메뉴 건너뛰기




Volumn 64, Issue , 2013, Pages 583-607

The number, speed, and impact of plastid endosymbioses in eukaryotic evolution

Author keywords

Algae; Chloroplast; Organelle; Photosynthesis; Phylogeny

Indexed keywords

CHLOROPLAST; CYANOBACTERIUM; EUKARYOTE; EVOLUTION; GENETICS; METABOLISM; PLASTID; PROTEIN TRANSPORT; REVIEW; SYMBIOSIS;

EID: 84877684893     PISSN: 15435008     EISSN: 15452123     Source Type: Book Series    
DOI: 10.1146/annurev-arplant-050312-120144     Document Type: Review
Times cited : (341)

References (156)
  • 1
    • 84862894116 scopus 로고    scopus 로고
    • Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms
    • Allen AE, Moustafa A, Montsant A, Eckert A, Kroth PG, Bowler C. 2012. Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms. Mol. Biol. Evol. 29:367-79
    • (2012) Mol. Biol. Evol , vol.29 , pp. 367-379
    • Allen, A.E.1    Moustafa, A.2    Montsant, A.3    Eckert, A.4    Kroth, P.G.5    Bowler, C.6
  • 2
    • 0036860534 scopus 로고    scopus 로고
    • In vivo characterization of diatom multipartite plastid targeting signals
    • Apt KE, Zaslavkaia L, Lippmeier JC, Lang M, Kilian O, et al. 2002. In vivo characterization of diatom multipartite plastid targeting signals. J. Cell Sci. 115:4061-69
    • (2002) J. Cell Sci , vol.115 , pp. 4061-4069
    • Apt, K.E.1    Zaslavkaia, L.2    Lippmeier, J.C.3    Lang, M.4    Kilian, O.5
  • 3
    • 0038714278 scopus 로고    scopus 로고
    • Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans
    • Archibald JM, Rogers MB, Toop M, Ishida K, Keeling PJ. 2003. Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. Proc. Natl. Acad. Sci. USA 100:7678-83
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 7678-7683
    • Archibald, J.M.1    Rogers, M.B.2    Toop, M.3    Ishida, K.4    Keeling, P.J.5
  • 4
    • 1942444640 scopus 로고    scopus 로고
    • Dinoflagellate expressed sequence tags data indicatemassive transfer of chloroplast genes to the nuclear genome
    • Bachvaroff TR,ConcepcionGT, Rogers CR,HermanEM, Delwiche CF. 2004. Dinoflagellate expressed sequence tags data indicatemassive transfer of chloroplast genes to the nuclear genome. Protist 155:65-78
    • (2004) Protist , vol.155 , pp. 65-78
    • Bachvaroff, T.R.1    Concepcion, G.T.2    Rogers, C.R.3    Herman, E.M.4    Delwiche, C.F.5
  • 5
    • 23944527127 scopus 로고    scopus 로고
    • Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages
    • Bachvaroff TR, Sanchez Puerta MV,Delwiche CF. 2005. Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages. Mol. Biol. Evol. 22:1772-82
    • (2005) Mol. Biol. Evol , vol.22 , pp. 1772-1782
    • Bachvaroff, T.R.1    Sanchez Puerta, M.V.2    Delwiche, C.F.3
  • 6
    • 34047229926 scopus 로고    scopus 로고
    • Tic62: A protein family from metabolism to protein translocation
    • BalseraM, Stengel A, Soll J, Bolter B. 2007. Tic62: a protein family from metabolism to protein translocation. BMC Evol. Biol. 7:43
    • (2007) BMC Evol. Biol , vol.7 , pp. 43
    • Balsera, M.1    Stengel, A.2    Soll, J.3    Bolter, B.4
  • 7
    • 77953749915 scopus 로고    scopus 로고
    • Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles
    • Baurain D, Brinkmann H, Petersen J, Rodriguez-Ezpeleta N, Stechmann A, et al. 2010. Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles. Mol. Biol. Evol. 27:1698-709
    • (2010) Mol. Biol. Evol , vol.27 , pp. 1698-1709
    • Baurain, D.1    Brinkmann, H.2    Petersen, J.3    Rodriguez-Ezpeleta, N.4    Stechmann, A.5
  • 8
    • 0000732141 scopus 로고
    • Spumella elongata nov. comb., a colourless flagellate from soil
    • Belcher JH, Swale EMF. 1976. Spumella elongata nov. comb., a colourless flagellate from soil. Arch. Protistenkd. 118:215-20
    • (1976) Arch. Protistenkd , vol.118 , pp. 215-220
    • Belcher, J.H.1    Emf, S.2
  • 9
    • 0029105272 scopus 로고
    • Molecular evolutionary analyses of nuclear-encoded small subunit ribosomal RNA identify an independent rhizopod lineage containing the Euglyphidae and the Chlorarachniophyta
    • Bhattacharya D, Helmchen T, Melkonian M. 1995. Molecular evolutionary analyses of nuclear-encoded small subunit ribosomal RNA identify an independent rhizopod lineage containing the Euglyphidae and the Chlorarachniophyta. J. Eukaryot. Microbiol. 42:64-68
    • (1995) J. Eukaryot. Microbiol , vol.42 , pp. 64-68
    • Bhattacharya, D.1    Helmchen, T.2    Melkonian, M.3
  • 10
    • 20644433743 scopus 로고    scopus 로고
    • Do plastid-related characters support the chromalveolate hypothesis?
    • Bodyl A. 2005. Do plastid-related characters support the chromalveolate hypothesis? J. Phycol. 41:712-19
    • (2005) J. Phycol , vol.41 , pp. 712-719
    • Bodyl, A.1
  • 11
    • 70549088079 scopus 로고    scopus 로고
    • Early steps in plastid evolution: Current ideas and controversies
    • Bodyl A,Mackiewicz P, Stiller JW. 2009. Early steps in plastid evolution: current ideas and controversies. Bioessays 31:1219-32
    • (2009) Bioessays , vol.31 , pp. 1219-1232
    • Bodyl, A.1    Mackiewicz, P.2    Stiller, J.W.3
  • 12
    • 60949088852 scopus 로고    scopus 로고
    • Chromalveolate plastids: Direct descent or multiple endosymbioses?
    • Bodyl A, Stiller JW, Mackiewicz P. 2009. Chromalveolate plastids: direct descent or multiple endosymbioses? Trends Ecol. Evol. 24:119-21
    • (2009) Trends Ecol. Evol , vol.24 , pp. 119-121
    • Bodyl, A.1    Stiller, J.W.2    Mackiewicz, P.3
  • 13
    • 79954779971 scopus 로고    scopus 로고
    • Making new out of old: Recycling and modification of an ancient protein translocation system during eukaryotic evolution. Mechanistic comparison and phylogenetic analysis of ERAD, SELMA and the peroxisomal importomer
    • Bolte K, Gruenheit N, Felsner G, Sommer MS, Maier UG, Hempel F. 2011. Making new out of old: recycling and modification of an ancient protein translocation system during eukaryotic evolution. Mechanistic comparison and phylogenetic analysis of ERAD, SELMA and the peroxisomal importomer. Bioessays 33:368-76
    • (2011) Bioessays , vol.33 , pp. 368-376
    • Bolte, K.1    Gruenheit, N.2    Felsner, G.3    Sommer, M.S.4    Maier, U.G.5    Hempel, F.6
  • 14
    • 84862676601 scopus 로고    scopus 로고
    • Aggregative multicellularity evolved independently in the eukaryotic supergroup Rhizaria
    • Brown MW, Kolisko M, Silberman JD, Roger AJ. 2012. Aggregative multicellularity evolved independently in the eukaryotic supergroup Rhizaria. Curr. Biol. 22:1123-27
    • (2012) Curr. Biol , vol.22 , pp. 1123-1127
    • Brown, M.W.1    Kolisko, M.2    Silberman, J.D.3    Roger, A.J.4
  • 15
    • 84865853707 scopus 로고    scopus 로고
    • Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin
    • Burki F, Flegontov P, ObornikM, Cihlar J, Pain A, et al. 2012. Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin. Genome Biol. Evol. 4:623-35
    • (2012) Genome Biol. Evol , vol.4 , pp. 623-635
    • Burki, F.1    Flegontov, P.2    Obornikm Cihlar, J.3    Pain, A.4
  • 16
    • 73149097943 scopus 로고    scopus 로고
    • Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, Telonemia and Centroheliozoa, are related to photosynthetic chromalveolates
    • Burki F, Inagaki Y, Brate J, Archibald JM, Keeling PJ, et al. 2009. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, Telonemia and Centroheliozoa, are related to photosynthetic chromalveolates. Genome Biol. Evol. 1:231-38
    • (2009) Genome Biol. Evol , vol.1 , pp. 231-238
    • Burki, F.1    Inagaki, Y.2    Brate, J.3    Archibald, J.M.4    Keeling, P.J.5
  • 17
    • 78649596172 scopus 로고    scopus 로고
    • Evolution of Rhizaria: New insights from phylogenomic analysis of uncultivated protists
    • Burki F, Kudryavtsev A, Matz MV, Aglyamova GV, Bulman S, et al. 2010. Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists. BMC Evol. Biol. 10:377
    • (2010) BMC Evol. Biol , vol.10 , pp. 377
    • Burki, F.1    Kudryavtsev, A.2    Matz, M.V.3    Aglyamova, G.V.4    Bulman, S.5
  • 18
    • 84859945474 scopus 로고    scopus 로고
    • The evolutionary history of haptophytes and cryptophytes: Phylogenomic evidence for separate origins
    • Burki F, Okamoto N, Pombert JF, Keeling PJ. 2012. The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins. Proc. R. Soc. B 279:2246-54
    • (2012) Proc. R. Soc. B , vol.279 , pp. 2246-2254
    • Burki, F.1    Okamoto, N.2    Pombert, J.F.3    Keeling, P.J.4
  • 20
    • 46949092431 scopus 로고    scopus 로고
    • Phylogenomics reveals a new "megagroup" including most photosynthetic eukaryotes
    • Burki F, Shalchian-Tabrizi K, Pawlowski J. 2008. Phylogenomics reveals a new "megagroup" including most photosynthetic eukaryotes. Biol. Lett. 4:366-69
    • (2008) Biol. Lett , vol.4 , pp. 366-369
    • Burki, F.1    Shalchian-Tabrizi, K.2    Pawlowski, J.3
  • 22
    • 0000665743 scopus 로고
    • The kingdom Chromista: Origin and systematics
    • Cavalier-Smith T. 1986. The kingdom Chromista: origin and systematics. Prog. Phycol. Res. 4:309-47
    • (1986) Prog. Phycol. Res , vol.4 , pp. 309-347
    • Cavalier-Smith, T.1
  • 23
    • 0032838597 scopus 로고    scopus 로고
    • Principles of protein and lipid targeting in secondary symbiogenesis: Euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree
    • Cavalier-Smith T. 1999. Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J. Eukaryot. Microbiol. 46: 347-66
    • (1999) J. Eukaryot. Microbiol , vol.46 , pp. 347-366
    • Cavalier-Smith, T.1
  • 24
    • 0842292828 scopus 로고    scopus 로고
    • Chromalveolate diversity and cell megaevolution: Interplay of membranes, genomes and cytoskeleton
    • ed. RP Hirt, D Horner, London Taylor and Francis
    • Cavalier-Smith T. 2004. Chromalveolate diversity and cell megaevolution: interplay of membranes, genomes and cytoskeleton. In Organelles, Genomes and Eukaryotic Evolution, ed. RP Hirt, D Horner, pp. 71-103. London: Taylor and Francis
    • (2004) Organelles, Genomes and Eukaryotic Evolution , pp. 71-103
    • Cavalier-Smith, T.1
  • 25
    • 84985154309 scopus 로고
    • Protozoa as hosts for endosymbioses and the conversion of symbionts into organelles
    • Cavalier-Smith T, Lee JJ. 1985. Protozoa as hosts for endosymbioses and the conversion of symbionts into organelles. J. Protozool. 32:376-79
    • (1985) J. Protozool , vol.32 , pp. 376-379
    • Cavalier-Smith, T.1    Lee, J.J.2
  • 26
    • 0031193622 scopus 로고    scopus 로고
    • Ribosomal RNA analysis indicates a benthic pennate diatom ancestry for the endosymbionts of the dinoflagellates Peridinium foliaceum and Peridinium balticum (Pyrrhophyta)
    • Chesnick JM, Hooistra WH, Wellbrock U, Medlin LK. 1997. Ribosomal RNA analysis indicates a benthic pennate diatom ancestry for the endosymbionts of the dinoflagellates Peridinium foliaceum and Peridinium balticum (Pyrrhophyta). J. Eukaryot. Microbiol. 44:314-20
    • (1997) J. Eukaryot. Microbiol , vol.44 , pp. 314-320
    • Chesnick, J.M.1    Hooistra, W.H.2    Wellbrock, U.3    Medlin, L.K.4
  • 27
    • 0033789676 scopus 로고    scopus 로고
    • Evidence for nucleomorph to host nucleus gene transfer: Light-harvesting complex proteins from cryptomonads and chlorarachniophytes
    • Deane JA, Fraunholz M, Su V, Maier UG, Martin W, et al. 2000. Evidence for nucleomorph to host nucleus gene transfer: light-harvesting complex proteins from cryptomonads and chlorarachniophytes. Protist 151:239-52
    • (2000) Protist , vol.151 , pp. 239-252
    • Deane, J.A.1    Fraunholz, M.2    Su, V.3    Maier, U.G.4    Martin, W.5
  • 28
    • 84866394866 scopus 로고    scopus 로고
    • Reevaluating the green contribution to diatom genomes
    • Deschamps P, Moreira D. 2012. Reevaluating the green contribution to diatom genomes. Genome Biol. Evol. 4:683-88
    • (2012) Genome Biol. Evol , vol.4 , pp. 683-688
    • Deschamps, P.1    Moreira, D.2
  • 29
    • 0014567607 scopus 로고
    • Observations on the fine structure of the eyespot and associated organelles in the dinoflagellate Glenodinium foliaceum
    • Dodge JD. 1969. Observations on the fine structure of the eyespot and associated organelles in the dinoflagellate Glenodinium foliaceum. J. Cell Sci. 5:479-93
    • (1969) J. Cell Sci , vol.5 , pp. 479-493
    • Dodge, J.D.1
  • 30
    • 33748598232 scopus 로고    scopus 로고
    • Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote
    • Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, et al. 2006. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. PLoS Biol. 4:e286
    • (2006) PLoS Biol , vol.4
    • Eisen, J.A.1    Coyne, R.S.2    Wu, M.3    Wu, D.4    Thiagarajan, M.5
  • 31
    • 67651154514 scopus 로고    scopus 로고
    • The RAB family GTPase Rab1A from Plasmodium falciparum defines a unique paralog shared by chromalveolates and rhizaria
    • Elias M, Patron NJ, Keeling PJ. 2009. The RAB family GTPase Rab1A from Plasmodium falciparum defines a unique paralog shared by chromalveolates and rhizaria. J. Eukaryot. Microbiol. 56:348-56
    • (2009) J. Eukaryot. Microbiol , vol.56 , pp. 348-356
    • Elias, M.1    Patron, N.J.2    Keeling, P.J.3
  • 35
    • 0035103466 scopus 로고    scopus 로고
    • Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids
    • Fast NM, Kissinger JC, Roos DS, Keeling PJ. 2001. Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids. Mol. Biol. Evol. 18:418-26
    • (2001) Mol. Biol. Evol , vol.18 , pp. 418-426
    • Fast, N.M.1    Kissinger, J.C.2    Roos, D.S.3    Keeling, P.J.4
  • 36
    • 79954771065 scopus 로고    scopus 로고
    • ERAD components in organisms with complex red plastids suggest recruitment of a preexisting protein transport pathway for the periplastid membrane
    • Felsner G, Sommer MS, Gruenheit N, Hempel F, Moog D, et al. 2011. ERAD components in organisms with complex red plastids suggest recruitment of a preexisting protein transport pathway for the periplastid membrane. Genome Biol. Evol. 3:140-50
    • (2011) Genome Biol. Evol , vol.3 , pp. 140-150
    • Felsner, G.1    Sommer, M.S.2    Gruenheit, N.3    Hempel, F.4    Moog, D.5
  • 38
    • 0037738615 scopus 로고    scopus 로고
    • The apicoplast: A plastid in Plasmodium falciparum and other apicomplexan parasites
    • Foth BJ,McFadden GI. 2003. The apicoplast: a plastid in Plasmodium falciparum and other apicomplexan parasites. Int. Rev. Cytol. 224:57-110
    • (2003) Int. Rev. Cytol , vol.224 , pp. 57-110
    • Foth, B.J.1    McFadden, G.I.2
  • 40
    • 56449118832 scopus 로고    scopus 로고
    • Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis
    • Frommolt R, Werner S, Paulsen H, Goss R,Wilhelm C, et al. 2008. Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis. Mol. Biol. Evol. 25:2653-67
    • (2008) Mol. Biol. Evol , vol.25 , pp. 2653-2667
    • Frommolt, R.1    Werner, S.2    Paulsen, H.3    Goss, R.4    Wilhelm, C.5
  • 42
  • 45
    • 67649435514 scopus 로고    scopus 로고
    • Multigene evidence for the placement of a heterotrophic amoeboid lineage Leukarachnion sp. among photosynthetic stramenopiles
    • Grant J,Tekle YI, Anderson OR, Patterson DJ, Katz LA. 2009. Multigene evidence for the placement of a heterotrophic amoeboid lineage Leukarachnion sp. among photosynthetic stramenopiles. Protist 160:376-85
    • (2009) Protist , vol.160 , pp. 376-385
    • Grant, J.1    Tekle, Y.I.2    Anderson, O.R.3    Patterson, D.J.4    Katz, L.A.5
  • 46
    • 37549066871 scopus 로고    scopus 로고
    • Plastid isoprenoid metabolism in the oyster parasite Perkinsus marinus connects dinoflagellates and malaria pathogens - New impetus for studying alveolates
    • Grauvogel C, Reece KS, Brinkmann H, Petersen J. 2007. Plastid isoprenoid metabolism in the oyster parasite Perkinsus marinus connects dinoflagellates and malaria pathogens - new impetus for studying alveolates. J. Mol. Evol. 65:725-29
    • (2007) J. Mol. Evol , vol.65 , pp. 725-729
    • Grauvogel, C.1    Reece, K.S.2    Brinkmann, H.3    Petersen, J.4
  • 47
    • 1942540766 scopus 로고    scopus 로고
    • The chloroplast genome of dinoflagellates - A reduced instruction set?
    • Green BR. 2004. The chloroplast genome of dinoflagellates - a reduced instruction set? Protist 155:23-31
    • (2004) Protist , vol.155 , pp. 23-31
    • Green, B.R.1
  • 48
    • 0242584809 scopus 로고    scopus 로고
    • Phylogenetic evidence for the cryptophyte origin of the plastid of Dinophysis (Dinophysiales, Dinophyceae)
    • Hackett JD, Maranda L, Yoon HS, Bhattacharya D. 2003. Phylogenetic evidence for the cryptophyte origin of the plastid of Dinophysis (Dinophysiales, Dinophyceae). J. Phycol. 39:440-48
    • (2003) J. Phycol , vol.39 , pp. 440-448
    • Hackett, J.D.1    Maranda, L.2    Yoon, H.S.3    Bhattacharya, D.4
  • 49
    • 34547754024 scopus 로고    scopus 로고
    • Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of Rhizaria with chromalveolates
    • Hackett JD, Yoon HS, Li S, Reyes-Prieto A, Rummele SE, Bhattacharya D. 2007. Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of Rhizaria with chromalveolates. Mol. Biol. Evol. 24:1702-13
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1702-1713
    • Hackett, J.D.1    Yoon, H.S.2    Li, S.3    Reyes-Prieto, A.4    Rummele, S.E.5    Bhattacharya, D.6
  • 50
    • 1242265736 scopus 로고    scopus 로고
    • Migration of the plastid genome to the nucleus in a peridinin dinoflagellate
    • Hackett JD, Yoon HS, Soares MB, Bonaldo MF, Casavant TL, et al. 2004. Migration of the plastid genome to the nucleus in a peridinin dinoflagellate. Curr. Biol. 14:213-18
    • (2004) Curr. Biol , vol.14 , pp. 213-218
    • Hackett, J.D.1    Yoon, H.S.2    Soares, M.B.3    Bonaldo, M.F.4    Casavant, T.L.5
  • 51
    • 4644237400 scopus 로고    scopus 로고
    • Comparative analysis of the complete plastid genome sequence of the red alga Gracilaria tenuistipitata var. liui provides insights into the evolution of rhodoplasts and their relationship to other plastids
    • Hagopian JC, Reis M, Kitajima JP, Bhattacharya D, de Oliveira MC. 2004. Comparative analysis of the complete plastid genome sequence of the red alga Gracilaria tenuistipitata var. liui provides insights into the evolution of rhodoplasts and their relationship to other plastids. J. Mol. Evol. 59:464-77
    • (2004) J. Mol. Evol , vol.59 , pp. 464-477
    • Hagopian, J.C.1    Reis, M.2    Kitajima, J.P.3    Bhattacharya, D.4    De Oliveira, M.C.5
  • 52
    • 78650432850 scopus 로고    scopus 로고
    • Slugs' last meals: Molecular identification of sequestered chloroplasts from different algal origins in Sacoglossa (Opisthobranchia, Gastropoda)
    • Handeler K, Wagele H, Wahrmund U, Rudinger M, Knoop V. 2010. Slugs' last meals: molecular identification of sequestered chloroplasts from different algal origins in Sacoglossa (Opisthobranchia, Gastropoda). Mol. Ecol. Resour. 10:968-78
    • (2010) Mol. Ecol. Resour , vol.10 , pp. 968-978
    • Handeler, K.1    Wagele, H.2    Wahrmund, U.3    Rudinger, M.4    Knoop, V.5
  • 54
    • 0344440735 scopus 로고    scopus 로고
    • Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids
    • Harper JT, Keeling PJ. 2003. Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. Mol. Biol. Evol. 20:1730-35
    • (2003) Mol. Biol. Evol , vol.20 , pp. 1730-1735
    • Harper, J.T.1    Keeling, P.J.2
  • 55
    • 13244270095 scopus 로고    scopus 로고
    • On themonophyly of the chromalveolates using a six-protein phylogeny of eukaryotes
    • Harper JT,Waanders E, Keeling PJ. 2005. On themonophyly of the chromalveolates using a six-protein phylogeny of eukaryotes. Int. J. Syst. Evol. Microbiol. 55:487-96
    • (2005) Int. J. Syst. Evol. Microbiol , vol.55 , pp. 487-496
    • Harper, J.T.1    Waanders, E.2    Keeling, P.J.3
  • 56
    • 67749095912 scopus 로고    scopus 로고
    • ERAD-derived preprotein transport across the second outermost plastid membrane of diatoms
    • Hempel F, Bullmann L, Lau J, Zauner S, Maier UG. 2009. ERAD-derived preprotein transport across the second outermost plastid membrane of diatoms. Mol. Biol. Evol. 26:1781-90
    • (2009) Mol. Biol. Evol , vol.26 , pp. 1781-1790
    • Hempel, F.1    Bullmann, L.2    Lau, J.3    Zauner, S.4    Maier, U.G.5
  • 57
    • 79958773671 scopus 로고    scopus 로고
    • Nucleus-and nucleomorph-targeted histone proteins in a chlorarachniophyte alga
    • Hirakawa Y, Burki F, Keeling PJ. 2011. Nucleus-and nucleomorph-targeted histone proteins in a chlorarachniophyte alga. Mol. Microbiol. 80:1439-49
    • (2011) Mol. Microbiol , vol.80 , pp. 1439-1449
    • Hirakawa, Y.1    Burki, F.2    Keeling, P.J.3
  • 58
    • 84857705086 scopus 로고    scopus 로고
    • Genome-based reconstruction of the protein import machinery in the secondary plastid of a chlorarachniophyte alga
    • Hirakawa Y, Burki F, Keeling PJ. 2012. Genome-based reconstruction of the protein import machinery in the secondary plastid of a chlorarachniophyte alga. Eukaryot. Cell 11:324-33
    • (2012) Eukaryot. Cell , vol.11 , pp. 324-333
    • Hirakawa, Y.1    Burki, F.2    Keeling, P.J.3
  • 59
    • 77953729516 scopus 로고    scopus 로고
    • Characterization of periplastidal compartmenttargeting signals in chlorarachniophytes
    • Hirakawa Y, Gile GH,Ota S, Keeling PJ, IshidaK. 2010. Characterization of periplastidal compartmenttargeting signals in chlorarachniophytes. Mol. Biol. Evol. 27:1538-45
    • (2010) Mol. Biol. Evol , vol.27 , pp. 1538-1545
    • Hirakawa, Y.1    Gile, G.H.2    Ota, S.3    Keeling, P.J.4    Ishida, K.5
  • 60
    • 69149099275 scopus 로고    scopus 로고
    • Protein targeting into secondary plastids of chlorarachniophytes
    • Hirakawa Y, Nagamune K, Ishida K. 2009. Protein targeting into secondary plastids of chlorarachniophytes. Proc. Natl. Acad. Sci. USA 106:12820-25
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 12820-12825
    • Hirakawa, Y.1    Nagamune, K.2    Ishida, K.3
  • 61
    • 33748747126 scopus 로고    scopus 로고
    • Serial replacement of a diatom endosymbiont in the marine dinoflagellate Peridinium quinquecorne (Peridinales, Dinophyceae)
    • Horiguchi T, Takano Y. 2006. Serial replacement of a diatom endosymbiont in the marine dinoflagellate Peridinium quinquecorne (Peridinales, Dinophyceae). Phycol. Res. 54:193-200
    • (2006) Phycol. Res , vol.54 , pp. 193-200
    • Horiguchi, T.1    Takano, Y.2
  • 63
    • 39549122214 scopus 로고    scopus 로고
    • Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids?
    • Huang J, Gogarten JP. 2007. Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids? Genome Biol. 8:R99
    • (2007) Genome Biol , vol.8
    • Huang, J.1    Gogarten, J.P.2
  • 64
    • 21144435581 scopus 로고    scopus 로고
    • Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum
    • Huang J, Mullapudi N, Lancto CA, Scott M, Abrahamsen MS, Kissinger JC. 2004. Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum. Genome Biol. 5:R88
    • (2004) Genome Biol , vol.5
    • Huang, J.1    Mullapudi, N.2    Lancto, C.A.3    Scott, M.4    Abrahamsen, M.S.5    Kissinger, J.C.6
  • 65
    • 84865191075 scopus 로고    scopus 로고
    • Tertiary endosymbiosis in two dinotoms has generated little change in the mitochondrial genomes of their dinoflagellate hosts and diatom endosymbionts
    • Imanian B, Pombert JF, Dorrell RG, Burki F, Keeling PJ. 2012. Tertiary endosymbiosis in two dinotoms has generated little change in the mitochondrial genomes of their dinoflagellate hosts and diatom endosymbionts. PLoS ONE 7:e43763
    • (2012) PLoS ONE , vol.7
    • Imanian, B.1    Pombert, J.F.2    Dorrell, R.G.3    Burki, F.4    Keeling, P.J.5
  • 66
    • 0034526555 scopus 로고    scopus 로고
    • Evolutionary relationship between dinoflagellates bearing obligate diatom endosymbionts: Insight into tertiary endosymbiosis
    • Inagaki Y, Dacks JB, DoolittleWF, Watanabe KI, Ohama T. 2000. Evolutionary relationship between dinoflagellates bearing obligate diatom endosymbionts: insight into tertiary endosymbiosis. Int. J. Syst. Evol. Microbiol. 50:2075-81
    • (2000) Int. J. Syst. Evol. Microbiol , vol.50 , pp. 2075-2081
    • Inagaki, Y.1    Dacks, J.B.2    Doolittle, W.F.3    Watanabe, K.I.4    Ohama, T.5
  • 67
    • 0037047078 scopus 로고    scopus 로고
    • Second-and third-hand chloroplasts in dinoflagellates: Phylogeny of oxygenevolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont
    • Ishida K, Green BR. 2002. Second-and third-hand chloroplasts in dinoflagellates: phylogeny of oxygenevolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont. Proc. Natl. Acad. Sci. USA 99:9294-99
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 9294-9299
    • Ishida, K.1    Green, B.R.2
  • 69
    • 0034608870 scopus 로고    scopus 로고
    • Galactolipid deficiency and abnormal chloroplast development in the ArabidopsisMGDsynthase 1 mutant
    • Jarvis P, Dormann P, Peto CA, Lutes J, Benning C, Chory J. 2000. Galactolipid deficiency and abnormal chloroplast development in the ArabidopsisMGDsynthase 1 mutant. Proc.Natl. Acad. Sci. USA 97:8175-79
    • (2000) Proc.Natl. Acad. Sci. USA , vol.97 , pp. 8175-8179
    • Jarvis, P.1    Dormann, P.2    Peto, C.A.3    Lutes, J.4    Benning, C.5    Chory, J.6
  • 70
    • 0035852245 scopus 로고    scopus 로고
    • Toc Tic and chloroplast protein import
    • Jarvis P, Soll J. 2001. Toc Tic and chloroplast protein import. Biochim. Biophys. Acta 1541:64-79
    • (2001) Biochim. Biophys. Acta , vol.1541 , pp. 64-79
    • Jarvis, P.1    Soll, J.2
  • 71
    • 84980314866 scopus 로고
    • Occurrence of chlorophyll c1 and c2 in algae
    • Jeffrey SW. 1976. Occurrence of chlorophyll c1 and c2 in algae. J. Phycol. 12:349-54
    • (1976) J. Phycol , vol.12 , pp. 349-354
    • Jeffrey, S.W.1
  • 72
    • 79959837242 scopus 로고    scopus 로고
    • Acquired phototrophy in ciliates: A review of cellular interactions and structural adaptations
    • Johnson MD. 2011. Acquired phototrophy in ciliates: a review of cellular interactions and structural adaptations. J. Eukaryot. Microbiol. 58:185-95
    • (2011) J. Eukaryot. Microbiol , vol.58 , pp. 185-195
    • Johnson, M.D.1
  • 73
    • 0034903594 scopus 로고    scopus 로고
    • Foraminifera and Cercozoa are related in actin phylogeny: Two orphans find a home? Mol
    • Keeling PJ. 2001. Foraminifera and Cercozoa are related in actin phylogeny: two orphans find a home? Mol. Biol. Evol. 18:1551-57
    • (2001) Biol. Evol , vol.18 , pp. 1551-1557
    • Keeling, P.J.1
  • 74
    • 77349112000 scopus 로고    scopus 로고
    • The endosymbiotic origin, diversification and fate of plastids
    • Keeling PJ. 2010. The endosymbiotic origin, diversification and fate of plastids. Philos. Trans. R. Soc. Lond. B 365:729-48
    • (2010) Philos. Trans. R. Soc. Lond. B , vol.365 , pp. 729-748
    • Keeling, P.J.1
  • 75
    • 0015983479 scopus 로고
    • Elektronenmikroskopische Untersuchungen an Paulinella chromatophora Lauterborn, einer Thekamobe mit blau-grunen Endosymbionten (Cyanellen)
    • Kies L. 1974. Elektronenmikroskopische Untersuchungen an Paulinella chromatophora Lauterborn, einer Thekamobe mit blau-grunen Endosymbionten (Cyanellen). Protoplasma 80:69-89
    • (1974) Protoplasma , vol.80 , pp. 69-89
    • Kies, L.1
  • 76
    • 32044474145 scopus 로고
    • Function of cyanelles in the thecamoeba Paulinella chromatophora
    • Kies L, Kremer BP. 1979. Function of cyanelles in the thecamoeba Paulinella chromatophora. Naturewissenschaften 66:578-79
    • (1979) Naturewissenschaften , vol.66 , pp. 578-579
    • Kies, L.1    Kremer, B.P.2
  • 77
    • 50349085790 scopus 로고    scopus 로고
    • EEF2 analysis challenges the monophyly of Archaeplastida and Chromalveolata
    • Kim E, Graham LE. 2008. EEF2 analysis challenges the monophyly of Archaeplastida and Chromalveolata. PLoS ONE 3:e2621
    • (2008) PLoS ONE , vol.3
    • Kim, E.1    Graham, L.E.2
  • 78
    • 0040982083 scopus 로고    scopus 로고
    • A plastid of probable green algal origin in apicomplexan parasites
    • Kohler S, Delwiche CF, Denny PW, Tilney LG, Webster P, et al. 1997. A plastid of probable green algal origin in apicomplexan parasites. Science 275:1485-89
    • (1997) Science , vol.275 , pp. 1485-1489
    • Kohler, S.1    Delwiche, C.F.2    Denny, P.W.3    Tilney, L.G.4    Webster, P.5
  • 79
    • 0036443528 scopus 로고    scopus 로고
    • Protein transport into secondary plastids and the evolution of primary and secondary plastids
    • Kroth PG. 2002. Protein transport into secondary plastids and the evolution of primary and secondary plastids. Int. Rev. Cytol. 221:191-255
    • (2002) Int. Rev. Cytol , vol.221 , pp. 191-255
    • Kroth, P.G.1
  • 80
    • 0021014901 scopus 로고
    • Phylogeny of protozoa deduced from 5S rRNA sequences
    • Kumazaki T, Hori H, Osawa S. 1983. Phylogeny of protozoa deduced from 5S rRNA sequences. J. Mol. Evol. 19:411-19
    • (1983) J. Mol. Evol , vol.19 , pp. 411-419
    • Kumazaki, T.1    Hori, H.2    Osawa, S.3
  • 81
    • 43049085945 scopus 로고    scopus 로고
    • The eukaryotic tree of life: Endosymbiosis takes its TOL
    • Lane CE, Archibald JM. 2008. The eukaryotic tree of life: endosymbiosis takes its TOL. Trends Ecol. Evol. 23:268-75
    • (2008) Trends Ecol. Evol , vol.23 , pp. 268-275
    • Lane, C.E.1    Archibald, J.M.2
  • 82
    • 0032553297 scopus 로고    scopus 로고
    • Protein transport into "complex" diatom plastids utilizes two different targeting signals
    • Lang M, AptKE, Kroth PG. 1998. Protein transport into "complex" diatom plastids utilizes two different targeting signals. J. Biol. Chem. 273:30973-78
    • (1998) J. Biol. Chem , vol.273 , pp. 30973-30978
    • Lang, M.1    Apt, K.E.2    Kroth, P.G.3
  • 83
    • 0032211044 scopus 로고    scopus 로고
    • Plastids are widespread and ancient in parasites of the phylum Apicomplexa
    • Lang-Unnasch N, Reith ME, Munholland J, Barta Jr. 1998. Plastids are widespread and ancient in parasites of the phylum Apicomplexa. Int. J. Parasitol. 28:1743-54
    • (1998) Int. J. Parasitol , vol.28 , pp. 1743-1754
    • Lang-Unnasch, N.1    Reith, M.E.2    Munholland, J.3    Barta, J.R.4
  • 85
    • 0007765394 scopus 로고
    • Protozoenstudien II. Paulinella chromatophora nov. gen., nov. spec., ein beschalter Rhizopode des Sußwassers mit blaugrunen chromatophorenartigen Einschlussen
    • Lauterborn R. 1895. Protozoenstudien II. Paulinella chromatophora nov. gen., nov. spec., ein beschalter Rhizopode des Sußwassers mit blaugr ?unen chromatophorenartigen Einschlussen. Z. Wiss. Zool. 59:537-44
    • (1895) Z. Wiss. Zool , vol.59 , pp. 537-544
    • Lauterborn, R.1
  • 87
    • 0348004227 scopus 로고    scopus 로고
    • Phylum euglenozoa
    • ed. JJ Lee, GF Leedale, P Bradbury, Lawrence KS: Soc Protozool 2nd ed
    • Leedale GF, Vickerman K. 2000. Phylum Euglenozoa. In An Illustrated Guide to the Protozoa, ed. JJ Lee, GF Leedale, P Bradbury, pp. 1135-85. Lawrence, KS: Soc. Protozool. 2nd ed
    • (2000) An Illustrated Guide to the Protozoa , pp. 1135-1185
    • Leedale, G.F.1    Vickerman, K.2
  • 88
    • 67649198684 scopus 로고    scopus 로고
    • Translocons on the inner and outer envelopes of chloroplasts share similar evolutionary origin in Arabidopsis thaliana
    • Lv HX, Guo GQ, Yang ZN. 2009. Translocons on the inner and outer envelopes of chloroplasts share similar evolutionary origin in Arabidopsis thaliana. J. Evol. Biol. 22:1418-28
    • (2009) J. Evol. Biol , vol.22 , pp. 1418-1428
    • Lv, H.X.1    Guo, G.Q.2    Yang, Z.N.3
  • 89
    • 84864354641 scopus 로고    scopus 로고
    • Algivore or phototroph? Plakobranchus ocellatus (Gastropoda) continuously acquires kleptoplasts and nutrition from multiple algal species in nature
    • Maeda T, Hirose E, Chikaraishi Y, Kawato M, Takishita K, et al. 2012. Algivore or phototroph? Plakobranchus ocellatus (Gastropoda) continuously acquires kleptoplasts and nutrition from multiple algal species in nature. PLoS ONE 7:e42024
    • (2012) PLoS ONE , vol.7
    • Maeda, T.1    Hirose, E.2    Chikaraishi, Y.3    Kawato, M.4    Takishita, K.5
  • 90
    • 27944503381 scopus 로고    scopus 로고
    • A plastid in the making: Evidence for a second primary endosymbiosis
    • Marin B, Nowack EC, Melkonian M. 2005. A plastid in the making: evidence for a second primary endosymbiosis. Protist 156:425-32
    • (2005) Protist , vol.156 , pp. 425-432
    • Marin, B.1    Nowack, E.C.2    Melkonian, M.3
  • 91
    • 77349099958 scopus 로고    scopus 로고
    • Evolutionary origins of metabolic compartmentalization in eukaryotes
    • Martin W. 2010. Evolutionary origins of metabolic compartmentalization in eukaryotes. Philos. Trans. R. Soc. Lond. B 365:847-55
    • (2010) Philos. Trans. R. Soc. Lond. B , vol.365 , pp. 847-855
    • Martin, W.1
  • 92
    • 0037417874 scopus 로고    scopus 로고
    • Secondary loss of chloroplasts in trypanosomes
    • Martin W, Borst P. 2003. Secondary loss of chloroplasts in trypanosomes. Proc. Natl. Acad. Sci. USA 100:765-67
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 765-767
    • Martin, W.1    Borst, P.2
  • 93
    • 0037126071 scopus 로고    scopus 로고
    • Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
    • Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, et al. 2002. Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc. Natl. Acad. Sci. USA 99:12246-51
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 12246-12251
    • Martin, W.1    Rujan, T.2    Richly, E.3    Hansen, A.4    Cornelsen, S.5
  • 94
    • 79952453090 scopus 로고    scopus 로고
    • Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin
    • Matsumoto T, Shinozaki F, Chikuni T, Yabuki A, Takishita K, et al. 2011. Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin. Protist 162:268-76
    • (2011) Protist , vol.162 , pp. 268-276
    • Matsumoto, T.1    Shinozaki, F.2    Chikuni, T.3    Yabuki, A.4    Takishita, K.5
  • 95
    • 44649178727 scopus 로고    scopus 로고
    • A cryptic algal group unveiled: A plastid biosynthesis pathway in the oyster parasite Perkinsus marinus
    • MatsuzakiM, Kuroiwa H, Kuroiwa T, Kita K, Nozaki H. 2008. A cryptic algal group unveiled: a plastid biosynthesis pathway in the oyster parasite Perkinsus marinus. Mol. Biol. Evol. 25:1167-79
    • (2008) Mol. Biol. Evol , vol.25 , pp. 1167-1179
    • Matsuzaki, M.1    Kuroiwa, H.2    Kuroiwa, T.3    Kita, K.4    Nozaki, H.5
  • 96
    • 0033167259 scopus 로고    scopus 로고
    • Plastids and protein targeting
    • McFadden GI. 1999. Plastids and protein targeting. J. Eukaryot. Microbiol. 46:339-46
    • (1999) J. Eukaryot. Microbiol , vol.46 , pp. 339-346
    • McFadden, G.I.1
  • 97
    • 0035689472 scopus 로고    scopus 로고
    • Primary and secondary endosymbiosis and the origin of plastids
    • McFadden GI. 2001. Primary and secondary endosymbiosis and the origin of plastids. J. Phycol. 37:951-59
    • (2001) J. Phycol , vol.37 , pp. 951-959
    • McFadden, G.I.1
  • 99
    • 0031282142 scopus 로고    scopus 로고
    • Plastids in parasites of humans
    • McFadden GI, Waller RF. 1997. Plastids in parasites of humans. Bioessays 19:1033-40
    • (1997) Bioessays , vol.19 , pp. 1033-1040
    • McFadden, G.I.1    Waller, R.F.2
  • 100
    • 22744458613 scopus 로고    scopus 로고
    • Robert Lauterborn (1869-1952) and his Paulinella chromatophora
    • Melkonian M, Mollenhauer D. 2005. Robert Lauterborn (1869-1952) and his Paulinella chromatophora. Protist 156:253-62
    • (2005) Protist , vol.156 , pp. 253-262
    • Melkonian, M.1    Mollenhauer, D.2
  • 101
    • 0001325410 scopus 로고
    • Etude ultrastructurale d'un Flagelle du genre Spumella Cienk. (=Heterochromonas Pascher, = Monas O. F. Muller), Chrysomonadine leucoplastidiee
    • Mignot JP. 1977. Etude ultrastructurale d'un Flagelle du genre Spumella Cienk. (=Heterochromonas Pascher, = Monas O. F. Muller), Chrysomonadine leucoplastidiee. Protistologica 13:219-31
    • (1977) Protistologica , vol.13 , pp. 219-231
    • Mignot, J.P.1
  • 102
    • 77953676978 scopus 로고    scopus 로고
    • Aphylogeneticmosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum
    • MingeMA, Shalchian-Tabrizi K, TorresenOK, TakishitaK,Probert I, et al. 2010.Aphylogeneticmosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum. BMC Evol. Biol. 10:191
    • (2010) BMC Evol. Biol , vol.10 , pp. 191
    • Minge, M.A.1    Shalchian-Tabrizi, K.2    Torresen, O.K.3    Takishita, K.4    Probert, I.5
  • 103
  • 105
    • 48249125417 scopus 로고    scopus 로고
    • Chlamydiae has contributed at least 55 genes to Plantae with predominantly plastid functions
    • Moustafa A, Reyes-Prieto A, Bhattacharya D. 2008. Chlamydiae has contributed at least 55 genes to Plantae with predominantly plastid functions. PLoS ONE 3:e2205
    • (2008) PLoS ONE , vol.3
    • Moustafa, A.1    Reyes-Prieto, A.2    Bhattacharya, D.3
  • 106
    • 64049119910 scopus 로고    scopus 로고
    • Another acquisition of a primary photosynthetic organelle is underway in Paulinella chromatophora
    • Nakayama T, Ishida K. 2009. Another acquisition of a primary photosynthetic organelle is underway in Paulinella chromatophora. Curr. Biol. 19:R284-85
    • (2009) Curr. Biol , vol.19
    • Nakayama, T.1    Ishida, K.2
  • 107
    • 0041669431 scopus 로고    scopus 로고
    • Plastid ultrastructure defines the protein import pathway in dinoflagellates
    • Nassoury N, Cappadocia M, Morse D. 2003. Plastid ultrastructure defines the protein import pathway in dinoflagellates. J. Cell Sci. 116:2867-74
    • (2003) J. Cell Sci , vol.116 , pp. 2867-2874
    • Nassoury, N.1    Cappadocia, M.2    Morse, D.3
  • 108
    • 2542512417 scopus 로고    scopus 로고
    • The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes
    • Nikolaev SI, Berney C, Fahrni JF, Bolivar I, Polet S, et al. 2004. The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes. Proc. Natl. Acad. Sci. USA 101:8066-71
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 8066-8071
    • Nikolaev, S.I.1    Berney, C.2    Fahrni, J.F.3    Bolivar, I.4    Polet, S.5
  • 109
    • 35948973954 scopus 로고    scopus 로고
    • Horizontal gene transfer in chromalveolates
    • Nosenko T, Bhattacharya D. 2007. Horizontal gene transfer in chromalveolates. BMC Evol. Biol. 7:173
    • (2007) BMC Evol. Biol , vol.7 , pp. 173
    • Nosenko, T.1    Bhattacharya, D.2
  • 111
    • 33846502698 scopus 로고    scopus 로고
    • Picobiliphytes: Amarine picoplanktonic algal group with unknown affinities to other eukaryotes
    • Not F, Valentin K, Romari K, Lovejoy C, Massana R, et al. 2007. Picobiliphytes: amarine picoplanktonic algal group with unknown affinities to other eukaryotes. Science 315:253-55
    • (2007) Science , vol.315 , pp. 253-255
    • Not, F.1    Valentin, K.2    Romari, K.3    Lovejoy, C.4    Massana, R.5
  • 112
    • 84859455551 scopus 로고    scopus 로고
    • Trafficking of protein into the recently established photosynthetic organelles of Paulinella chromatophora
    • Nowack EC, Grossman AR. 2012. Trafficking of protein into the recently established photosynthetic organelles of Paulinella chromatophora. Proc. Natl. Acad. Sci. USA 109:5340-45
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 5340-5345
    • Nowack, E.C.1    Grossman, A.R.2
  • 113
    • 42049092254 scopus 로고    scopus 로고
    • Chromatophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes
    • Nowack EC, Melkonian M, Glockner G. 2008. Chromatophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes. Curr. Biol. 18:410-18
    • (2008) Curr. Biol , vol.18 , pp. 410-418
    • Nowack, E.C.1    Melkonian, M.2    Glockner, G.3
  • 114
    • 78650465234 scopus 로고    scopus 로고
    • Endosymbiotic gene transfer and transcriptional regulation of transferred genes in Paulinella chromatophora
    • Nowack EC, Vogel H, Groth M, Grossman AR, Melkonian M, Glockner G. 2011. Endosymbiotic gene transfer and transcriptional regulation of transferred genes in Paulinella chromatophora. Mol. Biol. Evol. 28:407-22
    • (2011) Mol. Biol. Evol , vol.28 , pp. 407-422
    • Nowack, E.C.1    Vogel, H.2    Groth, M.3    Grossman, A.R.4    Melkonian, M.5    Glockner, G.6
  • 115
    • 84856233652 scopus 로고    scopus 로고
    • Morphology, ultrastructure and life cycle of Vitrella brassicaformis n. sp., n. gen., a novel chromerid from the Great Barrier Reef
    • ObornikM,Modry D, Lukes M, Cernotikova-Stribrna E, Cihlar J, et al. 2012. Morphology, ultrastructure and life cycle of Vitrella brassicaformis n. sp., n. gen., a novel chromerid from the Great Barrier Reef. Protist 163:306-23
    • (2012) Protist , vol.163 , pp. 306-323
    • Obornik, M.1    Modry, D.2    Lukes, M.3    Cernotikova-Stribrna, E.4    Cihlar, J.5
  • 116
    • 70349382868 scopus 로고    scopus 로고
    • Molecular phylogeny and description of the novel katablepharid Roombia truncata genet sp. nov., and establishment of the Hacrobia taxon nov
    • Okamoto N, Chantangsi C, Horak A, Leander BS, Keeling PJ. 2009. Molecular phylogeny and description of the novel katablepharid Roombia truncata gen. et sp. nov., and establishment of the Hacrobia taxon nov. PLoS ONE 4:e7080
    • (2009) PLoS ONE , vol.4
    • Okamoto, N.1    Chantangsi, C.2    Horak, A.3    Leander, B.S.4    Keeling, P.J.5
  • 117
    • 84862490662 scopus 로고    scopus 로고
    • Description of two species of early branching dinoflagellates, Psammosa pacifica n. g., n. sp. and P. atlantica n. sp
    • Okamoto N, Horak A, Keeling PJ. 2012. Description of two species of early branching dinoflagellates, Psammosa pacifica n. g., n. sp. and P. atlantica n. sp. PLoS ONE 7:e34900
    • (2012) PLoS ONE , vol.7
    • Okamoto, N.1    Horak, A.2    Keeling, P.J.3
  • 118
    • 33749428694 scopus 로고    scopus 로고
    • Hatena arenicola gen. et sp. nov., a katablepharid undergoing probable plastid acquisition
    • Okamoto N, Inouye I. 2006. Hatena arenicola gen. et sp. nov., a katablepharid undergoing probable plastid acquisition. Protist 157:401-19
    • (2006) Protist , vol.157 , pp. 401-419
    • Okamoto, N.1    Inouye, I.2
  • 119
    • 34247899047 scopus 로고    scopus 로고
    • Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages
    • Patron NJ, Inagaki Y, Keeling PJ. 2007. Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages. Curr. Biol. 17:887-91
    • (2007) Curr. Biol , vol.17 , pp. 887-891
    • Patron, N.J.1    Inagaki, Y.2    Keeling, P.J.3
  • 120
    • 6344265521 scopus 로고    scopus 로고
    • Gene replacement of fructose-1,6-bisphosphate aldolase (FBA) supports a single photosynthetic ancestor of chromalveolates
    • Patron NJ,Rogers MB,Keeling PJ. 2004. Gene replacement of fructose-1,6-bisphosphate aldolase (FBA) supports a single photosynthetic ancestor of chromalveolates. Eukaryot. Cell 3:1169-75
    • (2004) Eukaryot. Cell , vol.3 , pp. 1169-1175
    • Patron, N.J.1    Rogers, M.B.2    Keeling, P.J.3
  • 121
    • 33645100385 scopus 로고    scopus 로고
    • A tertiary plastid uses genes from two endosymbionts
    • Patron NJ,Waller RF, Keeling PJ. 2006. A tertiary plastid uses genes from two endosymbionts. J. Mol. Biol. 357:1373-82
    • (2006) J. Mol. Biol , vol.357 , pp. 1373-1382
    • Patron, N.J.1    Waller, R.F.2    Keeling, P.J.3
  • 122
    • 80052868294 scopus 로고    scopus 로고
    • The core components of organelle biogenesis and membrane transport in the hydrogenosomes of Trichomonas vaginalis
    • Rada P, Dolezal P, Jedelsky PL, Bursac D, Perry AJ, et al. 2011. The core components of organelle biogenesis and membrane transport in the hydrogenosomes of Trichomonas vaginalis. PLoSONE6:e24428
    • (2011) PLoSONE , vol.6
    • Rada, P.1    Dolezal, P.2    Jedelsky, P.L.3    Bursac, D.4    Perry, A.J.5
  • 123
    • 2342520626 scopus 로고    scopus 로고
    • Tropical infectious diseases: Metabolic maps and functions of the Plasmodium falciparum apicoplast
    • Ralph SA, Van Dooren GG, Waller RF, Crawford MJ, Fraunholz MJ, et al. 2004. Tropical infectious diseases: metabolic maps and functions of the Plasmodium falciparum apicoplast. Nat. Rev. Microbiol. 2:203-16
    • (2004) Nat. Rev. Microbiol , vol.2 , pp. 203-216
    • Ralph, S.A.1    Van Dooren, G.G.2    Waller, R.F.3    Crawford, M.J.4    Fraunholz, M.J.5
  • 124
    • 45849124190 scopus 로고    scopus 로고
    • Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic
    • Reyes-Prieto A, Moustafa A, Bhattacharya D. 2008. Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic. Curr. Biol. 18:956-62
    • (2008) Curr. Biol , vol.18 , pp. 956-962
    • Reyes-Prieto, A.1    Moustafa, A.2    Bhattacharya, D.3
  • 125
    • 33748895571 scopus 로고    scopus 로고
    • An exceptional horizontal gene transfer in plastids: Gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters
    • Rice DW, Palmer JD. 2006. An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters. BMC Biol. 4:31
    • (2006) BMC Biol , vol.4 , pp. 31
    • Rice, D.W.1    Palmer, J.D.2
  • 126
    • 33845891330 scopus 로고    scopus 로고
    • The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: Evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts
    • Rogers MB, Gilson PR, Su V, McFadden GI, Keeling PJ. 2007. The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts. Mol. Biol. Evol. 24:54-62
    • (2007) Mol. Biol. Evol , vol.24 , pp. 54-62
    • Rogers, M.B.1    Gilson, P.R.2    Su, V.3    McFadden, G.I.4    Keeling, P.J.5
  • 127
    • 6344249854 scopus 로고    scopus 로고
    • Lateral gene transfer and re-compartmentalisation ofCalvin cycle enzymes in plants and algae
    • Rogers MB,KeelingPJ. 2003. Lateral gene transfer and re- compartmentalisation ofCalvin cycle enzymes in plants and algae. J. Mol. Evol. 58:367-75
    • (2003) J. Mol. Evol , vol.58 , pp. 367-375
    • Rogers, M.B.1    Keeling, P.J.2
  • 128
    • 0034874061 scopus 로고    scopus 로고
    • Dinoflagellate nuclear SSU rRNA phylogeny suggests multiple plastid losses and replacements
    • Saldarriaga JF, Taylor FJR, Keeling PJ, Cavalier-Smith T. 2001. Dinoflagellate nuclear SSU rRNA phylogeny suggests multiple plastid losses and replacements. J. Mol. Evol. 53:204-13
    • (2001) J. Mol. Evol , vol.53 , pp. 204-213
    • Saldarriaga, J.F.1    Taylor, F.J.R.2    Keeling, P.J.3    Cavalier-Smith, T.4
  • 130
    • 85024800022 scopus 로고
    • Cryptophycean-like double membrane-bound chloroplast in the dinoflagellate, Dinophysis Ehrenb.: Evolutionary, phylogenetic and toxicological implications
    • Schnepf E, Elbrachter M. 1988. Cryptophycean-like double membrane-bound chloroplast in the dinoflagellate, Dinophysis Ehrenb.: evolutionary, phylogenetic and toxicological implications. Bot. Acta 101:196-203
    • (1988) Bot. Acta , vol.101 , pp. 196-203
    • Schnepf, E.1    Elbrachter, M.2
  • 131
    • 0035998875 scopus 로고    scopus 로고
    • Vestigial chloroplasts in heterotrophic stramenopiles Pteridomonas danica and Ciliophrys infusionum (Dictyochophyceae)
    • Sekiguchi H, Moriya M, Nakayama T, Inouye I. 2002. Vestigial chloroplasts in heterotrophic stramenopiles Pteridomonas danica and Ciliophrys infusionum (Dictyochophyceae). Protist 153:157-67
    • (2002) Protist , vol.153 , pp. 157-167
    • Sekiguchi, H.1    Moriya, M.2    Nakayama, T.3    Inouye, I.4
  • 132
    • 0037108318 scopus 로고    scopus 로고
    • Eukaryotic evolution: Getting to the root of the problem
    • Simpson AG, Roger AJ. 2002. Eukaryotic evolution: getting to the root of the problem. Curr. Biol. 12:R691-93
    • (2002) Curr. Biol , vol.12
    • Simpson, A.G.1    Roger, A.J.2
  • 133
    • 45849090251 scopus 로고    scopus 로고
    • Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina
    • Slamovits CH, Keeling PJ. 2008. Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina. Mol. Biol. Evol. 25:1297-306
    • (2008) Mol. Biol. Evol , vol.25 , pp. 1297-1306
    • Slamovits, C.H.1    Keeling, P.J.2
  • 136
    • 77954746076 scopus 로고    scopus 로고
    • The chloroplast protein import machinery: A review
    • Strittmatter P, Soll J, Bolter B. 2010. The chloroplast protein import machinery: a review. Methods Mol. Biol. 619:307-21
    • (2010) Methods Mol. Biol , vol.619 , pp. 307-321
    • Strittmatter, P.1    Soll, J.2    Bolter, B.3
  • 137
    • 0032955849 scopus 로고    scopus 로고
    • Topology of Euglena chloroplast protein precursors within endoplasmic reticulum to Golgi to chloroplast transport vesicles
    • Sulli C, Fang Z, MuchhalU, Schwartzbach SD. 1999. Topology of Euglena chloroplast protein precursors within endoplasmic reticulum to Golgi to chloroplast transport vesicles. J. Biol. Chem. 274:457-63
    • (1999) J. Biol. Chem , vol.274 , pp. 457-463
    • Sulli, C.1    Fang, Z.2    Muchhal, U.3    Schwartzbach, S.D.4
  • 138
    • 0036744517 scopus 로고    scopus 로고
    • Molecular evidence for plastid robbery (Kleptoplastidy) in Dinophysis, a dinoflagellate causing diarrhetic shellfish poisoning
    • Takishita K, Koike K, Maruyama T, Ogata T. 2002. Molecular evidence for plastid robbery (Kleptoplastidy) in Dinophysis, a dinoflagellate causing diarrhetic shellfish poisoning. Protist 153:293-302
    • (2002) Protist , vol.153 , pp. 293-302
    • Takishita, K.1    Koike, K.2    Maruyama, T.3    Ogata, T.4
  • 139
    • 62749167907 scopus 로고    scopus 로고
    • A hypothesis for the evolution of nuclearencoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase genes in "chromalveolate" members
    • Takishita K, Yamaguchi H, Maruyama T, Inagaki Y. 2009. A hypothesis for the evolution of nuclearencoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase genes in "chromalveolate" members. PLoS ONE 4:e4737
    • (2009) PLoS ONE , vol.4
    • Takishita, K.1    Yamaguchi, H.2    Maruyama, T.3    Inagaki, Y.4
  • 141
    • 0033624957 scopus 로고    scopus 로고
    • Phylogenetic analyses indicate that the 19-hexanoyloxy-fucoxanthin- containing dinoflagellates have tertiary plastids of haptophyte origin
    • Tengs T, Dahlberg OJ, Shalchian-Tabrizi K, Klaveness D, Rudi K, et al. 2000. Phylogenetic analyses indicate that the 19-hexanoyloxy-fucoxanthin- containing dinoflagellates have tertiary plastids of haptophyte origin. Mol. Biol. Evol. 17:718-29
    • (2000) Mol. Biol. Evol , vol.17 , pp. 718-729
    • Tengs, T.1    Dahlberg, O.J.2    Shalchian-Tabrizi, K.3    Klaveness, D.4    Rudi, K.5
  • 142
    • 33748329373 scopus 로고    scopus 로고
    • Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis
    • Tyler BM,Tripathy S, Zhang X, Dehal P, Jiang RH, et al. 2006. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science 313:1261-66
    • (2006) Science , vol.313 , pp. 1261-1266
    • Tyler, B.M.1    Tripathy, S.2    Zhang, X.3    Dehal, P.4    Jiang, R.H.5
  • 143
    • 40849124801 scopus 로고    scopus 로고
    • Host origin of plastid solute transporters in the first photosynthetic eukaryotes
    • Tyra HM, Linka M,Weber AP, Bhattacharya D. 2007. Host origin of plastid solute transporters in the first photosynthetic eukaryotes. Genome Biol. 8:R212
    • (2007) Genome Biol , vol.8
    • Tyra, H.M.1    Linka, M.2    Weber, A.P.3    Bhattacharya, D.4
  • 144
    • 0029989451 scopus 로고    scopus 로고
    • The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA
    • Van de Peer Y, Van der Auwera G, DeWachter R. 1996. The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA. J. Mol. Evol. 42:201-10
    • (1996) J. Mol. Evol , vol.42 , pp. 201-210
    • Van De Peer, Y.1    Van Der Auwera, G.2    Dewachter, R.3
  • 145
    • 33745323234 scopus 로고    scopus 로고
    • Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra
    • Waller RF, Patron NJ, Keeling PJ. 2006. Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra. Int. J. Syst. Evol. Microbiol. 56:1439-347
    • (2006) Int. J. Syst. Evol. Microbiol , vol.56 , pp. 1439-1357
    • Waller, R.F.1    Patron, N.J.2    Keeling, P.J.3
  • 146
    • 0034678922 scopus 로고    scopus 로고
    • Protein trafficking to the plastid of Plasmodium falciparum is via the secretory pathway
    • Waller RF, Reed MB, Cowman AF, McFadden GI. 2000. Protein trafficking to the plastid of Plasmodium falciparum is via the secretory pathway. EMBO J. 19:1794-802
    • (2000) EMBO J , vol.19 , pp. 1794-1802
    • Waller, R.F.1    Reed, M.B.2    Cowman, A.F.3    McFadden, G.I.4
  • 147
    • 84986841030 scopus 로고
    • Lepidodinium viride gen. et sp. nov. (Gymnodiniales, Dinophyta), a green dinoflagellate with a chlorophyll a-and b-containing endosymbiont
    • Watanabe MM, Suda S, Inouye I, Sawaguchi I, Chihara M. 1990. Lepidodinium viride gen. et sp. nov. (Gymnodiniales, Dinophyta), a green dinoflagellate with a chlorophyll a-and b-containing endosymbiont. J. Phycol. 26:741-51
    • (1990) J. Phycol , vol.26 , pp. 741-751
    • Watanabe, M.M.1    Suda, S.2    Inouye, I.3    Sawaguchi, I.4    Chihara, M.5
  • 148
    • 0242379171 scopus 로고    scopus 로고
    • Cryptic organelles in parasitic protists and fungi
    • Williams BAP,Keeling PJ. 2003. Cryptic organelles in parasitic protists and fungi. Adv. Parasitol. 54:9-67
    • (2003) Adv. Parasitol , vol.54 , pp. 9-67
    • Bap, W.1    Keeling, P.J.2
  • 149
    • 0028220332 scopus 로고
    • The evolutionary origin of the 35 kb circular DNA of Plasmodium falciparum: New evidence supports a possible rhodophyte ancestry
    • Williamson DH, Gardner MJ, Preiser P, Moore DJ, Rangachari K,Wilson RJ. 1994. The evolutionary origin of the 35 kb circular DNA of Plasmodium falciparum: new evidence supports a possible rhodophyte ancestry. Mol. Gen. Genet. 243:249-52
    • (1994) Mol. Gen. Genet , vol.243 , pp. 249-252
    • Williamson, D.H.1    Gardner, M.J.2    Preiser, P.3    Moore, D.J.4    Rangachari, K.5    Wilson, R.J.6
  • 150
    • 0036307786 scopus 로고    scopus 로고
    • Progress with parasite plastids
    • Wilson RJ. 2002. Progress with parasite plastids. J. Mol. Biol. 319:257-74
    • (2002) J. Mol. Biol , vol.319 , pp. 257-274
    • Wilson, R.J.1
  • 151
    • 0030590259 scopus 로고    scopus 로고
    • Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum
    • Wilson RJ, Denny PW, Preiser DJ, Rangachari K, Roberts K, et al. 1996. Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum. J. Mol. Biol. 261:155-72
    • (1996) J. Mol. Biol , vol.261 , pp. 155-172
    • Wilson, R.J.1    Denny, P.W.2    Preiser, D.J.3    Rangachari, K.4    Roberts, K.5
  • 152
    • 84857232993 scopus 로고    scopus 로고
    • Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and Apicomplexa-related Chromera velia
    • Woehle C, Dagan T, Martin WF, Gould SB. 2011. Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and Apicomplexa-related Chromera velia. Genome Biol. Evol. 3:1220-30
    • (2011) Genome Biol. Evol , vol.3 , pp. 1220-1230
    • Woehle, C.1    Dagan, T.2    Martin, W.F.3    Gould, S.B.4
  • 153
    • 77955656595 scopus 로고    scopus 로고
    • Palpitomonas bilix gen. et sp. nov.: A novel deep-branching heterotroph possibly related to Archaeplastida or Hacrobia
    • Yabuki A, Inagaki Y, Ishida K. 2010. Palpitomonas bilix gen. et sp. nov.: a novel deep-branching heterotroph possibly related to Archaeplastida or Hacrobia. Protist 161:523-38
    • (2010) Protist , vol.161 , pp. 523-538
    • Yabuki, A.1    Inagaki, Y.2    Ishida, K.3
  • 154
    • 0037015024 scopus 로고    scopus 로고
    • Asingle origin of the peridinin-and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis
    • Yoon HS,Hackett JD, Bhattacharya D. 2002.Asingle origin of the peridinin-and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis. Proc. Natl. Acad. Sci. USA 99:11724-29
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11724-11729
    • Yoon, H.S.1    Hackett, J.D.2    Bhattacharya, D.3
  • 155
    • 79955787125 scopus 로고    scopus 로고
    • Single-cell genomics reveals organismal interactions in uncultivated marine protists
    • Yoon HS, Price DC, Stepanauskas R, Rajah VD, Sieracki ME, et al. 2011. Single-cell genomics reveals organismal interactions in uncultivated marine protists. Science 332:714-17
    • (2011) Science , vol.332 , pp. 714-717
    • Yoon, H.S.1    Price, D.C.2    Stepanauskas, R.3    Rajah, V.D.4    Sieracki, M.E.5
  • 156
    • 0033536215 scopus 로고    scopus 로고
    • Single gene circles in dinoflagellate chloroplast genomes
    • Zhang Z, Green BR, Cavalier-Smith T. 1999. Single gene circles in dinoflagellate chloroplast genomes. Nature 400:155-59
    • (1999) Nature , vol.400 , pp. 155-159
    • Zhang, Z.1    Green, B.R.2    Cavalier-Smith, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.