-
1
-
-
61449173947
-
Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication
-
Ahluwalia, J. K., Khan, S. Z., Soni, K., Rawat, P., Gupta, A., Hariharan, M., et al. (2008). Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication. Retrovirology 5:117. doi: 10.1186/1742-4690-5-117.
-
(2008)
Retrovirology
, vol.5
, pp. 117
-
-
Ahluwalia, J.K.1
Khan, S.Z.2
Soni, K.3
Rawat, P.4
Gupta, A.5
Hariharan, M.6
-
2
-
-
84883414693
-
The HIV-1 Nef protein binds argonaute-2 and functions as a viral suppressor of RNA interference
-
Aqil, M., Naqvi, A. R., Bano, A. S., and Jameel, S. (2013). The HIV-1 Nef protein binds argonaute-2 and functions as a viral suppressor of RNA interference. PLoS ONE 8:e74472. doi: 10.1371/journal.pone.0074472.
-
(2013)
PLoS ONE
, vol.8
-
-
Aqil, M.1
Naqvi, A.R.2
Bano, A.S.3
Jameel, S.4
-
3
-
-
84921435563
-
The HIV Nef protein modulates cellular and exosomal miRNA profiles in human monocytic cells
-
Aqil, M., Naqvi, A. R., Mallik, S., Bandyopadhyay, S., Maulik, U., and Jameel, S. (2014). The HIV Nef protein modulates cellular and exosomal miRNA profiles in human monocytic cells. J. Extracell. Vesicles 3:23129. doi: 10.3402/jev.v3.23129.
-
(2014)
J. Extracell. Vesicles
, vol.3
, pp. 23129
-
-
Aqil, M.1
Naqvi, A.R.2
Mallik, S.3
Bandyopadhyay, S.4
Maulik, U.5
Jameel, S.6
-
4
-
-
77956820913
-
The effect of clade-specific sequence polymorphisms on HIV-1 protease activity and inhibitor resistance pathways
-
Bandaranayake, R. M., Kolli, M., King, N. M., Nalivaika, E. A., Heroux, A., Kakizawa, J., et al. (2010). The effect of clade-specific sequence polymorphisms on HIV-1 protease activity and inhibitor resistance pathways. J. Virol. 84, 9995-10003. doi: 10.1128/JVI.00505-10.
-
(2010)
J. Virol
, vol.84
, pp. 9995-10003
-
-
Bandaranayake, R.M.1
Kolli, M.2
King, N.M.3
Nalivaika, E.A.4
Heroux, A.5
Kakizawa, J.6
-
5
-
-
68149171901
-
Computational challenges in miRNA target predictions: to be or not to be a true target?
-
803069
-
Barbato, C., Arisi, I., Frizzo, M. E., Brandi, R., Da Sacco, L., and Masotti, A. (2009). Computational challenges in miRNA target predictions: to be or not to be a true target? J. Biomed. Biotechnol. 2009:803069. doi: 10.1155/2009/803069.
-
(2009)
J. Biomed. Biotechnol
, vol.2009
-
-
Barbato, C.1
Arisi, I.2
Frizzo, M.E.3
Brandi, R.4
Da Sacco, L.5
Masotti, A.6
-
6
-
-
19344370167
-
Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing
-
Bennasser, Y., Le, S. Y., Benikrane, M., and Jeang, K. T. (2005). Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing. Immunity 22, 607-619. doi: 10.1016/j.immuni.2005.03.010.
-
(2005)
Immunity
, vol.22
, pp. 607-619
-
-
Bennasser, Y.1
Le, S.Y.2
Benikrane, M.3
Jeang, K.T.4
-
7
-
-
73549099347
-
Effector mechanisms in HIV-1 infected elite controllers: highly active immune responses?
-
Blankson, J. N. (2010). Effector mechanisms in HIV-1 infected elite controllers: highly active immune responses? Antiviral Res. 85, 295-302. doi: 10.1016/j.antiviral.2009.08.007.
-
(2010)
Antiviral Res
, vol.85
, pp. 295-302
-
-
Blankson, J.N.1
-
8
-
-
0025961771
-
A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome
-
Brown, C. J., Ballabio, A., Rupert, J. L., Lafreniere, R. G., Grompe, M., Tonlorenzi, R., et al. (1991). A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome. Nature 349, 38-44. doi: 10.1038/349038a0.
-
(1991)
Nature
, vol.349
, pp. 38-44
-
-
Brown, C.J.1
Ballabio, A.2
Rupert, J.L.3
Lafreniere, R.G.4
Grompe, M.5
Tonlorenzi, R.6
-
9
-
-
77956271694
-
Lentivirus-associated MAPK/ERK2 phosphorylates EMD and regulates infectivity
-
Bukong, T. N., Hall, W. W., and Jacque, J. M. (2010). Lentivirus-associated MAPK/ERK2 phosphorylates EMD and regulates infectivity. J. Gen. Virol. 91, 2381-2392. doi: 10.1099/vir.0.019604-0.
-
(2010)
J. Gen. Virol
, vol.91
, pp. 2381-2392
-
-
Bukong, T.N.1
Hall, W.W.2
Jacque, J.M.3
-
10
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili, M. N., Trapnell, C., Goff, L., Koziol, M., Tazon-Vega, B., Regev, A., et al. (2011). Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 25, 1915-1927. doi: 10.1101/gad.17446611.
-
(2011)
Genes Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
Koziol, M.4
Tazon-Vega, B.5
Regev, A.6
-
11
-
-
84897128298
-
The noncoding RNA revolution-trashing old rules to forge new ones
-
Cech, T. R., and Steitz, J. A. (2014). The noncoding RNA revolution-trashing old rules to forge new ones. Cell 157, 77-94. doi: 10.1016/j.cell.2014.03.008.
-
(2014)
Cell
, vol.157
, pp. 77-94
-
-
Cech, T.R.1
Steitz, J.A.2
-
12
-
-
84863630580
-
Polar opposites: ERK direction of CD4 T cell subsets
-
Chang, C. F., D'Souza, W. N., Chen, I. L., Pages, G., Pouyssegur, J., and Hedrick, S. M. (2012). Polar opposites: ERK direction of CD4 T cell subsets. J. Immunol. 189, 721-731. doi: 10.4049/jimmunol.1103015.
-
(2012)
J. Immunol
, vol.189
, pp. 721-731
-
-
Chang, C.F.1
D'Souza, W.N.2
Chen, I.L.3
Pages, G.4
Pouyssegur, J.5
Hedrick, S.M.6
-
13
-
-
0035282334
-
Mammalian MAP kinase signalling cascades
-
Chang, L., and Karin, M. (2001). Mammalian MAP kinase signalling cascades. Nature 410, 37-40. doi: 10.1038/35065000.
-
(2001)
Nature
, vol.410
, pp. 37-40
-
-
Chang, L.1
Karin, M.2
-
14
-
-
84874589177
-
Next-generation sequencing of small RNAs from HIV-infected cells identifies phased microRNA expression patterns and candidate novel microRNAs differentially expressed upon infection
-
Chang, S. T., Thomas, M. J., Sova, P., Green, R. R., Palermo, R. E., and Katze, M. G. (2013). Next-generation sequencing of small RNAs from HIV-infected cells identifies phased microRNA expression patterns and candidate novel microRNAs differentially expressed upon infection. MBio 4:e00549-e00612. doi: 10.1128/mBio.00549-12.
-
(2013)
MBio
, vol.4
-
-
Chang, S.T.1
Thomas, M.J.2
Sova, P.3
Green, R.R.4
Palermo, R.E.5
Katze, M.G.6
-
15
-
-
84903743538
-
MicroRNA binding to the HIV-1 Gag protein inhibits Gag assembly and virus production
-
Chen, A. K., Sengupta, P., Waki, K., Van Engelenburg, S. B., Ochiya, T., Ablan, S. D., et al. (2014). MicroRNA binding to the HIV-1 Gag protein inhibits Gag assembly and virus production. Proc. Natl. Acad. Sci. U.S.A. 111, E2676-E2683. doi: 10.1073/pnas.1408037111.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A
, vol.111
, pp. E2676-E2683
-
-
Chen, A.K.1
Sengupta, P.2
Waki, K.3
Van Engelenburg, S.B.4
Ochiya, T.5
Ablan, S.D.6
-
16
-
-
84875248780
-
miR-132 enhances HIV-1 replication
-
Chiang, K., Liu, H., and Rice, A. (2013). miR-132 enhances HIV-1 replication. Virology 438, 1-4. doi: 10.1016/j.virol.2012.12.016.
-
(2013)
Virology
, vol.438
, pp. 1-4
-
-
Chiang, K.1
Liu, H.2
Rice, A.3
-
17
-
-
77957796766
-
Absence of DICER in monocytes and its regulation by HIV-1
-
Coley, W., Van Duyne, R., Carpio, L., Guendel, I., Kehn-Hall, K., Chevalier, S., et al. (2010). Absence of DICER in monocytes and its regulation by HIV-1. J. Biol. Chem. 285, 31930-31943. doi: 10.1074/jbc. M110.101709.
-
(2010)
J. Biol. Chem
, vol.285
, pp. 31930-31943
-
-
Coley, W.1
Van Duyne, R.2
Carpio, L.3
Guendel, I.4
Kehn-Hall, K.5
Chevalier, S.6
-
18
-
-
84879422443
-
HIV-1 causes CD4 cell death through DNA-dependent protein kinase during viral integration
-
Cooper, A., Garcia, M., Petrovas, C., Yamamoto, T., Koup, R. A., and Nabel, G. J. (2013). HIV-1 causes CD4 cell death through DNA-dependent protein kinase during viral integration. Nature 498, 376-380. doi: 10.1038/nature12274.
-
(2013)
Nature
, vol.498
, pp. 376-380
-
-
Cooper, A.1
Garcia, M.2
Petrovas, C.3
Yamamoto, T.4
Koup, R.A.5
Nabel, G.J.6
-
20
-
-
77951972792
-
Regulation of microRNA biogenesis: a miRiad of mechanisms
-
Davis, B. N., and Hata, A. (2009). Regulation of microRNA biogenesis: a miRiad of mechanisms. Cell Commun. Signal. 7:18. doi: 10.1186/1478-811X-7-18.
-
(2009)
Cell Commun. Signal
, vol.7
, pp. 18
-
-
Davis, B.N.1
Hata, A.2
-
21
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNA: analysis if their gene structure, evolution, and expression
-
Derrien, T., Johnson, R., Bussotti, G., Tanzer, A., Djebali, S., Tilgner, H., et al. (2012). The GENCODE v7 catalog of human long noncoding RNA: analysis if their gene structure, evolution, and expression. Genome Res. 22, 1775-1789. doi: 10.1101/gr.132159.111.
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
-
22
-
-
48949089963
-
Direct and indirect roles of viral suppressors of RNA silencing in pathogenesis
-
Diaz-Pendon, J. A., and Ding, S. W. (2008). Direct and indirect roles of viral suppressors of RNA silencing in pathogenesis. Annu. Rev. Phytopathol. 46, 303-326. doi: 10.1146/annurev.phyto.46.081407.104746.
-
(2008)
Annu. Rev. Phytopathol
, vol.46
, pp. 303-326
-
-
Diaz-Pendon, J.A.1
Ding, S.W.2
-
23
-
-
84901954135
-
LincRNA-p21 activates p21 in cis to promote polycomb target gene expression and to enforce the G1/S checkpoint
-
Dimitrova, N., Zamudio, J. R., Jong, R. M., Soukup, D., Resnick, R., Sarma, K., et al. (2014). LincRNA-p21 activates p21 in cis to promote polycomb target gene expression and to enforce the G1/S checkpoint. Mol. Cell 54, 777-790. doi: 10.1016/j.molcel.2014.04.025.
-
(2014)
Mol. Cell
, vol.54
, pp. 777-790
-
-
Dimitrova, N.1
Zamudio, J.R.2
Jong, R.M.3
Soukup, D.4
Resnick, R.5
Sarma, K.6
-
24
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali, S., Davis, C. A., Merkel, A., Dobin, A., Lassmann, T., Mortazavi, A., et al. (2012). Landscape of transcription in human cells. Nature 489, 101-108. doi: 10.1038/nature11233.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
-
25
-
-
79251480064
-
Abortive HIV-1 infection mediates CD4 T cell depletion and inflammation in human lymphoid tissue
-
Doitsh, G., Cavrois, M., Lassen, K. G., Zepeda, O., Yang, Z., Santiago, M. L., et al. (2010). Abortive HIV-1 infection mediates CD4 T cell depletion and inflammation in human lymphoid tissue. Cell 143, 789-801. doi: 10.1016/j.cell.2010.11.001.
-
(2010)
Cell
, vol.143
, pp. 789-801
-
-
Doitsh, G.1
Cavrois, M.2
Lassen, K.G.3
Zepeda, O.4
Yang, Z.5
Santiago, M.L.6
-
26
-
-
0035942736
-
Duplexes of 21± nucleotide RNAs mediate RNA interference in cultured mammalian cells
-
Elbashir, S. M., Harborth, J., Lendecke, W., Yalcin, A., Weber, K., Tuschl, T., et al. (2001). Duplexes of 21± nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411, 494-498. doi: 10.1038/35078107.
-
(2001)
Nature
, vol.411
, pp. 494-498
-
-
Elbashir, S.M.1
Harborth, J.2
Lendecke, W.3
Yalcin, A.4
Weber, K.5
Tuschl, T.6
-
27
-
-
60649103811
-
MDM2-dependent downregulation of p21 and hnRNP K provides a switch between apoptosis and growth arrest induced by pharmacologically activated p53
-
Enge, M., Bao, W., Hedstom, E., Jackson, S. P., Moumen, A., and Selivanova, G. (2009). MDM2-dependent downregulation of p21 and hnRNP K provides a switch between apoptosis and growth arrest induced by pharmacologically activated p53. Cancer Cell 15, 171-183. doi: 10.1016/j.ccr.2009.01.019.
-
(2009)
Cancer Cell
, vol.15
, pp. 171-183
-
-
Enge, M.1
Bao, W.2
Hedstom, E.3
Jackson, S.P.4
Moumen, A.5
Selivanova, G.6
-
28
-
-
0032545933
-
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
-
Fire, A., Xu, S., Montgomery, M. K., Kostas, S. A., Driver, S. E., and Mello, C. C. (1998). Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391, 806-811. doi: 10.1038/35888.
-
(1998)
Nature
, vol.391
, pp. 806-811
-
-
Fire, A.1
Xu, S.2
Montgomery, M.K.3
Kostas, S.A.4
Driver, S.E.5
Mello, C.C.6
-
29
-
-
26644459229
-
The role of ERK1 and ERK2 in multiple stages of T cell development
-
Fischer, A. M., Katayama, C. D., Pages, G., Pouyssegur, J., and Hedrick, S. M. (2005). The role of ERK1 and ERK2 in multiple stages of T cell development. Immunity 23, 431-443. doi: 10.1016/j.immuni.2005.08.013.
-
(2005)
Immunity
, vol.23
, pp. 431-443
-
-
Fischer, A.M.1
Katayama, C.D.2
Pages, G.3
Pouyssegur, J.4
Hedrick, S.M.5
-
30
-
-
84860362829
-
Active chromatin and noncoding RNAs: an intimate relationship
-
Flynn, R. A., and Chang, H. Y. (2012). Active chromatin and noncoding RNAs: an intimate relationship. Curr. Opin. Genet. Dev. 22, 172-178. doi: 10.1016/j.gde.2011.11.002.
-
(2012)
Curr. Opin. Genet. Dev
, vol.22
, pp. 172-178
-
-
Flynn, R.A.1
Chang, H.Y.2
-
31
-
-
60149095444
-
Most mammalian mRNAs are conserved targets of microRNAs
-
Friedman, R. C., Farh, K. K., Burge, C. B., and Bartel, D. P. (2009). Most mammalian mRNAs are conserved targets of microRNAs. Genome Res. 19, 92-105. doi: 10.1101/gr.082701.108.
-
(2009)
Genome Res
, vol.19
, pp. 92-105
-
-
Friedman, R.C.1
Farh, K.K.2
Burge, C.B.3
Bartel, D.P.4
-
32
-
-
79960883949
-
Comparative expression profile of miRNA and mRNA in primary peripheral blood mononuclear cells infected with human immunodeficiency virus (HIV-1)
-
Gupta, A., Nagilla, P., Le, H.-S. S., Bunney, C., Zych, C., Thalamuthu, A., et al. (2011). Comparative expression profile of miRNA and mRNA in primary peripheral blood mononuclear cells infected with human immunodeficiency virus (HIV-1). PLoS ONE 6:e22730. doi: 10.1371/journal.pone.0022730.
-
(2011)
PLoS ONE
, vol.6
-
-
Gupta, A.1
Nagilla, P.2
Le, H.-S.S.3
Bunney, C.4
Zych, C.5
Thalamuthu, A.6
-
33
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman, M., Amit, I., Garber, M., French, C., Lin, M. F., Feldser, D., et al. (2009). Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458, 223-227. doi: 10.1038/nature07672.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
-
34
-
-
84857066786
-
Modular regulatory principles of large non-coding RNAs
-
Guttman, M., and Rinn, J. L. (2012). Modular regulatory principles of large non-coding RNAs. Nature 482, 339-346. doi: 10.1038/nature10887.
-
(2012)
Nature
, vol.482
, pp. 339-346
-
-
Guttman, M.1
Rinn, J.L.2
-
35
-
-
27144550559
-
TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing
-
Haase, A. D., Jaskiewicz, L., Zhang, H., Laine, S., Sack, R., Gatignol, A., et al. (2005). TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing. EMBO Rep. 6, 961-967. doi: 10.1038/sj.embor.7400509.
-
(2005)
EMBO Rep
, vol.6
, pp. 961-967
-
-
Haase, A.D.1
Jaskiewicz, L.2
Zhang, H.3
Laine, S.4
Sack, R.5
Gatignol, A.6
-
36
-
-
0035095885
-
ERK phosphorylation drives cytoplasmic accumulation of hnRNP-K and inhibition of mRNA translation
-
Habelhah, H., Shah, K., Huang, L., Ostareck-Lederer, A., Burlingame, A. L., Shokat, K. M., et al. (2001). ERK phosphorylation drives cytoplasmic accumulation of hnRNP-K and inhibition of mRNA translation. Nat. Cell Biol. 3, 325-330. doi: 10.1038/35060131.
-
(2001)
Nat. Cell Biol
, vol.3
, pp. 325-330
-
-
Habelhah, H.1
Shah, K.2
Huang, L.3
Ostareck-Lederer, A.4
Burlingame, A.L.5
Shokat, K.M.6
-
37
-
-
27144558619
-
Targets for human encoded microRNAs in HIV genes
-
Hariharan, M., Scaria, V., Pillai, B., and Brahmachari, S. K. (2005). Targets for human encoded microRNAs in HIV genes. Biochem. Biophys. Res. Commun. 337, 1214-1218. doi: 10.1016/j.bbrc.2005.09.183.
-
(2005)
Biochem. Biophys. Res. Commun
, vol.337
, pp. 1214-1218
-
-
Hariharan, M.1
Scaria, V.2
Pillai, B.3
Brahmachari, S.K.4
-
38
-
-
70350088548
-
Mechanisms of double-strand break repair in somatic mammalian cells
-
Hartlerode, A. J., and Scully, R. (2009). Mechanisms of double-strand break repair in somatic mammalian cells. Biochem. J. 423, 157-168. doi: 10.1042/BJ20090942.
-
(2009)
Biochem. J
, vol.423
, pp. 157-168
-
-
Hartlerode, A.J.1
Scully, R.2
-
39
-
-
79955794490
-
Tat RNA silencing suppressor activity contributes to perturbation of lymphocyte miRNA by HIV-1
-
Hayes, A. M., Qian, S., Yu, L., and Boris-Lawrie, K. (2011). Tat RNA silencing suppressor activity contributes to perturbation of lymphocyte miRNA by HIV-1. Retrovirology 8:36. doi: 10.1091/mbc. E13-09-0558.
-
(2011)
Retrovirology
, vol.8
, pp. 36
-
-
Hayes, A.M.1
Qian, S.2
Yu, L.3
Boris-Lawrie, K.4
-
40
-
-
84891800602
-
NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies
-
Hirose, T., Virnicchi, G., Tanigawa, A., Naganuma, T., Li, R., Kimura, H., et al. (2014). NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies. Mol. Biol. Cell 25, 169-183. doi: 10.1186/1742-4690-5-118.
-
(2014)
Mol. Biol. Cell
, vol.25
, pp. 169-183
-
-
Hirose, T.1
Virnicchi, G.2
Tanigawa, A.3
Naganuma, T.4
Li, R.5
Kimura, H.6
-
41
-
-
84870342928
-
The extent of sequence complementarity correlates with the potency of cellular miRNA-mediated restriction of HIV-1
-
Houzet, L., Klase, Z., Yeung, M. L., Wu, A., Le, S.-Y., Quiñones, M., et al. (2012). The extent of sequence complementarity correlates with the potency of cellular miRNA-mediated restriction of HIV-1. Nucleic Acids Res. 40, 11684-11696. doi: 10.1093/nar/gks912.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 11684-11696
-
-
Houzet, L.1
Klase, Z.2
Yeung, M.L.3
Wu, A.4
Le, S.-Y.5
Quiñones, M.6
-
42
-
-
61349100846
-
MicroRNA profile changes in human immunodeficiency virus type 1 (HIV-1) seropositive individuals
-
Houzet, L., Yeung, M. L., de Lame, V., Desai, D., Smith, S. M., and Jeang, K. T. (2008). MicroRNA profile changes in human immunodeficiency virus type 1 (HIV-1) seropositive individuals. Retrovirology 5:118. doi: 10.1038/nm1639.
-
(2008)
Retrovirology
, vol.5
, pp. 118
-
-
Houzet, L.1
Yeung, M.L.2
de Lame, V.3
Desai, D.4
Smith, S.M.5
Jeang, K.T.6
-
43
-
-
34948817683
-
Cellular microRNAs contribute to HIV-1 latency in resting primary CD4+ T lymphocytes
-
Huang, J., Wang, F., Argyris, E., Chen, K., Liang, Z., Tian, H., et al. (2007). Cellular microRNAs contribute to HIV-1 latency in resting primary CD4+ T lymphocytes. Nat. Med. 13, 1241-1247. doi: 10.1016/j.cell.2010.06.040.
-
(2007)
Nat. Med
, vol.13
, pp. 1241-1247
-
-
Huang, J.1
Wang, F.2
Argyris, E.3
Chen, K.4
Liang, Z.5
Tian, H.6
-
44
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
Huarte, M., Guttman, M., Feldser, D., Garber, M., Koziol, M. J., Kenzelmann-Broz, D., et al. (2010). A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 142, 409-419. doi: 10.1016/j.cell.2010.06.040.
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
Garber, M.4
Koziol, M.J.5
Kenzelmann-Broz, D.6
-
46
-
-
36148958682
-
MicroRNAs in cell proliferation, cell death, and tumorigenesis
-
Hwang, H. Q., and Mendell, J. T. (2007). MicroRNAs in cell proliferation, cell death, and tumorigenesis. Br. J. Cancer 96, R40-R44. doi: 10.1016/j.molcel.2014.01.009.
-
(2007)
Br. J. Cancer
, vol.96
, pp. R40-R44
-
-
Hwang, H.Q.1
Mendell, J.T.2
-
47
-
-
84893452948
-
Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli
-
Imamura, K., Imamachi, N., Akizuki, G., Kumakura, M., Kawaguchi, A., Nagata, K., et al. (2014). Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli. Mol. Cell 53, 393-406. doi: 10.1016/j.molcel.2014.01.009.
-
(2014)
Mol. Cell
, vol.53
, pp. 393-406
-
-
Imamura, K.1
Imamachi, N.2
Akizuki, G.3
Kumakura, M.4
Kawaguchi, A.5
Nagata, K.6
-
48
-
-
70350504453
-
The DNA damage response in human biology and disease
-
Jackson, S. P., and Bartek, J. (2009). The DNA damage response in human biology and disease. Nature 461, 1071-1078. doi: 10.1038/nature08467.
-
(2009)
Nature
, vol.461
, pp. 1071-1078
-
-
Jackson, S.P.1
Bartek, J.2
-
49
-
-
0032079658
-
Modulation of HIV-1 infectivity by MAPK, a virion-associated kinase
-
Jacque, J. M., Mann, A., Enslen, H., Sharova, N., Brichacek, B., Davis, R. J., et al. (1998). Modulation of HIV-1 infectivity by MAPK, a virion-associated kinase. EMBO J. 17, 2607-2618. doi: 10.1093/emboj/17.9.2607.
-
(1998)
EMBO J
, vol.17
, pp. 2607-2618
-
-
Jacque, J.M.1
Mann, A.2
Enslen, H.3
Sharova, N.4
Brichacek, B.5
Davis, R.J.6
-
50
-
-
84885058930
-
Antiretorviral therapy initiated within 6 months of HIV infection is associated with lower T-cell activation and smaller HIV reservoir size
-
Jain, V., Hartogensis, W., Bacchetti, P., Hunt, P. W., Hatano, H., Sinclair, E., et al. (2013). Antiretorviral therapy initiated within 6 months of HIV infection is associated with lower T-cell activation and smaller HIV reservoir size. J. Infect. Dis. 208, 1202-1211. doi: 10.1093/infdis/jit311.
-
(2013)
J. Infect. Dis
, vol.208
, pp. 1202-1211
-
-
Jain, V.1
Hartogensis, W.2
Bacchetti, P.3
Hunt, P.W.4
Hatano, H.5
Sinclair, E.6
-
51
-
-
77955110979
-
Genome-wide computational identification and manual annotation of human long noncoding RNA genes
-
Jia, H., Osak, M., Bogu, G. K., Stanton, L. W., Johnson, R., and Lipovich, L. (2010). Genome-wide computational identification and manual annotation of human long noncoding RNA genes. RNA 16, 1478-1487. doi: 10.1261/rna.1951310.
-
(2010)
RNA
, vol.16
, pp. 1478-1487
-
-
Jia, H.1
Osak, M.2
Bogu, G.K.3
Stanton, L.W.4
Johnson, R.5
Lipovich, L.6
-
52
-
-
24644483623
-
Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA
-
Jopling, C. L., Yi, M., Lancaster, A. M., Lemon, S. M., and Sarnow, P. (2005). Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA. Science 309, 1577-1581. doi: 10.1126/science.1113329.
-
(2005)
Science
, vol.309
, pp. 1577-1581
-
-
Jopling, C.L.1
Yi, M.2
Lancaster, A.M.3
Lemon, S.M.4
Sarnow, P.5
-
53
-
-
73149122533
-
Imaging the interaction of HIV-1 genomes and Gag during assembly of individual viral particles
-
Jouvenet, N., Simon, S. M., and Bieniasz, P. D. (2009). Imaging the interaction of HIV-1 genomes and Gag during assembly of individual viral particles. Proc. Natl. Acad. Sci. U.S.A. 106, 19114-19119. doi: 10.1073/pnas.0907364106.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 19114-19119
-
-
Jouvenet, N.1
Simon, S.M.2
Bieniasz, P.D.3
-
54
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
Khalil, A. M., Guttman, M., Huarte, M., Garber, M., Raj, A., Rivea Morales, D., et al. (2009). Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc. Natl. Acad. Sci. U.S.A. 106, 11667-11672. doi: 10.1073/pnas.0904715106.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Rivea Morales, D.6
-
55
-
-
0035093737
-
DNA double-strand breaks: signalling, repair and the cancer connection
-
Khanna, K. K., and Jackson, S. P. (2001). DNA double-strand breaks: signalling, repair and the cancer connection. Nat. Genet. 27, 247-254. doi: 10.1038/85798.
-
(2001)
Nat. Genet
, vol.27
, pp. 247-254
-
-
Khanna, K.K.1
Jackson, S.P.2
-
56
-
-
84870378445
-
MicroRNAs and HIV-1: complex interactions
-
Klase, Z., Houzet, L., and Jeang, K.-T. T. (2012). MicroRNAs and HIV-1: complex interactions. J. Biol. Chem. 287, 40884-40890. doi: 10.1074/jbc. R112.415448.
-
(2012)
J. Biol. Chem
, vol.287
, pp. 40884-40890
-
-
Klase, Z.1
Houzet, L.2
Jeang, K.-T.T.3
-
57
-
-
84878451215
-
Gene regulation by the act of long non-coding RNA transcription
-
Kornienko, A. E., Guenzl, P. M., Barlow, D. P., and Pauler, F. M. (2013). Gene regulation by the act of long non-coding RNA transcription. BMC Biol. 11:59. doi: 10.1186/1741-7007-11-59.
-
(2013)
BMC Biol
, vol.11
, pp. 59
-
-
Kornienko, A.E.1
Guenzl, P.M.2
Barlow, D.P.3
Pauler, F.M.4
-
58
-
-
84891818318
-
miRBase: annotating high confidence miRNAs using deep sequencing data
-
Kozomara, A., and Griffiths-Jones, S. (2014). miRBase: annotating high confidence miRNAs using deep sequencing data. Nucleic Acids Res. 42, D68-D73. doi: 10.1093/nar/gkt1181.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D68-D73
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
59
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee, R. C., Feinbaum, R. L., and Ambros, V. (1993). The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75, 843-854. doi: 10.1016/0092-8674(93)90529-Y.
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
60
-
-
71849085384
-
HIV Nef is secreted in exosomes and triggers apoptosis in bystander CD4+ T cells
-
1100122
-
Lenassi, M., Cagney, G., Liao, M., Vaupotic, T., Bartholomeeusen, K., Cheng, Y., et al. (2010). HIV Nef is secreted in exosomes and triggers apoptosis in bystander CD4+ T cells. Traffic 11:1100122. doi: 10.1111/j.1600-0854.2009.01006.x.
-
(2010)
Traffic
, vol.11
-
-
Lenassi, M.1
Cagney, G.2
Liao, M.3
Vaupotic, T.4
Bartholomeeusen, K.5
Cheng, Y.6
-
61
-
-
33750361188
-
Virus counterdefense: diverse strategies for evading the RNA-silencing immunity
-
Li, F., and Ding, S. W. (2006). Virus counterdefense: diverse strategies for evading the RNA-silencing immunity. Annu. Rev. Microbiol. 60, 503-531. doi: 10.1146/annurev.micro.60.080805.142205.
-
(2006)
Annu. Rev. Microbiol
, vol.60
, pp. 503-531
-
-
Li, F.1
Ding, S.W.2
-
62
-
-
84925604110
-
Regulation of HIV-1 latency by chromatin structure and nuclear architecture
-
[Epub ahead of print]
-
Lusic, M., and Giacca, M. (2014). Regulation of HIV-1 latency by chromatin structure and nuclear architecture. J. Mol. Biol. doi: 10.1016/j.jmb.2014.07.022 [Epub ahead of print].
-
(2014)
J. Mol. Biol
-
-
Lusic, M.1
Giacca, M.2
-
63
-
-
84903287333
-
miRNA-1236 inhibits HIV-1 infection of monocytes by repressing translation of cellular factor VprBP
-
Ma, L., Shen, C. J., Cohen, É.A., Xiong, S. D., and Wang, J. H. (2014). miRNA-1236 inhibits HIV-1 infection of monocytes by repressing translation of cellular factor VprBP. PLoS ONE 9:e99535. doi: 10.1371/journal.pone.0099535.
-
(2014)
PLoS ONE
, vol.9
-
-
Ma, L.1
Shen, C.J.2
Cohen, É.A.3
Xiong, S.D.4
Wang, J.H.5
-
64
-
-
77949264933
-
Concerted action of cellular JNK and Pin1 restricts HIV-1 genome integration to activated CD4+ T lymphocytes
-
Manganaro, L., Lusic, M., Gutierrez, M. I., Cereseto, A., Del Sal, G., and Giacca, M. (2010). Concerted action of cellular JNK and Pin1 restricts HIV-1 genome integration to activated CD4+ T lymphocytes. Nat. Med. 16, 329-333. doi: 10.1038/nm.2102.
-
(2010)
Nat. Med
, vol.16
, pp. 329-333
-
-
Manganaro, L.1
Lusic, M.2
Gutierrez, M.I.3
Cereseto, A.4
Del Sal, G.5
Giacca, M.6
-
65
-
-
79960622503
-
Biogenesis and function of nuclear bodies
-
Mao, Y. S., Zhang, B., and Spector, D. L. (2011). Biogenesis and function of nuclear bodies. Trends Genet. 27, 295-306. doi: 10.1016/j.tig.2011.05.006.
-
(2011)
Trends Genet
, vol.27
, pp. 295-306
-
-
Mao, Y.S.1
Zhang, B.2
Spector, D.L.3
-
66
-
-
76249108851
-
Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness
-
Marques, A. C., and Ponting, C. P. (2009). Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness. Genome Biol. 10:R124. doi: 10.1186/gb-2009-10-11-r124.
-
(2009)
Genome Biol
, vol.10
, pp. R124
-
-
Marques, A.C.1
Ponting, C.P.2
-
67
-
-
3242883729
-
The p53 response to DNA damage
-
Meek, D. W. (2004). The p53 response to DNA damage. DNA Repair 3, 1049-1056. doi: 10.1016/j.dnarep.2004.03.027.
-
(2004)
DNA Repair
, vol.3
, pp. 1049-1056
-
-
Meek, D.W.1
-
68
-
-
77954231525
-
Characterisation of the RNA content of chromatin
-
Mondal, T., Rasmussen, M., Pandey, G. K., Isaksson, A., and Kanduri, C. (2010). Characterisation of the RNA content of chromatin. Genome Res. 20, 899-907. doi: 10.1101/gr.103473.109.
-
(2010)
Genome Res
, vol.20
, pp. 899-907
-
-
Mondal, T.1
Rasmussen, M.2
Pandey, G.K.3
Isaksson, A.4
Kanduri, C.5
-
69
-
-
28944446040
-
hnRNP K: an HDM2 target and transcriptional coactivator of p53 in response to DNA damage
-
Moumen, A., Masterson, P., O'Connor, M. J., and Jackson, S. P. (2005). hnRNP K: an HDM2 target and transcriptional coactivator of p53 in response to DNA damage. Cell 123, 1065-1078. doi: 10.1016/j.cell.2005.09.032.
-
(2005)
Cell
, vol.123
, pp. 1065-1078
-
-
Moumen, A.1
Masterson, P.2
O'Connor, M.J.3
Jackson, S.P.4
-
70
-
-
0035942236
-
RNA is a structural element in retrovirus particles
-
Muriaux, D., Mirro, J., Harvin, D., and Rein, A. (2001). RNA is a structural element in retrovirus particles. Proc. Natl. Acad. Sci. U.S.A. 98, 5246-5251. doi: 10.1073/pnas.091000398.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A
, vol.98
, pp. 5246-5251
-
-
Muriaux, D.1
Mirro, J.2
Harvin, D.3
Rein, A.4
-
71
-
-
79953858658
-
No-nonsense functions for long noncoding RNAs
-
Nagano, T., and Fraser, P. (2011). No-nonsense functions for long noncoding RNAs. Cell 145, 178-181. doi: 10.1016/j.cell.2011.03.014.
-
(2011)
Cell
, vol.145
, pp. 178-181
-
-
Nagano, T.1
Fraser, P.2
-
72
-
-
77957243921
-
Long noncoding RNAs with enhancer-like function in human cells
-
Ørom, U. A., Derrien, T., Beringer, M., Gumireddy, K., Gardini, A., Bussotti, G., et al. (2010). Long noncoding RNAs with enhancer-like function in human cells. Cell 143, 46-58. doi: 10.1016/j.cell.2011.03.014.
-
(2010)
Cell
, vol.143
, pp. 46-58
-
-
Ørom, U.A.1
Derrien, T.2
Beringer, M.3
Gumireddy, K.4
Gardini, A.5
Bussotti, G.6
-
73
-
-
54049138948
-
Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
-
Pandey, R. R., Mondal, T., Mohammad, F., Enroth, S., Redrup, L., Komorowski, J., et al. (2008). Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Mol. Cell 32, 232-246. doi: 10.1016/j.cell.2010.09.001.
-
(2008)
Mol. Cell
, vol.32
, pp. 232-246
-
-
Pandey, R.R.1
Mondal, T.2
Mohammad, F.3
Enroth, S.4
Redrup, L.5
Komorowski, J.6
-
74
-
-
0039701522
-
Full peptide synthesis, purification, and characterization of six Tat variants. Differences observed between HIV-1 isolates from Africa and other continents
-
Péloponése, J. M. Jr., Collette, Y., Grégoire, C., Bailly, C., Campèse, D., Meurs, E. F., et al. (1999). Full peptide synthesis, purification, and characterization of six Tat variants. Differences observed between HIV-1 isolates from Africa and other continents. J. Biol. Chem. 274, 11473-11478. doi: 10.1074/jbc.274.17.11473.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 11473-11478
-
-
Péloponése, J.M.1
Collette, Y.2
Grégoire, C.3
Bailly, C.4
Campèse, D.5
Meurs, E.F.6
-
75
-
-
0030026001
-
Requirement for Xist in X chromosome inactivation
-
Penny, G. D., Kay, G. F., Sheardown, S. A., Rastan, S., and Brockdorff, N. (1996). Requirement for Xist in X chromosome inactivation. Nature 379, 131-137. doi: 10.1038/379131a0.
-
(1996)
Nature
, vol.379
, pp. 131-137
-
-
Penny, G.D.1
Kay, G.F.2
Sheardown, S.A.3
Rastan, S.4
Brockdorff, N.5
-
76
-
-
70149123708
-
Genomic and transcriptional co-localisation of protein-coding and long non-coding RNA pairs in the developing brain
-
Ponjavic, J., Oliver, P. L., Lunter, G., and Ponting, C. P. (2009). Genomic and transcriptional co-localisation of protein-coding and long non-coding RNA pairs in the developing brain. PLoS Genet. 5:e1000617. doi: 10.1371/journal.pgen.1000617.
-
(2009)
PLoS Genet
, vol.5
-
-
Ponjavic, J.1
Oliver, P.L.2
Lunter, G.3
Ponting, C.P.4
-
77
-
-
49949090861
-
The functional repertoires of metazoan genomes
-
Ponting, C. P. (2008). The functional repertoires of metazoan genomes. Nat. Rev. Genet. 9, 689-698. doi: 10.1038/nrg2413.
-
(2008)
Nat. Rev. Genet
, vol.9
, pp. 689-698
-
-
Ponting, C.P.1
-
78
-
-
78651481549
-
Transcribed dark matter: meaning or myth?
-
Ponting, C. P., and Belgard, T. G. (2010). Transcribed dark matter: meaning or myth? Hum. Mol. Genet. 19, R162-R168. doi: 10.1093/hmg/ddq362.
-
(2010)
Hum. Mol. Genet
, vol.19
, pp. R162-R168
-
-
Ponting, C.P.1
Belgard, T.G.2
-
79
-
-
58849125280
-
HIV-1 Tat RNA silencing suppressor activity is conserved across kingdoms and counteracts translational repression of HIV-1
-
Qian, S., Zhong, X., Yu, L., Ding, B., de Haan, P., and Boris-Lawrie, K. (2009). HIV-1 Tat RNA silencing suppressor activity is conserved across kingdoms and counteracts translational repression of HIV-1. Proc. Natl. Acad. Sci. U.S.A. 106, 605-610. doi: 10.1073/pnas.0806822106.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 605-610
-
-
Qian, S.1
Zhong, X.2
Yu, L.3
Ding, B.4
de Haan, P.5
Boris-Lawrie, K.6
-
80
-
-
84888054227
-
HIV-1 evades innate immune recognition through specific cofactor recruitment
-
Rasaiyaah, J., Tan, C. P., Fletcher, A. J., Price, A. J., Blondeau, C., Hiiditch, L., et al. (2013). HIV-1 evades innate immune recognition through specific cofactor recruitment. Nature 503, 402-405. doi: 10.1038/nature12769.
-
(2013)
Nature
, vol.503
, pp. 402-405
-
-
Rasaiyaah, J.1
Tan, C.P.2
Fletcher, A.J.3
Price, A.J.4
Blondeau, C.5
Hiiditch, L.6
-
81
-
-
30044434769
-
Experimental validation of the regulate expression of large numbers if non-coding RNAs from the mouse genome
-
Ravasi, T., Suzuki, H., Pang, K. C., Katayama, S., Furuno, M., Okunishi, R., et al. (2006). Experimental validation of the regulate expression of large numbers if non-coding RNAs from the mouse genome. Genome Res. 16, 11-19. doi: 10.1101/gr.4200206.
-
(2006)
Genome Res
, vol.16
, pp. 11-19
-
-
Ravasi, T.1
Suzuki, H.2
Pang, K.C.3
Katayama, S.4
Furuno, M.5
Okunishi, R.6
-
82
-
-
84905440517
-
MicroRNAs differentially present in the plasma of HIV elite controllers reduce HIV infection in vitro
-
Reynoso, R., Laufer, N., Hackl, M., Skalicky, S., Monteforte, R., Turk, G., et al. (2014). MicroRNAs differentially present in the plasma of HIV elite controllers reduce HIV infection in vitro. Sci. Rep. 4:5915. doi: 10.1038/srep05915.
-
(2014)
Sci. Rep
, vol.4
, pp. 5915
-
-
Reynoso, R.1
Laufer, N.2
Hackl, M.3
Skalicky, S.4
Monteforte, R.5
Turk, G.6
-
83
-
-
0034641963
-
Defying death after DNA damage
-
Rich, T., Aleen, R. L., and Wyllie, A. H. (2000). Defying death after DNA damage. Nature 407, 777-783. doi: 10.1038/35037717.
-
(2000)
Nature
, vol.407
, pp. 777-783
-
-
Rich, T.1
Aleen, R.L.2
Wyllie, A.H.3
-
84
-
-
42449114966
-
Transcriptional control of human p53-related genes
-
Riley, T., Sontag, E., Chen, P., and Levine, A. (2008). Transcriptional control of human p53-related genes. Nat. Rev. Mol. Cell Biol. 9, 402-412. doi: 10.1038/nrm2395.
-
(2008)
Nat. Rev. Mol. Cell Biol
, vol.9
, pp. 402-412
-
-
Riley, T.1
Sontag, E.2
Chen, P.3
Levine, A.4
-
85
-
-
84902183146
-
An HIV-encoded antisense long noncoding RNA epigenetically regulates viral transcription
-
Saayman, S., Ackley, A., Turner, A. W., Famiglietti, M., Bosque, A., Clemson, M., et al. (2014). An HIV-encoded antisense long noncoding RNA epigenetically regulates viral transcription. Mol. Ther. 22, 1164-1175. doi: 10.1038/mt.2014.29.
-
(2014)
Mol. Ther
, vol.22
, pp. 1164-1175
-
-
Saayman, S.1
Ackley, A.2
Turner, A.W.3
Famiglietti, M.4
Bosque, A.5
Clemson, M.6
-
86
-
-
77749322701
-
Structural insights into RNA interference
-
Sashital, D. G., and Doudna, J. A. (2010). Structural insights into RNA interference. Curr. Opin. Struct. Biol. 20, 90-97. doi: 10.1016/j.sbi.2009.12.001.
-
(2010)
Curr. Opin. Struct. Biol
, vol.20
, pp. 90-97
-
-
Sashital, D.G.1
Doudna, J.A.2
-
87
-
-
80054684399
-
Long non-coding RNA modifies chromatin
-
Saxena, A., and Carninci, P. (2011). Long non-coding RNA modifies chromatin. Bioessays 33, 830-839. doi: 10.1002/bies.201100084.
-
(2011)
Bioessays
, vol.33
, pp. 830-839
-
-
Saxena, A.1
Carninci, P.2
-
88
-
-
79960104144
-
MicroRNAs in development and disease
-
Sayed, D., and Abdellatif, M. (2011). MicroRNAs in development and disease. Physiol. Rev. 91, 827-887. doi: 10.1152/physrev.00006.2010.
-
(2011)
Physiol. Rev
, vol.91
, pp. 827-887
-
-
Sayed, D.1
Abdellatif, M.2
-
89
-
-
84897997599
-
Role of miR-155 in the regulation of lymphocyte immune function and disease
-
Seddiki, N., Brezar, V., Ruffin, N., Lévy, Y., and Swaminathan, S. (2014). Role of miR-155 in the regulation of lymphocyte immune function and disease. Immunology 142, 32-38. doi: 10.1111/imm.12227.
-
(2014)
Immunology
, vol.142
, pp. 32-38
-
-
Seddiki, N.1
Brezar, V.2
Ruffin, N.3
Lévy, Y.4
Swaminathan, S.5
-
90
-
-
84868266765
-
Translation of Pur-a is targeted by cellular miRNAs to modulate the differentiation-dependent susceptibility of monocytes to HIV-1 infection
-
Shen, C. J., Jia, Y. H., Tian, R. R., Ding, M., Zhang, C., and Wang, J. H. (2012). Translation of Pur-a is targeted by cellular miRNAs to modulate the differentiation-dependent susceptibility of monocytes to HIV-1 infection. FASEB J. 26, 4755-4764. doi: 10.1096/fj.12-209023.
-
(2012)
FASEB J
, vol.26
, pp. 4755-4764
-
-
Shen, C.J.1
Jia, Y.H.2
Tian, R.R.3
Ding, M.4
Zhang, C.5
Wang, J.H.6
-
91
-
-
84856367312
-
Stabilization of hepatitis C virus RNA by an Ago2-miR-122 complex
-
Shimakami, T., Yamane, D., Jangra, R. K., Kempf, B. J., Spaniel, C., Barton, D. J., et al. (2012). Stabilization of hepatitis C virus RNA by an Ago2-miR-122 complex. Proc. Natl. Acad. Sci. U.S.A. 109, 941-946. doi: 10.1073/pnas.1112263109.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A
, vol.109
, pp. 941-946
-
-
Shimakami, T.1
Yamane, D.2
Jangra, R.K.3
Kempf, B.J.4
Spaniel, C.5
Barton, D.J.6
-
92
-
-
0037075032
-
The non-coding air RNA is required for silencing autosomal imprinted genes
-
Sleutels, F., Zwart, R., and Barlow, D. P. (2002). The non-coding air RNA is required for silencing autosomal imprinted genes. Nature 415, 810-813. doi: 10.1038/415810a.
-
(2002)
Nature
, vol.415
, pp. 810-813
-
-
Sleutels, F.1
Zwart, R.2
Barlow, D.P.3
-
93
-
-
70350738592
-
Human cellular restriction factors that target HIV-1 replication
-
Strebel, K., Luban, J., and Jeang, K. (2009). Human cellular restriction factors that target HIV-1 replication. BMC Med. 7:48. doi: 10.1186/1741-7015-7-48.
-
(2009)
BMC Med
, vol.7
, pp. 48
-
-
Strebel, K.1
Luban, J.2
Jeang, K.3
-
94
-
-
84863346515
-
Interplay between HIV-1 infection and host microRNAs
-
Sun, G., Li, H., Wu, X., Covarrubias, M., Scherer, L., Meinking, K., et al. (2012). Interplay between HIV-1 infection and host microRNAs. Nucleic Acids Res. 40, 2181-2196. doi: 10.1093/nar/gkr961.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 2181-2196
-
-
Sun, G.1
Li, H.2
Wu, X.3
Covarrubias, M.4
Scherer, L.5
Meinking, K.6
-
95
-
-
59249084325
-
miR-198 inhibits HIV-1 gene expression and replication in monocytes and its mechanism of action appears to involve repression of cyclin T1
-
Sung, T.-L., and Rice, A. P. (2009). miR-198 inhibits HIV-1 gene expression and replication in monocytes and its mechanism of action appears to involve repression of cyclin T1. PLoS Pathog. 5:e1000263. doi: 10.1371/journal.ppat.1000263.
-
(2009)
PLoS Pathog
, vol.5
-
-
Sung, T.-L.1
Rice, A.P.2
-
96
-
-
84894555049
-
MicroRNAs and HIV-1 infection: antiviral activities and beyond
-
Swaminathan, G., Navas-Martín, S., and Martín-García, J. (2014). MicroRNAs and HIV-1 infection: antiviral activities and beyond. J. Mol. Biol. 426, 1178-1197. doi: 10.1016/j.jmb.2013.12.017.
-
(2014)
J. Mol. Biol
, vol.426
, pp. 1178-1197
-
-
Swaminathan, G.1
Navas-Martín, S.2
Martín-García, J.3
-
97
-
-
84866923713
-
A role for microRNA-155 modulation in the anti-HIV-1 effects of Toll-like receptor 3 stimulation in macrophages
-
Swaminathan, G., Rossi, F., Sierra, L. J., Gupta, A., Navas-Martín, S., and Martín-García, J. (2012). A role for microRNA-155 modulation in the anti-HIV-1 effects of Toll-like receptor 3 stimulation in macrophages. PLoS Pathog. 8:e1002937. doi: 10.1371/journal.ppat.1002937.
-
(2012)
PLoS Pathog
, vol.8
-
-
Swaminathan, G.1
Rossi, F.2
Sierra, L.J.3
Gupta, A.4
Navas-Martín, S.5
Martín-García, J.6
-
98
-
-
84879312653
-
miRNAs and HIV: unforeseen determinants of host-pathogen interaction
-
Swaminathan, S., Murray, D. D., and Kelleher, A. D. (2013). miRNAs and HIV: unforeseen determinants of host-pathogen interaction. Immunol. Rev. 254, 265-280. doi: 10.1111/imr.12077.
-
(2013)
Immunol. Rev
, vol.254
, pp. 265-280
-
-
Swaminathan, S.1
Murray, D.D.2
Kelleher, A.D.3
-
99
-
-
34848893294
-
Apoptotic killing of HIV-1-infected macrophages is subverted by the viral envelope glycoprotein
-
Swingler, S., Mann, A. M., Zhou, J., Swingler, C., and Stevenson, M. (2013). Apoptotic killing of HIV-1-infected macrophages is subverted by the viral envelope glycoprotein. PLoS Pathogens 3:1281-1290. doi: 10.1371/journal.ppat.0030134.
-
(2013)
PLoS Pathogens
, vol.3
, pp. 1281-1290
-
-
Swingler, S.1
Mann, A.M.2
Zhou, J.3
Swingler, C.4
Stevenson, M.5
-
100
-
-
33947385291
-
Suppression of microRNA-silencing pathway by HIV-1 during virus replication
-
Triboulet, R., Mari, B., Lin, Y. L., Chable-Bessia, C., Bennasser, Y., Lebrigand, K., et al. (2007). Suppression of microRNA-silencing pathway by HIV-1 during virus replication. Science 315, 1579-1582. doi: 10.1126/science.1136319.
-
(2007)
Science
, vol.315
, pp. 1579-1582
-
-
Triboulet, R.1
Mari, B.2
Lin, Y.L.3
Chable-Bessia, C.4
Bennasser, Y.5
Lebrigand, K.6
-
101
-
-
77952905505
-
Most "dark matter" transcripts are associated with known genes
-
van Bakel, H., Nislow, C., Blencowe, B. J., and Hughes, T. R. (2010). Most "dark matter" transcripts are associated with known genes. PLoS Biol. 8:e1000371. doi: 10.1371/journal.pbio.1000371.
-
(2010)
PLoS Biol
, vol.8
-
-
van Bakel, H.1
Nislow, C.2
Blencowe, B.J.3
Hughes, T.R.4
-
102
-
-
84864464973
-
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways
-
Vlachos, I. S., Kostoulas, N., Vergoulis, T., Georgakilas, G., Reczko, M., Maragkakis, M., et al. (2012). DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. Nucleic Acids Res. 40, W498-504. doi: 10.1093/nar/gks494.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. W498-W504
-
-
Vlachos, I.S.1
Kostoulas, N.2
Vergoulis, T.3
Georgakilas, G.4
Reczko, M.5
Maragkakis, M.6
-
103
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
Wang, K. C., and Chang, H. Y. (2011). Molecular mechanisms of long noncoding RNAs. Mol. Cell 43, 904-914. doi: 10.1016/j.molcel.2011.08.018.
-
(2011)
Mol. Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
104
-
-
79953748673
-
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
-
Wang, K. C., Yang, Y. W., Liu, B., Sanyal, A., Corces-Zimmerman, R., Chen, Y., et al. (2011). A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature 472, 120-124. doi: 10.1038/nature09819.
-
(2011)
Nature
, vol.472
, pp. 120-124
-
-
Wang, K.C.1
Yang, Y.W.2
Liu, B.3
Sanyal, A.4
Corces-Zimmerman, R.5
Chen, Y.6
-
105
-
-
60249083292
-
Cellular microRNA expression correlates with susceptibility of monocytes/macrophages to HIV-1 infection
-
Wang, X., Ye, L., Hou, W., Zhou, Y., Wang, Y. J., Metzger, D. S., et al. (2009). Cellular microRNA expression correlates with susceptibility of monocytes/macrophages to HIV-1 infection. Blood 113, 671-674. doi: 10.1182/blood-2008-09-175000.
-
(2009)
Blood
, vol.113
, pp. 671-674
-
-
Wang, X.1
Ye, L.2
Hou, W.3
Zhou, Y.4
Wang, Y.J.5
Metzger, D.S.6
-
106
-
-
79957840356
-
Long noncoding RNAs and human disease
-
Wapinski, O., and Chang, H. Y. (2011). Long noncoding RNAs and human disease. Trends Cell Biol. 21, 354-361. doi: 10.1016/j.tcb.2011.04.001.
-
(2011)
Trends Cell Biol
, vol.21
, pp. 354-361
-
-
Wapinski, O.1
Chang, H.Y.2
-
107
-
-
68449092202
-
Architecture and secondary structure of an entire HIV-1 RNA genome
-
Watts, J. M., Dang, K. K., Gorelick, R. J., Leonard, C. W., Bess, J. W., Swanstrom, R., et al. (2009). Architecture and secondary structure of an entire HIV-1 RNA genome. Nature 460, 711-716. doi: 10.1038/nature08237.
-
(2009)
Nature
, vol.460
, pp. 711-716
-
-
Watts, J.M.1
Dang, K.K.2
Gorelick, R.J.3
Leonard, C.W.4
Bess, J.W.5
Swanstrom, R.6
-
108
-
-
13844320402
-
HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome
-
Westerhout, E. M., Ooms, M., Vink, M., Das, A. T., and Berkhout, B. (2005). HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome. Nucleic Acids Res. 33, 796-804. doi: 10.1093/nar/gki220.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 796-804
-
-
Westerhout, E.M.1
Ooms, M.2
Vink, M.3
Das, A.T.4
Berkhout, B.5
-
109
-
-
84880052796
-
In-depth analysis of the interaction of HIV-1 with cellular microRNA biogenesis and effector mechanisms
-
Whisnant, A. W., Bogerd, H. P., Flores, O., Ho, P., Powers, J. G., Sharova, N., et al. (2013). In-depth analysis of the interaction of HIV-1 with cellular microRNA biogenesis and effector mechanisms. MBio 4:e000193. doi: 10.1128/mBio.00193-13.
-
(2013)
MBio
, vol.4
-
-
Whisnant, A.W.1
Bogerd, H.P.2
Flores, O.3
Ho, P.4
Powers, J.G.5
Sharova, N.6
-
110
-
-
24644481406
-
A strategy for probing the function of noncoding RNAs finds a repressor of NFAT
-
Willingham, A. T., Orth, A. P., Batalov, S., Peters, E. C., Wen, B. G., Aza-Blanc, P., et al. (2005). A strategy for probing the function of noncoding RNAs finds a repressor of NFAT. Science 309, 1570-1573. doi: 10.1126/science.1115901.
-
(2005)
Science
, vol.309
, pp. 1570-1573
-
-
Willingham, A.T.1
Orth, A.P.2
Batalov, S.3
Peters, E.C.4
Wen, B.G.5
Aza-Blanc, P.6
-
111
-
-
67649671961
-
Long noncoding RNAs: functional surprises from the RNA world
-
Wilusz, J. E., Sunwoo, H., and Spector, D. L. (2009). Long noncoding RNAs: functional surprises from the RNA world. Genes Dev. 23, 1494-1504. doi: 10.1101/gad.1800909.
-
(2009)
Genes Dev
, vol.23
, pp. 1494-1504
-
-
Wilusz, J.E.1
Sunwoo, H.2
Spector, D.L.3
-
112
-
-
84855570512
-
Relationships of PBMC microRNA expression, plasma viral load, and CD4+ T-cell count in HIV-1-infected elite suppressors and viremic patients
-
Witwer, K. W., Watson, A. K., Blankson, J. N., and Clements, J. E. (2012). Relationships of PBMC microRNA expression, plasma viral load, and CD4+ T-cell count in HIV-1-infected elite suppressors and viremic patients. Retrovirology 9:5. doi: 10.1186/1742-4690-9-5.
-
(2012)
Retrovirology
, vol.9
, pp. 5
-
-
Witwer, K.W.1
Watson, A.K.2
Blankson, J.N.3
Clements, J.E.4
-
113
-
-
0242300620
-
Empirical analysis of transcriptional activity in the Arabidopsis genome
-
Yamada, K., Lim, J., Dale, J. M., Chen, H., Shinn, P., Palm, C. J., et al. (2003). Empirical analysis of transcriptional activity in the Arabidopsis genome. Science 302, 842-846. doi: 10.1126/science.1088305.
-
(2003)
Science
, vol.302
, pp. 842-846
-
-
Yamada, K.1
Lim, J.2
Dale, J.M.3
Chen, H.4
Shinn, P.5
Palm, C.J.6
-
114
-
-
30344465007
-
Changes in microRNA expression profiles in HIV-1-transfected human cells
-
Yeung, M. L., Bennasser, Y., Myers, T. G., Jiang, G., Benkirane, M., and Jeang, K.-T. T. (2005). Changes in microRNA expression profiles in HIV-1-transfected human cells. Retrovirology 2:81. doi: 10.1186/1742-4690-2-81.
-
(2005)
Retrovirology
, vol.2
, pp. 81
-
-
Yeung, M.L.1
Bennasser, Y.2
Myers, T.G.3
Jiang, G.4
Benkirane, M.5
Jeang, K.-T.T.6
-
115
-
-
84865379361
-
LincRNA-p21 suppresses target mRNA translation
-
Yoon, J., Abdelmohsen, K., Srikantan, S., Yang, X., Martindale, J. L., De, S., et al. (2012). LincRNA-p21 suppresses target mRNA translation. Mol. Cell 47, 1-8. doi: 10.1016/j.molcel.2012.06.027.
-
(2012)
Mol. Cell
, vol.47
, pp. 1-8
-
-
Yoon, J.1
Abdelmohsen, K.2
Srikantan, S.3
Yang, X.4
Martindale, J.L.5
De, S.6
-
116
-
-
84859172922
-
MiR-217 is involved in Tat-induced HIV-1 long terminal repeat (LTR) transactivation by down-regulation of SIRT1
-
Zhang, H. S., Wu, T. C., Sang, W. W., and Ruan, Z. (2012). MiR-217 is involved in Tat-induced HIV-1 long terminal repeat (LTR) transactivation by down-regulation of SIRT1. Biochim. Biophys. Acta 1823, 1017-1023. doi: 10.1016/j.bbamcr.2012.02.014.
-
(2012)
Biochim. Biophys. Acta
, vol.1823
, pp. 1017-1023
-
-
Zhang, H.S.1
Wu, T.C.2
Sang, W.W.3
Ruan, Z.4
-
117
-
-
70349184593
-
Resveratrol inhibited Tat-induced HIV-1 LTR transactivation via NAD+-dependent SIRT1 activity
-
Zhang, H. S., Zhou, Y., Wu, M. R., Zhou, H. S., and Xu, F. (2009). Resveratrol inhibited Tat-induced HIV-1 LTR transactivation via NAD+-dependent SIRT1 activity. Life Sci. 85, 484-489. doi: 10.1016/j.lfs.2009.07.014.
-
(2009)
Life Sci
, vol.85
, pp. 484-489
-
-
Zhang, H.S.1
Zhou, Y.2
Wu, M.R.3
Zhou, H.S.4
Xu, F.5
-
118
-
-
84874614275
-
NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression
-
Zhang, Q., Chen, C. Y., Yedavalli, V. S., and Jeang, K. T. (2013). NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression. MBio 4:e00596-e00612. doi: 10.1128/mBio.00596-12.
-
(2013)
MBio
, vol.4
-
-
Zhang, Q.1
Chen, C.Y.2
Yedavalli, V.S.3
Jeang, K.T.4
-
119
-
-
0034707047
-
The DNA damage response: putting checkpoints in perspective
-
Zhou, B. B., and Elledge, S. L. (2000). The DNA damage response: putting checkpoints in perspective. Nature 408, 433-439. doi: 10.1038/35044005.
-
(2000)
Nature
, vol.408
, pp. 433-439
-
-
Zhou, B.B.1
Elledge, S.L.2
|