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Volumn 288, Issue 40, 2013, Pages 28913-28924

The N-degradome of Escherichia coli: Limited proteolysis in vivo generates a large pool of proteins bearing N-degrons

Author keywords

[No Author keywords available]

Indexed keywords

ENDOPROTEOLYTIC CLEAVAGE; IN-VIVO; LIMITED PROTEOLYSIS; NATIVE PROTEINS; POSSIBLE MECHANISMS;

EID: 84885123033     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M113.492108     Document Type: Article
Times cited : (43)

References (37)
  • 1
    • 0030936847 scopus 로고    scopus 로고
    • Protein quality control: Triage by chaperones and proteases
    • Gottesman, S., Wickner, S., and Maurizi, M. R. (1997) Protein quality control: triage by chaperones and proteases. Genes Dev. 11, 815-823
    • (1997) Genes Dev. , vol.11 , pp. 815-823
    • Gottesman, S.1    Wickner, S.2    Maurizi, M.R.3
  • 2
    • 0037010120 scopus 로고    scopus 로고
    • AAA proteins and substrate recognition, it all depends on their partner in crime
    • Dougan, D. A., Mogk, A., Zeth, K., Turgay, K., and Bukau, B. (2002)AAA proteins and substrate recognition, it all depends on their partner in crime. FEBS Lett. 529, 6-10
    • (2002) FEBS Lett. , vol.529 , pp. 6-10
    • Dougan, D.A.1    Mogk, A.2    Zeth, K.3    Turgay, K.4    Bukau, B.5
  • 3
    • 0029126356 scopus 로고
    • Homology in structural organization between E. Coli ClpAP protease and the eukaryotic26 S proteasome
    • Kessel, M., Maurizi, M. R., Kim, B., Kocsis, E., Trus, B. L., Singh, S. K., and Steven, A. C. (1995) Homology in structural organization between E. coli ClpAP protease and the eukaryotic 26 S proteasome. J. Mol. Biol. 250, 587-594
    • (1995) J. Mol. Biol. , vol.250 , pp. 587-594
    • Kessel, M.1    Maurizi, M.R.2    Kim, B.3    Kocsis, E.4    Trus, B.L.5    Singh, S.K.6    Steven, A.C.7
  • 4
    • 0030691115 scopus 로고    scopus 로고
    • The structure of ClpP at 2. 3 A resolution suggests a model for ATP-dependent proteolysis
    • Wang, J., Hartling, J. A., and Flanagan, J. M. (1997) The structure of ClpP at 2.3 A resolution suggests a model for ATP-dependent proteolysis. Cell 91, 447-456
    • (1997) Cell , vol.91 , pp. 447-456
    • Wang, J.1    Hartling, J.A.2    Flanagan, J.M.3
  • 6
    • 0033517351 scopus 로고    scopus 로고
    • Global unfolding of a substrate protein by the Hsp100 chaperone ClpA
    • Weber-Ban, E. U., Reid, B. G., Miranker, A. D., and Horwich, A. L. (1999) Global unfolding of a substrate protein by the Hsp100 chaperone ClpA. Nature 401, 90-93
    • (1999) Nature , vol.401 , pp. 90-93
    • Weber-Ban, E.U.1    Reid, B.G.2    Miranker, A.D.3    Horwich, A.L.4
  • 8
  • 9
    • 55549088522 scopus 로고    scopus 로고
    • Pore loops of the AAA ClpX machine grip substrates to drive translocation and unfolding
    • Martin, A., Baker, T. A., and Sauer, R. T. (2008) Pore loops of the AAA ClpX machine grip substrates to drive translocation and unfolding. Nat. Struct. Mol. Biol. 15, 1147-1151
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 1147-1151
    • Martin, A.1    Baker, T.A.2    Sauer, R.T.3
  • 10
    • 79953888421 scopus 로고    scopus 로고
    • Single-molecule protein unfolding and translocation by an ATP-fueled proteolytic machine
    • Aubin-Tam, M. E., Olivares, A. O., Sauer, R. T., Baker, T. A., and Lang, M. J. (2011) Single-molecule protein unfolding and translocation by an ATP-fueled proteolytic machine. Cell 145, 257-267
    • (2011) Cell , vol.145 , pp. 257-267
    • Aubin-Tam, M.E.1    Olivares, A.O.2    Sauer, R.T.3    Baker, T.A.4    Lang, M.J.5
  • 12
    • 0037351068 scopus 로고    scopus 로고
    • Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals
    • Flynn, J. M., Neher, S. B., Kim, Y. I., Sauer, R. T., and Baker, T. A. (2003) Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals. Mol. Cell 11, 671-683
    • (2003) Mol. Cell , vol.11 , pp. 671-683
    • Flynn, J.M.1    Neher, S.B.2    Kim, Y.I.3    Sauer, R.T.4    Baker, T.A.5
  • 13
    • 0034730496 scopus 로고    scopus 로고
    • Aspecificityenhancing factor for the ClpXP degradation machine
    • Levchenko, I., Seidel, M., Sauer, R. T., and Baker, T. A. (2000)Aspecificityenhancing factor for the ClpXP degradation machine. Science 289, 2354-2356
    • (2000) Science , vol.289 , pp. 2354-2356
    • Levchenko, I.1    Seidel, M.2    Sauer, R.T.3    Baker, T.A.4
  • 14
    • 0029990928 scopus 로고    scopus 로고
    • The response regulator RssB controls stability of the(S) subunit of RNA polymerase in Escherichia coli
    • Muffler, A., Fischer, D., Altuvia, S., Storz, G., and Hengge-Aronis, R. (1996) The response regulator RssB controls stability of the(S) subunit of RNA polymerase in Escherichia coli. EMBO J. 15, 1333-1339
    • (1996) EMBO J. , vol.15 , pp. 1333-1339
    • Muffler, A.1    Fischer, D.2    Altuvia, S.3    Storz, G.4    Hengge-Aronis, R.5
  • 15
    • 0029983001 scopus 로고    scopus 로고
    • The response regulator SprE controls the stability of RpoS
    • Pratt, L. A., and Silhavy, T. J. (1996) The response regulator SprE controls the stability of RpoS. Proc. Natl. Acad. Sci. U.S.A. 93, 2488-2492
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 2488-2492
    • Pratt, L.A.1    Silhavy, T.J.2
  • 16
    • 0035281566 scopus 로고    scopus 로고
    • The RssB response regulator directly targets (S) for degradation by ClpXP
    • Zhou, Y., Gottesman, S., Hoskins, J. R., Maurizi, M. R., and Wickner, S. (2001) The RssB response regulator directly targets (S) for degradation by ClpXP. Genes Dev. 15, 627-637
    • (2001) Genes Dev. , vol.15 , pp. 627-637
    • Zhou, Y.1    Gottesman, S.2    Hoskins, J.R.3    Maurizi, M.R.4    Wickner, S.5
  • 18
    • 0037195961 scopus 로고    scopus 로고
    • Crystal structure of the heterodimeric complex of the adaptor, ClpS, with the N-domain of the AAA chaperone, ClpA
    • Guo, F., Esser, L., Singh, S. K., Maurizi, M. R., and Xia, D. (2002) Crystal structure of the heterodimeric complex of the adaptor, ClpS, with the N-domain of the AAA chaperone, ClpA. J. Biol. Chem. 277, 46753-46762
    • (2002) J. Biol. Chem. , vol.277 , pp. 46753-46762
    • Guo, F.1    Esser, L.2    Singh, S.K.3    Maurizi, M.R.4    Xia, D.5
  • 19
    • 0036896886 scopus 로고    scopus 로고
    • Structural analysis of the adaptor protein ClpS in complex with the N-terminal domain of ClpA
    • Zeth, K., Ravelli, R. B., Paal, K., Cusack, S., Bukau, B., and Dougan, D. A. (2002) Structural analysis of the adaptor protein ClpS in complex with the N-terminal domain of ClpA. Nat. Struct. Biol. 9, 906-911
    • (2002) Nat. Struct. Biol. , vol.9 , pp. 906-911
    • Zeth, K.1    Ravelli, R.B.2    Paal, K.3    Cusack, S.4    Bukau, B.5    Dougan, D.A.6
  • 20
    • 64149130398 scopus 로고    scopus 로고
    • ClpS is the recognition component for Escherichia coli substrates of the N-end rule degradation pathway
    • Schmidt, R., Zahn, R., Bukau, B., and Mogk, A. (2009) ClpS is the recognition component for Escherichia coli substrates of the N-end rule degradation pathway. Mol. Microbiol. 72, 506-517
    • (2009) Mol. Microbiol. , vol.72 , pp. 506-517
    • Schmidt, R.1    Zahn, R.2    Bukau, B.3    Mogk, A.4
  • 22
    • 79960683356 scopus 로고    scopus 로고
    • The N-end rule pathway and regulation by proteolysis
    • Varshavsky, A. (2011) The N-end rule pathway and regulation by proteolysis. Protein Sci. 20, 1298-1345
    • (2011) Protein Sci. , vol.20 , pp. 1298-1345
    • Varshavsky, A.1
  • 24
    • 0027255191 scopus 로고
    • The N-end rule in Escherichia coli: Cloning and analysis of the leucyl, phenylalanyl-tRNAprotein transferase gene aat
    • Shrader, T. E., Tobias, J. W., and Varshavsky, A. (1993) The N-end rule in Escherichia coli: cloning and analysis of the leucyl, phenylalanyl- tRNAprotein transferase gene aat. J. Bacteriol. 175, 4364-4374
    • (1993) J. Bacteriol. , vol.175 , pp. 4364-4374
    • Shrader, T.E.1    Tobias, J.W.2    Varshavsky, A.3
  • 25
    • 67349099562 scopus 로고    scopus 로고
    • Structural basis of N-end rule substrate recognition in Escherichia coli by the ClpAP adaptor protein ClpS
    • Schuenemann, V. J., Kralik, S. M., Albrecht, R., Spall, S. K., Truscott, K. N., Dougan, D. A., and Zeth, K. (2009) Structural basis of N-end rule substrate recognition in Escherichia coli by the ClpAP adaptor protein ClpS. EMBO Rep. 10, 508-514
    • (2009) EMBO Rep. , vol.10 , pp. 508-514
    • Schuenemann, V.J.1    Kralik, S.M.2    Albrecht, R.3    Spall, S.K.4    Truscott, K.N.5    Dougan, D.A.6    Zeth, K.7
  • 26
    • 77950578789 scopus 로고    scopus 로고
    • A single ClpS monomer is sufficient to direct the activity of the ClpA hexamer
    • De Donatis, G. M., Singh, S. K., Viswanathan, S., and Maurizi, M. R. (2010) A single ClpS monomer is sufficient to direct the activity of the ClpA hexamer. J. Biol. Chem. 285, 8771-8781
    • (2010) J. Biol. Chem. , vol.285 , pp. 8771-8781
    • De Donatis, G.M.1    Singh, S.K.2    Viswanathan, S.3    Maurizi, M.R.4
  • 27
    • 79960451307 scopus 로고    scopus 로고
    • The ClpS adaptor mediates staged delivery of N-end rule substrates to the AAA ClpAP protease
    • Román-Hernández, G., Hou, J. Y., Grant, R. A., Sauer, R. T., and Baker, T. A. (2011) The ClpS adaptor mediates staged delivery of N-end rule substrates to the AAA ClpAP protease. Mol. Cell 43, 217-228
    • (2011) Mol. Cell , vol.43 , pp. 217-228
    • Román-Hernández, G.1    Hou, J.Y.2    Grant, R.A.3    Sauer, R.T.4    Baker, T.A.5
  • 28
    • 67649552963 scopus 로고    scopus 로고
    • Modification of PATase by L/F-transferase generates a ClpS-dependent N-end rule substrate in Escherichia coli
    • Ninnis, R. L., Spall, S. K., Talbo, G. H., Truscott, K. N., and Dougan, D. A. (2009) Modification of PATase by L/F-transferase generates a ClpS-dependent N-end rule substrate in Escherichia coli. EMBO J. 28, 1732-1744
    • (2009) EMBO J. , vol.28 , pp. 1732-1744
    • Ninnis, R.L.1    Spall, S.K.2    Talbo, G.H.3    Truscott, K.N.4    Dougan, D.A.5
  • 29
    • 77952686698 scopus 로고    scopus 로고
    • Translation initiation region dependency of translation initiation in Escherichia coli by IF1 and kasugamycin
    • Surkov, S., Nilsson, H., Rasmussen, L. C., Sperling-Petersen, H. U., and Isaksson, L. A. (2010) Translation initiation region dependency of translation initiation in Escherichia coli by IF1 and kasugamycin. FEBS J. 277, 2428-2439
    • (2010) FEBS J. , vol.277 , pp. 2428-2439
    • Surkov, S.1    Nilsson, H.2    Rasmussen, L.C.3    Sperling-Petersen, H.U.4    Isaksson, L.A.5
  • 30
    • 0032246224 scopus 로고    scopus 로고
    • The analysis of translational activity using a reporter gene constructed from repeats of an antibody-binding domain from protein A
    • Björnsson, A., Mottagui-Tabar, S., and Isaksson, L. A. (1998) The analysis of translational activity using a reporter gene constructed from repeats of an antibody-binding domain from protein A. Methods Mol. Biol. 77, 75-91
    • (1998) Methods Mol. Biol. , vol.77 , pp. 75-91
    • Björnsson, A.1    Mottagui-Tabar, S.2    Isaksson, L.A.3
  • 33
    • 54049111071 scopus 로고    scopus 로고
    • Tuning the strength of a bacterial N-end rule degradation signal
    • Wang, K. H., Oakes, E. S., Sauer, R. T., and Baker, T. A. (2008) Tuning the strength of a bacterial N-end rule degradation signal. J. Biol. Chem. 283, 24600-24607
    • (2008) J. Biol. Chem. , vol.283 , pp. 24600-24607
    • Wang, K.H.1    Oakes, E.S.2    Sauer, R.T.3    Baker, T.A.4
  • 34
    • 0030805979 scopus 로고    scopus 로고
    • Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12
    • Link, A. J., Robison, K., and Church, G. M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18, 1259-1313
    • (1997) Electrophoresis , vol.18 , pp. 1259-1313
    • Link, A.J.1    Robison, K.2    Church, G.M.3
  • 35
    • 0036210995 scopus 로고    scopus 로고
    • ClpS, a substrate modulator of the ClpAP machine
    • Dougan, D. A., Reid, B. G., Horwich, A. L., and Bukau, B. (2002) ClpS, a substrate modulator of the ClpAP machine. Mol. Cell 9, 673-683
    • (2002) Mol. Cell , vol.9 , pp. 673-683
    • Dougan, D.A.1    Reid, B.G.2    Horwich, A.L.3    Bukau, B.4
  • 36
    • 77249117211 scopus 로고    scopus 로고
    • The AAAClpX machine unfolds a keystone subunit to remodel the Mu transpososome
    • Abdelhakim, A. H., Sauer, R. T., and Baker, T. A. (2010) The AAAClpX machine unfolds a keystone subunit to remodel the Mu transpososome. Proc. Natl. Acad. Sci. U.S.A. 107, 2437-2442
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 2437-2442
    • Abdelhakim, A.H.1    Sauer, R.T.2    Baker, T.A.3
  • 37
    • 0034596991 scopus 로고    scopus 로고
    • Subunit-specific degradation of theUmuD/D heterodimer by the ClpXP protease: The role of trans recognition in UmuD stability
    • Gonzalez, M., Rasulova, F., Maurizi, M. R., and Woodgate, R. (2000) Subunit-specific degradation of theUmuD/D heterodimer by the ClpXP protease: the role of trans recognition in UmuD stability. EMBO J. 19, 5251-5258
    • (2000) EMBO J. , vol.19 , pp. 5251-5258
    • Gonzalez, M.1    Rasulova, F.2    Maurizi, M.R.3    Woodgate, R.4


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