메뉴 건너뛰기




Volumn 6, Issue MAR, 2015, Pages

Non-coding RNAs and HIV: Viral manipulation of host dark matter to shape the cellular environment

Author keywords

Apoptosis; Double strand breaks; HIV 1; Host pathogen interactions; Immune evasion; Long non coding RNA; microRNAs

Indexed keywords

LONG UNTRANSLATED RNA; MICRORNA; MICRORNA 155; MICRORNA 29A; MICRORNA 29B; PROTEIN P53; UNTRANSLATED RNA;

EID: 84927513878     PISSN: None     EISSN: 16648021     Source Type: Journal    
DOI: 10.3389/fgene.2015.00108     Document Type: Review
Times cited : (23)

References (119)
  • 1
    • 61449173947 scopus 로고    scopus 로고
    • Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication
    • Ahluwalia, J. K., Khan, S. Z., Soni, K., Rawat, P., Gupta, A., Hariharan, M., et al. (2008). Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication. Retrovirology 5:117. doi: 10.1186/1742-4690-5-117.
    • (2008) Retrovirology , vol.5 , pp. 117
    • Ahluwalia, J.K.1    Khan, S.Z.2    Soni, K.3    Rawat, P.4    Gupta, A.5    Hariharan, M.6
  • 2
    • 84883414693 scopus 로고    scopus 로고
    • The HIV-1 Nef protein binds argonaute-2 and functions as a viral suppressor of RNA interference
    • Aqil, M., Naqvi, A. R., Bano, A. S., and Jameel, S. (2013). The HIV-1 Nef protein binds argonaute-2 and functions as a viral suppressor of RNA interference. PLoS ONE 8:e74472. doi: 10.1371/journal.pone.0074472.
    • (2013) PLoS ONE , vol.8
    • Aqil, M.1    Naqvi, A.R.2    Bano, A.S.3    Jameel, S.4
  • 3
    • 84921435563 scopus 로고    scopus 로고
    • The HIV Nef protein modulates cellular and exosomal miRNA profiles in human monocytic cells
    • Aqil, M., Naqvi, A. R., Mallik, S., Bandyopadhyay, S., Maulik, U., and Jameel, S. (2014). The HIV Nef protein modulates cellular and exosomal miRNA profiles in human monocytic cells. J. Extracell. Vesicles 3:23129. doi: 10.3402/jev.v3.23129.
    • (2014) J. Extracell. Vesicles , vol.3 , pp. 23129
    • Aqil, M.1    Naqvi, A.R.2    Mallik, S.3    Bandyopadhyay, S.4    Maulik, U.5    Jameel, S.6
  • 4
    • 77956820913 scopus 로고    scopus 로고
    • The effect of clade-specific sequence polymorphisms on HIV-1 protease activity and inhibitor resistance pathways
    • Bandaranayake, R. M., Kolli, M., King, N. M., Nalivaika, E. A., Heroux, A., Kakizawa, J., et al. (2010). The effect of clade-specific sequence polymorphisms on HIV-1 protease activity and inhibitor resistance pathways. J. Virol. 84, 9995-10003. doi: 10.1128/JVI.00505-10.
    • (2010) J. Virol , vol.84 , pp. 9995-10003
    • Bandaranayake, R.M.1    Kolli, M.2    King, N.M.3    Nalivaika, E.A.4    Heroux, A.5    Kakizawa, J.6
  • 5
    • 68149171901 scopus 로고    scopus 로고
    • Computational challenges in miRNA target predictions: to be or not to be a true target?
    • 803069
    • Barbato, C., Arisi, I., Frizzo, M. E., Brandi, R., Da Sacco, L., and Masotti, A. (2009). Computational challenges in miRNA target predictions: to be or not to be a true target? J. Biomed. Biotechnol. 2009:803069. doi: 10.1155/2009/803069.
    • (2009) J. Biomed. Biotechnol , vol.2009
    • Barbato, C.1    Arisi, I.2    Frizzo, M.E.3    Brandi, R.4    Da Sacco, L.5    Masotti, A.6
  • 6
    • 19344370167 scopus 로고    scopus 로고
    • Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing
    • Bennasser, Y., Le, S. Y., Benikrane, M., and Jeang, K. T. (2005). Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing. Immunity 22, 607-619. doi: 10.1016/j.immuni.2005.03.010.
    • (2005) Immunity , vol.22 , pp. 607-619
    • Bennasser, Y.1    Le, S.Y.2    Benikrane, M.3    Jeang, K.T.4
  • 7
    • 73549099347 scopus 로고    scopus 로고
    • Effector mechanisms in HIV-1 infected elite controllers: highly active immune responses?
    • Blankson, J. N. (2010). Effector mechanisms in HIV-1 infected elite controllers: highly active immune responses? Antiviral Res. 85, 295-302. doi: 10.1016/j.antiviral.2009.08.007.
    • (2010) Antiviral Res , vol.85 , pp. 295-302
    • Blankson, J.N.1
  • 8
    • 0025961771 scopus 로고
    • A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome
    • Brown, C. J., Ballabio, A., Rupert, J. L., Lafreniere, R. G., Grompe, M., Tonlorenzi, R., et al. (1991). A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome. Nature 349, 38-44. doi: 10.1038/349038a0.
    • (1991) Nature , vol.349 , pp. 38-44
    • Brown, C.J.1    Ballabio, A.2    Rupert, J.L.3    Lafreniere, R.G.4    Grompe, M.5    Tonlorenzi, R.6
  • 9
    • 77956271694 scopus 로고    scopus 로고
    • Lentivirus-associated MAPK/ERK2 phosphorylates EMD and regulates infectivity
    • Bukong, T. N., Hall, W. W., and Jacque, J. M. (2010). Lentivirus-associated MAPK/ERK2 phosphorylates EMD and regulates infectivity. J. Gen. Virol. 91, 2381-2392. doi: 10.1099/vir.0.019604-0.
    • (2010) J. Gen. Virol , vol.91 , pp. 2381-2392
    • Bukong, T.N.1    Hall, W.W.2    Jacque, J.M.3
  • 10
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili, M. N., Trapnell, C., Goff, L., Koziol, M., Tazon-Vega, B., Regev, A., et al. (2011). Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 25, 1915-1927. doi: 10.1101/gad.17446611.
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6
  • 11
    • 84897128298 scopus 로고    scopus 로고
    • The noncoding RNA revolution-trashing old rules to forge new ones
    • Cech, T. R., and Steitz, J. A. (2014). The noncoding RNA revolution-trashing old rules to forge new ones. Cell 157, 77-94. doi: 10.1016/j.cell.2014.03.008.
    • (2014) Cell , vol.157 , pp. 77-94
    • Cech, T.R.1    Steitz, J.A.2
  • 13
    • 0035282334 scopus 로고    scopus 로고
    • Mammalian MAP kinase signalling cascades
    • Chang, L., and Karin, M. (2001). Mammalian MAP kinase signalling cascades. Nature 410, 37-40. doi: 10.1038/35065000.
    • (2001) Nature , vol.410 , pp. 37-40
    • Chang, L.1    Karin, M.2
  • 14
    • 84874589177 scopus 로고    scopus 로고
    • Next-generation sequencing of small RNAs from HIV-infected cells identifies phased microRNA expression patterns and candidate novel microRNAs differentially expressed upon infection
    • Chang, S. T., Thomas, M. J., Sova, P., Green, R. R., Palermo, R. E., and Katze, M. G. (2013). Next-generation sequencing of small RNAs from HIV-infected cells identifies phased microRNA expression patterns and candidate novel microRNAs differentially expressed upon infection. MBio 4:e00549-e00612. doi: 10.1128/mBio.00549-12.
    • (2013) MBio , vol.4
    • Chang, S.T.1    Thomas, M.J.2    Sova, P.3    Green, R.R.4    Palermo, R.E.5    Katze, M.G.6
  • 15
    • 84903743538 scopus 로고    scopus 로고
    • MicroRNA binding to the HIV-1 Gag protein inhibits Gag assembly and virus production
    • Chen, A. K., Sengupta, P., Waki, K., Van Engelenburg, S. B., Ochiya, T., Ablan, S. D., et al. (2014). MicroRNA binding to the HIV-1 Gag protein inhibits Gag assembly and virus production. Proc. Natl. Acad. Sci. U.S.A. 111, E2676-E2683. doi: 10.1073/pnas.1408037111.
    • (2014) Proc. Natl. Acad. Sci. U.S.A , vol.111 , pp. E2676-E2683
    • Chen, A.K.1    Sengupta, P.2    Waki, K.3    Van Engelenburg, S.B.4    Ochiya, T.5    Ablan, S.D.6
  • 16
    • 84875248780 scopus 로고    scopus 로고
    • miR-132 enhances HIV-1 replication
    • Chiang, K., Liu, H., and Rice, A. (2013). miR-132 enhances HIV-1 replication. Virology 438, 1-4. doi: 10.1016/j.virol.2012.12.016.
    • (2013) Virology , vol.438 , pp. 1-4
    • Chiang, K.1    Liu, H.2    Rice, A.3
  • 17
    • 77957796766 scopus 로고    scopus 로고
    • Absence of DICER in monocytes and its regulation by HIV-1
    • Coley, W., Van Duyne, R., Carpio, L., Guendel, I., Kehn-Hall, K., Chevalier, S., et al. (2010). Absence of DICER in monocytes and its regulation by HIV-1. J. Biol. Chem. 285, 31930-31943. doi: 10.1074/jbc. M110.101709.
    • (2010) J. Biol. Chem , vol.285 , pp. 31930-31943
    • Coley, W.1    Van Duyne, R.2    Carpio, L.3    Guendel, I.4    Kehn-Hall, K.5    Chevalier, S.6
  • 18
    • 84879422443 scopus 로고    scopus 로고
    • HIV-1 causes CD4 cell death through DNA-dependent protein kinase during viral integration
    • Cooper, A., Garcia, M., Petrovas, C., Yamamoto, T., Koup, R. A., and Nabel, G. J. (2013). HIV-1 causes CD4 cell death through DNA-dependent protein kinase during viral integration. Nature 498, 376-380. doi: 10.1038/nature12274.
    • (2013) Nature , vol.498 , pp. 376-380
    • Cooper, A.1    Garcia, M.2    Petrovas, C.3    Yamamoto, T.4    Koup, R.A.5    Nabel, G.J.6
  • 20
    • 77951972792 scopus 로고    scopus 로고
    • Regulation of microRNA biogenesis: a miRiad of mechanisms
    • Davis, B. N., and Hata, A. (2009). Regulation of microRNA biogenesis: a miRiad of mechanisms. Cell Commun. Signal. 7:18. doi: 10.1186/1478-811X-7-18.
    • (2009) Cell Commun. Signal , vol.7 , pp. 18
    • Davis, B.N.1    Hata, A.2
  • 21
    • 84865727393 scopus 로고    scopus 로고
    • The GENCODE v7 catalog of human long noncoding RNA: analysis if their gene structure, evolution, and expression
    • Derrien, T., Johnson, R., Bussotti, G., Tanzer, A., Djebali, S., Tilgner, H., et al. (2012). The GENCODE v7 catalog of human long noncoding RNA: analysis if their gene structure, evolution, and expression. Genome Res. 22, 1775-1789. doi: 10.1101/gr.132159.111.
    • (2012) Genome Res , vol.22 , pp. 1775-1789
    • Derrien, T.1    Johnson, R.2    Bussotti, G.3    Tanzer, A.4    Djebali, S.5    Tilgner, H.6
  • 22
    • 48949089963 scopus 로고    scopus 로고
    • Direct and indirect roles of viral suppressors of RNA silencing in pathogenesis
    • Diaz-Pendon, J. A., and Ding, S. W. (2008). Direct and indirect roles of viral suppressors of RNA silencing in pathogenesis. Annu. Rev. Phytopathol. 46, 303-326. doi: 10.1146/annurev.phyto.46.081407.104746.
    • (2008) Annu. Rev. Phytopathol , vol.46 , pp. 303-326
    • Diaz-Pendon, J.A.1    Ding, S.W.2
  • 23
    • 84901954135 scopus 로고    scopus 로고
    • LincRNA-p21 activates p21 in cis to promote polycomb target gene expression and to enforce the G1/S checkpoint
    • Dimitrova, N., Zamudio, J. R., Jong, R. M., Soukup, D., Resnick, R., Sarma, K., et al. (2014). LincRNA-p21 activates p21 in cis to promote polycomb target gene expression and to enforce the G1/S checkpoint. Mol. Cell 54, 777-790. doi: 10.1016/j.molcel.2014.04.025.
    • (2014) Mol. Cell , vol.54 , pp. 777-790
    • Dimitrova, N.1    Zamudio, J.R.2    Jong, R.M.3    Soukup, D.4    Resnick, R.5    Sarma, K.6
  • 25
    • 79251480064 scopus 로고    scopus 로고
    • Abortive HIV-1 infection mediates CD4 T cell depletion and inflammation in human lymphoid tissue
    • Doitsh, G., Cavrois, M., Lassen, K. G., Zepeda, O., Yang, Z., Santiago, M. L., et al. (2010). Abortive HIV-1 infection mediates CD4 T cell depletion and inflammation in human lymphoid tissue. Cell 143, 789-801. doi: 10.1016/j.cell.2010.11.001.
    • (2010) Cell , vol.143 , pp. 789-801
    • Doitsh, G.1    Cavrois, M.2    Lassen, K.G.3    Zepeda, O.4    Yang, Z.5    Santiago, M.L.6
  • 26
    • 0035942736 scopus 로고    scopus 로고
    • Duplexes of 21± nucleotide RNAs mediate RNA interference in cultured mammalian cells
    • Elbashir, S. M., Harborth, J., Lendecke, W., Yalcin, A., Weber, K., Tuschl, T., et al. (2001). Duplexes of 21± nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411, 494-498. doi: 10.1038/35078107.
    • (2001) Nature , vol.411 , pp. 494-498
    • Elbashir, S.M.1    Harborth, J.2    Lendecke, W.3    Yalcin, A.4    Weber, K.5    Tuschl, T.6
  • 27
    • 60649103811 scopus 로고    scopus 로고
    • MDM2-dependent downregulation of p21 and hnRNP K provides a switch between apoptosis and growth arrest induced by pharmacologically activated p53
    • Enge, M., Bao, W., Hedstom, E., Jackson, S. P., Moumen, A., and Selivanova, G. (2009). MDM2-dependent downregulation of p21 and hnRNP K provides a switch between apoptosis and growth arrest induced by pharmacologically activated p53. Cancer Cell 15, 171-183. doi: 10.1016/j.ccr.2009.01.019.
    • (2009) Cancer Cell , vol.15 , pp. 171-183
    • Enge, M.1    Bao, W.2    Hedstom, E.3    Jackson, S.P.4    Moumen, A.5    Selivanova, G.6
  • 28
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire, A., Xu, S., Montgomery, M. K., Kostas, S. A., Driver, S. E., and Mello, C. C. (1998). Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391, 806-811. doi: 10.1038/35888.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 29
    • 26644459229 scopus 로고    scopus 로고
    • The role of ERK1 and ERK2 in multiple stages of T cell development
    • Fischer, A. M., Katayama, C. D., Pages, G., Pouyssegur, J., and Hedrick, S. M. (2005). The role of ERK1 and ERK2 in multiple stages of T cell development. Immunity 23, 431-443. doi: 10.1016/j.immuni.2005.08.013.
    • (2005) Immunity , vol.23 , pp. 431-443
    • Fischer, A.M.1    Katayama, C.D.2    Pages, G.3    Pouyssegur, J.4    Hedrick, S.M.5
  • 30
    • 84860362829 scopus 로고    scopus 로고
    • Active chromatin and noncoding RNAs: an intimate relationship
    • Flynn, R. A., and Chang, H. Y. (2012). Active chromatin and noncoding RNAs: an intimate relationship. Curr. Opin. Genet. Dev. 22, 172-178. doi: 10.1016/j.gde.2011.11.002.
    • (2012) Curr. Opin. Genet. Dev , vol.22 , pp. 172-178
    • Flynn, R.A.1    Chang, H.Y.2
  • 31
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman, R. C., Farh, K. K., Burge, C. B., and Bartel, D. P. (2009). Most mammalian mRNAs are conserved targets of microRNAs. Genome Res. 19, 92-105. doi: 10.1101/gr.082701.108.
    • (2009) Genome Res , vol.19 , pp. 92-105
    • Friedman, R.C.1    Farh, K.K.2    Burge, C.B.3    Bartel, D.P.4
  • 32
    • 79960883949 scopus 로고    scopus 로고
    • Comparative expression profile of miRNA and mRNA in primary peripheral blood mononuclear cells infected with human immunodeficiency virus (HIV-1)
    • Gupta, A., Nagilla, P., Le, H.-S. S., Bunney, C., Zych, C., Thalamuthu, A., et al. (2011). Comparative expression profile of miRNA and mRNA in primary peripheral blood mononuclear cells infected with human immunodeficiency virus (HIV-1). PLoS ONE 6:e22730. doi: 10.1371/journal.pone.0022730.
    • (2011) PLoS ONE , vol.6
    • Gupta, A.1    Nagilla, P.2    Le, H.-S.S.3    Bunney, C.4    Zych, C.5    Thalamuthu, A.6
  • 33
    • 62249133709 scopus 로고    scopus 로고
    • Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    • Guttman, M., Amit, I., Garber, M., French, C., Lin, M. F., Feldser, D., et al. (2009). Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458, 223-227. doi: 10.1038/nature07672.
    • (2009) Nature , vol.458 , pp. 223-227
    • Guttman, M.1    Amit, I.2    Garber, M.3    French, C.4    Lin, M.F.5    Feldser, D.6
  • 34
    • 84857066786 scopus 로고    scopus 로고
    • Modular regulatory principles of large non-coding RNAs
    • Guttman, M., and Rinn, J. L. (2012). Modular regulatory principles of large non-coding RNAs. Nature 482, 339-346. doi: 10.1038/nature10887.
    • (2012) Nature , vol.482 , pp. 339-346
    • Guttman, M.1    Rinn, J.L.2
  • 35
    • 27144550559 scopus 로고    scopus 로고
    • TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing
    • Haase, A. D., Jaskiewicz, L., Zhang, H., Laine, S., Sack, R., Gatignol, A., et al. (2005). TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing. EMBO Rep. 6, 961-967. doi: 10.1038/sj.embor.7400509.
    • (2005) EMBO Rep , vol.6 , pp. 961-967
    • Haase, A.D.1    Jaskiewicz, L.2    Zhang, H.3    Laine, S.4    Sack, R.5    Gatignol, A.6
  • 36
    • 0035095885 scopus 로고    scopus 로고
    • ERK phosphorylation drives cytoplasmic accumulation of hnRNP-K and inhibition of mRNA translation
    • Habelhah, H., Shah, K., Huang, L., Ostareck-Lederer, A., Burlingame, A. L., Shokat, K. M., et al. (2001). ERK phosphorylation drives cytoplasmic accumulation of hnRNP-K and inhibition of mRNA translation. Nat. Cell Biol. 3, 325-330. doi: 10.1038/35060131.
    • (2001) Nat. Cell Biol , vol.3 , pp. 325-330
    • Habelhah, H.1    Shah, K.2    Huang, L.3    Ostareck-Lederer, A.4    Burlingame, A.L.5    Shokat, K.M.6
  • 38
    • 70350088548 scopus 로고    scopus 로고
    • Mechanisms of double-strand break repair in somatic mammalian cells
    • Hartlerode, A. J., and Scully, R. (2009). Mechanisms of double-strand break repair in somatic mammalian cells. Biochem. J. 423, 157-168. doi: 10.1042/BJ20090942.
    • (2009) Biochem. J , vol.423 , pp. 157-168
    • Hartlerode, A.J.1    Scully, R.2
  • 39
    • 79955794490 scopus 로고    scopus 로고
    • Tat RNA silencing suppressor activity contributes to perturbation of lymphocyte miRNA by HIV-1
    • Hayes, A. M., Qian, S., Yu, L., and Boris-Lawrie, K. (2011). Tat RNA silencing suppressor activity contributes to perturbation of lymphocyte miRNA by HIV-1. Retrovirology 8:36. doi: 10.1091/mbc. E13-09-0558.
    • (2011) Retrovirology , vol.8 , pp. 36
    • Hayes, A.M.1    Qian, S.2    Yu, L.3    Boris-Lawrie, K.4
  • 40
    • 84891800602 scopus 로고    scopus 로고
    • NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies
    • Hirose, T., Virnicchi, G., Tanigawa, A., Naganuma, T., Li, R., Kimura, H., et al. (2014). NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies. Mol. Biol. Cell 25, 169-183. doi: 10.1186/1742-4690-5-118.
    • (2014) Mol. Biol. Cell , vol.25 , pp. 169-183
    • Hirose, T.1    Virnicchi, G.2    Tanigawa, A.3    Naganuma, T.4    Li, R.5    Kimura, H.6
  • 41
    • 84870342928 scopus 로고    scopus 로고
    • The extent of sequence complementarity correlates with the potency of cellular miRNA-mediated restriction of HIV-1
    • Houzet, L., Klase, Z., Yeung, M. L., Wu, A., Le, S.-Y., Quiñones, M., et al. (2012). The extent of sequence complementarity correlates with the potency of cellular miRNA-mediated restriction of HIV-1. Nucleic Acids Res. 40, 11684-11696. doi: 10.1093/nar/gks912.
    • (2012) Nucleic Acids Res , vol.40 , pp. 11684-11696
    • Houzet, L.1    Klase, Z.2    Yeung, M.L.3    Wu, A.4    Le, S.-Y.5    Quiñones, M.6
  • 42
    • 61349100846 scopus 로고    scopus 로고
    • MicroRNA profile changes in human immunodeficiency virus type 1 (HIV-1) seropositive individuals
    • Houzet, L., Yeung, M. L., de Lame, V., Desai, D., Smith, S. M., and Jeang, K. T. (2008). MicroRNA profile changes in human immunodeficiency virus type 1 (HIV-1) seropositive individuals. Retrovirology 5:118. doi: 10.1038/nm1639.
    • (2008) Retrovirology , vol.5 , pp. 118
    • Houzet, L.1    Yeung, M.L.2    de Lame, V.3    Desai, D.4    Smith, S.M.5    Jeang, K.T.6
  • 43
    • 34948817683 scopus 로고    scopus 로고
    • Cellular microRNAs contribute to HIV-1 latency in resting primary CD4+ T lymphocytes
    • Huang, J., Wang, F., Argyris, E., Chen, K., Liang, Z., Tian, H., et al. (2007). Cellular microRNAs contribute to HIV-1 latency in resting primary CD4+ T lymphocytes. Nat. Med. 13, 1241-1247. doi: 10.1016/j.cell.2010.06.040.
    • (2007) Nat. Med , vol.13 , pp. 1241-1247
    • Huang, J.1    Wang, F.2    Argyris, E.3    Chen, K.4    Liang, Z.5    Tian, H.6
  • 44
    • 77955323879 scopus 로고    scopus 로고
    • A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
    • Huarte, M., Guttman, M., Feldser, D., Garber, M., Koziol, M. J., Kenzelmann-Broz, D., et al. (2010). A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 142, 409-419. doi: 10.1016/j.cell.2010.06.040.
    • (2010) Cell , vol.142 , pp. 409-419
    • Huarte, M.1    Guttman, M.2    Feldser, D.3    Garber, M.4    Koziol, M.J.5    Kenzelmann-Broz, D.6
  • 46
    • 36148958682 scopus 로고    scopus 로고
    • MicroRNAs in cell proliferation, cell death, and tumorigenesis
    • Hwang, H. Q., and Mendell, J. T. (2007). MicroRNAs in cell proliferation, cell death, and tumorigenesis. Br. J. Cancer 96, R40-R44. doi: 10.1016/j.molcel.2014.01.009.
    • (2007) Br. J. Cancer , vol.96 , pp. R40-R44
    • Hwang, H.Q.1    Mendell, J.T.2
  • 47
    • 84893452948 scopus 로고    scopus 로고
    • Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli
    • Imamura, K., Imamachi, N., Akizuki, G., Kumakura, M., Kawaguchi, A., Nagata, K., et al. (2014). Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli. Mol. Cell 53, 393-406. doi: 10.1016/j.molcel.2014.01.009.
    • (2014) Mol. Cell , vol.53 , pp. 393-406
    • Imamura, K.1    Imamachi, N.2    Akizuki, G.3    Kumakura, M.4    Kawaguchi, A.5    Nagata, K.6
  • 48
    • 70350504453 scopus 로고    scopus 로고
    • The DNA damage response in human biology and disease
    • Jackson, S. P., and Bartek, J. (2009). The DNA damage response in human biology and disease. Nature 461, 1071-1078. doi: 10.1038/nature08467.
    • (2009) Nature , vol.461 , pp. 1071-1078
    • Jackson, S.P.1    Bartek, J.2
  • 49
    • 0032079658 scopus 로고    scopus 로고
    • Modulation of HIV-1 infectivity by MAPK, a virion-associated kinase
    • Jacque, J. M., Mann, A., Enslen, H., Sharova, N., Brichacek, B., Davis, R. J., et al. (1998). Modulation of HIV-1 infectivity by MAPK, a virion-associated kinase. EMBO J. 17, 2607-2618. doi: 10.1093/emboj/17.9.2607.
    • (1998) EMBO J , vol.17 , pp. 2607-2618
    • Jacque, J.M.1    Mann, A.2    Enslen, H.3    Sharova, N.4    Brichacek, B.5    Davis, R.J.6
  • 50
    • 84885058930 scopus 로고    scopus 로고
    • Antiretorviral therapy initiated within 6 months of HIV infection is associated with lower T-cell activation and smaller HIV reservoir size
    • Jain, V., Hartogensis, W., Bacchetti, P., Hunt, P. W., Hatano, H., Sinclair, E., et al. (2013). Antiretorviral therapy initiated within 6 months of HIV infection is associated with lower T-cell activation and smaller HIV reservoir size. J. Infect. Dis. 208, 1202-1211. doi: 10.1093/infdis/jit311.
    • (2013) J. Infect. Dis , vol.208 , pp. 1202-1211
    • Jain, V.1    Hartogensis, W.2    Bacchetti, P.3    Hunt, P.W.4    Hatano, H.5    Sinclair, E.6
  • 51
    • 77955110979 scopus 로고    scopus 로고
    • Genome-wide computational identification and manual annotation of human long noncoding RNA genes
    • Jia, H., Osak, M., Bogu, G. K., Stanton, L. W., Johnson, R., and Lipovich, L. (2010). Genome-wide computational identification and manual annotation of human long noncoding RNA genes. RNA 16, 1478-1487. doi: 10.1261/rna.1951310.
    • (2010) RNA , vol.16 , pp. 1478-1487
    • Jia, H.1    Osak, M.2    Bogu, G.K.3    Stanton, L.W.4    Johnson, R.5    Lipovich, L.6
  • 52
    • 24644483623 scopus 로고    scopus 로고
    • Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA
    • Jopling, C. L., Yi, M., Lancaster, A. M., Lemon, S. M., and Sarnow, P. (2005). Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA. Science 309, 1577-1581. doi: 10.1126/science.1113329.
    • (2005) Science , vol.309 , pp. 1577-1581
    • Jopling, C.L.1    Yi, M.2    Lancaster, A.M.3    Lemon, S.M.4    Sarnow, P.5
  • 53
    • 73149122533 scopus 로고    scopus 로고
    • Imaging the interaction of HIV-1 genomes and Gag during assembly of individual viral particles
    • Jouvenet, N., Simon, S. M., and Bieniasz, P. D. (2009). Imaging the interaction of HIV-1 genomes and Gag during assembly of individual viral particles. Proc. Natl. Acad. Sci. U.S.A. 106, 19114-19119. doi: 10.1073/pnas.0907364106.
    • (2009) Proc. Natl. Acad. Sci. U.S.A , vol.106 , pp. 19114-19119
    • Jouvenet, N.1    Simon, S.M.2    Bieniasz, P.D.3
  • 54
    • 67650921949 scopus 로고    scopus 로고
    • Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
    • Khalil, A. M., Guttman, M., Huarte, M., Garber, M., Raj, A., Rivea Morales, D., et al. (2009). Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc. Natl. Acad. Sci. U.S.A. 106, 11667-11672. doi: 10.1073/pnas.0904715106.
    • (2009) Proc. Natl. Acad. Sci. U.S.A , vol.106 , pp. 11667-11672
    • Khalil, A.M.1    Guttman, M.2    Huarte, M.3    Garber, M.4    Raj, A.5    Rivea Morales, D.6
  • 55
    • 0035093737 scopus 로고    scopus 로고
    • DNA double-strand breaks: signalling, repair and the cancer connection
    • Khanna, K. K., and Jackson, S. P. (2001). DNA double-strand breaks: signalling, repair and the cancer connection. Nat. Genet. 27, 247-254. doi: 10.1038/85798.
    • (2001) Nat. Genet , vol.27 , pp. 247-254
    • Khanna, K.K.1    Jackson, S.P.2
  • 56
    • 84870378445 scopus 로고    scopus 로고
    • MicroRNAs and HIV-1: complex interactions
    • Klase, Z., Houzet, L., and Jeang, K.-T. T. (2012). MicroRNAs and HIV-1: complex interactions. J. Biol. Chem. 287, 40884-40890. doi: 10.1074/jbc. R112.415448.
    • (2012) J. Biol. Chem , vol.287 , pp. 40884-40890
    • Klase, Z.1    Houzet, L.2    Jeang, K.-T.T.3
  • 57
    • 84878451215 scopus 로고    scopus 로고
    • Gene regulation by the act of long non-coding RNA transcription
    • Kornienko, A. E., Guenzl, P. M., Barlow, D. P., and Pauler, F. M. (2013). Gene regulation by the act of long non-coding RNA transcription. BMC Biol. 11:59. doi: 10.1186/1741-7007-11-59.
    • (2013) BMC Biol , vol.11 , pp. 59
    • Kornienko, A.E.1    Guenzl, P.M.2    Barlow, D.P.3    Pauler, F.M.4
  • 58
    • 84891818318 scopus 로고    scopus 로고
    • miRBase: annotating high confidence miRNAs using deep sequencing data
    • Kozomara, A., and Griffiths-Jones, S. (2014). miRBase: annotating high confidence miRNAs using deep sequencing data. Nucleic Acids Res. 42, D68-D73. doi: 10.1093/nar/gkt1181.
    • (2014) Nucleic Acids Res , vol.42 , pp. D68-D73
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 59
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee, R. C., Feinbaum, R. L., and Ambros, V. (1993). The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75, 843-854. doi: 10.1016/0092-8674(93)90529-Y.
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 60
    • 71849085384 scopus 로고    scopus 로고
    • HIV Nef is secreted in exosomes and triggers apoptosis in bystander CD4+ T cells
    • 1100122
    • Lenassi, M., Cagney, G., Liao, M., Vaupotic, T., Bartholomeeusen, K., Cheng, Y., et al. (2010). HIV Nef is secreted in exosomes and triggers apoptosis in bystander CD4+ T cells. Traffic 11:1100122. doi: 10.1111/j.1600-0854.2009.01006.x.
    • (2010) Traffic , vol.11
    • Lenassi, M.1    Cagney, G.2    Liao, M.3    Vaupotic, T.4    Bartholomeeusen, K.5    Cheng, Y.6
  • 61
    • 33750361188 scopus 로고    scopus 로고
    • Virus counterdefense: diverse strategies for evading the RNA-silencing immunity
    • Li, F., and Ding, S. W. (2006). Virus counterdefense: diverse strategies for evading the RNA-silencing immunity. Annu. Rev. Microbiol. 60, 503-531. doi: 10.1146/annurev.micro.60.080805.142205.
    • (2006) Annu. Rev. Microbiol , vol.60 , pp. 503-531
    • Li, F.1    Ding, S.W.2
  • 62
    • 84925604110 scopus 로고    scopus 로고
    • Regulation of HIV-1 latency by chromatin structure and nuclear architecture
    • [Epub ahead of print]
    • Lusic, M., and Giacca, M. (2014). Regulation of HIV-1 latency by chromatin structure and nuclear architecture. J. Mol. Biol. doi: 10.1016/j.jmb.2014.07.022 [Epub ahead of print].
    • (2014) J. Mol. Biol
    • Lusic, M.1    Giacca, M.2
  • 63
    • 84903287333 scopus 로고    scopus 로고
    • miRNA-1236 inhibits HIV-1 infection of monocytes by repressing translation of cellular factor VprBP
    • Ma, L., Shen, C. J., Cohen, É.A., Xiong, S. D., and Wang, J. H. (2014). miRNA-1236 inhibits HIV-1 infection of monocytes by repressing translation of cellular factor VprBP. PLoS ONE 9:e99535. doi: 10.1371/journal.pone.0099535.
    • (2014) PLoS ONE , vol.9
    • Ma, L.1    Shen, C.J.2    Cohen, É.A.3    Xiong, S.D.4    Wang, J.H.5
  • 64
    • 77949264933 scopus 로고    scopus 로고
    • Concerted action of cellular JNK and Pin1 restricts HIV-1 genome integration to activated CD4+ T lymphocytes
    • Manganaro, L., Lusic, M., Gutierrez, M. I., Cereseto, A., Del Sal, G., and Giacca, M. (2010). Concerted action of cellular JNK and Pin1 restricts HIV-1 genome integration to activated CD4+ T lymphocytes. Nat. Med. 16, 329-333. doi: 10.1038/nm.2102.
    • (2010) Nat. Med , vol.16 , pp. 329-333
    • Manganaro, L.1    Lusic, M.2    Gutierrez, M.I.3    Cereseto, A.4    Del Sal, G.5    Giacca, M.6
  • 65
    • 79960622503 scopus 로고    scopus 로고
    • Biogenesis and function of nuclear bodies
    • Mao, Y. S., Zhang, B., and Spector, D. L. (2011). Biogenesis and function of nuclear bodies. Trends Genet. 27, 295-306. doi: 10.1016/j.tig.2011.05.006.
    • (2011) Trends Genet , vol.27 , pp. 295-306
    • Mao, Y.S.1    Zhang, B.2    Spector, D.L.3
  • 66
    • 76249108851 scopus 로고    scopus 로고
    • Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness
    • Marques, A. C., and Ponting, C. P. (2009). Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness. Genome Biol. 10:R124. doi: 10.1186/gb-2009-10-11-r124.
    • (2009) Genome Biol , vol.10 , pp. R124
    • Marques, A.C.1    Ponting, C.P.2
  • 67
    • 3242883729 scopus 로고    scopus 로고
    • The p53 response to DNA damage
    • Meek, D. W. (2004). The p53 response to DNA damage. DNA Repair 3, 1049-1056. doi: 10.1016/j.dnarep.2004.03.027.
    • (2004) DNA Repair , vol.3 , pp. 1049-1056
    • Meek, D.W.1
  • 68
    • 77954231525 scopus 로고    scopus 로고
    • Characterisation of the RNA content of chromatin
    • Mondal, T., Rasmussen, M., Pandey, G. K., Isaksson, A., and Kanduri, C. (2010). Characterisation of the RNA content of chromatin. Genome Res. 20, 899-907. doi: 10.1101/gr.103473.109.
    • (2010) Genome Res , vol.20 , pp. 899-907
    • Mondal, T.1    Rasmussen, M.2    Pandey, G.K.3    Isaksson, A.4    Kanduri, C.5
  • 69
    • 28944446040 scopus 로고    scopus 로고
    • hnRNP K: an HDM2 target and transcriptional coactivator of p53 in response to DNA damage
    • Moumen, A., Masterson, P., O'Connor, M. J., and Jackson, S. P. (2005). hnRNP K: an HDM2 target and transcriptional coactivator of p53 in response to DNA damage. Cell 123, 1065-1078. doi: 10.1016/j.cell.2005.09.032.
    • (2005) Cell , vol.123 , pp. 1065-1078
    • Moumen, A.1    Masterson, P.2    O'Connor, M.J.3    Jackson, S.P.4
  • 70
    • 0035942236 scopus 로고    scopus 로고
    • RNA is a structural element in retrovirus particles
    • Muriaux, D., Mirro, J., Harvin, D., and Rein, A. (2001). RNA is a structural element in retrovirus particles. Proc. Natl. Acad. Sci. U.S.A. 98, 5246-5251. doi: 10.1073/pnas.091000398.
    • (2001) Proc. Natl. Acad. Sci. U.S.A , vol.98 , pp. 5246-5251
    • Muriaux, D.1    Mirro, J.2    Harvin, D.3    Rein, A.4
  • 71
    • 79953858658 scopus 로고    scopus 로고
    • No-nonsense functions for long noncoding RNAs
    • Nagano, T., and Fraser, P. (2011). No-nonsense functions for long noncoding RNAs. Cell 145, 178-181. doi: 10.1016/j.cell.2011.03.014.
    • (2011) Cell , vol.145 , pp. 178-181
    • Nagano, T.1    Fraser, P.2
  • 72
    • 77957243921 scopus 로고    scopus 로고
    • Long noncoding RNAs with enhancer-like function in human cells
    • Ørom, U. A., Derrien, T., Beringer, M., Gumireddy, K., Gardini, A., Bussotti, G., et al. (2010). Long noncoding RNAs with enhancer-like function in human cells. Cell 143, 46-58. doi: 10.1016/j.cell.2011.03.014.
    • (2010) Cell , vol.143 , pp. 46-58
    • Ørom, U.A.1    Derrien, T.2    Beringer, M.3    Gumireddy, K.4    Gardini, A.5    Bussotti, G.6
  • 73
    • 54049138948 scopus 로고    scopus 로고
    • Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
    • Pandey, R. R., Mondal, T., Mohammad, F., Enroth, S., Redrup, L., Komorowski, J., et al. (2008). Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Mol. Cell 32, 232-246. doi: 10.1016/j.cell.2010.09.001.
    • (2008) Mol. Cell , vol.32 , pp. 232-246
    • Pandey, R.R.1    Mondal, T.2    Mohammad, F.3    Enroth, S.4    Redrup, L.5    Komorowski, J.6
  • 74
    • 0039701522 scopus 로고    scopus 로고
    • Full peptide synthesis, purification, and characterization of six Tat variants. Differences observed between HIV-1 isolates from Africa and other continents
    • Péloponése, J. M. Jr., Collette, Y., Grégoire, C., Bailly, C., Campèse, D., Meurs, E. F., et al. (1999). Full peptide synthesis, purification, and characterization of six Tat variants. Differences observed between HIV-1 isolates from Africa and other continents. J. Biol. Chem. 274, 11473-11478. doi: 10.1074/jbc.274.17.11473.
    • (1999) J. Biol. Chem , vol.274 , pp. 11473-11478
    • Péloponése, J.M.1    Collette, Y.2    Grégoire, C.3    Bailly, C.4    Campèse, D.5    Meurs, E.F.6
  • 75
    • 0030026001 scopus 로고    scopus 로고
    • Requirement for Xist in X chromosome inactivation
    • Penny, G. D., Kay, G. F., Sheardown, S. A., Rastan, S., and Brockdorff, N. (1996). Requirement for Xist in X chromosome inactivation. Nature 379, 131-137. doi: 10.1038/379131a0.
    • (1996) Nature , vol.379 , pp. 131-137
    • Penny, G.D.1    Kay, G.F.2    Sheardown, S.A.3    Rastan, S.4    Brockdorff, N.5
  • 76
    • 70149123708 scopus 로고    scopus 로고
    • Genomic and transcriptional co-localisation of protein-coding and long non-coding RNA pairs in the developing brain
    • Ponjavic, J., Oliver, P. L., Lunter, G., and Ponting, C. P. (2009). Genomic and transcriptional co-localisation of protein-coding and long non-coding RNA pairs in the developing brain. PLoS Genet. 5:e1000617. doi: 10.1371/journal.pgen.1000617.
    • (2009) PLoS Genet , vol.5
    • Ponjavic, J.1    Oliver, P.L.2    Lunter, G.3    Ponting, C.P.4
  • 77
    • 49949090861 scopus 로고    scopus 로고
    • The functional repertoires of metazoan genomes
    • Ponting, C. P. (2008). The functional repertoires of metazoan genomes. Nat. Rev. Genet. 9, 689-698. doi: 10.1038/nrg2413.
    • (2008) Nat. Rev. Genet , vol.9 , pp. 689-698
    • Ponting, C.P.1
  • 78
    • 78651481549 scopus 로고    scopus 로고
    • Transcribed dark matter: meaning or myth?
    • Ponting, C. P., and Belgard, T. G. (2010). Transcribed dark matter: meaning or myth? Hum. Mol. Genet. 19, R162-R168. doi: 10.1093/hmg/ddq362.
    • (2010) Hum. Mol. Genet , vol.19 , pp. R162-R168
    • Ponting, C.P.1    Belgard, T.G.2
  • 79
    • 58849125280 scopus 로고    scopus 로고
    • HIV-1 Tat RNA silencing suppressor activity is conserved across kingdoms and counteracts translational repression of HIV-1
    • Qian, S., Zhong, X., Yu, L., Ding, B., de Haan, P., and Boris-Lawrie, K. (2009). HIV-1 Tat RNA silencing suppressor activity is conserved across kingdoms and counteracts translational repression of HIV-1. Proc. Natl. Acad. Sci. U.S.A. 106, 605-610. doi: 10.1073/pnas.0806822106.
    • (2009) Proc. Natl. Acad. Sci. U.S.A , vol.106 , pp. 605-610
    • Qian, S.1    Zhong, X.2    Yu, L.3    Ding, B.4    de Haan, P.5    Boris-Lawrie, K.6
  • 80
    • 84888054227 scopus 로고    scopus 로고
    • HIV-1 evades innate immune recognition through specific cofactor recruitment
    • Rasaiyaah, J., Tan, C. P., Fletcher, A. J., Price, A. J., Blondeau, C., Hiiditch, L., et al. (2013). HIV-1 evades innate immune recognition through specific cofactor recruitment. Nature 503, 402-405. doi: 10.1038/nature12769.
    • (2013) Nature , vol.503 , pp. 402-405
    • Rasaiyaah, J.1    Tan, C.P.2    Fletcher, A.J.3    Price, A.J.4    Blondeau, C.5    Hiiditch, L.6
  • 81
    • 30044434769 scopus 로고    scopus 로고
    • Experimental validation of the regulate expression of large numbers if non-coding RNAs from the mouse genome
    • Ravasi, T., Suzuki, H., Pang, K. C., Katayama, S., Furuno, M., Okunishi, R., et al. (2006). Experimental validation of the regulate expression of large numbers if non-coding RNAs from the mouse genome. Genome Res. 16, 11-19. doi: 10.1101/gr.4200206.
    • (2006) Genome Res , vol.16 , pp. 11-19
    • Ravasi, T.1    Suzuki, H.2    Pang, K.C.3    Katayama, S.4    Furuno, M.5    Okunishi, R.6
  • 82
    • 84905440517 scopus 로고    scopus 로고
    • MicroRNAs differentially present in the plasma of HIV elite controllers reduce HIV infection in vitro
    • Reynoso, R., Laufer, N., Hackl, M., Skalicky, S., Monteforte, R., Turk, G., et al. (2014). MicroRNAs differentially present in the plasma of HIV elite controllers reduce HIV infection in vitro. Sci. Rep. 4:5915. doi: 10.1038/srep05915.
    • (2014) Sci. Rep , vol.4 , pp. 5915
    • Reynoso, R.1    Laufer, N.2    Hackl, M.3    Skalicky, S.4    Monteforte, R.5    Turk, G.6
  • 83
    • 0034641963 scopus 로고    scopus 로고
    • Defying death after DNA damage
    • Rich, T., Aleen, R. L., and Wyllie, A. H. (2000). Defying death after DNA damage. Nature 407, 777-783. doi: 10.1038/35037717.
    • (2000) Nature , vol.407 , pp. 777-783
    • Rich, T.1    Aleen, R.L.2    Wyllie, A.H.3
  • 84
    • 42449114966 scopus 로고    scopus 로고
    • Transcriptional control of human p53-related genes
    • Riley, T., Sontag, E., Chen, P., and Levine, A. (2008). Transcriptional control of human p53-related genes. Nat. Rev. Mol. Cell Biol. 9, 402-412. doi: 10.1038/nrm2395.
    • (2008) Nat. Rev. Mol. Cell Biol , vol.9 , pp. 402-412
    • Riley, T.1    Sontag, E.2    Chen, P.3    Levine, A.4
  • 85
    • 84902183146 scopus 로고    scopus 로고
    • An HIV-encoded antisense long noncoding RNA epigenetically regulates viral transcription
    • Saayman, S., Ackley, A., Turner, A. W., Famiglietti, M., Bosque, A., Clemson, M., et al. (2014). An HIV-encoded antisense long noncoding RNA epigenetically regulates viral transcription. Mol. Ther. 22, 1164-1175. doi: 10.1038/mt.2014.29.
    • (2014) Mol. Ther , vol.22 , pp. 1164-1175
    • Saayman, S.1    Ackley, A.2    Turner, A.W.3    Famiglietti, M.4    Bosque, A.5    Clemson, M.6
  • 86
    • 77749322701 scopus 로고    scopus 로고
    • Structural insights into RNA interference
    • Sashital, D. G., and Doudna, J. A. (2010). Structural insights into RNA interference. Curr. Opin. Struct. Biol. 20, 90-97. doi: 10.1016/j.sbi.2009.12.001.
    • (2010) Curr. Opin. Struct. Biol , vol.20 , pp. 90-97
    • Sashital, D.G.1    Doudna, J.A.2
  • 87
    • 80054684399 scopus 로고    scopus 로고
    • Long non-coding RNA modifies chromatin
    • Saxena, A., and Carninci, P. (2011). Long non-coding RNA modifies chromatin. Bioessays 33, 830-839. doi: 10.1002/bies.201100084.
    • (2011) Bioessays , vol.33 , pp. 830-839
    • Saxena, A.1    Carninci, P.2
  • 88
    • 79960104144 scopus 로고    scopus 로고
    • MicroRNAs in development and disease
    • Sayed, D., and Abdellatif, M. (2011). MicroRNAs in development and disease. Physiol. Rev. 91, 827-887. doi: 10.1152/physrev.00006.2010.
    • (2011) Physiol. Rev , vol.91 , pp. 827-887
    • Sayed, D.1    Abdellatif, M.2
  • 89
    • 84897997599 scopus 로고    scopus 로고
    • Role of miR-155 in the regulation of lymphocyte immune function and disease
    • Seddiki, N., Brezar, V., Ruffin, N., Lévy, Y., and Swaminathan, S. (2014). Role of miR-155 in the regulation of lymphocyte immune function and disease. Immunology 142, 32-38. doi: 10.1111/imm.12227.
    • (2014) Immunology , vol.142 , pp. 32-38
    • Seddiki, N.1    Brezar, V.2    Ruffin, N.3    Lévy, Y.4    Swaminathan, S.5
  • 90
    • 84868266765 scopus 로고    scopus 로고
    • Translation of Pur-a is targeted by cellular miRNAs to modulate the differentiation-dependent susceptibility of monocytes to HIV-1 infection
    • Shen, C. J., Jia, Y. H., Tian, R. R., Ding, M., Zhang, C., and Wang, J. H. (2012). Translation of Pur-a is targeted by cellular miRNAs to modulate the differentiation-dependent susceptibility of monocytes to HIV-1 infection. FASEB J. 26, 4755-4764. doi: 10.1096/fj.12-209023.
    • (2012) FASEB J , vol.26 , pp. 4755-4764
    • Shen, C.J.1    Jia, Y.H.2    Tian, R.R.3    Ding, M.4    Zhang, C.5    Wang, J.H.6
  • 92
    • 0037075032 scopus 로고    scopus 로고
    • The non-coding air RNA is required for silencing autosomal imprinted genes
    • Sleutels, F., Zwart, R., and Barlow, D. P. (2002). The non-coding air RNA is required for silencing autosomal imprinted genes. Nature 415, 810-813. doi: 10.1038/415810a.
    • (2002) Nature , vol.415 , pp. 810-813
    • Sleutels, F.1    Zwart, R.2    Barlow, D.P.3
  • 93
    • 70350738592 scopus 로고    scopus 로고
    • Human cellular restriction factors that target HIV-1 replication
    • Strebel, K., Luban, J., and Jeang, K. (2009). Human cellular restriction factors that target HIV-1 replication. BMC Med. 7:48. doi: 10.1186/1741-7015-7-48.
    • (2009) BMC Med , vol.7 , pp. 48
    • Strebel, K.1    Luban, J.2    Jeang, K.3
  • 94
    • 84863346515 scopus 로고    scopus 로고
    • Interplay between HIV-1 infection and host microRNAs
    • Sun, G., Li, H., Wu, X., Covarrubias, M., Scherer, L., Meinking, K., et al. (2012). Interplay between HIV-1 infection and host microRNAs. Nucleic Acids Res. 40, 2181-2196. doi: 10.1093/nar/gkr961.
    • (2012) Nucleic Acids Res , vol.40 , pp. 2181-2196
    • Sun, G.1    Li, H.2    Wu, X.3    Covarrubias, M.4    Scherer, L.5    Meinking, K.6
  • 95
    • 59249084325 scopus 로고    scopus 로고
    • miR-198 inhibits HIV-1 gene expression and replication in monocytes and its mechanism of action appears to involve repression of cyclin T1
    • Sung, T.-L., and Rice, A. P. (2009). miR-198 inhibits HIV-1 gene expression and replication in monocytes and its mechanism of action appears to involve repression of cyclin T1. PLoS Pathog. 5:e1000263. doi: 10.1371/journal.ppat.1000263.
    • (2009) PLoS Pathog , vol.5
    • Sung, T.-L.1    Rice, A.P.2
  • 96
    • 84894555049 scopus 로고    scopus 로고
    • MicroRNAs and HIV-1 infection: antiviral activities and beyond
    • Swaminathan, G., Navas-Martín, S., and Martín-García, J. (2014). MicroRNAs and HIV-1 infection: antiviral activities and beyond. J. Mol. Biol. 426, 1178-1197. doi: 10.1016/j.jmb.2013.12.017.
    • (2014) J. Mol. Biol , vol.426 , pp. 1178-1197
    • Swaminathan, G.1    Navas-Martín, S.2    Martín-García, J.3
  • 97
    • 84866923713 scopus 로고    scopus 로고
    • A role for microRNA-155 modulation in the anti-HIV-1 effects of Toll-like receptor 3 stimulation in macrophages
    • Swaminathan, G., Rossi, F., Sierra, L. J., Gupta, A., Navas-Martín, S., and Martín-García, J. (2012). A role for microRNA-155 modulation in the anti-HIV-1 effects of Toll-like receptor 3 stimulation in macrophages. PLoS Pathog. 8:e1002937. doi: 10.1371/journal.ppat.1002937.
    • (2012) PLoS Pathog , vol.8
    • Swaminathan, G.1    Rossi, F.2    Sierra, L.J.3    Gupta, A.4    Navas-Martín, S.5    Martín-García, J.6
  • 98
    • 84879312653 scopus 로고    scopus 로고
    • miRNAs and HIV: unforeseen determinants of host-pathogen interaction
    • Swaminathan, S., Murray, D. D., and Kelleher, A. D. (2013). miRNAs and HIV: unforeseen determinants of host-pathogen interaction. Immunol. Rev. 254, 265-280. doi: 10.1111/imr.12077.
    • (2013) Immunol. Rev , vol.254 , pp. 265-280
    • Swaminathan, S.1    Murray, D.D.2    Kelleher, A.D.3
  • 99
    • 34848893294 scopus 로고    scopus 로고
    • Apoptotic killing of HIV-1-infected macrophages is subverted by the viral envelope glycoprotein
    • Swingler, S., Mann, A. M., Zhou, J., Swingler, C., and Stevenson, M. (2013). Apoptotic killing of HIV-1-infected macrophages is subverted by the viral envelope glycoprotein. PLoS Pathogens 3:1281-1290. doi: 10.1371/journal.ppat.0030134.
    • (2013) PLoS Pathogens , vol.3 , pp. 1281-1290
    • Swingler, S.1    Mann, A.M.2    Zhou, J.3    Swingler, C.4    Stevenson, M.5
  • 100
    • 33947385291 scopus 로고    scopus 로고
    • Suppression of microRNA-silencing pathway by HIV-1 during virus replication
    • Triboulet, R., Mari, B., Lin, Y. L., Chable-Bessia, C., Bennasser, Y., Lebrigand, K., et al. (2007). Suppression of microRNA-silencing pathway by HIV-1 during virus replication. Science 315, 1579-1582. doi: 10.1126/science.1136319.
    • (2007) Science , vol.315 , pp. 1579-1582
    • Triboulet, R.1    Mari, B.2    Lin, Y.L.3    Chable-Bessia, C.4    Bennasser, Y.5    Lebrigand, K.6
  • 101
    • 77952905505 scopus 로고    scopus 로고
    • Most "dark matter" transcripts are associated with known genes
    • van Bakel, H., Nislow, C., Blencowe, B. J., and Hughes, T. R. (2010). Most "dark matter" transcripts are associated with known genes. PLoS Biol. 8:e1000371. doi: 10.1371/journal.pbio.1000371.
    • (2010) PLoS Biol , vol.8
    • van Bakel, H.1    Nislow, C.2    Blencowe, B.J.3    Hughes, T.R.4
  • 102
    • 84864464973 scopus 로고    scopus 로고
    • DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways
    • Vlachos, I. S., Kostoulas, N., Vergoulis, T., Georgakilas, G., Reczko, M., Maragkakis, M., et al. (2012). DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. Nucleic Acids Res. 40, W498-504. doi: 10.1093/nar/gks494.
    • (2012) Nucleic Acids Res , vol.40 , pp. W498-W504
    • Vlachos, I.S.1    Kostoulas, N.2    Vergoulis, T.3    Georgakilas, G.4    Reczko, M.5    Maragkakis, M.6
  • 103
    • 80053045739 scopus 로고    scopus 로고
    • Molecular mechanisms of long noncoding RNAs
    • Wang, K. C., and Chang, H. Y. (2011). Molecular mechanisms of long noncoding RNAs. Mol. Cell 43, 904-914. doi: 10.1016/j.molcel.2011.08.018.
    • (2011) Mol. Cell , vol.43 , pp. 904-914
    • Wang, K.C.1    Chang, H.Y.2
  • 104
    • 79953748673 scopus 로고    scopus 로고
    • A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
    • Wang, K. C., Yang, Y. W., Liu, B., Sanyal, A., Corces-Zimmerman, R., Chen, Y., et al. (2011). A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature 472, 120-124. doi: 10.1038/nature09819.
    • (2011) Nature , vol.472 , pp. 120-124
    • Wang, K.C.1    Yang, Y.W.2    Liu, B.3    Sanyal, A.4    Corces-Zimmerman, R.5    Chen, Y.6
  • 105
    • 60249083292 scopus 로고    scopus 로고
    • Cellular microRNA expression correlates with susceptibility of monocytes/macrophages to HIV-1 infection
    • Wang, X., Ye, L., Hou, W., Zhou, Y., Wang, Y. J., Metzger, D. S., et al. (2009). Cellular microRNA expression correlates with susceptibility of monocytes/macrophages to HIV-1 infection. Blood 113, 671-674. doi: 10.1182/blood-2008-09-175000.
    • (2009) Blood , vol.113 , pp. 671-674
    • Wang, X.1    Ye, L.2    Hou, W.3    Zhou, Y.4    Wang, Y.J.5    Metzger, D.S.6
  • 106
    • 79957840356 scopus 로고    scopus 로고
    • Long noncoding RNAs and human disease
    • Wapinski, O., and Chang, H. Y. (2011). Long noncoding RNAs and human disease. Trends Cell Biol. 21, 354-361. doi: 10.1016/j.tcb.2011.04.001.
    • (2011) Trends Cell Biol , vol.21 , pp. 354-361
    • Wapinski, O.1    Chang, H.Y.2
  • 107
    • 68449092202 scopus 로고    scopus 로고
    • Architecture and secondary structure of an entire HIV-1 RNA genome
    • Watts, J. M., Dang, K. K., Gorelick, R. J., Leonard, C. W., Bess, J. W., Swanstrom, R., et al. (2009). Architecture and secondary structure of an entire HIV-1 RNA genome. Nature 460, 711-716. doi: 10.1038/nature08237.
    • (2009) Nature , vol.460 , pp. 711-716
    • Watts, J.M.1    Dang, K.K.2    Gorelick, R.J.3    Leonard, C.W.4    Bess, J.W.5    Swanstrom, R.6
  • 108
    • 13844320402 scopus 로고    scopus 로고
    • HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome
    • Westerhout, E. M., Ooms, M., Vink, M., Das, A. T., and Berkhout, B. (2005). HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome. Nucleic Acids Res. 33, 796-804. doi: 10.1093/nar/gki220.
    • (2005) Nucleic Acids Res , vol.33 , pp. 796-804
    • Westerhout, E.M.1    Ooms, M.2    Vink, M.3    Das, A.T.4    Berkhout, B.5
  • 109
    • 84880052796 scopus 로고    scopus 로고
    • In-depth analysis of the interaction of HIV-1 with cellular microRNA biogenesis and effector mechanisms
    • Whisnant, A. W., Bogerd, H. P., Flores, O., Ho, P., Powers, J. G., Sharova, N., et al. (2013). In-depth analysis of the interaction of HIV-1 with cellular microRNA biogenesis and effector mechanisms. MBio 4:e000193. doi: 10.1128/mBio.00193-13.
    • (2013) MBio , vol.4
    • Whisnant, A.W.1    Bogerd, H.P.2    Flores, O.3    Ho, P.4    Powers, J.G.5    Sharova, N.6
  • 110
    • 24644481406 scopus 로고    scopus 로고
    • A strategy for probing the function of noncoding RNAs finds a repressor of NFAT
    • Willingham, A. T., Orth, A. P., Batalov, S., Peters, E. C., Wen, B. G., Aza-Blanc, P., et al. (2005). A strategy for probing the function of noncoding RNAs finds a repressor of NFAT. Science 309, 1570-1573. doi: 10.1126/science.1115901.
    • (2005) Science , vol.309 , pp. 1570-1573
    • Willingham, A.T.1    Orth, A.P.2    Batalov, S.3    Peters, E.C.4    Wen, B.G.5    Aza-Blanc, P.6
  • 111
    • 67649671961 scopus 로고    scopus 로고
    • Long noncoding RNAs: functional surprises from the RNA world
    • Wilusz, J. E., Sunwoo, H., and Spector, D. L. (2009). Long noncoding RNAs: functional surprises from the RNA world. Genes Dev. 23, 1494-1504. doi: 10.1101/gad.1800909.
    • (2009) Genes Dev , vol.23 , pp. 1494-1504
    • Wilusz, J.E.1    Sunwoo, H.2    Spector, D.L.3
  • 112
    • 84855570512 scopus 로고    scopus 로고
    • Relationships of PBMC microRNA expression, plasma viral load, and CD4+ T-cell count in HIV-1-infected elite suppressors and viremic patients
    • Witwer, K. W., Watson, A. K., Blankson, J. N., and Clements, J. E. (2012). Relationships of PBMC microRNA expression, plasma viral load, and CD4+ T-cell count in HIV-1-infected elite suppressors and viremic patients. Retrovirology 9:5. doi: 10.1186/1742-4690-9-5.
    • (2012) Retrovirology , vol.9 , pp. 5
    • Witwer, K.W.1    Watson, A.K.2    Blankson, J.N.3    Clements, J.E.4
  • 113
    • 0242300620 scopus 로고    scopus 로고
    • Empirical analysis of transcriptional activity in the Arabidopsis genome
    • Yamada, K., Lim, J., Dale, J. M., Chen, H., Shinn, P., Palm, C. J., et al. (2003). Empirical analysis of transcriptional activity in the Arabidopsis genome. Science 302, 842-846. doi: 10.1126/science.1088305.
    • (2003) Science , vol.302 , pp. 842-846
    • Yamada, K.1    Lim, J.2    Dale, J.M.3    Chen, H.4    Shinn, P.5    Palm, C.J.6
  • 114
  • 116
    • 84859172922 scopus 로고    scopus 로고
    • MiR-217 is involved in Tat-induced HIV-1 long terminal repeat (LTR) transactivation by down-regulation of SIRT1
    • Zhang, H. S., Wu, T. C., Sang, W. W., and Ruan, Z. (2012). MiR-217 is involved in Tat-induced HIV-1 long terminal repeat (LTR) transactivation by down-regulation of SIRT1. Biochim. Biophys. Acta 1823, 1017-1023. doi: 10.1016/j.bbamcr.2012.02.014.
    • (2012) Biochim. Biophys. Acta , vol.1823 , pp. 1017-1023
    • Zhang, H.S.1    Wu, T.C.2    Sang, W.W.3    Ruan, Z.4
  • 117
    • 70349184593 scopus 로고    scopus 로고
    • Resveratrol inhibited Tat-induced HIV-1 LTR transactivation via NAD+-dependent SIRT1 activity
    • Zhang, H. S., Zhou, Y., Wu, M. R., Zhou, H. S., and Xu, F. (2009). Resveratrol inhibited Tat-induced HIV-1 LTR transactivation via NAD+-dependent SIRT1 activity. Life Sci. 85, 484-489. doi: 10.1016/j.lfs.2009.07.014.
    • (2009) Life Sci , vol.85 , pp. 484-489
    • Zhang, H.S.1    Zhou, Y.2    Wu, M.R.3    Zhou, H.S.4    Xu, F.5
  • 118
    • 84874614275 scopus 로고    scopus 로고
    • NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression
    • Zhang, Q., Chen, C. Y., Yedavalli, V. S., and Jeang, K. T. (2013). NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression. MBio 4:e00596-e00612. doi: 10.1128/mBio.00596-12.
    • (2013) MBio , vol.4
    • Zhang, Q.1    Chen, C.Y.2    Yedavalli, V.S.3    Jeang, K.T.4
  • 119
    • 0034707047 scopus 로고    scopus 로고
    • The DNA damage response: putting checkpoints in perspective
    • Zhou, B. B., and Elledge, S. L. (2000). The DNA damage response: putting checkpoints in perspective. Nature 408, 433-439. doi: 10.1038/35044005.
    • (2000) Nature , vol.408 , pp. 433-439
    • Zhou, B.B.1    Elledge, S.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.