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Volumn 12, Issue , 2012, Pages

The family of Deg/HtrA proteases in plants

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; BACTERIA (MICROORGANISMS); BRYOPHYTA; CHLOROPHYTA; DICOTYLEDONEAE; TRACHEOPHYTA;

EID: 84859910974     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-12-52     Document Type: Article
Times cited : (33)

References (44)
  • 1
    • 0033520987 scopus 로고    scopus 로고
    • Posttranslational quality control: folding, refolding, and degrading proteins
    • 10.1126/science.286.5446.1888, 10583944
    • Wickner S, Maurizi MR, Gottesman S. Posttranslational quality control: folding, refolding, and degrading proteins. Science 1999, 286:1888-1893. 10.1126/science.286.5446.1888, 10583944.
    • (1999) Science , vol.286 , pp. 1888-1893
    • Wickner, S.1    Maurizi, M.R.2    Gottesman, S.3
  • 2
    • 0344824655 scopus 로고    scopus 로고
    • Proteolysis in bacterial regulatory circuits
    • 10.1146/annurev.cellbio.19.110701.153228, 14570582
    • Gottesman S. Proteolysis in bacterial regulatory circuits. Annu Rev Cell Dev Biol 2003, 19:565-587. 10.1146/annurev.cellbio.19.110701.153228, 14570582.
    • (2003) Annu Rev Cell Dev Biol , vol.19 , pp. 565-587
    • Gottesman, S.1
  • 3
    • 0023974826 scopus 로고
    • An Escherichia coli mutation preventing degradation of abnormal periplasmic proteins
    • 10.1073/pnas.85.5.1576, 279816, 3278319
    • Strauch KL, Beckwith J. An Escherichia coli mutation preventing degradation of abnormal periplasmic proteins. Proc Natl Acad Sci U S A 1988, 85:1576-1580. 10.1073/pnas.85.5.1576, 279816, 3278319.
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 1576-1580
    • Strauch, K.L.1    Beckwith, J.2
  • 4
    • 0023808092 scopus 로고
    • Sequence analysis and regulation of the htrA gene of Escherichia coli: a sigma 32-independent mechanism of heat-inducible transcription
    • 10.1093/nar/16.21.10053, 338836, 3057437
    • Lipinska B, Sharma S, Georgopoulos C. Sequence analysis and regulation of the htrA gene of Escherichia coli: a sigma 32-independent mechanism of heat-inducible transcription. Nucleic Acids Res 1988, 16:10053-10067. 10.1093/nar/16.21.10053, 338836, 3057437.
    • (1988) Nucleic Acids Res , vol.16 , pp. 10053-10067
    • Lipinska, B.1    Sharma, S.2    Georgopoulos, C.3
  • 6
    • 0036752926 scopus 로고    scopus 로고
    • The HtrA family of proteases: implications for protein composition and cell fate
    • 10.1016/S1097-2765(02)00658-5, 12408815
    • Clausen T, Southan C, Ehrmann M. The HtrA family of proteases: implications for protein composition and cell fate. Mol Cell 2002, 10:443-455. 10.1016/S1097-2765(02)00658-5, 12408815.
    • (2002) Mol Cell , vol.10 , pp. 443-455
    • Clausen, T.1    Southan, C.2    Ehrmann, M.3
  • 8
    • 57749091634 scopus 로고    scopus 로고
    • The DEG15 serine protease cleaves peroxisomal targeting signal 2-containing proteins in Arabidopsis thaliana
    • 10.1104/pp.108.125377, 2593680, 18952862
    • Schuhmann H, Huesgen PF, Gietl C, Adamska I. The DEG15 serine protease cleaves peroxisomal targeting signal 2-containing proteins in Arabidopsis thaliana. Plant Physiol 2008, 148:1847-1856. 10.1104/pp.108.125377, 2593680, 18952862.
    • (2008) Plant Physiol , vol.148 , pp. 1847-1856
    • Schuhmann, H.1    Huesgen, P.F.2    Gietl, C.3    Adamska, I.4
  • 9
    • 34250636225 scopus 로고    scopus 로고
    • Formation of DEG5 and DEG8 complexes and their involvement in the degradation of photodamaged photosystem II reaction center D1 protein in Arabidopsis
    • 10.1105/tpc.106.049510, 1913764, 17449806
    • Sun X, Peng L, Guo J, Chi W, Ma J, Lu C, Zhang L. Formation of DEG5 and DEG8 complexes and their involvement in the degradation of photodamaged photosystem II reaction center D1 protein in Arabidopsis. Plant Cell 2007, 19:1347-1361. 10.1105/tpc.106.049510, 1913764, 17449806.
    • (2007) Plant Cell , vol.19 , pp. 1347-1361
    • Sun, X.1    Peng, L.2    Guo, J.3    Chi, W.4    Ma, J.5    Lu, C.6    Zhang, L.7
  • 10
    • 33846949331 scopus 로고    scopus 로고
    • Novel peroxisomal protease Tysnd1 processes PTS1- and PTS2-containing enzymes involved in beta-oxidation of fatty acids
    • 10.1038/sj.emboj.7601525, 1794383, 17255948
    • Kurochkin IV, Mizuno Y, Konagaya A, Sakaki Y, Schonbach C, Okazaki Y. Novel peroxisomal protease Tysnd1 processes PTS1- and PTS2-containing enzymes involved in beta-oxidation of fatty acids. EMBO J 2007, 26:835-845. 10.1038/sj.emboj.7601525, 1794383, 17255948.
    • (2007) EMBO J , vol.26 , pp. 835-845
    • Kurochkin, I.V.1    Mizuno, Y.2    Konagaya, A.3    Sakaki, Y.4    Schonbach, C.5    Okazaki, Y.6
  • 11
    • 0033617146 scopus 로고    scopus 로고
    • A temperature-dependent switch from chaperone to protease in a widely conserved heat shock protein
    • 10.1016/S0092-8674(00)80743-6, 10319814
    • Spiess C, Beil A, Ehrmann M. A temperature-dependent switch from chaperone to protease in a widely conserved heat shock protein. Cell 1999, 97:339-347. 10.1016/S0092-8674(00)80743-6, 10319814.
    • (1999) Cell , vol.97 , pp. 339-347
    • Spiess, C.1    Beil, A.2    Ehrmann, M.3
  • 12
    • 0344953579 scopus 로고    scopus 로고
    • OMP peptide signals initiate the envelope-stress response by activating DegS protease via relief of inhibition mediated by its PDZ domain
    • 10.1016/S0092-8674(03)00203-4, 12679035
    • Walsh NP, Alba BM, Bose B, Gross CA, Sauer RT. OMP peptide signals initiate the envelope-stress response by activating DegS protease via relief of inhibition mediated by its PDZ domain. Cell 2003, 113:61-71. 10.1016/S0092-8674(03)00203-4, 12679035.
    • (2003) Cell , vol.113 , pp. 61-71
    • Walsh, N.P.1    Alba, B.M.2    Bose, B.3    Gross, C.A.4    Sauer, R.T.5
  • 13
    • 39449115415 scopus 로고    scopus 로고
    • The mitochondrial serine protease HtrA2/Omi: an overview
    • 10.1038/sj.cdd.4402291, 18174901
    • Vande Walle L, Lamkanfi M, Vandenabeele P. The mitochondrial serine protease HtrA2/Omi: an overview. Cell Death Differ 2008, 15:453-460. 10.1038/sj.cdd.4402291, 18174901.
    • (2008) Cell Death Differ , vol.15 , pp. 453-460
    • Vande Walle, L.1    Lamkanfi, M.2    Vandenabeele, P.3
  • 14
    • 17444411552 scopus 로고    scopus 로고
    • The family of Deg proteases in cyanobacteria and chloroplasts of higher plants
    • Huesgen PF, Schuhmann H, Adamska I. The family of Deg proteases in cyanobacteria and chloroplasts of higher plants. Physiol Plant 2005, 123:413-420.
    • (2005) Physiol Plant , vol.123 , pp. 413-420
    • Huesgen, P.F.1    Schuhmann, H.2    Adamska, I.3
  • 15
    • 33748630199 scopus 로고    scopus 로고
    • Cross genome comparisons of serine proteases in Arabidopsis and rice
    • 10.1186/1471-2164-7-200, 1560137, 16895613
    • Tripathi LP, Sowdhamini R. Cross genome comparisons of serine proteases in Arabidopsis and rice. BMC Genomics 2006, 7:200. 10.1186/1471-2164-7-200, 1560137, 16895613.
    • (2006) BMC Genomics , vol.7 , pp. 200
    • Tripathi, L.P.1    Sowdhamini, R.2
  • 16
    • 33847214594 scopus 로고    scopus 로고
    • Protease gene families in Populus and Arabidopsis
    • 10.1186/1471-2229-6-30, 1780054, 17181860
    • Garcia-Lorenzo M, Sjödin A, Jansson S, Funk C. Protease gene families in Populus and Arabidopsis. BMC Plant Biol 2006, 6:30. 10.1186/1471-2229-6-30, 1780054, 17181860.
    • (2006) BMC Plant Biol , vol.6 , pp. 30
    • Garcia-Lorenzo, M.1    Sjödin, A.2    Jansson, S.3    Funk, C.4
  • 17
    • 0032549650 scopus 로고    scopus 로고
    • Identification and characterization of DegP, a serine protease associated with the luminal side of the thylakoid membrane
    • 10.1074/jbc.273.12.7094, 9507020
    • Itzhaki H, Naveh L, Lindahl M, Cook M, Adam Z. Identification and characterization of DegP, a serine protease associated with the luminal side of the thylakoid membrane. J Biol Chem 1998, 273:7094-7098. 10.1074/jbc.273.12.7094, 9507020.
    • (1998) J Biol Chem , vol.273 , pp. 7094-7098
    • Itzhaki, H.1    Naveh, L.2    Lindahl, M.3    Cook, M.4    Adam, Z.5
  • 18
    • 0001596491 scopus 로고    scopus 로고
    • A chloroplast DegP2 protease performs the primary cleavage of the photodamaged D1 protein in plant photosystem II
    • 10.1093/emboj/20.4.713, 145409, 11179216
    • Haussuhl K, Andersson B, Adamska I. A chloroplast DegP2 protease performs the primary cleavage of the photodamaged D1 protein in plant photosystem II. EMBO J 2001, 20:713-722. 10.1093/emboj/20.4.713, 145409, 11179216.
    • (2001) EMBO J , vol.20 , pp. 713-722
    • Haussuhl, K.1    Andersson, B.2    Adamska, I.3
  • 19
    • 0036007922 scopus 로고    scopus 로고
    • Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction
    • 10.1105/tpc.010304, 150561, 11826309
    • Peltier JB, Emanuelsson O, Kalume DE, Ytterberg J, Friso G, Rudella A, Liberles DA, Soderberg L, Roepstorff P, von Heijne G, et al. Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Plant Cell 2002, 14:211-236. 10.1105/tpc.010304, 150561, 11826309.
    • (2002) Plant Cell , vol.14 , pp. 211-236
    • Peltier, J.B.1    Emanuelsson, O.2    Kalume, D.E.3    Ytterberg, J.4    Friso, G.5    Rudella, A.6    Liberles, D.A.7    Soderberg, L.8    Roepstorff, P.9    von Heijne, G.10
  • 20
    • 0037040944 scopus 로고    scopus 로고
    • Proteome map of the chloroplast lumen of Arabidopsis thaliana
    • 10.1074/jbc.M108575200, 11719511
    • Schubert M, Petersson UA, Haas BJ, Funk C, Schröder WP, Kieselbach T. Proteome map of the chloroplast lumen of Arabidopsis thaliana. J Biol Chem 2002, 277:8354-8365. 10.1074/jbc.M108575200, 11719511.
    • (2002) J Biol Chem , vol.277 , pp. 8354-8365
    • Schubert, M.1    Petersson, U.A.2    Haas, B.J.3    Funk, C.4    Schröder, W.P.5    Kieselbach, T.6
  • 21
    • 77949497673 scopus 로고    scopus 로고
    • The stromal chloroplast Deg7 protease participates in the repair of photosystem II after photoinhibition in Arabidopsis
    • 10.1104/pp.109.150722, 2832250, 20089771
    • Sun X, Fu T, Chen N, Guo J, Ma J, Zou M, Lu C, Zhang L. The stromal chloroplast Deg7 protease participates in the repair of photosystem II after photoinhibition in Arabidopsis. Plant Physiol 2010, 152:1263-1273. 10.1104/pp.109.150722, 2832250, 20089771.
    • (2010) Plant Physiol , vol.152 , pp. 1263-1273
    • Sun, X.1    Fu, T.2    Chen, N.3    Guo, J.4    Ma, J.5    Zou, M.6    Lu, C.7    Zhang, L.8
  • 22
    • 1042279117 scopus 로고    scopus 로고
    • In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database
    • 10.1105/tpc.017814, 341918, 14729914
    • Friso G, Giacomelli L, Ytterberg AJ, Peltier JB, Rudella A, Sun Q, Wijk KJ. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Plant Cell 2004, 16:478-499. 10.1105/tpc.017814, 341918, 14729914.
    • (2004) Plant Cell , vol.16 , pp. 478-499
    • Friso, G.1    Giacomelli, L.2    Ytterberg, A.J.3    Peltier, J.B.4    Rudella, A.5    Sun, Q.6    Wijk, K.J.7
  • 24
    • 84867657939 scopus 로고    scopus 로고
    • Deg proteases and their role in protein quality control in different subcellular compartments of the plant cell
    • Schuhmann H, Adamska I. Deg proteases and their role in protein quality control in different subcellular compartments of the plant cell. Physiol Plant 2011,
    • (2011) Physiol Plant
    • Schuhmann, H.1    Adamska, I.2
  • 25
    • 77951981274 scopus 로고    scopus 로고
    • The thylakoid protease Deg1 is involved in photosystem-II assembly in Arabidopsis thaliana
    • 10.1111/j.1365-313X.2010.04140.x, 20088900
    • Sun X, Ouyang M, Guo J, Ma J, Lu C, Adam Z, Zhang L. The thylakoid protease Deg1 is involved in photosystem-II assembly in Arabidopsis thaliana. Plant J 2010, 62:240-249. 10.1111/j.1365-313X.2010.04140.x, 20088900.
    • (2010) Plant J , vol.62 , pp. 240-249
    • Sun, X.1    Ouyang, M.2    Guo, J.3    Ma, J.4    Lu, C.5    Adam, Z.6    Zhang, L.7
  • 29
    • 23144452044 scopus 로고    scopus 로고
    • The HHpred interactive server for protein homology detection and structure prediction
    • 10.1093/nar/gki408, 1160169, 15980461
    • Soding J, Biegert A, Lupas AN. The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res 2005, 33:W244-248. 10.1093/nar/gki408, 1160169, 15980461.
    • (2005) Nucleic Acids Res , vol.33
    • Soding, J.1    Biegert, A.2    Lupas, A.N.3
  • 30
    • 79952852360 scopus 로고    scopus 로고
    • A new principle of oligomerization of plant DEG7 protease based on interactions of degenerated protease domains
    • 10.1042/BJ20101613, 3194040, 21247409
    • Schuhmann H, Mogg U, Adamska I. A new principle of oligomerization of plant DEG7 protease based on interactions of degenerated protease domains. Biochem J 2011, 435:167-174. 10.1042/BJ20101613, 3194040, 21247409.
    • (2011) Biochem J , vol.435 , pp. 167-174
    • Schuhmann, H.1    Mogg, U.2    Adamska, I.3
  • 31
    • 11844252119 scopus 로고    scopus 로고
    • A cut above the rest: the regulatory function of plant proteases
    • 10.1007/s00425-004-1407-2, 15517349
    • Schaller A. A cut above the rest: the regulatory function of plant proteases. Planta 2004, 220:183-197. 10.1007/s00425-004-1407-2, 15517349.
    • (2004) Planta , vol.220 , pp. 183-197
    • Schaller, A.1
  • 32
    • 79954522997 scopus 로고    scopus 로고
    • Recombinant Deg/HtrA proteases from Synechocystis sp. PCC 6803 differ in substrate specificity, biochemical characteristics and mechanism
    • 10.1042/BJ20102131, 3195437, 21332448
    • Huesgen PF, Miranda H, Lam XT, Perthold M, Schuhmann H, Adamska I, Funk C. Recombinant Deg/HtrA proteases from Synechocystis sp. PCC 6803 differ in substrate specificity, biochemical characteristics and mechanism. Biochem J 2011, 435:733-742. 10.1042/BJ20102131, 3195437, 21332448.
    • (2011) Biochem J , vol.435 , pp. 733-742
    • Huesgen, P.F.1    Miranda, H.2    Lam, X.T.3    Perthold, M.4    Schuhmann, H.5    Adamska, I.6    Funk, C.7
  • 33
    • 0037327022 scopus 로고    scopus 로고
    • The symbiotic birth and spread of plastids: how many times and whodunit?
    • Palmer JD. the symbiotic birth and spread of plastids: how many times and whodunit?. J Phycol 2003, 39:4-11.
    • (2003) J Phycol , vol.39 , pp. 4-11
    • Palmer, J.D.1
  • 35
    • 34548202141 scopus 로고    scopus 로고
    • An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens
    • 10.1186/1471-2148-7-130, 1952061, 17683536
    • Rensing SA, Ick J, Fawcett JA, Lang D, Zimmer A, Van de Peer Y, Reski R. An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens. BMC Evol Biol 2007, 7:130. 10.1186/1471-2148-7-130, 1952061, 17683536.
    • (2007) BMC Evol Biol , vol.7 , pp. 130
    • Rensing, S.A.1    Ick, J.2    Fawcett, J.A.3    Lang, D.4    Zimmer, A.5    Van de Peer, Y.6    Reski, R.7
  • 36
    • 13444282422 scopus 로고    scopus 로고
    • Arabidopsis nucleolar protein database (AtNoPDB)
    • 10.1093/nar/gki391, 540006, 15608277
    • Brown JW, Shaw PJ, Shaw P, Marshall DF. Arabidopsis nucleolar protein database (AtNoPDB). Nucleic Acids Res 2005, 33:D633-636. 10.1093/nar/gki391, 540006, 15608277.
    • (2005) Nucleic Acids Res , vol.33
    • Brown, J.W.1    Shaw, P.J.2    Shaw, P.3    Marshall, D.F.4
  • 37
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • 10.1093/nar/25.17.3389, 146917, 9254694
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 39
    • 34547571027 scopus 로고    scopus 로고
    • The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods
    • 10.1093/nar/gkm333, 1933118, 17526519
    • Moretti S, Armougom F, Wallace IM, Higgins DG, Jongeneel CV, Notredame C. The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. Nucleic Acids Res 2007, 35:W645-648. 10.1093/nar/gkm333, 1933118, 17526519.
    • (2007) Nucleic Acids Res , vol.35
    • Moretti, S.1    Armougom, F.2    Wallace, I.M.3    Higgins, D.G.4    Jongeneel, C.V.5    Notredame, C.6
  • 40
    • 45949105543 scopus 로고    scopus 로고
    • DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
    • 10.1186/1748-7188-3-6, 2430965, 18505568
    • Subramanian AR, Kaufmann M, Morgenstern B. DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment. Algorithms Mol Biol 2008, 3:6. 10.1186/1748-7188-3-6, 2430965, 18505568.
    • (2008) Algorithms Mol Biol , vol.3 , pp. 6
    • Subramanian, A.R.1    Kaufmann, M.2    Morgenstern, B.3
  • 41
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • 10.1093/bib/bbn013, 18372315
    • Katoh K, Toh H. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 2008, 9:286-298. 10.1093/bib/bbn013, 18372315.
    • (2008) Brief Bioinform , vol.9 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 42
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • 10.1093/nar/gkh340, 390337, 15034147
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 43
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 10.1080/10635150390235520, 14530136
    • Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52:696-704. 10.1080/10635150390235520, 14530136.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2


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