Comparative analysis of expressed sequences in Phytophthora sojae

Plant Physiology

Volumn 123, Issue 1, 2000, Pages 243-253

  Qutob, Dinah ^a,b   Hraber, Peter T ^c   Sobral, Bruno W S ^c   Gijzen, Mark ^a  

^a AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^b UNIVERSITY OF WESTERN ONTARIO   (Canada)

^c NATIONAL CENTER FOR GENOME RESOURCES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CDNA LIBRARY; EXPRESSED SEQUENCE TAG; GENETIC TRANSCRIPTION; INOCULATION; MESSENGER RNA; PHYTOPHTHORA INFESTANS; ROOT ROT; STEM ROT;

GLYCINE MAX; PHYTOPHTHORA SOJAE;

EID: 0034071817     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.123.1.243     Document Type: Article

References (45)

1. Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF, Kerlavage AR, McCombie WR, Venter JC (1991) Complementary DNA sequencing: expressed sequence tags and human genome project. Science 252: 1651-1656
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410
3. Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
4. Anderson TR, Buzzell RI (1992) Diversity and frequency of races of Phytophthora megasperma f. sp. glycinea in soybean fields in Essex County, Ontario, 1980-1989. Plant Dis 76: 587-589
5. Dellaporta S, Woods H, Hicks J (1983) A plant DNA mini-preparation: version II. Plant Mol Biol Rep 1:19-21
6. Doupnik B (1993) Soybean production and disease loss estimates for north central United States from 1989 to 1991. Plant Dis 77: 1170-1171
7. Erwin DC, Ribeiro OK (1996) Phytophthora Diseases Worldwide. APS Press, St. Paul
8. Förster H, Coffey MD, Elwood H, Sogin ML (1990) Sequence analysis of the small subunit ribosomal RNAs of three zoosporic fungi and implications for fungal evolution. Mycologia 82: 306-312
9. Förster H, Tyler BM, Coffey MD (1994) Phytophthora sojae races have arisen by clonal evolution and by rare out-crosses. Mol Plant-Microbe Interact 7: 780-791
10. Gamier A, Berredjem A, Botton B (1997) Purification and characterization of the NAD-dependent glutamate dehydrogenase in the ectomycorrhizal fungus Laccaria bicolor (Maire) Orton. Fungal Genet Biol 22: 168-176
11. Gijzen M (1997) A deletion mutation at the ep locus causes low seed coat peroxidase activity in soybean. Plant J 12: 991-998
12. Gijzen M, Förster H, Coffey MD, Tyler B (1996a) Cosegregation of Avr4 and Avr6 in Phytophthora sojae. Can J Bot 74: 800-802
13. Gijzen M, MacGregor T, Bhattacharyya M, Buzzell R (1996b) Temperature induced susceptibility to Phytophthora sojae in soybean isolines carrying different Rps genes. Physiol Mol Plant Pathol 48: 209-215
14. Gunderson JH, Elwood H, Ingold A, Kindle K, Sogin ML (1987) Phylogenic relationships between chlorophytes, chrysophytes, and oomycetes. Proc Natl Acad Sci USA 84: 5823-5827
15. Hardham AR, Gubler F, Duniec J (1991) Ultrastructural and immunological studies of zoospores of Phytophthora. In JA Lucas, RC Shattock, DS Shaw, LR Cooke, eds, Phytophthora. Cambridge University Press, Cambridge, UK, pp 50-59
16. Hildebrand AA (1959) A root and stalk rot of soybeans caused by Phytophthora megasperma Drechsler var. sojae var. nov. Can J Bot 37: 927-957
17. Ho HH, Zachariah K, Hickman CJ (1967) The ultrastructure of zoospores of Phytophthora megasperma var. sojae. Can J Bot 46: 37-41
18. Hoitink HA, Schmitthenner AF (1969) Rhododendron wilt caused by Phytophthora citricola. Phytopathology 59: 708-709
19. Judelson HS (1997) The genetics and biology of Phytophthora infestans: modern approaches to a historical challenge. Fungal Genet Biol 22: 65-76
20. Judelson HS, Dudler R, Pieterse CMJ, Unkles SE, Michelmore RW (1993) Expression and antisense inhibition of transgenes in Phytophthora infestans is modulated by choice of promoter and position effects. Gene 133: 63-69
21. Judelson HS, Michelmore RW (1990) Highly abundant and stage-specific mRNAs in the obligate pathogen Bremia lactucae. Mol Plant-Microbe Interact 3: 225-232
22. Kamoun S, Hraber PT, Sobral BWS, Nuss D, Govers F (1999a) Initial assessment of gene diversity for the oomycete pathogen Phytophthora infestans based on expressed sequences. Fungal Genet Biol 28: 94-106
23. Kamoun S, Huitema E, Vleeshouwers VGAA (1999b) Resistance to oomycetes: a general role for the hypersensitive response? Trends Plant Sci 4: 196-200
24. Kasuga T, Salimath SS, Shi J, Gijzen M, Buzzell RI, Bhattacharyya MK (1997) High resolution genetic and physical mapping of molecular markers linked to the Phytophthora resistance gene Rpsl-k in soybean. Mol Plant-Microbe Interact 9: 1035-1044
25. Kaufmann MJ, Gerdemann JW (1958) Root and stem rot of soybeans caused by Phytophthora sojae n.sp. Phytopathology 48: 201-208
26. Mao Y, Tyler BM (1991) Genome organization of Phytophthora megasperma f.sp. glycinea. Exp Mycol 15: 283-291
27. Martinez HM (1983) An efficient method for finding repeats in molecular sequences. Nucleic Acids Res 11: 4629-4634
28. Morris PF, Bone E, Tyler BM (1998) Chemotropic and contact responses of Phytophthora sojae hyphae to soybean isoflavonoids and artificial substrates. Plant Physiol 117: 1171-1178
29. Needleman SB, Wunch CD (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 48: 443-453
30. Nes WD (1987) Biosynthesis and requirement of sterols in the growth and reproduction of the oomycetes. In G Fuller, WD Nes, eds, Ecology and Metabolism of Plant Lipids. ACS Symposium Series 325. American Chemical Society, Washington, DC, pp 304-328
31. Rutherford FS, Ward EWB (1985) Estimation of relative DNA content in nuclei of races of Phytophthora megasperma f. sp. glycinea by quantitative fluorescence microscopy. Can J Genet Cytoi 27: 614-616
32. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
33. Schmitthenner AF (1985) Problems and progress in control of Phytophthora root rot of soybean. Plant Dis 69: 362-368
34. Steele CL, Gijzen M, Qutob D, Dixon RA (1999) Molecular characterization of the enzyme catalyzing the aryl migration reaction of isoflavonoid biosynthesis in soybean. Arch Biochem Biophys 367: 146-150
35. Stossel P, Lazarovits G, Ward EWB (1980) Penetration and growth of compatible and incompatible races of Phytophthora megasperma var. sojae in soybean hypocotyl tissues differing in age. Can J Bot 58: 2594-2601
36. Tyler BM, Förster H, Coffey MD (1995) Inheritance of avirulence factors and restriction fragment length polymorphism markers in outcrosses of the Öomycete Phytophthora sojae. Mol Plant-Microbe Interact 8: 515-523
37. van West P, Kamoun S, van 't Klooster JW, Govers F (1999) Ric1, a stress induced gene of the potato late blight pathogen Phytophthora infestans. Curr Genet 36: 310-315
38. Voglmayr H, Greilhuber J (1998) Genome size determination in Peronosporales (Oomycota) by Feulgen image analysis. Fungal Genet Biol 25: 181-195
39. Wang CS, Vodkin LO (1994) Extraction of RNA from tissues containing high levels of procyanidins that bind RNA. Plant Mol Biol 12: 132-145
40. Ward EWB (1990) The interaction of soya beans with Phytophthora megasperma f. sp. glycinea: pathogenicity. In B Hornby, ed, Biological Control of Soilborne Plant Pathogens. CAB International, Wallingford, UK, pp 311-327
41. Ward EWB, Cahill DM, Bhattacharyya MK (1989) Early cytological differences between compatible and incompatible interactions of soybeans with Phytophthora megasperma f.sp. glycinea. Physiol Mol Plant Pathol 34: 267-283
42. Ward EWB, Lazarovits G, Unwin CH, Buzzell RI (1979) Hypocotyl reactions and glyceollin in soybeans inoculated with zoospores of Phytophthora megasperma var. sojae. Phytopathology 69: 951-955
43. Waugh M, Hraber P, Weller J, Wu Y, Chen G, Inman J, Kiphart D, Sobral B (2000) The Phytophthora Genome Initiative Database: informatics and analysis for distributed pathogenomic research. Nucleic Acids Res 28: 87-90
44. Whisson SC, Drenth A, Maclean DJ, Irwin JAG (1995) Phytophthora sojae avirulence genes, RAPD, and RFLP markers used to construct a detailed genetic linkage map. Mol Plant-Microbe Interact 8: 988-995
45. Wrather JA, Chambers AY, Fox JA, Moore WF, Sciumbato GL (1995) Soybean disease loss estimates for the southern United States, 1974 to 1994. Plant Dis 79: 1076-1079