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Volumn 9, Issue 2, 2014, Pages

De Novo sequencing, assembly, and analysis of the root transcriptome of Persea americana (Mill.) in response to Phytophthora cinnamomi and flooding

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG; TRANSCRIPTOME; VEGETABLE PROTEIN;

EID: 84895772505     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0086399     Document Type: Article
Times cited : (37)

References (79)
  • 1
    • 33748924018 scopus 로고    scopus 로고
    • Phytophthora cinnamomi
    • Hardham AR (2005) Phytophthora cinnamomi. Mol Plant Pathol 6: 589-604.
    • (2005) Mol Plant Pathol , vol.6 , pp. 589-604
    • Hardham, A.R.1
  • 4
    • 84971088936 scopus 로고
    • Phytophthora cinnamomi: The dynamics of chlamydospore formation and survival
    • Weste G (1983) Phytophthora cinnamomi: the dynamics of chlamydospore formation and survival. J Phytopathol 106: 163-176.
    • (1983) J Phytopathol , vol.106 , pp. 163-176
    • Weste, G.1
  • 5
    • 0345219621 scopus 로고
    • Control of avocado root rot by trunk injection with phosethyl-A1
    • Darvas J, Toerien J, Milne D (1984) Control of avocado root rot by trunk injection with phosethyl-A1. Plant Dis 68: 691.
    • (1984) Plant Dis , vol.68 , pp. 691
    • Darvas, J.1    Toerien, J.2    Milne, D.3
  • 6
    • 52149106671 scopus 로고    scopus 로고
    • Selection for decreased sensitivity to phosphite in Phytophthora cinnamomi with prolonged use of fungicide
    • Dobrowolski M, Shearer B, Colquhoun I, O'Brien P, Hardy G (2008) Selection for decreased sensitivity to phosphite in Phytophthora cinnamomi with prolonged use of fungicide. Plant Pathol 57: 928-936.
    • (2008) Plant Pathol , vol.57 , pp. 928-936
    • Dobrowolski, M.1    Shearer, B.2    Colquhoun, I.3    O'Brien, P.4    Hardy, G.5
  • 10
    • 0030039181 scopus 로고    scopus 로고
    • Anaerobic gene expression and flooding tolerance in maize
    • Sachs MM, Subbaiah CC, Saab IN (1996) Anaerobic gene expression and flooding tolerance in maize. J Exp Bot 47: 1-15.
    • (1996) J Exp Bot , vol.47 , pp. 1-15
    • Sachs, M.M.1    Subbaiah, C.C.2    Saab, I.N.3
  • 12
    • 14644420609 scopus 로고    scopus 로고
    • Antagonistic interaction between abscisic acid and jasmonate-ethylene signaling pathways modulates defense gene expression and disease resistance in arabidopsis
    • DOI 10.1105/tpc.104.025833
    • Anderson JP, Badruzsaufari E, Schenk PM, Manners JM, Desmond OJ, et al. (2004) Antagonistic interaction between abscisic acid and jasmonate-ethylene signaling pathways modulates defense gene expression and disease resistance in Arabidopsis. The Plant Cell Online 16: 3460-3479. (Pubitemid 41096019)
    • (2004) Plant Cell , vol.16 , Issue.12 , pp. 3460-3479
    • Anderson, J.P.1    Badruzsaufari, E.2    Schenk, P.M.3    Manners, J.M.4    Desmond, O.J.5    Ehlert, C.6    Maclean, D.J.7    Ebert, P.R.8    Kazan, K.9
  • 13
    • 46449126200 scopus 로고    scopus 로고
    • Global switches and fine-tuning-ABA modulates plant pathogen defense
    • DOI 10.1094/MPMI-21-6-0709
    • Asselbergh B, De Vleesschauwer D, Höfte M (2008) Global switches and fine-tuning-ABA modulates plant pathogen defense. Mol Plant-Microbe Interact 21: 709-719. (Pubitemid 351929165)
    • (2008) Molecular Plant-Microbe Interactions , vol.21 , Issue.6 , pp. 709-719
    • Asselbergh, B.1    De Vleesschauwer, D.2    Hofte, M.3
  • 14
    • 81555234527 scopus 로고    scopus 로고
    • EST sequencing and gene expression profiling of defence-related genes from Persea americana infected with Phytophthora cinnamomi
    • Mahomed W, van den Berg N (2011) EST sequencing and gene expression profiling of defence-related genes from Persea americana infected with Phytophthora cinnamomi. BMC Plant Biology 11: 167.
    • (2011) BMC Plant Biology , vol.11 , pp. 167
    • Mahomed, W.1    Van Den Berg, N.2
  • 15
    • 83555166108 scopus 로고    scopus 로고
    • Identification of avocado (Persea americana) root proteins induced by infection with the oomycete Phytophthora cinnamomi using a proteomic approach
    • Acosta-Muñiz CH, Escobar-Tovar L, Valdes-Rodríguez S, Fernández-Pavia S, Arias-Saucedo LJ, et al. (2012) Identification of avocado (Persea americana) root proteins induced by infection with the oomycete Phytophthora cinnamomi using a proteomic approach. Physiol Plant 144: 59-72.
    • (2012) Physiol Plant , vol.144 , pp. 59-72
    • Acosta-Muñiz, C.H.1    Escobar-Tovar, L.2    Valdes-Rodríguez, S.3    Fernández-Pavia, S.4    Arias-Saucedo, L.J.5
  • 17
    • 0002892299 scopus 로고
    • Hydrolytic enzyme activities and protein pattern of avocado fruit ripened in air and in low oxygen, with and without ethylene
    • Kanellis AK, Solomos T, Mattoo AK (1989) Hydrolytic enzyme activities and protein pattern of avocado fruit ripened in air and in low oxygen, with and without ethylene. Plant Physiol 90: 259-266.
    • (1989) Plant Physiol , vol.90 , pp. 259-266
    • Kanellis, A.K.1    Solomos, T.2    Mattoo, A.K.3
  • 19
    • 0001175061 scopus 로고
    • Suppression of cellulase and polygalacturonase and induction of alcohol dehydrogenase isoenzymes in avocado fruit mesocarp subjected to low oxygen stress
    • Kanellis AK, Solomos T, Roubelakis-Angelakis KA (1991) Suppression of cellulase and polygalacturonase and induction of alcohol dehydrogenase isoenzymes in avocado fruit mesocarp subjected to low oxygen stress. Plant Physiol 96: 269-274. (Pubitemid 21914002)
    • (1991) Plant Physiology , vol.96 , Issue.1 , pp. 269-274
    • Kanellis, A.K.1    Solomos, T.2    Roubelakis-Angelakis, K.A.3
  • 20
    • 0007964839 scopus 로고
    • Effect of oxygen concentration on respiration of the Fuerte avocado fruit
    • Biale JB (1946) Effect of oxygen concentration on respiration of the Fuerte avocado fruit. Am J Bot: 363-373.
    • (1946) Am J Bot , pp. 363-373
    • Biale, J.B.1
  • 21
    • 0036909761 scopus 로고    scopus 로고
    • Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress
    • DOI 10.1104/pp.008532
    • Kreps JA, Wu Y, Chang HS, Zhu T, Wang X, et al. (2002) Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiol 130: 2129-2141. (Pubitemid 36035209)
    • (2002) Plant Physiology , vol.130 , Issue.4 , pp. 2129-2141
    • Kreps, J.A.1    Wu, Y.2    Chang, H.-S.3    Zhu, T.4    Wang, X.5    Harper, J.F.6
  • 22
    • 0036671216 scopus 로고    scopus 로고
    • Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway
    • DOI 10.1105/tpc.003483
    • Fowler S, Thomashow MF (2002) Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. The Plant Cell Online 14: 1675-1690. (Pubitemid 35002928)
    • (2002) Plant Cell , vol.14 , Issue.8 , pp. 1675-1690
    • Fowler, S.1    Thomashow, M.F.2
  • 23
    • 0034014059 scopus 로고    scopus 로고
    • Genomic approaches to plant stress tolerance
    • DOI 10.1016/S1369-5266(99)00052-7
    • Cushman JC, Bohnert HJ (2000) Genomic approaches to plant stress tolerance. Curr Opin Plant Biol 3: 117-124. (Pubitemid 30157014)
    • (2000) Current Opinion in Plant Biology , vol.3 , Issue.2 , pp. 117-124
    • Cushman, J.C.1    Bohnert, H.J.2
  • 24
    • 9444236902 scopus 로고    scopus 로고
    • Networks of transcription factors with roles in environmental stress response
    • DOI 10.1016/j.tplants.2004.10.007, PII S1360138504002481
    • Chen WJ, Zhu T (2004) Networks of transcription factors with roles in environmental stress response. Trends Plant Sci 9: 591-596. (Pubitemid 39558556)
    • (2004) Trends in Plant Science , vol.9 , Issue.12 , pp. 591-596
    • Chen, W.J.1    Zhu, T.2
  • 26
    • 66749182204 scopus 로고    scopus 로고
    • Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx
    • Meyer E, Aglyamova GV, Wang S, Buchanan-Carter J, Abrego D, et al. (2009) Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx. BMC Genomics 10: 219.
    • (2009) BMC Genomics , vol.10 , pp. 219
    • Meyer, E.1    Aglyamova, G.V.2    Wang, S.3    Buchanan-Carter, J.4    Abrego, D.5
  • 27
    • 84863510246 scopus 로고    scopus 로고
    • De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): Genomic tools for an ecological model system
    • Peterson MP, Whittaker DJ, Ambreth S, Sureshchandra S, Buechlein A, et al. (2012) De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system. BMC Genomics 13: 305.
    • (2012) BMC Genomics , vol.13 , pp. 305
    • Peterson, M.P.1    Whittaker, D.J.2    Ambreth, S.3    Sureshchandra, S.4    Buechlein, A.5
  • 28
    • 84859061827 scopus 로고    scopus 로고
    • Exploring the Switchgrass Transcriptome Using Second-Generation Sequencing Technology
    • Wang Y, Zeng X, Iyer NJ, Bryant DW, Mockler TC, et al. (2012) Exploring the Switchgrass Transcriptome Using Second-Generation Sequencing Technology. PloS one 7: e34225.
    • (2012) PloS One , vol.7
    • Wang, Y.1    Zeng, X.2    Iyer, N.J.3    Bryant, D.W.4    Mockler, T.C.5
  • 29
    • 84872612020 scopus 로고    scopus 로고
    • Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae)
    • de Carvalho JF, Poulain J, Da Silva C, Wincker P, Michon-Coudouel S, et al. (2012) Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae). Heredity 110: 181-193.
    • (2012) Heredity , vol.110 , pp. 181-193
    • De Carvalho, J.F.1    Poulain, J.2    Da Silva, C.3    Wincker, P.4    Michon-Coudouel, S.5
  • 30
    • 13744252346 scopus 로고    scopus 로고
    • Regulation of the Arabidopsis defense transcriptome
    • Eulgem T (2005) Regulation of the Arabidopsis defense transcriptome. Trends Plant Sci 10: 71-78.
    • (2005) Trends Plant Sci , vol.10 , pp. 71-78
    • Eulgem, T.1
  • 31
    • 34250666153 scopus 로고    scopus 로고
    • Sampling the arabidopsis transcriptome with massively parallel pyrosequencing
    • DOI 10.1104/pp.107.096677
    • Weber AP, Weber KL, Carr K, Wilkerson C, Ohlrogge JB (2007) Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol 144: 32-42. (Pubitemid 46941601)
    • (2007) Plant Physiology , vol.144 , Issue.1 , pp. 32-42
    • Weber, A.P.M.1    Weber, K.L.2    Carr, K.3    Wilkerson, C.4    Ohlrogge, J.B.5
  • 32
    • 67649464356 scopus 로고    scopus 로고
    • Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis
    • Hahn DA, Ragland GJ, Shoemaker DD, Denlinger DL (2009) Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis. BMC Genomics 10: 234.
    • (2009) BMC Genomics , vol.10 , pp. 234
    • Hahn, D.A.1    Ragland, G.J.2    Shoemaker, D.D.3    Denlinger, D.L.4
  • 33
    • 60149101108 scopus 로고    scopus 로고
    • Cotton metallothionein GhMT3a, a reactive oxygen species scavenger, increased tolerance against abiotic stress in transgenic tobacco and yeast
    • Xue T, Li X, Zhu W, Wu C, Yang G, et al. (2009) Cotton metallothionein GhMT3a, a reactive oxygen species scavenger, increased tolerance against abiotic stress in transgenic tobacco and yeast. J Exp Bot 60: 339-349.
    • (2009) J Exp Bot , vol.60 , pp. 339-349
    • Xue, T.1    Li, X.2    Zhu, W.3    Wu, C.4    Yang, G.5
  • 35
    • 64749095818 scopus 로고    scopus 로고
    • Oxylipins: Structurally diverse metabolites from fatty acid oxidation
    • Mosblech A, Feussner I, Heilmann I (2009) Oxylipins: Structurally diverse metabolites from fatty acid oxidation. Plant Physiol Biochem 47: 511-517.
    • (2009) Plant Physiol Biochem , vol.47 , pp. 511-517
    • Mosblech, A.1    Feussner, I.2    Heilmann, I.3
  • 36
    • 84870983464 scopus 로고    scopus 로고
    • The Arabidopsis F-box/Kelch-Repeat Protein At2g44130 Is Upregulated in Giant Cells and Promotes Nematode Susceptibility
    • Curtis RHC, Pankaj, Powers SJ, Napier J, Matthes MC (2012) The Arabidopsis F-box/Kelch-Repeat Protein At2g44130 Is Upregulated in Giant Cells and Promotes Nematode Susceptibility. Mol Plant-Microbe Interact 26: 36-43.
    • (2012) Mol Plant-Microbe Interact , vol.26 , pp. 36-43
    • Curtis, R.H.C.1    Pankaj2    Powers, S.J.3    Napier, J.4    Matthes, M.C.5
  • 37
    • 0036016442 scopus 로고    scopus 로고
    • Evidence for autocatalytic cross-linking of hydroxyproline-rich glycoproteins during extracellular matrix assembly in Volvox
    • DOI 10.1105/tpc.000711
    • Ender F, Godl K, Wenzl S, Sumper M (2002) Evidence for Autocatalytic Cross-Linking of Hydroxyproline-Rich Glycoproteins during Extracellular Matrix Assembly in Volvox. The Plant Cell Online 14: 1147-1160. (Pubitemid 34609222)
    • (2002) Plant Cell , vol.14 , Issue.5 , pp. 1147-1160
    • Ender, F.1    Godl, K.2    Wenzl, S.3    Sumper, M.4
  • 38
    • 79955482289 scopus 로고    scopus 로고
    • Expression of a b-1, 3-glucanase from a biocontrol fungus in transgenic pearl millet
    • O'Kennedy M, Crampton BG, Lorito M, Chakauya E, Breese W, et al. (2011) Expression of a b-1, 3-glucanase from a biocontrol fungus in transgenic pearl millet. S Afr J Bot 77: 335-345.
    • (2011) S Afr J Bot , vol.77 , pp. 335-345
    • O'Kennedy, M.1    Crampton, B.G.2    Lorito, M.3    Chakauya, E.4    Breese, W.5
  • 39
    • 79954576644 scopus 로고    scopus 로고
    • Regulation of the molecular response to oxygen limitations in plants
    • Licausi F (2011) Regulation of the molecular response to oxygen limitations in plants. New Phytol 190: 550-555.
    • (2011) New Phytol , vol.190 , pp. 550-555
    • Licausi, F.1
  • 40
    • 0036779396 scopus 로고    scopus 로고
    • Transcription factors in plant defense and stress responses
    • DOI 10.1016/S1369-5266(02)00289-3
    • Singh KB, Foley RC, Oñate-Sánchez L (2002) Transcription factors in plant defense and stress responses. Curr Opin Plant Biol 5: 430-436. (Pubitemid 34961406)
    • (2002) Current Opinion in Plant Biology , vol.5 , Issue.5 , pp. 430-436
    • Singh, K.B.1    Foley, R.C.2    Onate-Sanchez, L.3
  • 41
    • 33646832415 scopus 로고    scopus 로고
    • Genome-wide analysis of the ERF gene family in arabidopsis and rice
    • DOI 10.1104/pp.105.073783
    • Nakano T, Suzuki K, Fujimura T, Shinshi H (2006) Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol 140: 411-432. (Pubitemid 43956266)
    • (2006) Plant Physiology , vol.140 , Issue.2 , pp. 411-432
    • Nakano, T.1    Suzuki, K.2    Fujimura, T.3    Shinshi, H.4
  • 44
    • 0034141963 scopus 로고    scopus 로고
    • NPR1 differentially interacts with members of the TGA/OBF family of transcription factors that bind an element of the PR-1 gene required for induction by salicylic acid
    • Zhou J-M, Trifa Y, Silva H, Pontier D, Lam E, et al. (2000) NPR1 differentially interacts with members of the TGA/OBF family of transcription factors that bind an element of the PR-1 gene required for induction by salicylic acid. Mol Plant-Microbe Interact 13: 191-202. (Pubitemid 30061602)
    • (2000) Molecular Plant-Microbe Interactions , vol.13 , Issue.2 , pp. 191-202
    • Zhou, J.-Ma.1    Trifa, Y.2    Silva, H.3    Pontier, D.4    Lam, E.5    Shah, J.6    Klessig, D.F.7
  • 45
    • 79953067376 scopus 로고    scopus 로고
    • Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability
    • Licausi F, Weits DA, Pant BD, Scheible WR, Geigenberger P, et al. (2011) Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability. New Phytol 190: 442-456.
    • (2011) New Phytol , vol.190 , pp. 442-456
    • Licausi, F.1    Weits, D.A.2    Pant, B.D.3    Scheible, W.R.4    Geigenberger, P.5
  • 46
    • 84865052748 scopus 로고    scopus 로고
    • De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)
    • Zhang X-M, Zhao L, Larson-Rabin Z, Li D-Z, Guo Z-H (2012) De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae). PloS one 7: e42082.
    • (2012) PloS One , vol.7
    • Zhang, X.-M.1    Zhao, L.2    Larson-Rabin, Z.3    Li, D.-Z.4    Guo, Z.-H.5
  • 47
    • 68849104546 scopus 로고    scopus 로고
    • VERNALIZATION INSENSITIVE 3 (VIN3) is required for the response of Arabidopsis thaliana seedlings exposed to low oxygen conditions
    • Bond DM, Wilson IW, Dennis ES, Pogson BJ, Jean Finnegan E (2009) VERNALIZATION INSENSITIVE 3 (VIN3) is required for the response of Arabidopsis thaliana seedlings exposed to low oxygen conditions. The Plant Journal 59: 576-587.
    • (2009) The Plant Journal , vol.59 , pp. 576-587
    • Bond, D.M.1    Wilson, I.W.2    Dennis, E.S.3    Pogson, B.J.4    Jean Finnegan, E.5
  • 48
    • 0034903865 scopus 로고    scopus 로고
    • Differential induction of two potato genes, Stprx2 and StNAC, in response to infection by Phytophthora infestans and to wounding
    • DOI 10.1023/A:1010639225091
    • Collinge M, Boller T (2001) Differential induction of two potato genes, Stprx2 and StNAC, in response to infection by Phytophthora infestans and to wounding. Plant Mol Biol 46: 521-529. (Pubitemid 32739402)
    • (2001) Plant Molecular Biology , vol.46 , Issue.5 , pp. 521-529
    • Collinge, M.1    Boller, T.2
  • 49
    • 79955430181 scopus 로고    scopus 로고
    • Resistance to hemibiotrophic F. Graminearum infection is associated with coordinated and ordered expression of diverse defense signaling pathways
    • Ding L, Xu H, Yi H, Yang L, Kong Z, et al. (2011) Resistance to hemibiotrophic F. graminearum infection is associated with coordinated and ordered expression of diverse defense signaling pathways. PloS one 6: e19008.
    • (2011) PloS One , vol.6
    • Ding, L.1    Xu, H.2    Yi, H.3    Yang, L.4    Kong, Z.5
  • 51
    • 36249031434 scopus 로고    scopus 로고
    • β-1,3-Glucanases: Plasmodesmal gate keepers for intercellular communication
    • Levy A, Guenoune-Gelbart D, Epel BL (2007) β-1,3-Glucanases: plasmodesmal gate keepers for intercellular communication. Plant Signaling & Behavior 2: 404-407. (Pubitemid 350124674)
    • (2007) Plant Signaling and Behavior , vol.2 , Issue.5 , pp. 404-407
    • Levy, A.1    Guenoune-Gelbart, D.2    Epel, B.L.3
  • 52
    • 0028254268 scopus 로고
    • The physiology and molecular biology of plant 1,3-β-D-glucanases and 1,3;1,4-β-D-glucanases
    • Simmons CR (1994) The physiology and molecular biology of plant 1,3-β-D-glucanases and 1,3;1,4-β-D-glucanases. Critical Reviews in Plant Sciences 13: 325-387.
    • (1994) Critical Reviews in Plant Sciences , vol.13 , pp. 325-387
    • Simmons, C.R.1
  • 53
    • 28544434015 scopus 로고    scopus 로고
    • Induction and differential expression of β-1,3-glucanase mRNAs in tolerant and susceptible Hevea clones in response to infection by Phytophthora meadii
    • Thanseem I, Joseph A, Thulaseedharan A (2005) Induction and differential expression of β-1,3-glucanase mRNAs in tolerant and susceptible Hevea clones in response to infection by Phytophthora meadii. Tree Physiology 25: 1361-1368. (Pubitemid 41741881)
    • (2005) Tree Physiology , vol.25 , Issue.11 , pp. 1361-1368
    • Thanseem, I.1    Joseph, A.2    Thulaseedharan, A.3
  • 54
    • 0001699831 scopus 로고
    • Biosynthesis of jasmonic acid by several plant species
    • Vick BA, Zimmerman DC (1984) Biosynthesis of jasmonic acid by several plant species. Plant Physiol 75: 458-461.
    • (1984) Plant Physiol , vol.75 , pp. 458-461
    • Vick, B.A.1    Zimmerman, D.C.2
  • 55
    • 0036274678 scopus 로고    scopus 로고
    • Ethylene biosynthesis and signaling networks
    • Wang KL-C, Li H, Ecker JR (2002) Ethylene biosynthesis and signaling networks. The Plant Cell Online 14: S131-S151. (Pubitemid 34609235)
    • (2002) Plant Cell , vol.14 , Issue.SUPPL.
    • Wang, K.L.-C.1    Li, H.2    Ecker, J.R.3
  • 56
    • 59349116471 scopus 로고    scopus 로고
    • Elucidation of defence responses and signalling pathways induced in Arabidopsis thaliana following challenge with Phytophthora cinnamomi
    • Rookes JE, Wright ML, Cahill DM (2008) Elucidation of defence responses and signalling pathways induced in Arabidopsis thaliana following challenge with Phytophthora cinnamomi. Physiol Mol Plant Pathol 72: 151-161.
    • (2008) Physiol Mol Plant Pathol , vol.72 , pp. 151-161
    • Rookes, J.E.1    Wright, M.L.2    Cahill, D.M.3
  • 57
    • 76549093442 scopus 로고    scopus 로고
    • Phenylpropanoid biosynthesis
    • Vogt T (2010) Phenylpropanoid biosynthesis. Molecular Plant 3: 2-20.
    • (2010) Molecular Plant , vol.3 , pp. 2-20
    • Vogt, T.1
  • 58
    • 0031715799 scopus 로고    scopus 로고
    • Current concepts of active defense in plants
    • Hutcheson SW (1998) Current concepts of active defense in plants. Annu Rev Phytopathol 36: 59-90.
    • (1998) Annu Rev Phytopathol , vol.36 , pp. 59-90
    • Hutcheson, S.W.1
  • 59
    • 33744949787 scopus 로고    scopus 로고
    • The role of salicylic acid and jasmonic acid in pathogen defence
    • DOI 10.1055/s-2006-924025
    • Halim V, Vess A, Scheel D, Rosahl S (2006) The role of salicylic acid and jasmonic acid in pathogen defence. Plant Biol 8: 307-313. (Pubitemid 43854059)
    • (2006) Plant Biology , vol.8 , Issue.3 , pp. 307-313
    • Halim, V.A.1    Vess, A.2    Scheel, D.3    Rosahl, S.4
  • 60
    • 0034092797 scopus 로고    scopus 로고
    • Tobacco TGA factors differ with respect to interaction with NPR1, activation potential and DNA-binding properties
    • DOI 10.1023/A:1006319113205
    • Niggeweg R, Thurow C, Weigel R, Pfitzner U, Gatz C (2000) Tobacco TGA factors differ with respect to interaction with NPR1, activation potential and DNA-binding properties. Plant Mol Biol 42: 775-788. (Pubitemid 30244412)
    • (2000) Plant Molecular Biology , vol.42 , Issue.5 , pp. 775-788
    • Niggeweg, R.1    Thurow, C.2    Weigel, R.3    Pfitzner, U.4    Gatz, C.5
  • 62
    • 1642564016 scopus 로고    scopus 로고
    • CDPK-mediated signalling pathways: Specificity and cross-talk
    • DOI 10.1093/jxb/erh008, Crosstalk in Plant Signal Transduction
    • Ludwig AA, Romeis T, Jones JD (2004) CDPK-mediated signalling pathways: specificity and cross-talk. J Exp Bot 55: 181-188. (Pubitemid 38119160)
    • (2004) Journal of Experimental Botany , vol.55 , Issue.395 , pp. 181-188
    • Ludwig, A.A.1    Romeis, T.2    Jones, J.D.G.3
  • 64
    • 0242676042 scopus 로고    scopus 로고
    • Active defence responses associated with non-host resistance of Arabidopsis thaliana to the oomycete pathogen Phytophthora infestans
    • DOI 10.1046/j.1364-3703.2003.00195.x
    • Huitema E, Vleeshouwers VG, Francis DM, Kamoun S (2003) Active defence responses associated with non-host resistance of Arabidopsis thaliana to the oomycete pathogen Phytophthora infestans. Mol Plant Pathol 4: 487-500. (Pubitemid 37417866)
    • (2003) Molecular Plant Pathology , vol.4 , Issue.6 , pp. 487-500
    • Huitema, E.1    Vleeshouwers, V.G.A.A.2    Francis, D.M.3    Kamoun, S.4
  • 65
    • 0037254577 scopus 로고    scopus 로고
    • Ecotypic variation in the response of Arabidopsis thaliana to Phytophthora cinnamomi
    • DOI 10.1071/AP02064
    • Robinson LH, Cahill DM (2003) Ecotypic variation in the response of Arabidopsis thaliana to Phytophthora cinnamomi. Australasian plant pathology 32: 53-64. (Pubitemid 36429798)
    • (2003) Australasian Plant Pathology , vol.32 , Issue.1 , pp. 53-64
    • Robinson, L.H.1    Cahill, D.M.2
  • 67
    • 67449161515 scopus 로고    scopus 로고
    • Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family
    • Porter BW, Paidi M, Ming R, Alam M, Nishijima WT, et al. (2009) Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family. Mol Genet Genomics 281: 609-626.
    • (2009) Mol Genet Genomics , vol.281 , pp. 609-626
    • Porter, B.W.1    Paidi, M.2    Ming, R.3    Alam, M.4    Nishijima, W.T.5
  • 68
    • 0033197511 scopus 로고    scopus 로고
    • A transmembrane hybrid-type histidine kinase in Arabidopsis functions as an osmosensor
    • Urao T, Yakubov B, Satoh R, Yamaguchi-Shinozaki K, Seki M, et al. (1999) A transmembrane hybrid-type histidine kinase in Arabidopsis functions as an osmosensor. The Plant Cell Online 11: 1743-1754.
    • (1999) The Plant Cell Online , vol.11 , pp. 1743-1754
    • Urao, T.1    Yakubov, B.2    Satoh, R.3    Yamaguchi-Shinozaki, K.4    Seki, M.5
  • 69
    • 0028384684 scopus 로고
    • A cereal haemoglobin gene is expressed in seed and root tissues under anaerobic conditions
    • Taylor ER, Nie XZ, MacGregor AW, Hill RD (1994) A cereal haemoglobin gene is expressed in seed and root tissues under anaerobic conditions. Plant Mol Biol 24: 853-862. (Pubitemid 2089297)
    • (1994) Plant Molecular Biology , vol.24 , Issue.6 , pp. 853-862
    • Taylor, E.R.1    Nie, X.Z.2    MacGregor, A.W.3    Hill, R.D.4
  • 70
    • 0031397761 scopus 로고    scopus 로고
    • Mitochondrial respiration and hemoglobin gene expression in barley aleurone tissue
    • Nie X, Hill RD (1997) Mitochondrial respiration and hemoglobin gene expression in barley aleurone tissue. Plant Physiol 114: 835-840. (Pubitemid 28382330)
    • (1997) Plant Physiology , vol.114 , Issue.3 , pp. 835-840
    • Nie, X.1    Hill, R.D.2
  • 71
    • 30344449458 scopus 로고    scopus 로고
    • 2 stress response in plants
    • DOI 10.1080/07352680500365232, PII G5500865VR3N8557
    • Agarwal S, Grover A (2006) Molecular biology, biotechnology and genomics of flooding-associated low O2 stress response in plants. Crit Rev Plant Sci 25: 1-21. (Pubitemid 43068152)
    • (2006) Critical Reviews in Plant Sciences , vol.25 , Issue.1 , pp. 1-21
    • Agarwal, S.1    Grover, A.2
  • 72
    • 33749038640 scopus 로고    scopus 로고
    • Characterization of alanine aminotransferase (AlaAT) multigene family and hypoxic response in young seedlings of the model legume Medicago truncatula
    • DOI 10.1093/jxb/erl069
    • Ricoult C, Echeverria LO, Cliquet J-B, Limami AM (2006) Characterization of alanine aminotransferase (AlaAT) multigene family and hypoxic response in young seedlings of the model legume Medicago truncatula . J Exp Bot 57: 3079-3089. (Pubitemid 44453520)
    • (2006) Journal of Experimental Botany , vol.57 , Issue.12 , pp. 3079-3089
    • Ricoult, C.1    Echeverria, L.O.2    Cliquet, J.-B.3    Limami, A.M.4
  • 73
    • 0347662316 scopus 로고    scopus 로고
    • Rapid detection of Phytophthora cinnamomi using PCR with primers derived from the Lpv putative storage protein genes
    • DOI 10.1111/j.1365-3059.2003.00935.x
    • Kong P, Hong C, Richardson P (2003) Rapid detection of Phytophthora cinnamomi using PCR with primers derived from the Lpv putative storage protein genes. Plant Pathol 52: 681-693. (Pubitemid 38051321)
    • (2003) Plant Pathology , vol.52 , Issue.6 , pp. 681-693
    • Kong, P.1    Hong, C.X.2    Richardson, P.A.3
  • 74
    • 51249169259 scopus 로고
    • A simple and efficient method for isolating RNA from pine trees
    • Chang S, Puryear J, Cairney J (1993) A simple and efficient method for isolating RNA from pine trees. Plant Molecular Biology Reporter 11: 113-116.
    • (1993) Plant Molecular Biology Reporter , vol.11 , pp. 113-116
    • Chang, S.1    Puryear, J.2    Cairney, J.3
  • 75
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • Kent WJ (2002) BLAT-the BLAST-like alignment tool. Genome Res 12: 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 76
    • 77953176036 scopus 로고    scopus 로고
    • A scaling normalization method for differential expression analysis of RNA-seq data
    • Robinson MD, Oshlack A (2010) A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol 11: R25.
    • (2010) Genome Biol , vol.11
    • Robinson, M.D.1    Oshlack, A.2
  • 77
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K, Misawa K, Kuma Ki, Miyata T (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30: 3059-3066. (Pubitemid 34851225)
    • (2002) Nucleic Acids Research , vol.30 , Issue.14 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.-I.3    Miyata, T.4
  • 78
    • 70349970273 scopus 로고    scopus 로고
    • A comprehensive analysis of the soybean genes and proteins expressed under flooding stress using transcriptome and proteome techniques
    • Komatsu S, Yamamoto R, Nanjo Y, Mikami Y, Yunokawa H, et al. (2009) A comprehensive analysis of the soybean genes and proteins expressed under flooding stress using transcriptome and proteome techniques. Journal of Proteome Research 8: 4766-4778.
    • (2009) Journal of Proteome Research , vol.8 , pp. 4766-4778
    • Komatsu, S.1    Yamamoto, R.2    Nanjo, Y.3    Mikami, Y.4    Yunokawa, H.5
  • 79
    • 77955828942 scopus 로고    scopus 로고
    • Identification of transcriptome induced in roots of maize seedlings at the late stage of waterlogging
    • Zou X, Jiang Y, Liu L, Zhang Z, Zheng Y (2010) Identification of transcriptome induced in roots of maize seedlings at the late stage of waterlogging. BMC Plant Biol 10: 189.
    • (2010) BMC Plant Biol , vol.10 , pp. 189
    • Zou, X.1    Jiang, Y.2    Liu, L.3    Zhang, Z.4    Zheng, Y.5


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