The Top 10 oomycete pathogens in molecular plant pathology

Molecular Plant Pathology

Volumn 16, Issue 4, 2015, Pages 413-434

  Kamoun, Sophien ^a   Furzer, Oliver ^a   Jones, Jonathan D G ^a   Judelson, Howard S ^b   Ali, Gul Shad ^c   Dalio, Ronaldo J D ^d   Roy, Sanjoy Guha ^e   Schena, Leonardo ^f   Zambounis, Antonios ^g   Panabières, Franck ^h   Cahill, David ⁱ   Ruocco, Michelina ^j   Figueiredo, Andreia ^k   Chen, Xiao Ren ^l   Hulvey, Jon ^m   Stam, Remco ⁿ   Lamour, Kurt ^o   Gijzen, Mark ^p   Tyler, Brett M ^q   Grünwald, Niklaus J ^r   Mukhtar, M Shahid ^s   Tomé, Daniel F A ^t   Tör, Mahmut ^u   Van Den Ackerveken, Guido ^v   Mcdowell, John ^w   Daayf, Fouad ^x   Fry, William E ^y   Lindqvist Kreuze, Hannele ^z   Meijer, Harold J G ^aa   Petre, Benjamin ^a,ab   Ristaino, Jean ^ac   Yoshida, Kentaro ^a   Birch, Paul R J ⁿ   Govers, Francine ^aa   more..

^a NORWICH RESEARCH PARK   (United Kingdom)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF FLORIDA   (United States)

^d INSTITUTO AGRONÔMICO   (Brazil)

^e WEST BENGAL STATE UNIVERSITY   (India)

^f UNIVERSITY MEDITERRANEA OF REGGIO CALABRIA   (Italy)

^g INRA Institut National de la Recherche Agronomique   (France)

^h CNRS   (France)

ⁱ DEAKIN UNIVERSITY   (Australia)

^j INSTITUTE FOR SUSTAINABLE PLANT PROTECTION   (Italy)

^k UNIVERSITY OF LISBON   (Portugal)

^l YANGZHOU UNIVERSITY   (China)

^m UNIVERSITY OF MASSACHUSETTS   (United States)

ⁿ UNIVERSITY OF DUNDEE   (United Kingdom)

^o UNIVERSITY OF TENNESSEE   (United States)

^p AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^q OREGON STATE UNIVERSITY   (United States)

^r HORTICULTURAL CROPS RESEARCH LABORATORY   (United States)

^s UNIVERSITY OF ALABAMA AT BIRMINGHAM   (United States)

^t UNIVERSITY OF WARWICK   (United Kingdom)

^u UNIVERSITY OF WORCESTER   (United Kingdom)

^v UTRECHT UNIVERSITY   (Netherlands)

^w VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

^x UNIVERSITY OF MANITOBA   (Canada)

^y Department of Obstetrics Gynecology   (United States)

^z INTERNATIONAL POTATO CENTER   (Peru)

^aa WAGENINGEN UNIVERSITY   (Netherlands)

^ab UNIVERSITÉ DE LORRAINE   (France)

^ac NORTH CAROLINA STATE UNIVERSITY   (United States)

more..

Author keywords

Diversity; Genomics; Microbiology; Oomycetes plant pathology

Indexed keywords

ALBUGO CANDIDA; EUKARYOTA; HYALOPERONOSPORA; OOMYCETES; PHYTOPHTHORA CAPSICI; PHYTOPHTHORA CINNAMOMI; PHYTOPHTHORA INFESTANS; PHYTOPHTHORA PARASITICA; PHYTOPHTHORA RAMORUM; PHYTOPHTHORA SOJAE; PLASMOPARA VITICOLA; PYTHIUM ULTIMUM;

CLASSIFICATION; MICROBIOLOGY; OOMYCETES; PATHOGENICITY; PLANT;

OOMYCETES; PLANTS;

EID: 84928215460     PISSN: 14646722     EISSN: 13643703     Source Type: Journal    
DOI: 10.1111/mpp.12190     Document Type: Article

References (233)

1. Adhikari, B.N., Hamilton, J.P., Zerillo, M.M., Tisserat, N., Levesque, C.A. and Buell, C.R. (2013) Comparative genomics reveals insight into virulence strategies of plant pathogenic oomycetes. PLoS ONE, 8, e75072.
2. Adhikari, T.B., Liu, J.Q., Mathur, S., Wu, C.R.X. and Rimmer, S.R. (2003) Genetic and molecular analyses in crosses of race 2 and race 7 of Albugo candida. Phytopathology, 93, 959-965.
3. Agrios, G.N. (2005) Plant Pathology. Burlington, Massachusetts: Elsevier Academic Press Publications.
4. Ah Fong, A.M.V. and Judelson, H.S. (2003) Cell cycle regulator Cdc14 is expressed during sporulation but not hyphal growth in the fungus-like oomycete Phytophthora infestans. Mol. Microbiol. 50, 487-494.
5. Akinsanmi, O.A. and Drenth, A. (2013) Phosphite and metalaxyl rejuvenate macadamia trees in decline caused by Phytophthora cinnamomi. Crop Protect. 53, 29-36.
6. Allardyce, J.A., Rookes, J.E., Hussain, H.I. and Cahill, D.M. (2013) Transcriptional profiling of Zea mays roots reveals roles for jasmonic acid and terpenoids in resistance against Phytophthora cinnamomi. Funct. Integr. Genomics, 13, 217-228.
7. Allen, R.L., Bittner-Eddy, P.D., Grenvitte-Briggs, L.J., Meitz, J.C., Rehmany, A.P., Rose, L.E. and Beynon, J.L. (2004) Host-parasite coevolutionary conflict between Arabidopsis and downy mildew. Science, 306, 1957-1960.
8. Andres, J.L., Rivera, A. and Fernandez, J.A. (2003) Phytophthora nicotianae pathogenic to pepper in northwest spain. J. Plant Pathol. 85, 91-98.
9. Armstrong, M.R., Whisson, S.C., Pritchard, L., Bos, J.I., Venter, E., Avrova, A.O., Rehmany, A.P., Bohme, U., Brooks, K., Cherevach, I., Hamlin, N., White, B., Fraser, A., Lord, A., Quail, M.A., Churcher, C., Hall, N., Berriman, M., Huang, S., Kamoun, S., Beynon, J.L. and Birch, P.R. (2005) An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognized in the host cytoplasm. Proc. Natl. Acad. Sci. USA, 102, 7766-7771.
10. Attard, A., Gourgues, M., Galiana, E., Panabieres, F., Ponchet, M. and Keller, H. (2008) Strategies of attack and defense in plant-oomycete interactions, accentuated for Phytophthora parasitica Dastur (syn P.nicotianae Breda de Haan). J. Plant Physiol. 165, 83-94.
11. Attard, A., Gourgues, M., Callemeyn-Torre, N. and Keller, H. (2010) The immediate activation of defense responses in Arabidopsis roots is not sufficient to prevent Phytophthora parasitica infection. New Phytol. 187, 449-460.
12. Australian Government Department of Environment (2014) Threat Abatement Plan for Disease in Natural Ecosystems Caused by Phytophthora cinnamomi. Canberra: Commonwealth of Australia.
13. Awasthi, R.P., Nashaat, N.I., Kolte, S.J., Tewari, A.K., Meena, P.D. and Renu, B. (2012) Screening of putative resistant sources against Indian and exotic isolates of Albugo candida inciting white rust in rapeseed-mustard. J. Oilseed Brassica, 3, 27-37.
14. Bains, S.S. and Jhooty, J.S. (1985) Association of Peronospora-parasitica with Albugo-candida on Brassica-juncea leaves. J. Phytopathol. 112, 28-31.
15. Baxter, L., Tripathy, S., Ishaque, N., Boot, N., Cabral, A., Kemen, E., Thines, M., Ah-Fong, A., Anderson, R., Badejoko, W., Bittner-Eddy, P., Boore, J.L., Chibucos, M.C., Coates, M., Dehal, P., Delehaunty, K., Dong, S., Downton, P., Dumas, B., Fabro, G., Fronick, C., Fuerstenberg, S.I., Fulton, L., Gaulin, E., Govers, F., Hughes, L., Humphray, S., Jiang, R.H.Y., Judelson, H., Kamoun, S., Kyung, K., Meijer, H., Minx, P., Morris, P., Nelson, J., Phuntumart, V., Qutob, D., Rehmany, A., Rougon-Cardoso, A., Ryden, P., Torto-Alalibo, T., Studholme, D., Wang, Y., Win, J., Wood, J., Clifton, S.W., Rogers, J., Van den Ackerveken, G., Jones, J.D.G., McDowell, J.M., Beynon, J. and Tyler, B.M. (2010) Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome. Science, 330, 1549-1551.
16. Blum, M., Waldner, M. and Gisi, U. (2010) A single point mutation in the novel PvCesA3 gene confers resistance to the carboxylic acid amide fungicide mandipropamid in Plasmopara viticola. Fungal Genet. Biol. 47, 499-510.
17. Bonnet, P., Lacourt, I., Venard, P. and Ricci, P. (1994) Diversity in pathogenicity to tobacco and in elicitin production among isolates of Phytophthora parasitica. J. Phytopathol. 141, 25-37.
18. Borhan, M.H., Holub, E.B., Beynon, J.L., Rozwadowski, K. and Rimmer, S.R. (2004) The Arabidopsis TIR-NB-LRR gene RAC1 confers resistance to Albugo candida (white rust) and is dependent on EDS1 but not PAD4. Mol. Plant-Microbe Interact. 17, 711-719.
19. Borhan, M.H., Gunn, N., Cooper, A., Gulden, S., Tör, M., Rimmer, S.R. and Holub, E.B. (2008) WRR4 encodes a TIR-NB-LRR protein that confers broad-spectrum white rust resistance in Arabidopsis thaliana to four physiological races of Albugo candida. Mol. Plant-Microbe Interact. 21, 757-768.
20. Borhan, M.H., Holub, E.B., Kindrachuk, C., Omidi, M., Bozorgmanesh-Frad, G. and Rimmer, S.R. (2010) WRR4, a broad-spectrum TIR-NB-LRR gene from Arabidopsis thaliana that confers white rust resistance in transgenic oilseed brassica crops. Mol. Plant Pathol. 11, 283-291.
21. Bos, J.I., Armstrong, M.R., Gilroy, E.M., Boevink, P.C., Hein, I., Taylor, R.M., Zhendong, T., Engelhardt, S., Vetukuri, R.R., Harrower, B., Dixelius, C., Bryan, G., Sadanandom, A., Whisson, S.C., Kamoun, S. and Birch, P.R. (2010) Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proc. Natl. Acad. Sci. USA, 107, 9909-9914.
22. Bozkurt, T.O., Schornack, S., Banfield, M.J. and Kamoun, S. (2012) Oomycetes, effectors, and all that jazz. Curr. Opin. Plant Biol. 15, 483-492.
23. Brasier, C. and Webber, J. (2010) Plant pathology: sudden larch death. Nature, 466, 824-825.
24. Brasier, C.M. (2008) The biosecurity threat to the UK and global environment from international trade in plants. Plant Pathol. 57, 792-808.
25. Brasier, C.M., Vettraino, A.M., Chang, T.T. and Vannini, A. (2010) Phytophthora lateralis discovered in an old growth Chamaecyparis forest in Taiwan. Plant Pathol. 59, 595-603.
26. Cabral, A., Stassen, J.H., Seidl, M.F., Bautor, J., Parker, J.E. and Van den Ackerveken, G. (2011) Identification of Hyaloperonospora arabidopsidis transcript sequences expressed during infection reveals isolate-specific effectors. PLoS ONE, 6, e19328.
27. Cabral, A., Oome, S., Sander, N., Kufner, I., Nurnberger, T. and Van den Ackerveken, G. (2012) Nontoxic Nep1-like proteins of the downy mildew pathogen Hyaloperonospora arabidopsidis: repression of necrosis-inducing activity by a surface-exposed region. Mol. Plant-Microbe Interact. 25, 697-708.
28. Caillaud, M.-C., Piquerez, S.J.M., Fabro, G., Steinbrenner, J., Ishaque, N., Beynon, J. and Jones, J.D. (2011) Subcellular localization of the H.arabidopsidis RxLR effector repertoire identifies the extrahaustorial membrane-localized HaRxL17 that confers enhanced plant susceptibility. Plant J. 69, 252-265.
29. Casagrande, K., Falginella, L., Castellarin, S., Testolin, R. and Di Gaspero, G. (2011) Defence responses in Rpv3-dependent resistance to grapevine downy mildew. Planta, 234, 1097-1109.
30. Chamnanpunt, J., Shan, W.X. and Tyler, B.M. (2001) High frequency mitotic gene conversion in genetic hybrids of the oomycete Phytophthora sojae. Proc. Natl. Acad. Sci. USA, 98, 14530-14535.
31. Chen, W., Delmotte, F., Richard-Cervera, S., Douence, L., Greif, C. and Corio-Costet, M. (2007) At least two origins of fungicide resistance in grapevine downy mildew populations. Appl. Environ. Microbiol. 73, 5162-5172.
32. Chen, X.R., Xing, Y.P., Li, Y.P., Tong, Y.H. and Xu, J.Y. (2013) RNA-Seq reveals infection-related gene expression changes in Phytophthora capsici. PLoS ONE, 8, e74588.
33. Cline, E.T., Farr, D.F. and Rossman, A.Y. (2008) Synopsis of Phytophthora with accurate scientific names, host range, and geographic distribution. Plant Health Progress, doi:10.1094/PHP-2008-0318-01-RS.
34. Coates, M.E. and Beynon, J.L. (2010) Hyaloperonospora arabidopsidis as a Pathogen Model. Annu. Rev. Phytopathol. 48, 329-345.
35. Colas, V., Lacourt, I., Ricci, P., Vanlerberghe-Masutti, F., Poupet, A. and Panabieres, F. (1998) Diversity of virulence in Phytophthora parasitica on tobacco, as reflected by nuclear RFLPs. Phytopathology, 88, 205-212.
36. Colas, V., Conrod, S., Venard, P., Keller, H., Ricci, P. and Panabieres, F. (2001) Elicitin genes expressed invitro by certain tobacco isolates of Phytophthora parasitica are down regulated during compatible interactions. Mol. Plant-Microbe Interact. 14, 326-335.
37. Cooke, D.E.L., Cano, L.M., Raffaele, S., Bain, R.A., Cooke, L.R., Etherington, G.J., Deahl, K.L., Farrer, R.A., Gilroy, E.M., Goss, E.M., Grünwald, N.J., Hein, I., Maclean, D.J., McNicol, J.W., Randall, E., Oliva, R.F., Pel, M.A., Shaw, D.S., Squires, J.N., Taylor, M.C., Vleeshouwers, V.G.A.A., Birch, P.R.J., Lees, A.K. and Kamoun, S. (2012) Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathog. 8, e1002940.
38. Cooper, A.J., Latunde-Dada, A.O., Woods-Tör, A., Lynn, J., Lucas, J.A., Crute, I.R. and Holub, E.B. (2008) Basic compatibility of Albugo candida in Arabidopsis thaliana and Brassica juncea causes broad-spectrum suppression of innate immunity. Mol. Plant-Microbe Interact. 21, 745-756.
39. Crane, C.E. and Shearer, B.L. (2014) Comparison of phosphite application methods for control of Phytophthora cinnamomi in threatened communities. Australas. Plant Pathol. 43, 143-149.
40. Crute, I., Beynon, J., Dangl, J., Holub, E., Mauch-Mani, B., Slusarenko, A., Staskawicz, B. and Ausubel, F. (1994) Microbial pathogenesis of Arabidopsis. In: Arabidopsis (Meyerowitz, E.M. and Somerville, C.R., eds), pp. 705-747. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
41. Dean, R., Van Kan, J.A.L., Pretorius, Z.A., Hammond-Kosack, K.E., Di Pietro, A., Spanu, P.D., Rudd, J.J., Dickman, M., Kahmann, R., Ellis, J. and Foster, G.D. (2012) The top 10 fungal pathogens in molecular plant pathology. Mol. Plant Pathol. 13, 414-430.
42. DeArce, M. (2008) Correspondence of Charles Darwin on James Torbitt's project to breed blight-resistant potatoes. Arch. Nat. Hist. 35, 208-222.
43. Delmotte, F., Mestre, P., Schneider, C., Kassemeyer, H.-H., Kozma, P., Richart-Cervera, S., Rouxela, M. and Delière, L. (2013) Rapid and multiregional adaptation to host partial resistance in a plant pathogenic oomycete: evidence from European populations of Plasmopara viticola, the causal agent of grapevine downy mildew. Infect. Genet. Evol. 27, 500-508.
44. Dempsey, R.W., Merchant, A. and Tausz, M. (2012) Differences in ascorbate and glutathione levels as indicators of resistance and susceptibility in Eucalyptus trees infected with Phytophthora cinnamomi. Tree Physiol. 32, 1148-1160.
45. Dick, M.W. (2001) Straminipilous Fungi. Dordrecht: Kluwer Academic Publishers.
46. Dong, S., Stam, R., Cano, L.M., Song, J., Sklenar, J., Yoshida, K., Bozkurt, T.O., Oliva, R., Liu, Z., Tian, M., Win, J., Banfield, M.J., Jones, A.M.E., van der Hoorn, R.A.L. and Kamoun, S. (2014) Effector specialization in a lineage of the Irish Potato Famine Pathogen. Science, 343, 552-555.
47. Dorrance, A. and Grünwald, N.J. (2009) Phytophthora sojae: diversity among and within populations. In: Oomycete Genetics and Genomics: Diversity, Interactions, and Research Tools (Lamour, K. and Kamoun, S., eds), pp. 197-212. Hoboken, New Jersey: John Wiley & Sons.
48. Dou, D., Kale, S.D., Wang, X., Jiang, R.H.Y., Bruce, N.A., Arredondo, F.D., Zhang, X. and Tyler, B.M. (2008) RXLR-mediated entry of Phytophthora sojae effector Avr1b into soybean cells does not require pathogen-encoded machinery. Plant Cell, 20, 1930-1947.
49. Drenth, A., Tas, I.C.Q. and Govers, F. (1994) DNA fingerprinting uncovers a new sexually reproducing population of Phytophthora infestans in the Netherlands. Eur. J. Plant Pathol. 100, 97-107.
50. Dunn, A., Milgroom, M., Meitz, J., McLeod, A., Fry, W., McGrath, M., Dillard, H. and Smart, C. (2010) Population structure and resistance to mefenoxam of Phytophthora capsici in New York State. Plant Dis. 94, 1461-1468.
51. Dunstan, W.A., Rudman, T., Shearer, B.L., Moore, N.A., Paap, T., Calver, M.C., Dell, B. and Hardy, G.E.S.J. (2010) Containment and spot eradication of a highly destructive, invasive plant pathogen (P.cinnamomi) in natural ecosystems. Biol. Invasions, 12, 913-925.
52. Elliott, M., Sumampong, G., Varga, A., Shamoun, S.F., James, D., Masri, S. and Gruenwald, N.J. (2011) Phenotypic differences among three clonal lineages of Phytophthora ramorum. For. Pathol. 41, 7-14.
53. Enkerli, K., Hahn, M.G. and Mims, C.W. (1997) Ultrastructure of compatible and incompatible interactions of soybean roots infected with the plant pathogenic oomycete Phytophthora sojae. Can. J. Bot. 75, 1494-1508.
54. Erwin, D.C. and Ribeiro, O.K. (1996) Phytophthora Diseases Worldwide. St. Paul, MN: American Phytopathological Society.
55. Eshraghi, L., Anderson, J.P., Aryamanesh, N., McComb, J.A., Shearer, B.S. and Hardy, G.St.J.E. (2014) Suppression of the auxin response pathway enhances susceptibility to Phytophthora cinnamomi while phosphite-mediated resistance stimulates the auxin signalling pathway. BMC Plant Biol. 14, 68.
56. Fabro, G., Steinbrenner, J., Coates, M., Ishaque, N., Baxter, L., Studholme, D.J., Körner, E., Allen, R.L., Piquerez, S.J.M., Rougon-Cardoso, A., Greenshields, D., Lei, R., Badel, J.L., Caillaud, M.-C., Sohn, K.-H., Van den Ackerveken, G., Parker, J.E., Beynon, J. and Jones, J.D.G. (2011) Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity. PLoS Pathog. 7, e1002348.
57. Fahlgren, N., Bollmann, S.R., Kasschau, K.D., Cuperus, J.T., Press, C.M., Sullivan, C.M., Chapman, E.J., Hoyer, J.S., Gilbert, K.B., Grünwald, N.J. and Carrington, J.C. (2013) Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs. PLoS ONE, 8, e77181.
58. Farr, D.F. and Rossman, A.Y. (2014) Fungal databases, Systematic Mycology and Microbiology Laboratory, ARS, USDA. Available at: http://nt.ars-grin.gov/fungaldatabases/ [accessed on Oct 6, 2014].
59. Feng, B.Z. and Li, P.Q. (2013) Molecular characterization and functional analysis of the Nep1-like protein-encoding gene from Phytophthora capsici. Genet. Mol. Res. 12, 1468-1478.
60. Feng, B.Z., Li, P.Q., Wang, H.M. and Zhang, X.G. (2010) Functional analysis of Pcpme6 from oomycete plant pathogen Phytophthora capsici. Microb. Pathog. 49, 23-31.
61. Fisher, M.C., Henk, D.A., Briggs, C.J., Brownstein, J.S., Madoff, L.C., McCraw, S.L. and Gurr S.J. (2012) Emerging fungal threats to animal, plant and ecosystem health. Nature, 484, 186-194.
62. Fontaine, M., Austerlitz, F., Giraud, T., Labbe, F., Papura, D., Richard-Cervera, S. and Delmotte, F. (2013) Genetic signature of a range expansion and leap-frog event after the recent invasion of Europe by the grapevine downy mildew pathogen Plasmopara viticola. Mol. Ecol. 22, 2771-2786.
63. Francis, D.M. and St. Clair, D.A. (1997) Population genetics of Pythium ultimum. Phytopathology, 87, 454-461.
64. Fry, W.E., McGrath, M.T., Seaman, A., Zitter, T.A., McLeod, A., Danies, G., Small, I.M., Myers, K., Everts, K., Gevens, A.J., Gugino, B.K., Johnson, S.B., Judelson, H., Ristaino, J., Roberts, P., Secor, G., Seebold, K., Snover-Clift, K., Wyenandt, A., Grünwald, N.J. and Smart, C.D. (2013) The 2009 late blight pandemic in the eastern United States-causes and results. Plant Dis. 97, 296-306.
65. Galet, P. (1977) Mildiou. Paris: Lavoisier.
66. Garbelotto, M. and Hayden, K.J. (2012) Sudden oak death: interactions of the exotic oomycete Phytophthora ramorum with naïve North American hosts. Eukaryot. Cell, 11, 1313-1323.
67. Gessler, C., Pertot, I. and Perazzolli, M. (2011) Plasmopara viticola: a review of knowledge on downy mildew of grapevine and effective disease management. Phytopathol. Mediterr. 50, 3-44.
68. Gijzen, M. and Qutob, D. (2009) Phytophthora sojae and Soybean. In: Oomycete Genetics and Genomics: Diversity, Interactions, and Research Tools (Lamour, K. and Kamoun, S., eds), pp. 303-329. Hoboken, New Jersey: John Wiley & Sons.
69. Gobbin, D., Jermini, M., Loskill, B., Pertot, I., Raynal, M. and Gessler, C. (2005) Importance of secondary inoculum of Plasmopara viticola to epidemics of grapevine downy mildew. Plant Pathol. 54, 522-534.
70. Gobena, D., McGrath, M.T. and Lamour, K.H. (2012) Survival and spread of Phytophthora capsici on Long Island, New York. Mycol. Prog. 11, 761-768.
71. Gobena, D.J., Roig, J., Hulvey, J. and Lamour, K. (2010) Genetic diversity of the vegetable pathogen Phytophthora capsici in Argentina. Phytopathology, 100, S41.
72. Gómez-Zeledón, J., Zipper, R. and Spring, O. (2013) Assessment of phenotypic diversity of Plasmopara viticola on Vitis genotypes with different resistance. Crop Protection, 54, 221-228.
73. Goodwin, S.B., Drenth, A. and Fry, W.E. (1992) Cloning and genetic analyses of two highly polymorphic, moderately repetitive nuclear DNAs from Phytophthora infestans. Curr. Genet. 22, 107-115.
74. Goodwin, S.B., Cohen, B.A. and Fry, W.E. (1994) Panglobal distribution of a single clonal lineage of the Irish potato famine fungus. Proc. Natl. Acad. Sci. USA, 91, 11591-11595.
75. Goss, E.M., Carbone, I. and Grünwald, N.J. (2009a) Ancient isolation and independent evolution of the three clonal lineages of the exotic sudden oak death pathogen Phytophthora ramorum. Mol. Ecol. 18, 1161-1174.
76. Goss, E.M., Larsen, M., Chastagner, G.A., Givens, D.R. and Grünwald, N.J. (2009b) Population genetic analysis infers migration pathways of Phytophthora ramorum in US nurseries. PLoS Pathog. 5, e1000583.
77. Goss, E.M., Larsen, M., Vercauteren, A., Werres, S., Heungens, K. and Grünwald, N.J. (2011) Phytophthora ramorum in Canada: evidence for migration within North America and from Europe. Phytopathology, 101, 166-171.
78. Goss, E.M., Press, C.M. and Grünwald, N.J. (2013) Evolution of RXLR-class effectors in the oomycete plant pathogen Phytophthora ramorum. PLoS ONE, 8, e79347.
79. Govers, F. and Gijzen, M. (2006) Phytophthora genomics: the plant destroyers' genome decoded. Mol. Plant-Microbe Interact. 19, 1295-1301.
80. Gracia-Garza, J.A., Little, M., Brown, W., Blom, T.J., Schneider, K., Allen, W. and Potter, J. (2003) Efficacy of various biological control agents and biorationals against Pythium root rot in poinsettia. Horttechnology, 13, 149-153.
81. Granke, L., Windstam, S., Hoch, H., Smart, C. and Hausbeck, M. (2009) Dispersal and movement mechanisms of Phytophthora capsici sporangia. Phytopathology, 99, 1258-1264.
82. Granke, L., Quesada-Ocampo, L., Lamour, K. and Hausbeck, M.K. (2012) Advances in research on Phytophthora capsici on vegetable crops in the United States. Plant Dis. 95, 1588-1600.
83. Grenville-Briggs, L.J., Horner, N.R., Phillips, A.J., Beakes, G.W. and Van West, P. (2013) A family of small tyrosine rich proteins is essential for oogonial and oospore cell wall development of the mycoparasitic oomycete Pythium oligandrum. Fungal Biol. 117, 163-172.
84. Grünwald, N.J., Goss, E.M. and Press, C.M. (2008) Phytophthora ramorum: a pathogen with a remarkably wide host-range causing sudden oak death on oaks and ramorum blight on woody ornamentals. Mol. Plant Pathol. 9, 729-740.
85. Grünwald, N.J., Goss, E.M., Ivors, K., Garbelotto, M., Martin, F.N., Prospero, S., Hansen, E.M., Bonants, P.J.M., Hamelin, R.C., Chastagner, G., Werres, S., Rizzo, D.M., Abad, G., Beales, P., Bilodeau, G.J., Blomquist, C.L., Brasier, C., Brière, S.C., Chandelier, A., Davidson, J.M., Denman, S., Elliott, M., Frankel, S.J., Goheen, E.M., de Gruyter, H., Heungens, K., James, D., Kanaskie, A., McWilliams, M.G., Veld, W.M., Moralejo, E., Osterbauer, N.K., Palm, M.E., Parke, J.L., Sierra, A.M.P., Shamoun, S.F., Shishkoff, N., Tooley, P.W., Vettraino, A.M., Webber, J. and Widmer, T.L. (2009) Standardizing the nomenclature for clonal lineages of the sudden oak death pathogen, Phytophthora ramorum. Phytopathology, 99, 792-795.
86. Grünwald, N.J., Garbelotto, M., Goss, E.M., Heungens, K. and Prospero, S. (2012) Emergence of the sudden oak death pathogen Phytophthora ramorum. Trends Microbiol. 20, 131-138.
87. Guha Roy, S., Mukherjee, S.K., Bhattacharyya, S. and Khatua, D.C. (2009) Molecular identification of Phytophthora sp. affecting some economicaly important crops in eastern India through ITS-RFLP and sequencing of the ITS region. J. Phytopathol. 157, 666-674.
88. Gunderson, J.H., Elwood, H., Ingold, H., Kindle, A. and Sogin, M.L. (1987) Phylogenetic relationships between chlororphytes, chrysophytes, and oomycetes. Proc. Natl. Acad. Sci. USA, 84, 5823-5827.
89. Gunning, K., Conlan, X.A., Parker, R.M., Dyson, G.A., Adams, M.J., Barnett, N.W. and Cahill, D.M. (2013) Profiling of secondary metabolites in blue lupin inoculated with Phytophthora cinnamomi following phosphite treatment. Funct. Plant Biol. 40, 1089-1097.
90. Haas, B.J., Kamoun, S., Zody, M.C., Jiang, R.H.Y., Handsaker, R.E., Cano, L.M., Grabherr, M., Kodira, C.D., Raffaele, S., Torto-Alalibo, T., Bozkurt, T.O., Ah-Fong, A.M.V., Alvarado, L., Anderson, V.L., Armstrong, M.R., Avrova, A.O., Baxter, L., Beynon, J.L., Boevink, P.C., Bollmann, S.R., Bos, J.I.B., Bulone, V., Cai, G., Cakir, C., Carrington, J.C., Chawner, M., Conti, L., Costanzo, S., Ewan, R., Fahlgren, N., Fischbach, M.l.A., Fugelstad, J., Gilroy, E.M., Gnerre, S., Green, P.J., Grenville-Briggs, L.J., Griffith, J.M., Grünwald, N.J., Horn, K., Horner, N.R., Hu, C.H., Huitema, E., Jeong, D.H., Jones, A.M.E., Jones, J.D.G., Jones, R.W., Karlsson, E.K., Kunjeti, S.G., Lamour, K., Liu, Z., Ma, L.J., Maclean, D.J., Chibucos, M.C., McDonald, H., McWalters, J., Meijer, H.J.G., Morgan, W., Morris, P.F., Munro, C.A., O'Neill, K., Ospina-Giraldo, M.D., Pinzon, A., Pritchard, L., Ramsahoye, B., Ren, Q., Restrepo, S., Roy, S., Sadanandom, A., Savidor, A., Schornack, S., Schwartz, D.C., Schumann, U.D., Schwessinger, B., Seyer, L., Sharpe, T., Silvar, C., Song, J., Studholme, D.J., Sykes, S., Thines, M., van de Vondervoort, P.J.I., Phuntumart, V., Wawra, S., Weide, R., Win, J., Young, C., Zhou, S., Fry, W.E., Meyers, B.C., van West, P., Ristaino, J.B., Govers, F., Birch, P.R.J., Whisson, S.C., Judelson, H.S. and Nusbaum, C. (2009) Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature, 461, 393-398.
91. Hausbeck, M.K. and Lamour, K.H. (2004) Phytophthora capsici on vegetable crops: research progress and management challenges. Plant Dis. 88, 1292-1303.
92. Haverkort, A., Boonekamp, P., Hutten, R., Jacobsen, E., Lotz, L., Kessel, G., Visser, R. and van der Vossen, E. (2008) Societal costs of late blight in potato and prospects of durable resistance through cisgenic modification. Potato Res. 51, 47-57.
93. Hee, W.Y., Torreña, P.S., Blackman, L.M. and Hardham, A.R. (2013) Phytophthora cinnamomi in Australia. In: Phytophthora: A Global Perspective (Lamour, K., ed.), CABI Plant Protection Series, No. 2, pp. 124-134. Wallingford, UK: CABI.
94. Heller, A. and Thines, M. (2009) Evidence for the importance of enzymatic digestion of epidermal walls during subepidermal sporulation and pustule opening in white blister rusts (Albuginaceae). Mycol. Res. 113 (Pt 6-7), 657-667.
95. Hildebrand, A.A. (1959) A root and stalk rot of soybeans caused by Phytophthora megasperma Drechsler var. sojae var. nov. Can. J. Bot. 37, 927-957.
96. Holub, E., Brose, E., Tör, M., Clay, C., Crute, I.R. and Beynon, J.L. (1994) Phenotypic and genotypic variation in the interaction between Arabidopsis thaliana and Albugo candida. Mol. Plant-Microbe Interact. 8, 916-928.
97. Holub, E.B. (2008) Natural history of Arabidopsis thaliana and oomycete symbioses. Eur. J. Plant Pathol. 122, 91-109.
98. Hu, C.H., Perez, F.G., Donahoo, R., McLeod, A., Myers, K., Ivors, K., Secor, G., Roberts, P.D., Fry, W.E., Deahl, K.L. and Ristaino, J.B. (2012) Recent genotypes of Phytophthora infestans in eastern USA reveal clonal populations and reappearance of mefenoxam sensitivity. Plant Dis. 96, 1323-1330.
99. Hu, J., Diao, Y., Zhou, Y., Lin, D., Bi, Y., Pang, Z., Trout Fryxell, R., Liu, X. and Lamour, K. (2013) Loss of heterozygosity drives clonal diversity of Phytophthora capsici in China. PLoS ONE, 8, e82691.
100. Hüberli, D., Hayden, K.J., Calver, M. and Garbelotto, M. (2012) Intraspecific variation in host susceptibility and climatic factors mediate epidemics of sudden oak death in western US forests. Plant Pathol. 61, 579-592.
101. Hulvey, J., Young, J., Finley, L. and Lamour, K. (2010) Loss of heterozygosity in Phytophthora capsici after N-ethyl-nitrosourea mutagenesis. Mycologia, 102, 27-32.
102. Hurtado-Gonzales, O., Aragon-Caballero, L., Apaza-Tapia, W., Donahoo, R. and Lamour, K. (2008) Survival and spread of Phytophthora capsici in coastal Peru. Phytopathology, 98, 688-694.
103. Hussain, H.I., Yi, Z., Rookes, J.E., Kong, L.X. and Cahill, D.M. (2013) Mesoporous silica nanoparticles as a biomolecule delivery vehicle in plants. J. Nanopart. Res. 15, 1-15.
104. Jiang, R.H.Y. and Tyler, B.M. (2012) Mechanisms and evolution of virulence in oomycetes. Annu. Rev. Phytopathol. 50, 295-318.
105. Jiang, R.H.Y., Tripathy, S., Govers, F. and Tyler, B.M. (2008) RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving super-family with more than 700 members. Proc. Natl. Acad. Sci. USA, 105, 4874-4879.
106. Jones, J.T., Haegeman, A., Danchin, E.G., Gaur, H.S., Helder, J., Jones, M.G., Kikuchi, T., Manzanilla-López, R., Palomares-Rius, J.E., Wesemael, W.M. and Perry, R.N. (2013) Top 10 plant-parasitic nematodes in molecular plant pathology. Mol. Plant Pathol. 14, 946-961.
107. Judelson, H.S. (1997) The genetics and biology of Phytophthora infestans: modern approaches to a historical challenge. Fungal Genet. Biol. 22, 65-76.
108. Judelson, H.S. and Blanco, F.A. (2005) The spores of Phytophthora: weapons of the plant destroyer. Nat. Rev. Microbiol. 3, 47-58.
109. Judelson, H.S. and Whittaker, S.L. (1995) Inactivation of transgenes in Phytophthora infestans is not associated with their deletion, methylation, or mutation. Curr. Genet. 28, 571-579.
110. Judelson, H.S., Tyler, B.M. and Michelmore, R.W. (1991) Transformation of the oomycete pathogen, Phytophthora infestans. Mol. Plant-Microbe Interact. 4, 602-607.
111. Jung, T., Colquhoun, I.J. and Hardy, G.E.S.J. (2013) New insights into the survival strategy of the invasive soilborne pathogen Phytophthora cinnamomi in different natural ecosystems in Western Australia. Forest Pathol. 43, 266-288.
112. Jupe, J., Stam, R., Howden, A.J., Morris, J.A., Zhang, R., Hedley, P.E. and Huitema, E. (2013) Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle. Genome Biol. 14, R63.
113. Kale, S.D., Gu, B., Capelluto, D.G.S., Dou, D.-L., Feldman, E., Rumore, A., Arredondo, F.D., Hanlon, R., Fudal, I., Rouxel, T., Lawrence, C.B., Shan, W. and Tyler, B.M. (2010) External lipid PI-3-P mediates entry of eukaryotic pathogen effectors into plant and animal host cells. Cell, 142, 284-295.
114. Kamoun, S. (2006) A catalogue of the effector secretome of plant pathogenic oomycetes. Annu. Rev. Phytopathol. 44, 41-60.
115. Kamoun, S., Hraber, P., Sobral, B., Nuss, D. and Govers, F. (1999) Initial assessment of gene diversity for the oomycete pathogen Phytophthora infestans based on expressed sequences. Fungal Genet. Biol. 28, 94-106.
116. Kasuga, T., Kozanitas, M., Bui, M., Hüberli, D., Rizzo, D.M. and Garbelotto, M. (2012) Phenotypic diversification is associated with host-induced transposon derepression in the sudden oak death pathogen Phytophthora ramorum. PLoS ONE, 7, e34728.
117. Kaufmann, M.J. and Gerdemann, J.W. (1958) Root and stem rot of soybeans caused by Phytophthora sojae n. sp. Phytopathology, 48, 201-208.
118. Kaur, P., Sivasithamparam, K. and Barbetti, M.J. (2008) Pathogenic behaviour of strains of Albugo candida from Brassica juncea (Indian mustard) and Raphanus raphanistrum (wild radish) in Western Australia. Australas. Plant Pathol. 37, 353-356.
119. Kemen, E., Schultz-Larsen, T., Kemen, A.C., Balmuth, A., Robert-Seilaniantz, A., Bailey, K., Holub, E., Studholme, D., MacLean, D. and Jones, J.D.G. (2011) Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis. PLoS Biol. 9, e1001094.
120. Kennelly, M.M., Gadoury, D.M., Wilcox, W.F., Magarey, P.A. and Seem, R.C. (2007) Primary infection, lesion productivity, and survival of sporangia in the grapevine downy mildew pathogen Plasmopara viticola. Phytopathology, 97, 512-522.
121. Kida, K., Tojo, M., Yano, K. and Kotani, S. (2006) First report of Pythium ultimum var. ultimum causing damping-off on okra in Japan. Plant Pathol. 56, 1042.
122. Koch, E. and Slusarenko, A. (1990) Arabidopsis is susceptible to infection by a downy mildew fungus. 2, 437-445.
123. Krings, M., Taylor, T.N. and Dotzler, N. (2011) The fossil record of the Peronosporomycetes (Oomycota). Mycologia, 103, 455-457.
124. Lalancette, N., Madden, L.V. and Ellis, M.A. (1987) A model for predicting the sporulation of Plasmopara viticola based on temperature and duration of high relative-humidity. Phytopathology, 77, 1699.
125. Lamour, K.H. and Hausbeck, M.K. (2000) Mefenoxam insensitivity and the sexual stage of Phytophthora capsici in Michigan cucurbit fields. Phytopathology, 90, 396-400.
126. Lamour, K.H. and Hu, J. (2013) Diversity and Phytophthora: a threat to forests, crops and traditional laboratory research-mini review. CAB Rev. 8, Number 38.
127. Lamour, K.H. and Kamoun, S. (2009) Oomycete Genetics and Genomics: Diversity, Interactions, and Research Tools. Hoboken, NJ: John Wiley &Sons.
128. Lamour, K.H., Mudge, J., Gobena, D., Hurtado-Gonzales, O.P., Schmutz, J., Kuo, A., Miller, N.A., Rice, B.J., Raffaele, S., Cano, L.M., Bharti, A.K., Donahoo, R.S., Finley, S., Huitema, E., Hulvey, J., Platt, D., Salamov, A., Savidor, A., Sharma, R., Stam, R., Storey, D., Thines, M., Win, J., Haas, B.J., Dinwiddie, D.L., Jenkins, J., Knight, J.R., Affourtit, J.P., Han, C.S., Chertkov, O., Lindquist, E.A., Detter, C., Grigoriev, I.V., Kamoun, S. and Kingsmore, S. (2012) Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici. Mol. Plant-Microbe Interact. 25, 1350-1360.
129. Lapin, D. and Van den Ackerveken, G. (2013) Susceptibility to plant disease: more than a failure of host immunity. Trends Plant Sci. 10, 546-554.
130. Leonian, L.H. (1922) Stem and fruit blight of peppers caused by Phytophthora capsici sp. nov. Phytopathology, 12, 401-408.
131. Levesque, C.A., Brouwer, H., Cano, L., Hamilton, J.P., Holt, C., Huitema, E., Robideau, G.P., Thines, M., Win, J., Zerillo, M.M., Beakes, G.W., Boore, J.L., Busam, D., Dumas, B., Ferriera, S., Fuerstenberg, S.I., Gachon, C.M., Gaulin, E., Govers, F., Grenville-Briggs, L., Horner, N., Hostetler, J., Jiang, R.H., Johnson, J., Krajaejun, T., Lin, H., Meijer, H.J., Moore, B., Morris, P., Phuntmart, V., Puiu, D., Shetty, J., Stajich, J.E., Tripathy, S., Wawra, S., van West, P., Whitty, B.R., Coutinho, P.M., Henrissat, B., Martin, F., Thomas, P.D., Tyler, B.M., De Vries, R.P., Kamoun, S., Yandell, M., Tisserat, N. and Buell, C.R. (2010) Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biol. 11, R73.
132. Li, C., Wang, J., Chien, D., Chujoy, E., Song, B. and VanderZaag, P. (2011) Cooperation-88: a high yielding, multi-purpose, late blight resistant cultivar growing in southwest China. Am. J. Pot. Res. 88, 190-194.
133. Links, M.G., Holub, E., Jiang, R.H., Sharpe, A.G., Hegedus, D., Beynon, E., Sillito, D., Clarke, W.E., Uzuhashi, S. and Borhan, M.H. (2011) De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes. BMC Genomics, 12, 503.
134. Liu, Z., Bos, J.I., Armstrong, M., Whisson, S.C., da Cunha, L., Torto-Alalibo, T., Win, J., Avrova, A.O., Wright, F., Birch, P.R. and Kamoun, S. (2005) Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans. Mol. Biol. Evol. 22, 659-672.
135. Lucas, B. and Griffiths, P.D. (2004) Evaluation of common bean accessions for resistance to Pythium ultimum. Hortscience, 39, 1193-1195.
136. Lucas, J., Hayter, J. and Crute, I. (1995) The downy mildews: host specificity and pathogenesis. In: Pathogenesis and Host Specificity in Plant Diseases (Singh, U. and Singh, R., eds), pp. 217-234. Oxford, UK: Permagon.
137. Madden, L.V., Hughes, G. and Ellis, M.A. (1995) Spatial heterogeneity of the incidence of grape downy mildew. Phytopathology, 85, 269-275.
138. Madden, L.V., Ellis, M.A., Lalancette, N., Hughes, G. and Wilson, L.L. (2000) Evaluation of a disease warning system for downy mildew of grapes. Plant Dis. 84, 549-554.
139. Mallard, S., Cantet, M., Massire, A., Bachellez, A., Ewert, S. and Lefebvre, V. (2013) A key QTL cluster is conserved among accessions and exhibits broad-spectrum resistance to Phytophthora capsici: a valuable locus for pepper breeding. Mol. Breed. 32, 349-364.
140. Mammella, M.A., Cacciola, S.O., Martin, F. and Schena, L. (2011) Genetic characterization of Phytophthora nicotianae by the analysis of polymorphic regions of the mitochondrial DNA. Fungal Biol. 115, 432-442.
141. Mammella, M.A., Martin, F.N., Cacciola, S.O., Coffey, M.D., Faedda, R. and Schena, L. (2013) Analyses of the population structure in a global collection of Phytophthora nicotianae isolates inferred from mitochondrial and nuclear DNA sequences. Phytopathology, 103, 610-622.
142. Mansfield, J., Genin, S., Magori, S., Citovsky, V., Sriariyanum, M., Ronald, P., Dow, M., Verdier, V., Beer, S.V., Machado, M.A., Toth, I., Salmond, G. and Foster, G.D. (2012) Top 10 plant pathogenic bacteria in molecular plant pathology. Mol. Plant Pathol. 13, 614-629.
143. Martin, F.N. (1995) Electrophoretic karyotype polymorphisms in the genus Pythium. Mycologia, 87, 333-353.
144. Martin, F.N. and Loper, J.E. (1999) Soilborne plant diseases caused by Pythium spp: ecology, epidemiology, and prospects for biological control. Crit. Rev. Plant Sci. 18, 111-181.
145. Martin, M.D., Cappellini, E., Samaniego, J.A., Zepeda, M.L., Campos, P.F., Seguin-Orlando, A., Wales, N., Orlando, L., Ho, S.Y.W., Dietrich, F.S., Mieczkowski, P.A., Heitman, J., Willerslev, E., Krogh, A., Ristaino, J.B. and Gilbert, M.T.P. (2013) Reconstructing genome evolution in historic samples of the Irish potato famine pathogen. Nat. Commun. 4, 2172.
146. Martin, M.D., Ho, S.Y., Wales, N., Ristaino, J.B. and Gilbert, M.T.P. (2014) Persistence of the mitochondrial lineage responsible for the Irish potato famine in extant new world Phytophthora infestans. Mol. Biol. Evol. 31, 1414-1420.
147. Matheron, M.E. and Matejka, J.C. (1990) Differential virulence of Phytophthora parasitica recovered from Citrus and other plants to rough lemon and tomato. Plant Dis. 74, 138-140.
148. McDowell, J.M. (2011) Genomes of obligate plant pathogens reveal adaptations for obligate parasitism. Proc. Natl. Acad. Sci. USA, 108, 8921-8922.
149. Meijer, H.J.G., Hua, C., Kots, K., Ketelaar, T. and Govers, F. (2014) Actin dynamics in Phytophthora infestans; rapidly reorganizing cables and immobile, long-lived plaques. Cell. Microbiol. 16, 948-961.
150. Meitz, J.C., Linde, C.C., Thompson, A., Langenhoven, S. and McLeod, A. (2010) Phytophthora capsici on vegetable hosts in South Africa: distribution, host range and genetic diversity. Australas. Plant Pathol. 39, 431-439.
151. Millardet, A. (1881) Notes sur les vignes américaines et opuscules divers sur le même sujet. Bordeaux.
152. Moralejo, E.P.-S.A.M., Alvarez, L.A., Belbahri, L., Lefort, F. and Descals, E. (2009) Multiple alien Phytophthora taxa discovered on diseased ornamental plants in Spain. Plant Pathol. 58, 100-110.
153. Morris, P.F. and Ward, E.W.B. (1992) Chemoattraction of zoospores of the soybean pathogen Phytophthora-sojae by isoflavones. Physiol. Molec. Plant Pathol. 40, 17-22.
154. Mukhtar, M.S., Carvunis, A.R., Dreze, M., Epple, P., Steinbrenner, J., Moore, J., Tasan, M., Galli, M., Hao, T., Nishimura, M.T., Pevzner, S.J., Donovan, S.E., Ghamsari, L., Santhanam, B., Romero, V., Poulin, M.M., Gebreab, F., Gutierrez, B.J., Tam, S, Monachello, D., Boxem, M., Harbort, C.J., McDonald, N., Gai, L., Chen, H., He, Y.; European Union Effectoromics Consortium, Vandenhaute, J., Roth, F.P., Hill, D.E., Ecker, J.R., Vidal, M., Beynon, J., Braun, P. and Dangl, J.L. (2011) Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science, 333, 596-601.
155. Nadiminti, P., Dong, Y., Sayer, C., Hay, P., Rookes, J.E., Boyd, B. and Cahill, D.M. (2013) Nanostructured liquid crystalline particles as an alternative delivery vehicle for plant agrochemicals. ACS Adv. Mater. Interfaces, 5, 1818-1826.
156. Naseby, D.C., Pascual, J.A. and Lynch, J.M. (2000) Effect of biocontrol strains of Trichoderma on plant growth, Pythium ultimum populations, soil microbial communities and soil enzyme activities. J. Appl. Microbiol. 88, 161-169.
157. Olson, H.A. and Benson, D.M. (2011) Characterization of Phytophthora spp. on floriculture crops in North Carolina. Plant Dis. 95, 1013-1020.
158. Olson, H.A., Jeffers, S.N., Ivors, K.L., Steddom, K.C., Williams-Woodward, J.L., Mmbaga, M.T., Benson, D.M. and Hong, C.X. (2013) Diversity and mefenoxam sensitivity of Phytophthora spp. associated with the ornamental horticulture industry in the southeastern United States. Plant Dis. 97, 86-92.
159. Pais, M., Win, J., Yoshida, K., Etherington, G.J., Cano, L.M., Raffaele, S., Banfield, M.J., Jones, A., Kamoun, S. and Saunders, D.G.O. (2013) From pathogen genomes to host plant processes: the power of plant parasitic oomycetes. Genome Biol. 14, 211.
160. Peressotti, E., Wiedemann-Merdinoglu, S., Delmotte, F., Bellin, D., Di Gaspero, G., Testolin, R., Merdinoglu, D. and Mestre, P. (2010) Breakdown of resistance to grapevine downy mildew upon limited deployment of a resistant variety. BMC Plant Biol. 10, 147.
161. Peters, R.D., Al-Mughrabi, K.I., Kalischuk, M.L., Dobinson, K., Conn, K., Alkher, H.A., Islam, M.R., Daayf, F., Lynn, J., Bizimungu, B., De Koeyer, D.L., Lévesque, A. and Kawchuk, L.M. (2014) Migration and recombination increases Phytophthora infestans population diversity and independent segregation of genotype specific loci. Can. J. Plant Pathol. 36, 73-82.
162. Petrie, G.A. (1975) Prevalence of oospores of Albugo cruciferarum in Brassica seed samples from western Canada 1967-1973. Can. Plant Dis. Surv. 55, 19-24.
163. Pieterse, C.M.J., Risseeuw, E.P. and Davidse, L.C. (1991) An inplanta induced gene of Phytophthora infestans codes for ubiquitin. Plant Mol. Biol. 17, 799-811.
164. Ploch, S. and Thines, M. (2011) Obligate biotrophic pathogens of the genus Albugo are widespread as asymptomatic endophytes in natural populations of Brassicaceae. Mol. Ecol. 20, 3692-3699.
165. Quesada-Ocampo, L.M. and Hausbeck, M.K. (2010) Resistance in tomato and wild relatives to crown and root rot caused by Phytophthora capsici. Phytopathology, 100, 619-627.
166. Qutob, D., Hraber, P., Sobral, B. and Gijzen, M. (2000) Comparative analysis of expressed sequences in Phytophthora sojae. Plant Phys. 123, 243-253.
167. Qutob, D., Kemmerling, B., Brunner, F., Kufner, I., Engelhardt, S., Gust, A.A., Luberacki, B., Seitz, H.U., Stahl, D., Rauhut, T., Glawischnig, E., Schween, G., Lacombe, B., Watanabe, N., Lam, E., Schlichting, R., Scheel, D., Nau, K., Dodt, G., Hubert, D., Gijzen, M. and Nürnberger, T. (2006) Phytotoxicity and innate immune responses induced by Nep1-like proteins. Plant Cell, 18, 3721-3744.
168. Qutob, D., Patrick Chapman, B. and Gijzen, M. (2013) Transgenerational gene silencing causes gain of virulence in a plant pathogen. Nat. Commun. 4, 1349.
169. Raffaele, S., Farrer, R.A., Cano, L.M., Studholme, D.J., MacLean, D., Thines, M., Jiang, R.H.Y., Zody, M.C., Kunjeti, S.G., Donofrio, N.M., Meyers, B.C., Nusbaum, C. and Kamoun, S. (2010) Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science, 330, 1540-1543.
170. Randall, E., Young, V., Sierotzki, H., Scalliet, G., Birch, P.R.J., Cooke, D.E.L., Csukai, M. and Whisson, S.C. (2014) Sequence diversity in the large subunit of RNA polymerase I contributes to Mefenoxam insensitivity in Phytophthora infestans. Mol. Plant Pathol. 15, 664-676.
171. Reeksting, B.J., Coetzer, N., Mahomed, W., Engelbrecht, J. and van den Berg, N. (2014) Denovo sequencing, assembly, and analysis of the root transcriptome of Persea americana (Mill.) in response to Phytophthora cinnamomi and flooding. PLoS ONE, 9, e86399.
172. Rehmany, A.P., Gordon, A., Rose, L.E., Allen, A.E., Armstrong, M.R., Whisson, S.C., Kamoun, S., Tyler, B.M., Birch, P.R. and Beynon, J.L. (2005) Differential recognition of highly divergent downy mildew avirulence gene alleles by RPP1 resistance genes from two Arabidopsis lines. Plant Cell, 17, 1839-1850.
173. Rimmer, S.R., Mathur, S. and Wu, C.R. (2000) Virulence of isolates of Albugo candida from western Canada to Brassica species. Can. J. Plant Pathol. 22, 235.
174. Rizzo, D.M., Garbelotto, M. and Hansen, E.M. (2005) Phytophthora ramorum: integrative research and management of an emerging pathogen in California and Oregon forests. Annu. Rev. Phytopathol. 43, 309-335.
175. Rodewald, J. and Trognitz, B. (2013) Solanum resistance genes against Phytophthora infestans and their corresponding avirulence genes. Mol. Plant Pathol. 14, 740-757.
176. Rookes, J.E., Wright, M.L. and Cahill, D.M. (2008) Elucidation of defence responses and signalling pathways induced in Arabidopsis thaliana following challenge with Phytophthora cinnamomi. Physiol. Mol. Plant Pathol. 72, 151-161.
177. Rossi, V. and Caffi, T. (2012) The role of rain in dispersal of the primary inoculum of Plasmopara viticola. Phytopathology, 102, 158-165.
178. Rossi, V., Giosue, S. and Caffi, T. (2009) Modelling the dynamics of infections caused by sexual and asexual spores during Plasmopara viticola epidemics. J. Plant Pathol. 91, 615-627.
179. Rossi, V., Caffi, T. and Gobbin, D. (2013) Contribution of molecular studies to botanical epidemiology and disease modelling: grapevine downy mildew as a case-study. Eur. J. Plant Pathol. 135, 641-654.
180. Rouxel, M., Mestre, P., Comont, G., Lehman, B., Schilder, A. and Delmotte, F. (2013) Phylogenetic and experimental evidence for host-specialized cryptic species in a biotrophic oomycete. New Phytol. 197, 251-263.
181. Roy, S., Poidevin, L., Jiang, T. and Judelson, H.S. (2013) Novel core promoter elements in the oomycete pathogen Phytophthora infestans and their influence on expression detected by genome-wide analysis. BMC Genomics, 14, 106.
182. Saadoun, M. and Allagui, M.B. (2008) Pathogenic variability of Phytophthora nicotianae on pepper in tunisia. J. Plant Pathol. 90, 351-355.
183. Scholthof, K.B.G., Adkins, S., Czosnek, H., Palukaitis, P., Jacquot, E., Hohn, T., Hohn, B., Saunders, K., Candresse, T., Ahlquist, P., Hemenway, C. and Foster, G. (2011) Top 10 plant viruses in molecular plant pathology. Mol. Plant Pathol. 12, 938-954.
184. Schornack, S., Huitema, E., Cano, L.M., Bozkurt, T.O., Oliva, R., van Damme, M., Schwizer, S., Raffaele, S., Chaparro-Garcia, A., Farrer, R., Segretin, M.E., Bos, J., Haas, B.J., Zody, M.C., Nusbaum, C., Win, J., Thines, M. and Kamoun, S. (2009) Ten things to know about oomycete effectors. Mol. Plant Pathol. 10, 795-803.
185. Schornack, S., van Damme, M., Bozkurt, T.O., Cano, L.M., Smoker, M., Thines, M., Gaulin, E., Kamoun, S. and Huitema, E. (2010) Ancient class of translocated oomycete effectors targets the host nucleus. Proc. Natl. Acad. Sci. USA, 107, 17421-17426.
186. Schroeder, K.L., Martin, F.N., de Cock, A.W.A.M., Levesque, C.A., Spies, C.F.J., Okubara, P.A. and Paulitz, T.C. (2013) Molecular detection and quantification of Pythium species: evolving taxonomy, new tools, and challenges. Plant Dis. 97, 4-20.
187. Seidl, M.F., Van den Ackerveken, G., Govers, F. and Snel, B. (2011) A domain-centric analysis of oomycete plant pathogen genomes reveals unique protein organization. Plant Physiol. 155, 628-644.
188. Serrano, M.S., Fernández-Rebollo, P., De Vita, P. and Esperanza Sánchez, M. (2013) Calcium mineral nutrition increases the tolerance of Quercus ilex to Phytophthora root disease affecting oak rangeland ecosystems in Spain. Agroforestry Systems, 87, 173-179.
189. Shaw, D.S. (1983) The perenosporales: a fungal geneticist's nightmare. In: Zoosporic Plant Pathogens (Buczacki, S.T., ed.), pp. 85-121. London: Academic Press.
190. Slusarenko, A.J. and Schlaich, N.L. (2003) Downy mildew of Arabidopsis thaliana caused by Hyaloperonospora parasitica (formerly Peronospora parasitica). Mol. Plant Patol. 4, 159-170.
191. Song, J., Win, J., Tian, M., Schornack, S., Kaschani, F., Ilyas, M., van der Hoorn, R.A.L. and Kamoun, S. (2009) Two effectors secreted by unrelated eukaryotic plant pathogens target the tomato defense protease Rcr3. Proc. Natl. Acad. Sci. USA, 106, 1654-1659.
192. Soylu, S., Keshavarzi, M., Brown, I. and Mansfield, J.W. (2003) Ultrastructural characterisation of interactions between Arabidopsis thaliana and Albugo candida. Physiol. Mol. Plant Pathol. 63, 201-211.
193. Stam, R., Howden, A.J., Delgado-Cerezo, M.T.M.M.M.A., Motion, G.B., Pham, J. and Huitema, E. (2013a) Characterization of cell death inducing Phytophthora capsici CRN effectors suggests diverse activities in the host nucleus. Front. Plant Sci. 4, 387.
194. Stam, R., Jupe, J., Howden, A.J., Morris, J.A., Boevink, P.C., Hedley, P.E. and Huitema, E. (2013b) Identification and characterisation of CRN effectors in Phytophthora capsici shows modularity and functional diversity. PLoS ONE, 8, e59517.
195. Stanghellini, M.E. and Hancock, J.G. (1971) Sporangium of Pythium ultimum as survival structure in soil. Phytopathology, 61, 157-164.
196. Stredansky, M., Conti, E. and Salaris, A. (2000) Production of polyunsaturated fatty acids by Pythium ultimum in solid-state cultivation. Enzyme Microb. Technol. 26, 304-307.
197. Strullu-Derrien, C., Kenrick, P., Rioult, J.P. and Strullu, D.G. (2011) Evidence of parasitic oomycetes (Peronosporomycetes) infecting the stem cortex of the Carboniferous seed fern Lyginopteris oldhamia. Proc. R. Soc. B, 278, 675-680.
198. Sun, W., Jia, Y., O'Neill, N., Feng, B. and Zhang, X. (2008) Genetic diversity in Phytophthora capsici from eastern China. Can. J. Plant Pathol. 30, 414-424.
199. Sun, W.X., Jia, Y.J., Feng, B.Z., O'Neill, N.R., Zhu, X.P., Xie, B.Y. and Zhang, X.G. (2009) Functional analysis of Pcipg2 from the straminopilous plant pathogen Phytophthora capsici. Genesis, 47, 535-544.
200. Pi-ber in potato. Theor. Appl. Genet. 121, 117-125.
201. Taylor, R.J., Pasche, J.S., Gallup, C.A., Shew, H.D. and Gudmestad, N.C. (2008) A foliar blight and tuber rot of potato caused by Phytophthora nicotianae: new occurrences and characterization of isolates. Plant Dis. 92, 492-503.
202. Thines, M. (2014) Phylogeny and evolution of plant pathogenic oomycetes, a global overview. Eur. J. Plant Pathol. 138, 431-447.
203. Thines, M. and Kamoun, S. (2010) Oomycete-plant coevolution: recent advances and future prospects. Curr. Opin. Plant Biol. 13, 427-433.
204. Thines, M. and Spring, O. (2005) A revision of Albugo (chromista, peronosporomycetes). Mycotaxon, 92, 443-458.
205. Thines, M., Choi, Y.J., Kemen, E., Ploch, S., Holub, E.B., Shin, H.D. and Jones, J.D. (2009) A new species of Albugo parasitic to Arabidopsis thaliana reveals new evolutionary patterns in white blister rusts (Albuginaceae). Persoonia, 22, 123-128.
206. Thompson, S.E., Levin, S. and Rodriguez-Iturbe, I. (2014) Rainfall and temperature changes have confounding impacts on Phytophthora cinnamomi occurrence risk in the southwestern USA under climate change scenarios. Global Change Biol. 20, 1299-1312.
207. Tian, M., Huitema, E., Da Cunha, L., Torto-Alalibo, T. and Kamoun, S. (2004) A Kazal-like extracellular serine protease inhibitor from Phytophthora infestans targets the tomato pathogenesis-related protease P69B. J. Biol. Chem. 279, 26370-26377.
208. Töpfer, R., Hausmann, L. and Eibach, R. (2011) Molecular breeding. In: Genetics, Genomics and Breeding of Grapes (Adam-Blondon, A.F., Martinez-Zapater, J.M. and Kole, C., eds), pp. 160-185. Enfield: Science Publishers.
209. Torto, T.A., Li, S., Styer, A., Huitema, E., Testa, A., Gow, N.A., van West, P. and Kamoun, S. (2003) EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen Phytophthora. Genome Res. 13, 1675-1685.
210. Torto-Alalibo, T., Tripathy, S., Smith, B.M., Arredondo, F., Zhou, L., Li, H., Qutob, D., Gijzen, M., Mao, C., Sobral, B.W.S., Waugh, M.E., Mitchell, T.K., Dean, R.A. and Tyler, B.M. (2007) Expressed sequence tags from Phytophthora sojae reveal genes specific to development and infection. Mol. Plant-Microbe Interact. 20, 781-793.
211. Tyler, B.M. (2007) Phytophthora sojae: root rot pathogen of soybean and model oomycete. Mol. Plant Pathol. 8, 1-8.
212. Tyler, B.M., Tripathy, S., Zhang, X., Dehal, P., Jiang, R.H.Y., Aerts, A., Arredondo, F.D., Baxter, L., Bensasson, D., Beynon, J.L., Chapman, J., Damasceno, C.M.B., Dorrance, A.E., Dou, D., Dickerman, A.W., Dubchak, I.L., Garbelotto, M., Gijzen, M., Gordon, S.G., Govers, F., Grünwald, N.J., Huang, W., Ivors, K.L., Jones, R.W., Kamoun, S., Krampis, K., Lamour, K.H., Lee, M.-K., McDonald, W.H., Medina, M., Meijer, H.J.G., Nordberg, E.K., Maclean, D.J., Ospina-Giraldo, M.D., Morris, P.F., Phuntumart, V., Putnam, N.H., Rash, S., Rose, J.K.C., Sakihama, Y., Salamov, A.A., Savidor, A., Scheuring, C.F., Smith, B.M., Sobral, B.W.S., Terry, A., Torto-Alalibo, T.A., Win, J., Xu, Z., Zhang, H., Grigoriev, I.V., Rokhsar, D.S. and Boore, J.L. (2006) Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science, 313, 1261-1266.
213. Uzuhashi, S., Tojo, M. and Kakishima, M. (2010) Phylogeny of the genus Pythium and description of new genera. Mycoscience, 51, 337-365.
214. Vallance, J., Deniel, F., Barbier, G., Guerin-Dubrana, L., Benhamou, N. and Rey, P. (2012) Influence of Pythium oligandrum on the bacterial communities that colonize the nutrient solutions and the rhizosphere of tomato plants. Can. J. Microbiol. 58, 1124-1134.
215. Van der Lee, T., De Witte, I., Drenth, A., Alfonso, C. and Govers, F. (1997) AFLP linkage map of the oomycete Phytophthora infestans. Fungal Genet. Biol. 21, 278-291.
216. Van Poucke, K., Franceschini, S., Webber, J.F., Vercauteren, A., Turner, J.A., McCracken, A.R., Heungens, K. and Brasier, C.M. (2012) Discovery of a fourth evolutionary lineage of Phytophthora ramorum: EU2. Fungal Biol. 116, 1178-1191.
217. Van West, P., Kamoun, S., van 't Klooster, J.W. and Govers, F. (1999) Internuclear gene silencing in Phytophthora infestans. Mol. Cell, 3, 339-348.
218. Vercesi, A., Toffolatti, S.L., Zocchi, G., Guglielmann, R. and Ironi, L. (2010) A new approach to modelling the dynamics of oospore germination in Plasmopara viticola. Eur. J. Plant Pathol. 128, 113-126.
219. Viennot-Bourgin, G. (1949) Les Champignons Parasites des Plantes Cultivées. Paris: Librairies de l'Académie de Médecine.
220. Vleeshouwers, V.G.A., Rietman, H., Krenek, P., Champouret, N., Young, C., Oh, S.-K., Wang, M.C., Bouwmeester, K., Vosman, B., Visser, R.G.F., Jacobsen, E., Govers, F., Kamoun, S. and Van der Vossen, E.A.G. (2008) Effector genomics accelerates discovery and functional profiling of potato disease resistance and Phytophthora infestans avirulence genes. PLoS ONE, 3, e2875.
221. Vleeshouwers, V.G.A., Raffaele, S., Vossen, J., Champouret, N., Oliva, R., Segretin, M.E., Rietman, H., Cano, L., Lokossou, A.A., Kessel, G., Pel, M.A. and Kamoun, S. (2011) Understanding and exploiting late blight resistance in the age of effectors. Annu. Rev. Phytopathol. 49, 507-531.
222. Wang, H.P. and Davis, R.M. (1997) Susceptibility of selected cotton cultivars to seedling disease pathogens and benefits of chemical seed treatments. Plant Dis. 81, 1085-1088.
223. Wang, Q., Han, C., Ferreira, A.O., Yu, X., Ye, W., Tripathy, S., Kale, S.D., Gu, B., Sheng, Y., Sui, Y., Wang, X., Zhang, Z., Cheng, B., Dong, S., Shan, W., Zheng, X., Dou, D., Tyler, B.M. and Wang Y. (2011) Transcriptional programming and functional interactions within the Phytophthora sojae RXLR effector repertoire. Plant Cell, 23, 2064-2086.
224. Weiland, J.J. (2003) Transformation of Pythium aphanidermatum to geneticin resistance. Curr. Genet. 42, 344-352.
225. Werres, S., Marwitz, R., Veld, W., De Cock, A., Bonants, P.J.M., De Weerdt, M., Themann, K., Ilieva, E. and Baayen, R.P. (2001) Phytophthora ramorum sp. nov., a new pathogen on Rhododendron and Viburnum. Mycol. Res. 105, 1155-1165.
226. Whisson, S.C., Boevink, P.C., Moleleki, L., Avrova, A.O., Morales, J.G., Gilroy, E.M., Armstrong, M.R., Grouffaud, S., van West, P., Chapman, S., Hein, I., Toth, I.K., Pritchard, L. and Birch, P.R.J. (2007) A translocation signal for delivery of oomycete effector proteins into host plant cells. Nature, 450, 115-118.
227. Wirthmueller, L., Maqbool, A. and Banfield, M.J. (2013) On the front line: structural insights into plant-pathogen interactions. Nat. Rev. Microbiol. 11, 761-776.
228. Wong, F., Burr, H. and Wilcox, W. (2001) Heterothallism in Plasmopara viticola. Plant Pathol. 50, 427-432.
229. Wrather, J.A. and Koenning, S.R. (2006) Estimates of disease effects on soybean yields in the United States 2003 to 2005. J. Nematol. 38, 173-180.
230. Yoshida, K., Schuenemann, V., Cano, L., Pais, M., Mishra, B., Sharma, R., Kamoun, S., Krause, J., Thines, M., Weigel, D. and Burbano, H. (2013) The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine. eLife, 2, e00731.
231. Yoshida, K., Burbano, H.A., Krause, J., Thines, M., Weigel, D. and Kamoun, S. (2014) Mining herbaria for plant pathogen genomes: back to the future. PLoS Pathog. 10, e1004028.
232. Zadoks, J.C. (2008) The potato murrain on the European continent and the revolutions of 1848. Potato Res. 51, 5-45.
233. Zerillo, M.M., Adhikari, B.N., Hamilton, J.P., Buell, C.R., Levesque, C.A. and Tisserat, N. (2013) Carbohydrate-active enzymes in Pythium and their role in plant cell wall and storage polysaccharide degradation. PLoS ONE, 8, e72572.