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Volumn 10, Issue 4, 2014, Pages

Mining Herbaria for Plant Pathogen Genomes: Back to the Future

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MITOCHONDRIAL DNA;

EID: 84901374434     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1004028     Document Type: Article
Times cited : (64)

References (41)
  • 1
    • 0004086053 scopus 로고
    • New York: Dover Publications Inc
    • Large EC (1940) The Advance of Fungi. New York: Dover Publications Inc. 488 p.
    • (1940) The Advance of Fungi , pp. 488
    • Large, E.C.1
  • 2
    • 0006810859 scopus 로고
    • Explication physique d 'une maladie qui fait périr plusieurs plantes dans le Gatinois et particulièrement le safran
    • Duhamel HL, (1728) Explication physique d 'une maladie qui fait périr plusieurs plantes dans le Gatinois et particulièrement le safran. Mem Acad Roy Sci pp. 100-112.
    • (1728) Mem Acad Roy Sci , pp. 100-112
    • Duhamel, H.L.1
  • 3
    • 0002996027 scopus 로고
    • Recherches sur le développement de quelques champignons parasites
    • de Bary A, (1863) Recherches sur le développement de quelques champignons parasites. Ann Sci Nat Bot Sér 4, 20: 5-148.
    • (1863) Ann Sci Nat Bot Sér , vol.4 , Issue.20 , pp. 5-148
    • de Bary, A.1
  • 4
    • 0000502273 scopus 로고
    • Emergence of potato blight, 1843-46
    • Bourke PMA, (1964) Emergence of potato blight, 1843-46. Nature 203: 805-808.
    • (1964) Nature , vol.203 , pp. 805-808
    • Bourke, P.M.A.1
  • 5
    • 0004226533 scopus 로고
    • History and importance of downy mildews
    • In: Spencer DM, editor, London, United Kingdom: Academic Press
    • Viennot-Bourgin G (1981) History and importance of downy mildews. In: Spencer DM, editor. The Downy Mildews. London, United Kingdom: Academic Press. pp. 1-14.
    • (1981) The Downy Mildews , pp. 1-14
    • Viennot-Bourgin, G.1
  • 6
    • 0008550678 scopus 로고
    • James E. Teschemacher and the cause and management of potato blight in the United States
    • Peterson PD, (1992) James E. Teschemacher and the cause and management of potato blight in the United States. Plant Dis 76: 754-756.
    • (1992) Plant Dis , vol.76 , pp. 754-756
    • Peterson, P.D.1
  • 7
    • 0031758195 scopus 로고    scopus 로고
    • The importance of archival and herbarium materials in understanding the role of oospores in late blight epidemics of the past
    • Ristaino JB, (1998) The importance of archival and herbarium materials in understanding the role of oospores in late blight epidemics of the past. Phytopathology 88: 1120-1130.
    • (1998) Phytopathology , vol.88 , pp. 1120-1130
    • Ristaino, J.B.1
  • 8
    • 0035822055 scopus 로고    scopus 로고
    • PCR amplification of the Irish potato famine pathogen from historic specimens
    • Ristaino JB, Groves CT, Parra GR, (2001) PCR amplification of the Irish potato famine pathogen from historic specimens. Nature 411: 695-697.
    • (2001) Nature , vol.411 , pp. 695-697
    • Ristaino, J.B.1    Groves, C.T.2    Parra, G.R.3
  • 9
    • 2942588943 scopus 로고    scopus 로고
    • Identity of the mtDNA haplotype(s) of Phytophthora infestans in historical specimens from the Irish potato famine
    • May KJ, Ristaino JB, (2004) Identity of the mtDNA haplotype(s) of Phytophthora infestans in historical specimens from the Irish potato famine. Mycol Res 108: 471-479.
    • (2004) Mycol Res , vol.108 , pp. 471-479
    • May, K.J.1    Ristaino, J.B.2
  • 10
    • 84879037102 scopus 로고    scopus 로고
    • The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine
    • Yoshida K, Schuenemann V, Cano C, Pais P, Mishra B, et al. (2013) The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine. eLife 2: e00731.
    • (2013) ELife , vol.2
    • Yoshida, K.1    Schuenemann, V.2    Cano, C.3    Pais, P.4    Mishra, B.5
  • 11
    • 84892942971 scopus 로고    scopus 로고
    • Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
    • Martin MD, Cappellini E, Samaniego JA, Zepeda ML, Campos PF, et al. (2013) Reconstructing genome evolution in historic samples of the Irish potato famine pathogen. Nat Commun 4: 2172.
    • (2013) Nat Commun , vol.4 , pp. 2172
    • Martin, M.D.1    Cappellini, E.2    Samaniego, J.A.3    Zepeda, M.L.4    Campos, P.F.5
  • 13
    • 0000042068 scopus 로고
    • Amplification and sequencing of DNA from fungal herbarium specimens
    • Bruns TD, Fogel R, Taylor JW, (1990) Amplification and sequencing of DNA from fungal herbarium specimens. Mycologia 82: 175-184.
    • (1990) Mycologia , vol.82 , pp. 175-184
    • Bruns, T.D.1    Fogel, R.2    Taylor, J.W.3
  • 14
    • 33751077282 scopus 로고    scopus 로고
    • Analysis of one million base pairs of Neanderthal DNA
    • Green RE, Krause J, Ptak SE, Briggs AW, Ronan MT, et al. (2006) Analysis of one million base pairs of Neanderthal DNA. Nature 444: 330-336.
    • (2006) Nature , vol.444 , pp. 330-336
    • Green, R.E.1    Krause, J.2    Ptak, S.E.3    Briggs, A.W.4    Ronan, M.T.5
  • 15
    • 31144442151 scopus 로고    scopus 로고
    • Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA
    • Poinar HN, Schwarz C, Qi J, Shapiro B, Macphee RD, et al. (2006) Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA. Science 311: 392-394.
    • (2006) Science , vol.311 , pp. 392-394
    • Poinar, H.N.1    Schwarz, C.2    Qi, J.3    Shapiro, B.4    Macphee, R.D.5
  • 17
    • 78650850475 scopus 로고    scopus 로고
    • Genetic history of an archaic hominin group from Denisova Cave in Siberia
    • Reich D, Green RE, Kircher M, Krause J, Patterson N, et al. (2010) Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature 468: 1053-1060.
    • (2010) Nature , vol.468 , pp. 1053-1060
    • Reich, D.1    Green, R.E.2    Kircher, M.3    Krause, J.4    Patterson, N.5
  • 18
    • 84867331947 scopus 로고    scopus 로고
    • A high-coverage genome sequence from an archaic Denisovan individual
    • Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, et al. (2012) A high-coverage genome sequence from an archaic Denisovan individual. Science 338: 222-226.
    • (2012) Science , vol.338 , pp. 222-226
    • Meyer, M.1    Kircher, M.2    Gansauge, M.T.3    Li, H.4    Racimo, F.5
  • 19
    • 80053137140 scopus 로고    scopus 로고
    • Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death
    • Schuenemann VJ, Bos K, DeWitte S, Schmedes S, Jamieson J, et al. (2011) Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death. Proc Natl Acad Sci USA 108: E746-E752.
    • (2011) Proc Natl Acad Sci USA , vol.108
    • Schuenemann, V.J.1    Bos, K.2    DeWitte, S.3    Schmedes, S.4    Jamieson, J.5
  • 22
    • 77950820147 scopus 로고    scopus 로고
    • The complete mitochondrial DNA genome of an unknown hominin from southern Siberia
    • Krause J, Fu Q, Good JM, Viola B, Shunkov MV, et al. (2010) The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Nature 464: 894-897.
    • (2010) Nature , vol.464 , pp. 894-897
    • Krause, J.1    Fu, Q.2    Good, J.M.3    Viola, B.4    Shunkov, M.V.5
  • 23
    • 84878902204 scopus 로고    scopus 로고
    • On the trail of ancient killers
    • Gibbons A, (2013) On the trail of ancient killers. Science 340: 1278-1282.
    • (2013) Science , vol.340 , pp. 1278-1282
    • Gibbons, A.1
  • 24
    • 0036021407 scopus 로고    scopus 로고
    • Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
    • Drummond AJ, Nicholls GK, Rodrigo AG, Solomon W, (2002) Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161: 1307-1320.
    • (2002) Genetics , vol.161 , pp. 1307-1320
    • Drummond, A.J.1    Nicholls, G.K.2    Rodrigo, A.G.3    Solomon, W.4
  • 25
    • 0034044313 scopus 로고    scopus 로고
    • Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies
    • Rambaut A, (2000) Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies. Bioinformatics 16: 395-399.
    • (2000) Bioinformatics , vol.16 , pp. 395-399
    • Rambaut, A.1
  • 27
    • 11144348955 scopus 로고    scopus 로고
    • The spores of Phytophthora: weapons of the plant destroyer
    • Judelson HS, Blanco FA, (2005) The spores of Phytophthora: weapons of the plant destroyer. Nat Rev Microbiol 3: 47-58.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 47-58
    • Judelson, H.S.1    Blanco, F.A.2
  • 28
    • 84868116496 scopus 로고    scopus 로고
    • Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen
    • Cooke DE, Cano LM, Raffaele S, Bain RA, Cooke LR, et al. (2012) Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathog 8: e1002940.
    • (2012) PLoS Pathog , vol.8
    • Cooke, D.E.1    Cano, L.M.2    Raffaele, S.3    Bain, R.A.4    Cooke, L.R.5
  • 30
    • 84885318121 scopus 로고    scopus 로고
    • Genotypic diversity and migration patterns of Phytophthora infestans in the Nordic countries
    • Sjöholm L, Andersson Br, Högberg N, Widmark A-K, Yuen J, (2013) Genotypic diversity and migration patterns of Phytophthora infestans in the Nordic countries. Fungal Biol 117: 722-730.
    • (2013) Fungal Biol , vol.117 , pp. 722-730
    • Sjöholm, L.1    Andersson, B.2    Högberg, N.3    Widmark, A.-K.4    Yuen, J.5
  • 31
    • 84867012320 scopus 로고    scopus 로고
    • Population genetics and population diversity of Phytophthora infestans
    • In: Lamour K, Kamoun S, editors, Hoboken (New Jersey): John Wiley & Sons, Inc
    • Fry WE, Grünwald NJ, Cooke DEL, McLeod A, Forbes GA, et al. (2008) Population genetics and population diversity of Phytophthora infestans. In: Lamour K, Kamoun S, editors. Oomycete Genetics and Genomics. Hoboken (New Jersey): John Wiley & Sons, Inc. pp. 139-164.
    • (2008) Oomycete Genetics and Genomics , pp. 139-164
    • Fry, W.E.1    Grünwald, N.J.2    Cooke, D.E.L.3    McLeod, A.4    Forbes, G.A.5
  • 32
    • 84870779706 scopus 로고    scopus 로고
    • Emergence of 13_A2 Blue Lineage of Phytophthora infestans was Responsible for Severe Outbreaks of Late Blight on Tomato in South-West India
    • Chowdappa P, Kumar NBJ, Madhura S, Kumar MSP, Myers KL, et al. (2013) Emergence of 13_A2 Blue Lineage of Phytophthora infestans was Responsible for Severe Outbreaks of Late Blight on Tomato in South-West India. J Phytopathol 161: 49-58.
    • (2013) J Phytopathol , vol.161 , pp. 49-58
    • Chowdappa, P.1    Kumar, N.B.J.2    Madhura, S.3    Kumar, M.S.P.4    Myers, K.L.5
  • 33
    • 84880284880 scopus 로고    scopus 로고
    • Population structure of Phytophthora infestans in China - geographic clusters and presence of the EU genotype Blue_13
    • Li Y, van der Lee T, Zhu JH, Jin GH, Lan CZ, et al. (2013) Population structure of Phytophthora infestans in China - geographic clusters and presence of the EU genotype Blue_13. Plant Pathol 62: 932-942.
    • (2013) Plant Pathol , vol.62 , pp. 932-942
    • Li, Y.1    van der Lee, T.2    Zhu, J.H.3    Jin, G.H.4    Lan, C.Z.5
  • 34
    • 0028006618 scopus 로고
    • Panglobal distribution of a single clonal lineage of the Irish potato famine fungus
    • Goodwin SB, Cohen BA, Fry WE, (1994) Panglobal distribution of a single clonal lineage of the Irish potato famine fungus. Proc Natl Acad Sci USA 91: 11591-11595.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11591-11595
    • Goodwin, S.B.1    Cohen, B.A.2    Fry, W.E.3
  • 35
    • 27644473231 scopus 로고    scopus 로고
    • After the famine: Plant pathology, Phytophthora infestans, and the late blight of potatoes, 1845-1960
    • Turner RS, (2005) After the famine: Plant pathology, Phytophthora infestans, and the late blight of potatoes, 1845-1960. Hist Stud Phys Biol Sci 35: 341-370.
    • (2005) Hist Stud Phys Biol Sci , vol.35 , pp. 341-370
    • Turner, R.S.1
  • 38
    • 84879302681 scopus 로고    scopus 로고
    • The early days of late blight
    • Birch PRJ, Cooke DE, (2013) The early days of late blight. eLife 2: e00954.
    • (2013) ELife , vol.2
    • Birch, P.R.J.1    Cooke, D.E.2
  • 40
    • 84891421041 scopus 로고    scopus 로고
    • A call for renewed and pan-European strategic effort on the taxonomy of rust fungi (Uredinales)
    • Helfer S, Berndt R, Denchev CM, Moricca S, Scheuer C, et al. (2011) A call for renewed and pan-European strategic effort on the taxonomy of rust fungi (Uredinales). Mycol Balc 8: 78-80.
    • (2011) Mycol Balc , vol.8 , pp. 78-80
    • Helfer, S.1    Berndt, R.2    Denchev, C.M.3    Moricca, S.4    Scheuer, C.5
  • 41
    • 80051740988 scopus 로고    scopus 로고
    • The emergence of Ug99 races of the stem rust fungus is a threat to world wheat production
    • Singh RP, Hodson DP, Huerta-Espino J, Jin Y, Bhavani S, et al. (2011) The emergence of Ug99 races of the stem rust fungus is a threat to world wheat production. Annu Rev Phytopathol 49: 465-481.
    • (2011) Annu Rev Phytopathol , vol.49 , pp. 465-481
    • Singh, R.P.1    Hodson, D.P.2    Huerta-Espino, J.3    Jin, Y.4    Bhavani, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.