Proteolytic system of plant mitochondria

Physiologia Plantarum

Volumn 145, Issue 1, 2012, Pages 187-195

  Kwasniak, Malgorzata ^a   Pogorzelec, Lukasz ^a   Migdal, Iwona ^a   Smakowska, Elwira ^a   Janska, Hanna ^a  

^a UNIVERSITY OF WROC AW   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; ARABIDOPSIS PROTEIN; FTSH4 PROTEIN, ARABIDOPSIS; MEMBRANE PROTEIN; METALLOPROTEINASE; MITOCHONDRIAL PROCESSING PEPTIDASE; MITOCHONDRIAL PROTEIN;

ARABIDOPSIS; ENZYMOLOGY; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MITOCHONDRIAL MEMBRANE; MITOCHONDRION; PROTEIN DEGRADATION; REVIEW; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; YEAST;

ADENOSINE TRIPHOSPHATE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; MEMBRANE PROTEINS; METALLOENDOPEPTIDASES; METALLOPROTEASES; MITOCHONDRIA; MITOCHONDRIAL MEMBRANES; MITOCHONDRIAL PROTEINS; PROTEOLYSIS; SEQUENCE HOMOLOGY, AMINO ACID; SPECIES SPECIFICITY; YEASTS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; UNIDENTIFIED PLANT;

EID: 84859863110     PISSN: 00319317     EISSN: 13993054     Source Type: Journal    
DOI: 10.1111/j.1399-3054.2011.01542.x     Document Type: Review

References (62)

1. Adam Z, Adamska I, Nakabayashi K, Ostersetzer O, Haussuhl K, Manuell A, Zheng B, Vallon O, Rodermel SR, Shinozaki K, Clarke AK (2001) Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature. Plant Physiol 125: 1912-1918
2. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
3. Ayuso-Tejedor S, Nishikori S, Okuno T, Ogura T, Sancho J (2010) FtsH cleavage of non-native conformations of proteins. J Struct Biol 171: 117-124
4. Bassham DC (2009) Function and regulation of macroautophagy in plants. Biochim Biophys Acta 1793: 1397-1403
5. Bhushan S, Lefebvre B, Stahl A, Wright SJ, Bruce BD, Boutry M, Glaser E (2003) Dual targeting and function of a protease in mitochondria and chloroplasts. EMBO Rep 4: 1073-1078
6. Bhushan S, Ståhl A, Nilsson S, Lefebvre B, Seki M, Roth C, McWilliam D, Wright SJ, Liberles DA, Shinozaki K, Bruce BD, Boutry M, Glaser E (2005) Catalysis, subcellular localization, expression and evolution of the targeting peptides degrading protease, AtPreP2. Plant Cell Physiol 46: 985-996
7. Botos I, Melnikov EE, Cherry S, Khalatova AG, Rasulova FS, Tropea JE, Maurizi MR, Rotanova TV, Gustchina A, Wlodawer A (2004) Crystal structure of the AAA+ alpha domain of E. coli Lon protease at 1.9 Å resolution. J Struct Biol 146: 113-122
8. Braun HP, Emmermann M, Kruft V, Schmitz UK (1992) The general mitochondrial processing peptidase from potato is an integral part of cytochrome c reductase of the respiratory chain. EMBO J 11: 3219-3227
9. Chen J, Burke JJ, Velten J, Xin Z (2006) FtsH11 protease plays a critical role in Arabidopsis thermotolerance. Plant J 48: 73-84
10. Dessi P, Rudhe C, Glaser E (2000) Studies on the topology of the protein import channel in relation to the plant mitochondrial processing peptidase integrated into the cytochrome bc1 complex. Plant J 24: 637-644
11. Duby G, Boutry M (2002) Mitochondrial protein import machinery and targeting information. Plant Sci 162: 477-490
12. Eriksson AC, Glaser E (1992) Mitochondrial processing proteinase: a general processing proteinase of spinach leaf mitochondria is a membrane-bound enzyme. Biochim Biophys Acta 1140: 208-214
13. Esser K, Tursun B, Ingenhoven M, Michaelis G, Pratje E (2002) A novel two-step mechanism for removal of a mitochondrial signal sequence involves the mAAA complex and the putative rhomboid protease Pcp1. J Mol Biol 323: 835-843
14. Freeman M (2008) Rhomboid proteases and their biological functions. Annu Rev Genet 42: 191-210
15. Gakh O, Cavadini P, Isaya G (2002) Mitochondrial processing peptidases. Biochim Biophys Acta 1592: 63-77
16. Gibala M, Kicia M, Sakamoto W, Gola EM, Kubrakiewicz J, Smakowska E, Janska H (2009) The lack of mitochondrial AtFtsH4 protease alters Arabidopsis leaf morphology at the late stage of rosette development under short-day photoperiod. Plant J 59: 685-699
17. Glaser E, Sjöling S, Tanudji M, Whelan J (1998) Mitochondrial protein import in plants. Signals, sorting, targeting, processing and regulation. Plant Mol Biol 38: 311-338
18. Glaser E, Dessi P (1999) Integration of the mitochondrial processing peptidase into the cytochrome bc1 complex in plants. J Bioenerg Biomembr 31: 259-274
19. Glaser E, Nilsson S, Bhushan S (2006) Two novel mitochondrial and chloroplastic targeting-peptide degrading peptidasomes in A. thaliana, AtPreP1 and AtPreP2. Biol Chem 387: 1441-1447
20. Halperin T, Zheng B, Itzhaki H, Clarke AK, Adam Z (2001) Plant mitochondria contain proteolytic and regulatory subunits of the ATP-dependent Clp protease. Plant Mol Biol 45: 461-468
21. Herman C, Prakash S, Lu CZ, Matouschek A, Gross CA (2003) Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH. Mol Cell 11: 659-669
22. Huang S, Taylor NL, Whelan J, Millar AH (2009) Refining the definition of plant mitochondrial presequences through analysis of sorting signals, N-terminal modifications, and cleavage motifs. Plant Physiol 150: 1272-1285
23. Isaya G, Kalousek F, Fenton WA, Rosenberg LE (1991) Cleavage of precursors by the mitochondrial processing peptidase requires a compatible mature protein or an intermediate octapeptide. J Cell Biol 113: 65-76
24. Janska H (2005) ATP-dependent proteases in plant mitochondria: what do we know about them today? Physiol Plant 123: 399-405
25. Janska H, Piechota J, Kwasniak M (2010) ATP-dependent proteases in biogenesis and maintenance of plant mitochondria. Biochim Biophys Acta 1797: 1071-1075
26. 3 chamber for proteolysis. EMBO J 25: 1977-1986
27. Kalousek F, Neupert W, Omura T, Schatz G, Schmitz UK (1993) Uniform nomenclature for the mitochondrial peptidases cleaving precursors of mitochondrial proteins. Trends Biochem Sci 18: 249
28. Kambacheld M, Augustin S, Tatsuta T, Muller S, Langer T (2005) Role of the novel metallopeptidase Mop112 and saccharolysin for the complete degradation of proteins residing in different subcompartments of mitochondria. J Biol Chem 280: 20132-20139
29. Kambouris NG, Burke DJ, Creutz CE (1992) Cloning and characterization of a cysteine proteinase from Saccharomyces cerevisiae. J Biol Chem 267: 21570-21576
30. Käser M, Langer T (2000) Protein degradation in mitochondria. Semin Cell Dev Biol 11: 181-190
31. Käser M, Kambacheld M, Kisters-Woike B, Langer T (2003) Oma1, a novel membrane-bound metallopeptidase in mitochondria with activities overlapping with the m-AAA protease. J Biol Chem 278: 46414-46423
32. Kicia M, Gola EM, Janska H (2010) Mitochondrial protease AtFtsH4 protects ageing Arabidopsis rosettes against oxidative damage under short-day photoperiod. Plant Signal Behav 5: 126-128
33. Kmiec-Wisniewska B, Krumpe K, Urantowka A, Sakamoto W, Pratje E, Janska H (2008) Plant mitochondrial rhomboid, AtRBL12, has different substrate specificity from its yeast counterpart. Plant Mol Biol 68: 159-171
34. Kolodziejczak M, Kolaczkowska A, Szczesny B, Urantowka A, Knorpp C, Kieleczawa J, Janska H (2002) A higher plant mitochondrial homologue of the yeast m-AAA protease. Molecular cloning, localization, and putative function. J Biol Chem 277: 43792-43798
35. Kolodziejczak M, Gibala M, Urantowka A, Janska H (2007) The significance of Arabidopsis AAA proteases for activity and assembly/stability of mitochondrial OXPHOS complexes. Physiol Plant 129: 135-142
36. Kruft V, Eubel H, Jänsch L, Werhahn W, Braun HP (2001) Proteomic approach to identify novel mitochondrial proteins in Arabidopsis. Plant Physiol 127: 1694-1710
37. Leonhard K, Herrmann JM, Stuart RA, Mannhaupt G, Neupert W, Langer T (1996) AAA proteases with catalytic sites on opposite membrane surfaces comprise a proteolytic system for the ATP-dependent degradation of inner membrane proteins in mitochondria. EMBO J 15: 4218-4229
38. Luo W, Fang H, Green N (2006) Substrate specificity of inner membrane peptidase in yeast mitochondria. Mol Genet Genomics 275: 431-436
39. Millar AH, Sweetlove LJ, Giegé P, Leaver CJ (2001) Analysis of the Arabidopsis mitochondrial proteome. Plant Physiol 127: 1711-1727
40. Moberg P, Ståhl A, Bhushan S, Wright SJ, Eriksson A, Bruce BD, Glaser E (2003) Characterization of a novel zinc metalloprotease involved in degrading targeting peptides in mitochondria and chloroplasts. Plant J 36: 616-628
41. Nilsson Cederholm S, Bäckman HG, Pesaresi P, Leister D, Glaser E (2009) Deletion of an organellar peptidasome PreP affects early development in Arabidopsis thaliana. Plant Mol Biol 71: 497-508
42. Nolden M, Ehses S, Koppen M, Bernacchia A, Rugarli EI, Langer T (2005) The m-AAA protease defective in hereditary spastic paraplegia controls ribosome assembly in mitochondria. Cell 123: 277-289
43. Ostersetzer O, Kato Y, Adam Z, Sakamoto W (2007) Multiple intracellular locations of Lon protease in Arabidopsis: evidence for the localization of AtLon4 to chloroplasts. Plant Cell Physiol 48: 881-885
44. Paetzel M, Karla A, Strynadka NC, Dalbey RE (2002) Signal peptidases. Chem Rev 102: 4549-4580
45. Peltier JB, Ripoll DR, Friso G, Rudella A, Cai Y, Ytterberg J, Giacomelli L, Pillardy J, van Wijk KJ (2004) Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications. J Biol Chem 279: 4768-4781
46. Piechota J, Kolodziejczak M, Juszczak I, Sakamoto W, Janska H (2010) Identification and characterization of high molecular weight complexes formed by matrix AAA proteases and prohibitins in mitochondria of Arabidopsis thaliana. J Biol Chem 285: 12512-12521
47. Rigas S, Daras G, Laxa M, Marathias N, Fasseas C, Sweetlove LJ, Hatzopoulos P (2009a) Role of Lon1 protease in post-germinative growth and maintenance of mitochondrial function in Arabidopsis thaliana. New Phytol 181: 588-600
48. Rigas S, Daras G, Sweetlove LJ, Hatzopoulos P (2009b) Mitochondria biogenesis via Lon1 selective proteolysis: who dares to live for ever? Plant Signal Behav 4: 221-224
49. Sarria R, Lyznik A, Vallejos CE, Mackenzie SA (1998) A cytoplasmic male sterility-associated mitochondrial peptide in common bean is post-translationally regulated. Plant Cell 10: 1217-1228
50. Sjögren LL, Stanne TM, Zheng B, Sutinen S, Clarke AK (2006) Structural and functional insights into the chloroplast ATP-dependent Clp protease in Arabidopsis. Plant Cell 18: 2635-2649
51. Sjöling S, Glaser E (1998) Mitochondrial targeting peptides in plants. Trends Plant Sci 3: 136-140
52. Sokolenko A, Lerbs-Mache S, Altschmied L, Herrmann RG (1998) Clp protease complexes and their diversity in chloroplasts. Planta 207: 286-295
53. Ståhl A, Pavlov PF, Szigyarto C, Glaser E (2000) Rapid degradation of the presequence of the F1β precursor of ATP synthase inside mitochondria. Biochem J 349: 703-707
54. Ståhl A, Moberg P, Ytterberg J, Panfilov O, Brockenhuus Von Lowenhielm H, Nilsson F, Glaser E (2002) Isolation and identification of a novel mitochondrial metalloprotease (PreP) that degrades targeting presequences in plants. J Biol Chem 277: 41931-41939
55. Suno R, Niwa H, Tsuchiya D, Zhang X, Yoshida M, Morikawa K (2006) Structure of the whole cytosolic region of ATP-dependent protease FtsH. Mol Cell 22: 575-585
56. Taylor NL, Millar AH (2009) Long bugs to short plants - the Lon protease in protein stability and thermotolerance. New Phytol 181: 505-508
57. Urantówka A, Knorpp C, Olczak T, Kolodziejczak M, Janska H (2005) Plant mitochondria contain at least two i-AAA-like complexes. Plant Mol Biol 59: 239-252
58. Vögtle FN, Wortelkamp S, Zahedi RP, Becker D, Leidhold C, Gavaert K, Kellermann J, Voss W, Sickmann A, Pfanner N, Meisinger C (2009) Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability. Cell 139: 428-439
59. Wagner R, Aigner H, Pružinská A, Jänkänpää HJ, Jansson S, Funk C (2011) Fitness analyses of Arabidopsis thaliana mutants depleted of FtsH metalloproteases and characterization of three FtsH6 deletion mutants exposed to high light stress, senescence and chilling. New Phytol 191: 449-458
60. Wang J, Hartling JA, Flanagan JM (1997) The structure of ClpP at 2.3Å resolution suggests a model for ATP-dependent proteolysis. Cell 91: 447-456
61. Zeng X, Neupert W, Tzagoloff A (2007) The metalloprotease encoded by ATP23 has a dual function in processing and assembly of subunit 6 of mitochondrial ATPase. Mol Biol Cell 18: 617-626
62. Zhang XP, Sjöling S, Tanudji M, Somogyi L, Andreu D, Eriksson LE, Gräslund A, Whelan J, Glaser E (2001) Mutagenesis and computer modelling approach to study determinants for recognition of signal peptides by the mitochondrial processing peptidase. Plant J 27: 427-438