof, Y.D.5
-
101
-
-
0035823557
-
Identification and characterization of SppA, a novel lightinducible chloroplast protease complex associated with thylakoid membranes
-
Lensch M, Herrmann RG, Sokolenko A. 2001. Identification and characterization of SppA, a novel lightinducible chloroplast protease complex associated with thylakoid membranes. J. Biol. Chem. 276:33645-51
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 33645-33651
-
-
Lensch, M.1
Herrmann, R.G.2
Sokolenko, A.3
-
102
-
-
84870830104
-
Arabidopsis plastid AMOS1/EGY1 integrates abscisic acid signaling to regulate global gene expression response to ammonium stress
-
Li B, Li Q, Xiong L, Kronzucker HJ, Kramer U, Shi W. 2012. Arabidopsis plastid AMOS1/EGY1 integrates abscisic acid signaling to regulate global gene expression response to ammonium stress. Plant Physiol. 160:2040-51
-
(2012)
Plant Physiol.
, vol.160
, pp. 2040-2051
-
-
Li, B.1
Li, Q.2
Xiong, L.3
Kronzucker, H.J.4
Kramer, U.5
Shi, W.6
-
103
-
-
84897081288
-
AUTOPHAGY-RELATED11 plays a critical role in general autophagy-and senescence-induced mitophagy in Arabidopsis
-
Li F, Chung T, Vierstra RD. 2014. AUTOPHAGY-RELATED11 plays a critical role in general autophagy-and senescence-induced mitophagy in Arabidopsis. Plant Cell 26:788-807
-
(2014)
Plant Cell
, vol.26
, pp. 788-807
-
-
Li, F.1
Chung, T.2
Vierstra, R.D.3
-
104
-
-
84865596150
-
Autophagy: A multifaceted intracellular system for bulk and selective recycling
-
Li F, Vierstra RD. 2012. Autophagy: A multifaceted intracellular system for bulk and selective recycling. Trends Plant Sci. 17:526-37
-
(2012)
Trends Plant Sci.
, vol.17
, pp. 526-537
-
-
Li, F.1
Vierstra, R.D.2
-
105
-
-
84887206494
-
Characterization and fine mapping of a novel rice narrow leaf mutant nal9
-
Li W, Wu C, Hu G, Xing L, Qian W, et al. 2013. Characterization and fine mapping of a novel rice narrow leaf mutant nal9. J. Integr. Plant Biol. 55:1016-25
-
(2013)
J. Integr. Plant Biol.
, vol.55
, pp. 1016-1025
-
-
Li, W.1
Wu, C.2
Hu, G.3
Xing, L.4
Qian, W.5
-
106
-
-
84868228819
-
Chloroplast biogenesis is regulated by direct action of the ubiquitin-proteasome system
-
Ling Q, HuangW, Baldwin A, Jarvis P. 2012. Chloroplast biogenesis is regulated by direct action of the ubiquitin-proteasome system. Science 338:655-59
-
(2012)
Science
, vol.338
, pp. 655-659
-
-
Ling, Q.1
Huang, W.2
Baldwin, A.3
Jarvis, P.4
-
107
-
-
70350633819
-
Arabidopsis LON2 is necessary for peroxisomal function and sustained matrix protein import
-
Lingard MJ, Bartel B. 2009. Arabidopsis LON2 is necessary for peroxisomal function and sustained matrix protein import. Plant Physiol. 151:1354-65
-
(2009)
Plant Physiol.
, vol.151
, pp. 1354-1365
-
-
Lingard, M.J.1
Bartel, B.2
-
108
-
-
79957693449
-
Identification of novel plant peroxisomal targeting signals by a combination of machine learning methods and in vivo subcellular targeting analyses
-
Lingner T, Kataya AR, Antonicelli GE, Benichou A, Nilssen K, et al. 2011. Identification of novel plant peroxisomal targeting signals by a combination of machine learning methods and in vivo subcellular targeting analyses. Plant Cell 23:1556-72
-
(2011)
Plant Cell
, vol.23
, pp. 1556-1572
-
-
Lingner, T.1
Kataya, A.R.2
Antonicelli, G.E.3
Benichou, A.4
Nilssen, K.5
-
109
-
-
84887022165
-
Oxidative stress and mitochondrial protein quality control in aging
-
Lionaki E, Tavernarakis N. 2013. Oxidative stress and mitochondrial protein quality control in aging. J. Proteomics 92:181-94
-
(2013)
J. Proteomics
, vol.92
, pp. 181-194
-
-
Lionaki, E.1
Tavernarakis, N.2
-
110
-
-
77955124084
-
Arabidopsis chloroplast FtsH, var2 and suppressors of var2 leaf variegation: A review
-
LiuX,Yu F,Rodermel S. 2010. Arabidopsis chloroplast FtsH, var2 and suppressors of var2 leaf variegation: A review. J. Integr. Plant Biol. 52:750-61
-
(2010)
J. Integr. Plant Biol.
, vol.52
, pp. 750-761
-
-
Liu, X.1
Yu, F.2
Rodermel, S.3
-
111
-
-
84865859612
-
Autophagy: Pathways for self-eating in plant cells
-
Liu Y, Bassham DC. 2012. Autophagy: pathways for self-eating in plant cells. Annu. Rev. Plant Biol. 63:215-37
-
(2012)
Annu. Rev. Plant Biol.
, vol.63
, pp. 215-237
-
-
Liu, Y.1
Bassham, D.C.2
-
112
-
-
84857950653
-
The functional network of the Arabidopsis thaliana plastoglobule proteome based on quantitative proteomics and genome-wide co-expression analysis
-
Lundquist P, Poliakov A, Bhuiyan NH, Zybailov B, Sun Q, vanWijk KJ. 2012. The functional network of the Arabidopsis thaliana plastoglobule proteome based on quantitative proteomics and genome-wide co-expression analysis. Plant Physiol. 58:1172-92
-
(2012)
Plant Physiol.
, vol.58
, pp. 1172-1192
-
-
Lundquist, P.1
Poliakov, A.2
Bhuiyan, N.H.3
Zybailov, B.4
Sun, Q.5
Vanwijk, K.J.6
-
113
-
-
78650882578
-
Structural and metabolic transitions of C4 leaf development and differentiation defined bymicroscopy and quantitative proteomics
-
MajeranM, Friso G, Ponnala L, Connolly B, HuangM, et al. 2010. Structural and metabolic transitions of C4 leaf development and differentiation defined bymicroscopy and quantitative proteomics. Plant Cell 22:3509-42
-
(2010)
Plant Cell
, vol.22
, pp. 3509-3542
-
-
Majeran, M.1
Friso, G.2
Ponnala, L.3
Connolly, B.4
Huang, M.5
-
114
-
-
79953729355
-
Plastid biotechnology: Food, fuel, and medicine for the 21st century
-
Maliga P, Bock R. 2011. Plastid biotechnology: food, fuel, and medicine for the 21st century. Plant Physiol. 155:1501-10
-
(2011)
Plant Physiol.
, vol.155
, pp. 1501-1510
-
-
Maliga, P.1
Bock, R.2
-
115
-
-
53649092665
-
"Senescence-associated vacuoles" are involved in the degradation of chloroplast proteins in tobacco leaves
-
Martinez DE, Costa ML, Gomez FM, Otegui MS, Guiamet JJ. 2008. "Senescence-associated vacuoles" are involved in the degradation of chloroplast proteins in tobacco leaves. Plant J. 56:196-206
-
(2008)
Plant J.
, vol.56
, pp. 196-206
-
-
Martinez, D.E.1
Costa, M.L.2
Gomez, F.M.3
Otegui, M.S.4
Guiamet, J.J.5
-
116
-
-
84871253265
-
A newly discovered function of peroxisomes: Involvement in biotin biosynthesis
-
Maruyama J, Yamaoka S, Matsuo I, Tsutsumi N, Kitamoto K. 2012. A newly discovered function of peroxisomes: involvement in biotin biosynthesis. Plant Signal. Behav. 7:1589-93
-
(2012)
Plant Signal. Behav.
, vol.7
, pp. 1589-1593
-
-
Maruyama, J.1
Yamaoka, S.2
Matsuo, I.3
Tsutsumi, N.4
Kitamoto, K.5
-
117
-
-
33746211620
-
Impact of the N-terminal amino acid on targeted protein degradation
-
Meinnel T, Serero A, Giglione C. 2006. Impact of the N-terminal amino acid on targeted protein degradation. Biol. Chem. 387:839-51
-
(2006)
Biol. Chem.
, vol.387
, pp. 839-851
-
-
Meinnel, T.1
Serero, A.2
Giglione, C.3
-
118
-
-
84885334551
-
Emerging roles of mitochondria in the evolution, biogenesis, and function of peroxisomes
-
Mohanty A, McBride HM. 2013. Emerging roles of mitochondria in the evolution, biogenesis, and function of peroxisomes. Front. Physiol. 4:268
-
(2013)
Front. Physiol.
, vol.4
, pp. 268
-
-
Mohanty, A.1
McBride, H.M.2
-
120
-
-
79959843748
-
An Arabidopsis E3 ligase, SHOOT GRAVITROPISM9, modulates the interaction between statoliths and F-actin in gravity sensing
-
Nakamura M, Toyota M, Tasaka M, Morita MT. 2011. An Arabidopsis E3 ligase, SHOOT GRAVITROPISM9, modulates the interaction between statoliths and F-actin in gravity sensing. Plant Cell 23:1830-48
-
(2011)
Plant Cell
, vol.23
, pp. 1830-1848
-
-
Nakamura, M.1
Toyota, M.2
Tasaka, M.3
Morita, M.T.4
-
121
-
-
84864744900
-
Mitochondrial import efficiency of ATFS-1 regulates mitochondrial UPR activation
-
Nargund AM, Pellegrino MW, Fiorese CJ, Baker BM, Haynes CM. 2012. Mitochondrial import efficiency of ATFS-1 regulates mitochondrial UPR activation. Science 337:587-90
-
(2012)
Science
, vol.337
, pp. 587-590
-
-
Nargund, A.M.1
Pellegrino, M.W.2
Fiorese, C.J.3
Baker, B.M.4
Haynes, C.M.5
-
122
-
-
84886283430
-
Towards a critical understanding of the photosystem II repair mechanism and its regulation during stress conditions
-
Nath K, Jajoo A, Poudyal RS, Timilsina R, Park YS, et al. 2013. Towards a critical understanding of the photosystem II repair mechanism and its regulation during stress conditions. FEBS Lett. 587:3372-81
-
(2013)
FEBS Lett.
, vol.587
, pp. 3372-3381
-
-
Nath, K.1
Jajoo, A.2
Poudyal, R.S.3
Timilsina, R.4
Park, Y.S.5
-
123
-
-
84907058339
-
Proteins with high turnover rate in barley leaves estimated by proteome analysis combined with in planta isotope labelling
-
Nelson CJ, Alexova R, Jacoby RP, Millar AH. 2014. Proteins with high turnover rate in barley leaves estimated by proteome analysis combined with in planta isotope labelling. Plant Physiol. 166:91-108
-
(2014)
Plant Physiol.
, vol.166
, pp. 91-108
-
-
Nelson, C.J.1
Alexova, R.2
Jacoby, R.P.3
Millar, A.H.4
-
124
-
-
84879953097
-
Degradation rate of mitochondrial proteins in Arabidopsis thaliana cells
-
Nelson CJ, Li L, Jacoby RP,Millar AH. 2013. Degradation rate of mitochondrial proteins in Arabidopsis thaliana cells. J. Proteome Res. 12:3449-59
-
(2013)
J. Proteome Res.
, vol.12
, pp. 3449-3459
-
-
Nelson, C.J.1
Li, L.2
Jacoby, R.P.3
Millar, A.H.4
-
125
-
-
84896762078
-
Quantitative analysis of protein turnover in plants
-
Nelson CJ, Li L,Millar AH. 2013. Quantitative analysis of protein turnover in plants. Proteomics 14:579-92
-
(2013)
Proteomics
, vol.14
, pp. 579-592
-
-
Nelson, C.J.1
Li, L.2
Millar, A.H.3
-
126
-
-
84904316002
-
Anterograde and retrograde regulation of nuclear genes encoding mitochondrial proteins during growth, development, and stress
-
Ng S, De Clercq I, Van Aken O, Law SR, Ivanova A, et al. 2014. Anterograde and retrograde regulation of nuclear genes encoding mitochondrial proteins during growth, development, and stress. Mol. Plant 7:1075-93
-
(2014)
Mol. Plant
, vol.7
, pp. 1075-1093
-
-
Ng, S.1
De Clercq, I.2
Van Aken, O.3
Law, S.R.4
Ivanova, A.5
-
127
-
-
84880938835
-
ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis
-
Nishimura K, Asakura Y, Friso G, Kim J, Oh SH, et al. 2013. ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis. Plant Cell 25:2276-301
-
(2013)
Plant Cell
, vol.25
, pp. 2276-2301
-
-
Nishimura, K.1
Asakura, Y.2
Friso, G.3
Kim, J.4
Oh, S.H.5
-
128
-
-
84934990762
-
Organization, function and substrates of the essential Clp protease system in plastids
-
In press
-
Nishimura K, van Wijk KJ. 2014. Organization, function and substrates of the essential Clp protease system in plastids. Biochim. Biophys. Acta. In press. doi: 10.1016/j.bbabio.2014.11.012
-
(2014)
Biochim. Biophys. Acta
-
-
Nishimura, K.1
Van Wijk, K.J.2
-
129
-
-
17844403545
-
Role of oxidative carbonylation in protein quality control and senescence
-
Nystrom T. 2005. Role of oxidative carbonylation in protein quality control and senescence. EMBO J. 24:1311-17
-
(2005)
EMBO J.
, vol.24
, pp. 1311-1317
-
-
Nystrom, T.1
-
130
-
-
84900995914
-
FtsH protease-mediated regulation of various cellular functions
-
Okuno T, Ogura T. 2013. FtsH protease-mediated regulation of various cellular functions. Subcell. Biochem. 66:53-69
-
(2013)
Subcell. Biochem.
, vol.66
, pp. 53-69
-
-
Okuno, T.1
Ogura, T.2
-
131
-
-
79960884954
-
Subunit stoichiometry, evolution, and functional implications of an asymmetric plant plastid ClpP/R protease complex in Arabidopsis
-
Olinares PD, Kim J, Davis JI, van Wijk KJ. 2011. Subunit stoichiometry, evolution, and functional implications of an asymmetric plant plastid ClpP/R protease complex in Arabidopsis. Plant Cell 23:2348-61
-
(2011)
Plant Cell
, vol.23
, pp. 2348-2361
-
-
Olinares, P.D.1
Kim, J.2
Davis, J.I.3
Van Wijk, K.J.4
-
132
-
-
79958140971
-
TheClp protease system; A central component of the chloroplast protease network
-
Olinares PD,Kim J, vanWijk KJ. 2011. TheClp protease system; a central component of the chloroplast protease network. Biochim. Biophys. Acta 1807:999-1011
-
(2011)
Biochim. Biophys. Acta
, vol.1807
, pp. 999-1011
-
-
Olinares, P.D.1
Kim, J.2
Vanwijk, K.J.3
-
133
-
-
84876805343
-
Evidence for contribution of autophagy to Rubisco degradation during leaf senescence in Arabidopsis thaliana
-
Ono Y,Wada S, Izumi M, Makino A, IshidaH. 2013. Evidence for contribution of autophagy to Rubisco degradation during leaf senescence in Arabidopsis thaliana. Plant Cell Environ. 36:1147-59
-
(2013)
Plant Cell Environ.
, vol.36
, pp. 1147-1159
-
-
Ono, Y.1
Wada, S.2
Izumi, M.3
Makino, A.4
Ishidah5
-
134
-
-
34548417715
-
Multiple intracellular locations of Lon protease in Arabidopsis: Evidence for the localization of AtLon4 to chloroplasts
-
Ostersetzer O, Kato Y, Adam Z, Sakamoto W. 2007. Multiple intracellular locations of Lon protease in Arabidopsis: evidence for the localization of AtLon4 to chloroplasts. Plant Cell Physiol. 48:881-85
-
(2007)
Plant Cell Physiol.
, vol.48
, pp. 881-885
-
-
Ostersetzer, O.1
Kato, Y.2
Adam, Z.3
Sakamoto, W.4
-
135
-
-
15544364270
-
Senescence-associated vacuoles with intense proteolytic activity develop in leaves of Arabidopsis and soybean
-
Otegui MS, Noh YS, Martinez DE, Vila Petroff MG, Staehelin LA, et al. 2005. Senescence-associated vacuoles with intense proteolytic activity develop in leaves of Arabidopsis and soybean. Plant J. 41:831-44
-
(2005)
Plant J.
, vol.41
, pp. 831-844
-
-
Otegui, M.S.1
Noh, Y.S.2
Martinez, D.E.3
Vila Petroff, M.G.4
Staehelin, L.A.5
-
136
-
-
84902310414
-
The Arabidopsis mitochondrial membrane-bound ubiquitin proteaseUBP27 contributes to mitochondrial morphogenesis
-
Pan R,KaurN,Hu J. 2014. The Arabidopsis mitochondrial membrane-bound ubiquitin proteaseUBP27 contributes to mitochondrial morphogenesis. Plant J. 78:1047-59
-
(2014)
Plant J.
, vol.78
, pp. 1047-1059
-
-
Pan, R.1
Kaur, N.2
Hu, J.3
-
137
-
-
84868322406
-
Misexpression of a chloroplast aspartyl protease leads to severe growth defects and alters carbohydrate metabolism in Arabidopsis
-
Paparelli E, Gonzali S, Parlanti S, Novi G, Giorgi FM, et al. 2012. Misexpression of a chloroplast aspartyl protease leads to severe growth defects and alters carbohydrate metabolism in Arabidopsis. Plant Physiol. 160:1237-50
-
(2012)
Plant Physiol.
, vol.160
, pp. 1237-1250
-
-
Paparelli, E.1
Gonzali, S.2
Parlanti, S.3
Novi, G.4
Giorgi, F.M.5
-
138
-
-
1042289735
-
Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications
-
Peltier JB, Ripoll DR, Friso G, Rudella A, Cai Y, et al. 2004. Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications. J. Biol. Chem. 279:4768-81
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 4768-4781
-
-
Peltier, J.B.1
Ripoll, D.R.2
Friso, G.3
Rudella, A.4
Cai, Y.5
-
139
-
-
79953704799
-
Transgenic crops for the production of recombinant vaccines and anti-microbial antibodies
-
Peters J, Stoger E. 2011. Transgenic crops for the production of recombinant vaccines and anti-microbial antibodies. Hum. Vaccines 7:367-74
-
(2011)
Hum. Vaccines
, vol.7
, pp. 367-374
-
-
Peters, J.1
Stoger, E.2
-
140
-
-
77951246247
-
Identification and characterization of high molecular weight complexes formed by matrix AAA proteases and prohibitins in mitochondria of Arabidopsis thaliana
-
Piechota J, Kolodziejczak M, Juszczak I, SakamotoW,Janska H. 2010. Identification and characterization of high molecular weight complexes formed by matrix AAA proteases and prohibitins in mitochondria of Arabidopsis thaliana. J. Biol. Chem. 285:12512-21
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 12512-12521
-
-
Piechota, J.1
Kolodziejczak, M.2
Juszczak, I.3
Sakamoto, W.4
Janska, H.5
-
141
-
-
84875266403
-
Contemporary positional proteomics strategies to study protein processing
-
Plasman K, Van Damme P, Gevaert K. 2013. Contemporary positional proteomics strategies to study protein processing. Curr. Opin. Chem. Biol. 17:66-72
-
(2013)
Curr. Opin. Chem. Biol.
, vol.17
, pp. 66-72
-
-
Plasman, K.1
Van Damme, P.2
Gevaert, K.3
-
142
-
-
84899649317
-
Correlation of mRNA and protein abundance in the developing maize leaf
-
Ponnala L, Wang Y, Sun Q, van Wijk KJ. 2014. Correlation of mRNA and protein abundance in the developing maize leaf. Plant J. 78:424-40
-
(2014)
Plant J.
, vol.78
, pp. 424-440
-
-
Ponnala, L.1
Wang, Y.2
Sun, Q.3
Van Wijk, K.J.4
-
143
-
-
33847179916
-
Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes
-
Pratt JM, Simpson DM, Doherty MK, Rivers J, Gaskell SJ, Beynon RJ. 2006. Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes. Nat. Protoc. 1:1029-43
-
(2006)
Nat. Protoc.
, vol.1
, pp. 1029-1043
-
-
Pratt, J.M.1
Simpson, D.M.2
Doherty, M.K.3
Rivers, J.4
Gaskell, S.J.5
Beynon, R.J.6
-
144
-
-
84887499152
-
Understanding chloroplast biogenesis using second-site suppressors of immutans and var2
-
Putarjunan A, Liu X, Nolan T, Yu F, Rodermel S. 2013. Understanding chloroplast biogenesis using second-site suppressors of immutans and var2. Photosynth. Res. 116:437-53
-
(2013)
Photosynth. Res.
, vol.116
, pp. 437-453
-
-
Putarjunan, A.1
Liu, X.2
Nolan, T.3
Yu, F.4
Rodermel, S.5
-
145
-
-
84888871901
-
Proteome analysis of peroxisomes from etiolated Arabidopsis seedlings identifies a peroxisomal protease involved in -oxidation and development
-
Quan S, Yang P, Cassin-Ross G, Kaur N, Switzenberg R, et al. 2013. Proteome analysis of peroxisomes from etiolated Arabidopsis seedlings identifies a peroxisomal protease involved in -oxidation and development. Plant Physiol. 163:1518-38
-
(2013)
Plant Physiol.
, vol.163
, pp. 1518-1538
-
-
Quan, S.1
Yang, P.2
Cassin-Ross, G.3
Kaur, N.4
Switzenberg, R.5
-
146
-
-
53049084651
-
Proteome-wide characterization of seed aging in Arabidopsis A comparison between artificial and natural aging protocols
-
Rajjou L, Lovigny Y, Groot SP, Belghazi M, Job C, Job D. 2008. Proteome-wide characterization of seed aging in Arabidopsis. A comparison between artificial and natural aging protocols. Plant Physiol. 148:620-41
-
(2008)
Plant Physiol.
, vol.148
, pp. 620-641
-
-
Rajjou, L.1
Lovigny, Y.2
Groot, S.P.3
Belghazi, M.4
Job, C.5
Job, D.6
-
147
-
-
84891804220
-
MEROPS: The database of proteolytic enzymes, their substrates and inhibitors
-
Rawlings ND,WallerM, Barrett AJ, Bateman A. 2014. MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Res. 42:D503-9
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D503-D509
-
-
Rawlings, N.D.1
Waller, M.2
Barrett, A.J.3
Bateman, A.4
-
148
-
-
84979555864
-
Functions of autophagy in plant carbon and nitrogen metabolism
-
Ren C, Liu J, Gong Q. 2014. Functions of autophagy in plant carbon and nitrogen metabolism. Front. Plant Sci. 5:301
-
(2014)
Front. Plant Sci.
, vol.5
, pp. 301
-
-
Ren, C.1
Liu, J.2
Gong, Q.3
-
149
-
-
58249113926
-
Role of Lon1 protease in post-germinative growth and maintenance of mitochondrial function in Arabidopsis thaliana
-
Rigas S,Daras G, Laxa M, Marathias N, Fasseas C, et al. 2009. Role of Lon1 protease in post-germinative growth and maintenance of mitochondrial function in Arabidopsis thaliana. New Phytol. 181:588-600
-
(2009)
New Phytol.
, vol.181
, pp. 588-600
-
-
Rigas, S.1
Daras, G.2
Laxa, M.3
Marathias, N.4
Fasseas, C.5
-
150
-
-
84901056356
-
Evolution and significance of the Lon gene family in Arabidopsis organelle biogenesis and energy metabolism
-
Rigas S, Daras G, Tsitsekian D, Alatzas A, Hatzopoulos P. 2014. Evolution and significance of the Lon gene family in Arabidopsis organelle biogenesis and energy metabolism. Front. Plant Sci. 5:145
-
(2014)
Front. Plant Sci.
, vol.5
, pp. 145
-
-
Rigas, S.1
Daras, G.2
Tsitsekian, D.3
Alatzas, A.4
Hatzopoulos, P.5
-
151
-
-
84859875666
-
The multifaceted role of Lon proteolysis in seedling establishment and maintenance of plant organelle function: Living from protein destruction
-
Rigas S, Daras G, Tsitsekian D, Hatzopoulos P. 2012. The multifaceted role of Lon proteolysis in seedling establishment and maintenance of plant organelle function: living from protein destruction. Physiol. Plant. 145:215-23
-
(2012)
Physiol. Plant.
, vol.145
, pp. 215-223
-
-
Rigas, S.1
Daras, G.2
Tsitsekian, D.3
Hatzopoulos, P.4
-
152
-
-
79960451307
-
The ClpS adaptor mediates staged delivery of N-end rule substrates to the AAA+ ClpAP protease
-
Roman-Hernandez G, Hou JY, Grant RA, Sauer RT, Baker TA. 2011. The ClpS adaptor mediates staged delivery of N-end rule substrates to the AAA+ ClpAP protease. Mol. Cell 43:217-28
-
(2011)
Mol. Cell
, vol.43
, pp. 217-228
-
-
Roman-Hernandez, G.1
Hou, J.Y.2
Grant, R.A.3
Sauer, R.T.4
Baker, T.A.5
-
153
-
-
17844393403
-
Allelic characterization of the leaf-variegated mutation var2 identifies the conserved amino acid residues of FtsH that are important for ATP hydrolysis and proteolysis
-
Sakamoto W, Miura E, Kaji Y, Okuno T, Nishizono M, Ogura T. 2004. Allelic characterization of the leaf-variegated mutation var2 identifies the conserved amino acid residues of FtsH that are important for ATP hydrolysis and proteolysis. Plant Mol. Biol. 56:705-16
-
(2004)
Plant Mol. Biol.
, vol.56
, pp. 705-716
-
-
Sakamoto, W.1
Miura, E.2
Kaji, Y.3
Okuno, T.4
Nishizono, M.5
Ogura, T.6
-
154
-
-
84903734722
-
Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation
-
Sako K, Yanagawa Y, Kanai T, Sato T, Seki M, et al. 2014. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. J. Proteome Res. 13:3223-30
-
(2014)
J. Proteome Res.
, vol.13
, pp. 3223-3230
-
-
Sako, K.1
Yanagawa, Y.2
Kanai, T.3
Sato, T.4
Seki, M.5
-
155
-
-
79959389010
-
AAA+ proteases: ATP-fueled machines of protein destruction
-
Sauer RT, Baker TA. 2011. AAA+ proteases: ATP-fueled machines of protein destruction. Annu. Rev. Biochem. 80:587-612
-
(2011)
Annu. Rev. Biochem.
, vol.80
, pp. 587-612
-
-
Sauer, R.T.1
Baker, T.A.2
-
156
-
-
84859876380
-
Deg proteases and their role in protein quality control and processing in different subcellular compartments of the plant cell
-
Schuhmann H, Adamska I. 2012. Deg proteases and their role in protein quality control and processing in different subcellular compartments of the plant cell. Physiol. Plant. 145:224-34
-
(2012)
Physiol. Plant.
, vol.145
, pp. 224-234
-
-
Schuhmann, H.1
Adamska, I.2
-
158
-
-
57749091634
-
TheDEG15 serine protease cleaves peroxisomal targeting signal 2-containing proteins in Arabidopsis
-
SchuhmannH,Huesgen PF,Gietl C, Adamska I. 2008. TheDEG15 serine protease cleaves peroxisomal targeting signal 2-containing proteins in Arabidopsis. Plant Physiol. 148:1847-56
-
(2008)
Plant Physiol.
, vol.148
, pp. 1847-1856
-
-
Schuhmann, H.1
Huesgen, P.F.2
Gietl, C.3
Adamska, I.4
-
160
-
-
35148872652
-
The E3 ligase AtCHIP ubiquitylates FtsH1, a component of the chloroplast FtsH protease, and affects protein degradation in chloroplasts
-
Shen G, Adam Z, Zhang H. 2007. The E3 ligase AtCHIP ubiquitylates FtsH1, a component of the chloroplast FtsH protease, and affects protein degradation in chloroplasts. Plant J. 52:309-21
-
(2007)
Plant J.
, vol.52
, pp. 309-321
-
-
Shen, G.1
Adam, Z.2
Zhang, H.3
-
161
-
-
33846041276
-
The chloroplast protease subunit ClpP4 is a substrate of the E3 ligase AtCHIP and plays an important role in chloroplast function
-
ShenG, Yan J, PasapulaV, Luo J, He C, et al. 2007. The chloroplast protease subunit ClpP4 is a substrate of the E3 ligase AtCHIP and plays an important role in chloroplast function. Plant J. 49:228-37
-
(2007)
Plant J.
, vol.49
, pp. 228-237
-
-
Shen, G.1
Yan, J.2
Pasapula, V.3
Luo, J.4
He, C.5
-
162
-
-
84893060553
-
Highly oxidized peroxisomes are selectively degraded via autophagy in Arabidopsis
-
Shibata M, Oikawa K, Yoshimoto K, Kondo M, Mano S, et al. 2013. Highly oxidized peroxisomes are selectively degraded via autophagy in Arabidopsis. Plant Cell 25:4967-83
-
(2013)
Plant Cell
, vol.25
, pp. 4967-4983
-
-
Shibata, M.1
Oikawa, K.2
Yoshimoto, K.3
Kondo, M.4
Mano, S.5
-
163
-
-
79952289354
-
Assembly of the chloroplast ATP-dependent Clp protease in Arabidopsis is regulated by the ClpT accessory proteins
-
Sjogren LL, Clarke AK. 2011. Assembly of the chloroplast ATP-dependent Clp protease in Arabidopsis is regulated by the ClpT accessory proteins. Plant Cell 23:322-32
-
(2011)
Plant Cell
, vol.23
, pp. 322-332
-
-
Sjogren, L.L.1
Clarke, A.K.2
-
164
-
-
84914167990
-
Mitochondrial ATP-dependent proteases in protection against accumulation of carbonylated proteins
-
Smakowska E,Czarna M, Janska H. 2014. Mitochondrial ATP-dependent proteases in protection against accumulation of carbonylated proteins. Mitochondrion 19:245-51
-
(2014)
Mitochondrion
, vol.19
, pp. 245-251
-
-
Smakowska, E.1
Czarna, M.2
Janska, H.3
-
166
-
-
84868316157
-
Loss of Lon1 in Arabidopsis changes the mitochondrial proteome leading to altered metabolite profiles and growth retardation without an accumulation of oxidative damage
-
Solheim C, Li L, Hatzopoulos P, Millar AH. 2012. Loss of Lon1 in Arabidopsis changes the mitochondrial proteome leading to altered metabolite profiles and growth retardation without an accumulation of oxidative damage. Plant Physiol. 160:1187-203
-
(2012)
Plant Physiol.
, vol.160
, pp. 1187-1203
-
-
Solheim, C.1
Li, L.2
Hatzopoulos, P.3
Millar, A.H.4
-
167
-
-
80053604348
-
Selecting protein N-terminal peptides by combined fractional diagonal chromatography
-
Staes A, Impens F, Van Damme P, Ruttens B, Goethals M, et al. 2011. Selecting protein N-terminal peptides by combined fractional diagonal chromatography. Nat. Protoc. 6:1130-41
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1130-1141
-
-
Staes, A.1
Impens, F.2
Van Damme, P.3
Ruttens, B.4
Goethals, M.5
-
168
-
-
84868259951
-
Crystal structure of Arabidopsis Deg2 protein reveals an internal PDZ ligand locking the hexameric resting state
-
Sun R, Fan H, Gao F, Lin Y, Zhang L, et al. 2012. Crystal structure of Arabidopsis Deg2 protein reveals an internal PDZ ligand locking the hexameric resting state. J. Biol. Chem. 287:37564-69
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 37564-37569
-
-
Sun, R.1
Fan, H.2
Gao, F.3
Lin, Y.4
Zhang, L.5
-
169
-
-
84877277610
-
The structures of Arabidopsis Deg5 and Deg8 reveal new insights into HtrA proteases
-
SunW, Gao F, Fan H, Shan X, Sun R, et al. 2013. The structures of Arabidopsis Deg5 and Deg8 reveal new insights into HtrA proteases. Acta Crystallogr. D 69:830-37
-
(2013)
Acta Crystallogr. D
, vol.69
, pp. 830-837
-
-
Sun, W.1
Gao, F.2
Fan, H.3
Shan, X.4
Sun, R.5
-
170
-
-
77951981274
-
The thylakoid protease Deg1 is involved in photosystem-II assembly in Arabidopsis thaliana
-
Sun X, Ouyang M, Guo J, Ma J, Lu C, et al. 2010. The thylakoid protease Deg1 is involved in photosystem-II assembly in Arabidopsis thaliana. Plant J. 62:240-49
-
(2010)
Plant J.
, vol.62
, pp. 240-249
-
-
Sun, X.1
Ouyang, M.2
Guo, J.3
Ma, J.4
Lu, C.5
-
172
-
-
84871796609
-
Processing peptidases in mitochondria and chloroplasts
-
Teixeira PF, Glaser E. 2013. Processing peptidases in mitochondria and chloroplasts. Biochim. Biophys. Acta 1833:360-70
-
(2013)
Biochim. Biophys. Acta
, vol.1833
, pp. 360-370
-
-
Teixeira, P.F.1
Glaser, E.2
-
173
-
-
84863685539
-
An Arabidopsis rhomboid protease has roles in the chloroplast and in flower development
-
Thompson EP, Smith SG,Glover BJ. 2012. An Arabidopsis rhomboid protease has roles in the chloroplast and in flower development. J. Exp. Bot. 63:3559-70
-
(2012)
J. Exp. Bot.
, vol.63
, pp. 3559-3570
-
-
Thompson, E.P.1
Smith, S.G.2
Glover, B.J.3
-
175
-
-
27144457117
-
Plant mitochondria contain at least two i-AAA-like complexes
-
Urantowka A, Knorpp C, Olczak T, Kolodziejczak M, Janska H. 2005. Plant mitochondria contain at least two i-AAA-like complexes. Plant Mol. Biol. 59:239-52
-
(2005)
Plant Mol. Biol.
, vol.59
, pp. 239-252
-
-
Urantowka, A.1
Knorpp, C.2
Olczak, T.3
Kolodziejczak, M.4
Janska, H.5
-
176
-
-
84928922495
-
Intramembrane proteases
-
Spec. Issue). Amsterdam Elsevier
-
Urban S, ed. 2013. Intramembrane proteases. Biochim Biophys. Acta 1828(12, Spec. Issue). Amsterdam: Elsevier
-
(2013)
Biochim Biophys. Acta
, vol.1828
, Issue.12
-
-
Urban, S.1
-
177
-
-
84885374946
-
Mechanisms and cellular functions of intramembrane proteases
-
Urban S. 2013. Mechanisms and cellular functions of intramembrane proteases. Biochim. Biophys. Acta 1828:2797-800
-
(2013)
Biochim. Biophys. Acta
, vol.1828
, pp. 2797-2800
-
-
Urban, S.1
-
178
-
-
77953284896
-
Prohibitins: Mitochondrial partners in development and stress response
-
Van Aken O, Whelan J, Van Breusegem F. 2010. Prohibitins: mitochondrial partners in development and stress response. Trends Plant Sci. 15:275-82
-
(2010)
Trends Plant Sci.
, vol.15
, pp. 275-282
-
-
Van Aken, O.1
Whelan, J.2
Van Breusegem, F.3
-
179
-
-
44949258132
-
Plant proteases: From phenotypes to molecular mechanisms
-
van der Hoorn RA. 2008. Plant proteases: from phenotypes to molecular mechanisms. Annu. Rev. Plant Biol. 59:191-223
-
(2008)
Annu. Rev. Plant Biol.
, vol.59
, pp. 191-223
-
-
Van Der Hoorn, R.A.1
-
180
-
-
84904988782
-
Meta-analysis of Arabidopsis thaliana phosphoproteomics data reveals compartmentalization of phosphorylation motifs
-
van Wijk KJ, Friso G, Walther D, Schulze WX. 2014. Meta-analysis of Arabidopsis thaliana phosphoproteomics data reveals compartmentalization of phosphorylation motifs. Plant Cell 26:2367-89
-
(2014)
Plant Cell
, vol.26
, pp. 2367-2389
-
-
Van Wijk, K.J.1
Friso, G.2
Walther, D.3
Schulze, W.X.4
-
181
-
-
79960683356
-
The N-end rule pathway and regulation by proteolysis
-
Varshavsky A. 2011. The N-end rule pathway and regulation by proteolysis. Protein Sci. 20:1298-345
-
(2011)
Protein Sci.
, vol.20
, pp. 1298-1345
-
-
Varshavsky, A.1
-
182
-
-
84855225838
-
Multitasking in the mitochondrion by the ATPdependent Lon protease
-
Venkatesh S, Lee J, Singh K, Lee I, Suzuki CK. 2012. Multitasking in the mitochondrion by the ATPdependent Lon protease. Biochim. Biophys. Acta 1823:56-66
-
(2012)
Biochim. Biophys. Acta
, vol.1823
, pp. 56-66
-
-
Venkatesh, S.1
Lee, J.2
Singh, K.3
Lee, I.4
Suzuki, C.K.5
-
183
-
-
84883792762
-
Novel highly sensitive, specific, and straightforward strategy for comprehensive N-terminal proteomics reveals unknown substrates of the mitochondrial peptidase Icp55
-
Venne AS, Vogtle FN,Meisinger C, Sickmann A, Zahedi RP. 2013. Novel highly sensitive, specific, and straightforward strategy for comprehensive N-terminal proteomics reveals unknown substrates of the mitochondrial peptidase Icp55. J. Proteome Res. 12:3823-30
-
(2013)
J. Proteome Res.
, vol.12
, pp. 3823-3830
-
-
Venne, A.S.1
Vogtle, F.N.2
Meisinger, C.3
Sickmann, A.4
Zahedi, R.P.5
-
184
-
-
77950993161
-
Chloroplast-derived enzyme cocktails hydrolyse lignocellulosic biomass and release fermentable sugars
-
VermaD,Kanagaraj A, Jin S, Singh ND,Kolattukudy PE,Daniell H. 2010. Chloroplast-derived enzyme cocktails hydrolyse lignocellulosic biomass and release fermentable sugars. Plant Biotechnol. J. 8:332-50
-
(2010)
Plant Biotechnol. J.
, vol.8
, pp. 332-350
-
-
Verma, D.1
Kanagaraj, A.2
Jin, S.3
Singh, N.D.4
Kolattukudy, P.E.5
Daniell, H.6
-
185
-
-
79959871792
-
Mitochondrial protein turnover: Role of the precursor intermediate peptidase Oct1 in protein stabilization
-
Vogtle FN, Prinz C, Kellermann J, Lottspeich F, Pfanner N, Meisinger C. 2011. Mitochondrial protein turnover: role of the precursor intermediate peptidase Oct1 in protein stabilization. Mol. Biol. Cell 22:2135-43
-
(2011)
Mol. Biol. Cell
, vol.22
, pp. 2135-2143
-
-
Vogtle, F.N.1
Prinz, C.2
Kellermann, J.3
Lottspeich, F.4
Pfanner, N.5
Meisinger, C.6
-
186
-
-
70349840621
-
Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability
-
Vogtle FN, Wortelkamp S, Zahedi RP, Becker D, Leidhold C, et al. 2009. Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability. Cell 139:428-39
-
(2009)
Cell
, vol.139
, pp. 428-439
-
-
Vogtle, F.N.1
Wortelkamp, S.2
Zahedi, R.P.3
Becker, D.4
Leidhold, C.5
-
187
-
-
67650149292
-
Chloroplasts autophagy during senescence of individually darkened leaves
-
Wada S, Ishida H. 2009. Chloroplasts autophagy during senescence of individually darkened leaves. Plant Signal. Behav. 4:565-67
-
(2009)
Plant Signal. Behav.
, vol.4
, pp. 565-567
-
-
Wada, S.1
Ishida, H.2
-
188
-
-
84859875507
-
FtsH proteases located in the plant chloroplast
-
Wagner R, Aigner H, Funk C. 2012. FtsH proteases located in the plant chloroplast. Physiol. Plant. 145:203-14
-
(2012)
Physiol. Plant.
, vol.145
, pp. 203-214
-
-
Wagner, R.1
Aigner, H.2
Funk, C.3
-
189
-
-
79959856338
-
Fitness analyses of Arabidopsis thaliana mutants depleted of FtsHmetalloproteases and characterization of three FtsH6 deletionmutants exposed to high light stress, senescence and chilling
-
Wagner R, Aigner H, Pruzinska A, Jankanpaa HJ, Jansson S, FunkC. 2011. Fitness analyses of Arabidopsis thaliana mutants depleted of FtsHmetalloproteases and characterization of three FtsH6 deletionmutants exposed to high light stress, senescence and chilling. New Phytol. 191:449-58
-
(2011)
New Phytol.
, vol.191
, pp. 449-458
-
-
Wagner, R.1
Aigner, H.2
Pruzinska, A.3
Jankanpaa, H.J.4
Jansson, S.5
Funk, C.6
-
190
-
-
33847226240
-
ClpS modulates but is not essential for bacterial N-end rule degradation
-
Wang KH, Sauer RT, Baker TA. 2007. ClpS modulates but is not essential for bacterial N-end rule degradation. Genes Dev. 21:403-8
-
(2007)
Genes Dev.
, vol.21
, pp. 403-408
-
-
Wang, K.H.1
Sauer, R.T.2
Baker, T.A.3
-
191
-
-
84878240552
-
Autophagy contributes to leaf starch degradation
-
Wang Y, Yu B, Zhao J, Guo J, Li Y, et al. 2013. Autophagy contributes to leaf starch degradation. Plant Cell 25:1383-99
-
(2013)
Plant Cell
, vol.25
, pp. 1383-1399
-
-
Wang, Y.1
Yu, B.2
Zhao, J.3
Guo, J.4
Li, Y.5
-
192
-
-
84900838657
-
Coordination of plantmitochondrial biogenesis: Keeping pace with cellular requirements
-
Welchen E, Garcia L, Mansilla N, GonzalezDH. 2014. Coordination of plantmitochondrial biogenesis: keeping pace with cellular requirements. Front. Plant Sci. 4:551
-
(2014)
Front. Plant Sci.
, vol.4
, pp. 551
-
-
Welchen, E.1
Garcia, L.2
Mansilla, N.3
Gonzalez, D.H.4
-
193
-
-
84871141687
-
A trapping approach reveals novel substrates and physiological functions of the essential protease FtsH in Escherichia coli
-
Westphal K, Langklotz S, Thomanek N, Narberhaus F. 2012. A trapping approach reveals novel substrates and physiological functions of the essential protease FtsH in Escherichia coli. J. Biol. Chem. 287:42962-71
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 42962-42971
-
-
Westphal, K.1
Langklotz, S.2
Thomanek, N.3
Narberhaus, F.4
-
194
-
-
65349094034
-
Loss of chloroplast protease SPPA function alters high light acclimation processes in Arabidopsis thaliana L (Heynh.)
-
Wetzel CM, Harmacek LD, Yuan LH, Wopereis JL, Chubb R, Turini P. 2009. Loss of chloroplast protease SPPA function alters high light acclimation processes in Arabidopsis thaliana L. (Heynh.). J. Exp. Bot. 60:1715-27
-
(2009)
J. Exp. Bot.
, vol.60
, pp. 1715-1727
-
-
Wetzel, C.M.1
Harmacek, L.D.2
Yuan, L.H.3
Wopereis, J.L.4
Chubb, R.5
Turini, P.6
-
195
-
-
84903442569
-
Global analysis of cellular proteolysis by selective enzymatic labeling of protein N-termini
-
Wiita AP, Seaman JE, Wells JA. 2014. Global analysis of cellular proteolysis by selective enzymatic labeling of protein N-termini. Methods Enzymol. 544:327-58
-
(2014)
Methods Enzymol.
, vol.544
, pp. 327-358
-
-
Wiita, A.P.1
Seaman, J.E.2
Wells, J.A.3
-
196
-
-
84890315317
-
Proteomic evidence for genetic epistasis: ClpR4 mutations switch leaf variegation to virescence in Arabidopsis
-
Wu W, Zhu Y, Ma Z, Sun Y, Quan Q, et al. 2013. Proteomic evidence for genetic epistasis: ClpR4 mutations switch leaf variegation to virescence in Arabidopsis. Plant J. 76:943-56
-
(2013)
Plant J.
, vol.76
, pp. 943-956
-
-
Wu, W.1
Zhu, Y.2
Ma, Z.3
Sun, Y.4
Quan, Q.5
-
197
-
-
84904043006
-
A pair of homoeolog ClpP5 genes underlies a virescent yellow-like mutant and its modifier in maize
-
Xing A, Williams ME, Bourett TM, Hu W, Hou Z, et al. 2014. A pair of homoeolog ClpP5 genes underlies a virescent yellow-like mutant and its modifier in maize. Plant J. 79 192-205
-
(2014)
Plant J.
, vol.79
, pp. 192-205
-
-
Xing, A.1
Williams, M.E.2
Bourett, T.M.3
Hu, W.4
Hou, Z.5
-
198
-
-
84903365485
-
Organ-specific quality control of plant peroxisomes is mediated by autophagy
-
Yoshimoto K, Shibata M, Kondo M, Oikawa K, Sato M, et al. 2014. Organ-specific quality control of plant peroxisomes is mediated by autophagy. J. Cell Sci. 127:1161-68
-
(2014)
J. Cell Sci.
, vol.127
, pp. 1161-1168
-
-
Yoshimoto, K.1
Shibata, M.2
Kondo, M.3
Oikawa, K.4
Sato, M.5
-
199
-
-
84903984317
-
Quality control of photosystem II: Direct imaging of the changes in the thylakoid structure and distribution ofFtsH proteases in spinach chloroplasts under light stress
-
Yoshioka-Nishimura M, Nanba D, Takaki T, Ohba C, Tsumura N, et al. 2014. Quality control of photosystem II: direct imaging of the changes in the thylakoid structure and distribution ofFtsH proteases in spinach chloroplasts under light stress. Plant Cell Physiol. 55:1255-65
-
(2014)
Plant Cell Physiol.
, vol.55
, pp. 1255-1265
-
-
Yoshioka-Nishimura, M.1
Nanba, D.2
Takaki, T.3
Ohba, C.4
Tsumura, N.5
-
200
-
-
84904258587
-
Quality control of photosystem II: The molecular basis for the action of FtsH protease and the dynamics of the thylakoid membranes
-
Yoshioka-Nishimura M, Yamamoto Y. 2014. Quality control of photosystem II: the molecular basis for the action of FtsH protease and the dynamics of the thylakoid membranes. J. Photochem. Photobiol. B 137:100-6
-
(2014)
J. Photochem. Photobiol. B
, vol.137
, pp. 100-106
-
-
Yoshioka-Nishimura, M.1
Yamamoto, Y.2
-
201
-
-
34548396828
-
Expression of thermostable microbial cellulases in the chloroplasts of nicotine-free tobacco
-
Yu LX, Gray BN, Rutzke CJ,Walker LP,Wilson DB, Hanson MR. 2007. Expression of thermostable microbial cellulases in the chloroplasts of nicotine-free tobacco. J. Biotechnol. 131:362-69
-
(2007)
J. Biotechnol.
, vol.131
, pp. 362-369
-
-
Yu, L.X.1
Gray, B.N.2
Rutzke, C.J.3
Walker, L.P.4
Wilson, D.B.5
Hanson, M.R.6
-
202
-
-
70349246174
-
Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism
-
Zybailov B, Friso G, Kim J, Rudella A, Rodriguez VR, et al. 2009. Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism. Mol. Cell. Proteomics 8:1789-810
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 1789-1810
-
-
Zybailov, B.1
Friso, G.2
Kim, J.3
Rudella, A.4
Rodriguez, V.R.5
-
203
-
-
44349099751
-
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome
-
Zybailov B, Rutschow H, Friso G, Rudella A, Emanuelsson O, et al. 2008. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. PLOS ONE 3:e1994
-
(2008)
PLOS ONE
, vol.3
, pp. e1994
-
-
Zybailov, B.1
Rutschow, H.2
Friso, G.3
Rudella, A.4
Emanuelsson, O.5
|