-
1
-
-
0034507632
-
Transcription of eukaryotic protein-coding genes
-
Lee T.I., Young R.A. Transcription of eukaryotic protein-coding genes. Annu Rev Genet 2000, 34:77-137.
-
(2000)
Annu Rev Genet
, vol.34
, pp. 77-137
-
-
Lee, T.I.1
Young, R.A.2
-
2
-
-
0035839136
-
Translating the histone code
-
Jenuwein T. Translating the histone code. Science 2001, 293:1074-1080.
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
-
3
-
-
33847070442
-
The role of chromatin during transcription
-
Li B., Carey M., Workman J.L. The role of chromatin during transcription. Cell 2007, 128:707-719.
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
4
-
-
35848951163
-
Covalent modifications of histones during development and disease pathogenesis
-
Bhaumik S.R., Smith E., Shilatifard A. Covalent modifications of histones during development and disease pathogenesis. Nat Struct Mol Biol 2007, 14:1008-1016.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 1008-1016
-
-
Bhaumik, S.R.1
Smith, E.2
Shilatifard, A.3
-
5
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein B.E., Mikkelsen T.S., Xie X., Kamal M., Huebert D.J., Cuff J., Fry B., Meissner A., Wernig M., Plath K., et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 2006, 125:315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
-
6
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
Visel A., Blow M.J., Li Z., Zhang T., Akiyama J.A., Holt A., Plajzer-Frick I., Shoukry M., Wright C., Chen F., et al. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 2009, 457:854-858.
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
-
7
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman N.D., Stuart R.K., Hon G., Fu Y., Ching C.W., Hawkins R.D., Barrera L.O., Van Calcar S., Qu C., Ching K.A., et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 2007, 39:311-318.
-
(2007)
Nat Genet
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
-
8
-
-
77649140924
-
Methylation of H3K4 is required for inheritance of active transcriptional states
-
Muramoto T., Muller I., Thomas G., Melvin A., Chubb J.R. Methylation of H3K4 is required for inheritance of active transcriptional states. Curr Biol 2010, 20:397-406.
-
(2010)
Curr Biol
, vol.20
, pp. 397-406
-
-
Muramoto, T.1
Muller, I.2
Thomas, G.3
Melvin, A.4
Chubb, J.R.5
-
9
-
-
0242348752
-
Histone lysine methylation: a signature for chromatin function
-
Sims R.J., Nishioka K., Reinberg D. Histone lysine methylation: a signature for chromatin function. Trends Genet 2003, 19:629-639.
-
(2003)
Trends Genet
, vol.19
, pp. 629-639
-
-
Sims, R.J.1
Nishioka, K.2
Reinberg, D.3
-
10
-
-
33746849256
-
Regulation of MLL1 H3K4 methyltransferase activity by its core components
-
Dou Y., Milne T.A., Ruthenburg A.J., Lee S., Lee J.W., Verdine G.L., Allis C.D., Roeder R.G. Regulation of MLL1 H3K4 methyltransferase activity by its core components. Nat Struct Mol Biol 2006, 13:713-719.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 713-719
-
-
Dou, Y.1
Milne, T.A.2
Ruthenburg, A.J.3
Lee, S.4
Lee, J.W.5
Verdine, G.L.6
Allis, C.D.7
Roeder, R.G.8
-
11
-
-
0344837759
-
Structure of the catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase
-
Min J., Feng Q., Li Z., Zhang Y., Xu R.-M. Structure of the catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase. Cell 2003, 112:711-723.
-
(2003)
Cell
, vol.112
, pp. 711-723
-
-
Min, J.1
Feng, Q.2
Li, Z.3
Zhang, Y.4
Xu, R.-M.5
-
12
-
-
77954143236
-
Characterization of the DOT1L network: implications of diverse roles for DOT1L
-
Park G., Gong Z., Chen J., Kim J.-E. Characterization of the DOT1L network: implications of diverse roles for DOT1L. Protein J 2010, 29:213-223.
-
(2010)
Protein J
, vol.29
, pp. 213-223
-
-
Park, G.1
Gong, Z.2
Chen, J.3
Kim, J.-E.4
-
13
-
-
44649163849
-
Mechanisms involved in the regulation of histone lysine demethylases
-
Lan F., Nottke A.C., Shi Y. Mechanisms involved in the regulation of histone lysine demethylases. Curr Opin Cell Biol 2008, 20:316-325.
-
(2008)
Curr Opin Cell Biol
, vol.20
, pp. 316-325
-
-
Lan, F.1
Nottke, A.C.2
Shi, Y.3
-
14
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
Kapranov P., Cheng J., Dike S., Nix D.A., Duttagupta R., Willingham A.T., Stadler P.F., Hertel J., Hackermuller J., Hofacker I.L., et al. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 2007, 316:1484-1488.
-
(2007)
Science
, vol.316
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
Nix, D.A.4
Duttagupta, R.5
Willingham, A.T.6
Stadler, P.F.7
Hertel, J.8
Hackermuller, J.9
Hofacker, I.L.10
-
16
-
-
60149099385
-
Evolution and functions of long noncoding RNAs
-
Ponting C.P., Oliver P.L., Reik W. Evolution and functions of long noncoding RNAs. Cell 2009, 136:629-641.
-
(2009)
Cell
, vol.136
, pp. 629-641
-
-
Ponting, C.P.1
Oliver, P.L.2
Reik, W.3
-
17
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
Wang K.C., Chang H.Y. Molecular mechanisms of long noncoding RNAs. Mol Cell 2011, 43:904-914.
-
(2011)
Mol Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
18
-
-
78650240738
-
The X as model for RNA's niche in epigenomic regulation
-
Lee J.T. The X as model for RNA's niche in epigenomic regulation. Cold Spring Harb Perspect Biol 2010, 2:a003749.
-
(2010)
Cold Spring Harb Perspect Biol
, vol.2
-
-
Lee, J.T.1
-
19
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn J.L., Kertesz M., Wang J.K., Squazzo S.L., Xu X., Brugmann S.A., Goodnough L.H., Helms J.A., Farnham P.J., Segal E., et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007, 129:1311-1323.
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
Goodnough, L.H.7
Helms, J.A.8
Farnham, P.J.9
Segal, E.10
-
20
-
-
0037478652
-
Male-specific lethal complex of Drosophila targets activated regions of the X chromosome for chromatin remodeling
-
Sass G.L., Pannuti A., Lucchesi J.C. Male-specific lethal complex of Drosophila targets activated regions of the X chromosome for chromatin remodeling. Proc Natl Acad Sci USA 2003, 100:8287-8291.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 8287-8291
-
-
Sass, G.L.1
Pannuti, A.2
Lucchesi, J.C.3
-
21
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
Huarte M., Guttman M., Feldser D., Garber M., Koziol M.J., Kenzelmann-Broz D., Khalil A.M., Zuk O., Amit I., Rabani M., et al. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 2010, 142:409-419.
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
Garber, M.4
Koziol, M.J.5
Kenzelmann-Broz, D.6
Khalil, A.M.7
Zuk, O.8
Amit, I.9
Rabani, M.10
-
22
-
-
79952259260
-
X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila
-
Larschan E., Bishop E.P., Kharchenko P.V., Core L.J., Lis J.T., Park P.J., Kuroda M.I. X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila. Nature 2011, 471:115-118.
-
(2011)
Nature
, vol.471
, pp. 115-118
-
-
Larschan, E.1
Bishop, E.P.2
Kharchenko, P.V.3
Core, L.J.4
Lis, J.T.5
Park, P.J.6
Kuroda, M.I.7
-
23
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core L.J., Waterfall J.J., Lis J.T. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 2008, 322:1845-1848.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
24
-
-
79959198166
-
Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
-
Wang D., Garcia-Bassets I., Benner C., Li W., Su X., Zhou Y., Qiu J., Liu W., Kaikkonen M.U., Ohgi K.A., et al. Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA. Nature 2011, 10.1038/nature10006.
-
(2011)
Nature
-
-
Wang, D.1
Garcia-Bassets, I.2
Benner, C.3
Li, W.4
Su, X.5
Zhou, Y.6
Qiu, J.7
Liu, W.8
Kaikkonen, M.U.9
Ohgi, K.A.10
-
25
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias A., Bajpai R., Swigut T., Brugmann S.A., Flynn R.A., Wysocka J. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 2011, 470:279-283.
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
26
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton M.P., Cheng A.W., Welstead G.G., Kooistra T., Carey B.W., Steine E.J., Hanna J., Lodato M.A., Frampton G.M., Sharp P.A., et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc Natl Acad Sci USA 2010, 107:21931-21936.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
27
-
-
0030606239
-
The transcriptional coactivators p300 and CBP are histone acetyltransferases
-
Ogryzko V., Schiltz R., Russanova V., Howard B. The transcriptional coactivators p300 and CBP are histone acetyltransferases. Cell 1996, 87:953-959.
-
(1996)
Cell
, vol.87
, pp. 953-959
-
-
Ogryzko, V.1
Schiltz, R.2
Russanova, V.3
Howard, B.4
-
28
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
Kagey M.H., Newman J.J., Bilodeau S., Zhan Y., Orlando D.A., van Berkum N.L., Ebmeier C.C., Goossens J., Rahl P.B., Levine S.S., et al. Mediator and cohesin connect gene expression and chromatin architecture. Nature 2010, 467:430-435.
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
Newman, J.J.2
Bilodeau, S.3
Zhan, Y.4
Orlando, D.A.5
van Berkum, N.L.6
Ebmeier, C.C.7
Goossens, J.8
Rahl, P.B.9
Levine, S.S.10
-
29
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim T.-K., Hemberg M., Gray J.M., Costa A.M., Bear D.M., Wu J., Harmin D.A., Laptewicz M., Barbara-Haley K., Kuersten S., et al. Widespread transcription at neuronal activity-regulated enhancers. Nature 2010, 465:182-187.
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.-K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
Bear, D.M.5
Wu, J.6
Harmin, D.A.7
Laptewicz, M.8
Barbara-Haley, K.9
Kuersten, S.10
-
30
-
-
79959756263
-
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
-
This study identifies a class of lncRNAs that are located in the promoters of cell-cycle genes and regulated by important cellular response pathways. Additionally, a novel lncRNA was identified that is responsive to DNA damage and which interacts with the transcription factor NF-YA.
-
Hung T., Wang Y., Lin M.F., Koegel A.K., Kotake Y., Grant G.D., Horlings H.M., Shah N., Umbricht C., Wang P., et al. Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nat Genet 2011, This study identifies a class of lncRNAs that are located in the promoters of cell-cycle genes and regulated by important cellular response pathways. Additionally, a novel lncRNA was identified that is responsive to DNA damage and which interacts with the transcription factor NF-YA. 10.1038/ng.848.
-
(2011)
Nat Genet
-
-
Hung, T.1
Wang, Y.2
Lin, M.F.3
Koegel, A.K.4
Kotake, Y.5
Grant, G.D.6
Horlings, H.M.7
Shah, N.8
Umbricht, C.9
Wang, P.10
-
31
-
-
57849140661
-
Divergent transcription from active promoters
-
Seila A.C., Calabrese J.M., Levine S.S., Yeo G.W., Rahl P.B., Flynn R.A., Young R.A., Sharp P.A. Divergent transcription from active promoters. Science 2008, 322:1849-1851.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
Flynn, R.A.6
Young, R.A.7
Sharp, P.A.8
-
32
-
-
60549114880
-
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
-
Neil H., Malabat C., d'Aubenton-Carafa Y., Xu Z., Steinmetz L.M., Jacquier A. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 2009, 457:1038-1042.
-
(2009)
Nature
, vol.457
, pp. 1038-1042
-
-
Neil, H.1
Malabat, C.2
d'Aubenton-Carafa, Y.3
Xu, Z.4
Steinmetz, L.M.5
Jacquier, A.6
-
33
-
-
60549108380
-
Bidirectional promoters generate pervasive transcription in yeast
-
Xu Z., Wei W., Gagneur J., Perocchi F., Clauder-Münster S., Camblong J., Guffanti E., Stutz F., Huber W., Steinmetz L.M. Bidirectional promoters generate pervasive transcription in yeast. Nature 2009, 457:1033-1037.
-
(2009)
Nature
, vol.457
, pp. 1033-1037
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
Perocchi, F.4
Clauder-Münster, S.5
Camblong, J.6
Guffanti, E.7
Stutz, F.8
Huber, W.9
Steinmetz, L.M.10
-
34
-
-
78751659330
-
Nascent transcript sequencing visualizes transcription at nucleotide resolution
-
Churchman L.S., Weissman J.S. Nascent transcript sequencing visualizes transcription at nucleotide resolution. Nature 2011, 469:368-373.
-
(2011)
Nature
, vol.469
, pp. 368-373
-
-
Churchman, L.S.1
Weissman, J.S.2
-
35
-
-
69249215400
-
Divergent transcription: a new feature of active promoters
-
Seila A.C., Core L.J., Lis J.T., Sharp P.A. Divergent transcription: a new feature of active promoters. Cell Cycle 2009, 8:2557-2564.
-
(2009)
Cell Cycle
, vol.8
, pp. 2557-2564
-
-
Seila, A.C.1
Core, L.J.2
Lis, J.T.3
Sharp, P.A.4
-
36
-
-
77951920690
-
C-Myc regulates transcriptional pause release
-
Rahl P.B., Lin C.Y., Seila A.C., Flynn R.A., Mccuine S., Burge C.B., Sharp P.A., Young R.A. c-Myc regulates transcriptional pause release. Cell 2010, 141:432-445.
-
(2010)
Cell
, vol.141
, pp. 432-445
-
-
Rahl, P.B.1
Lin, C.Y.2
Seila, A.C.3
Flynn, R.A.4
Mccuine, S.5
Burge, C.B.6
Sharp, P.A.7
Young, R.A.8
-
37
-
-
79960569959
-
Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome
-
Flynn R.A., Almada A.E., Zamudio J.R., Sharp P.A. Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome. Proc Natl Acad Sci USA 2011, 108:10460-10465.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 10460-10465
-
-
Flynn, R.A.1
Almada, A.E.2
Zamudio, J.R.3
Sharp, P.A.4
-
38
-
-
36048951040
-
Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae
-
Camblong J., Iglesias N., Fickentscher C., Dieppois G., Stutz F. Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae. Cell 2007, 131:706-717.
-
(2007)
Cell
, vol.131
, pp. 706-717
-
-
Camblong, J.1
Iglesias, N.2
Fickentscher, C.3
Dieppois, G.4
Stutz, F.5
-
39
-
-
67649666831
-
Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae
-
Camblong J., Beyrouthy N., Guffanti E., Schlaepfer G., Steinmetz L.M., Stutz F. Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae. Genes Dev 2009, 23:1534-1545.
-
(2009)
Genes Dev
, vol.23
, pp. 1534-1545
-
-
Camblong, J.1
Beyrouthy, N.2
Guffanti, E.3
Schlaepfer, G.4
Steinmetz, L.M.5
Stutz, F.6
-
40
-
-
40349116304
-
A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae
-
Berretta J., Pinskaya M., Morillon A. A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae. Genes Dev 2008, 22:615-626.
-
(2008)
Genes Dev
, vol.22
, pp. 615-626
-
-
Berretta, J.1
Pinskaya, M.2
Morillon, A.3
-
41
-
-
79960065233
-
XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast
-
van Dijk E.L., Chen C.L., d'Aubenton-Carafa Y., Gourvennec S., Kwapisz M., Roche V., Bertrand C., Silvain M., Legoix-Né P., Loeillet S., et al. XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast. Nature 2011, 10.1038/nature10118.
-
(2011)
Nature
-
-
van Dijk, E.L.1
Chen, C.L.2
d'Aubenton-Carafa, Y.3
Gourvennec, S.4
Kwapisz, M.5
Roche, V.6
Bertrand, C.7
Silvain, M.8
Legoix-Né, P.9
Loeillet, S.10
-
42
-
-
77957243921
-
Long noncoding RNAs with enhancer-like function in human cells
-
Ørom U.A., Derrien T., Beringer M., Gumireddy K., Gardini A., Bussotti G., Lai F., Zytnicki M., Notredame C., Huang Q., et al. Long noncoding RNAs with enhancer-like function in human cells. Cell 2010, 143:46-58.
-
(2010)
Cell
, vol.143
, pp. 46-58
-
-
Ørom, U.A.1
Derrien, T.2
Beringer, M.3
Gumireddy, K.4
Gardini, A.5
Bussotti, G.6
Lai, F.7
Zytnicki, M.8
Notredame, C.9
Huang, Q.10
-
43
-
-
79953748673
-
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
-
Wang K.C., Yang Y.W., Liu B., Sanyal A., Corces-Zimmerman R., Chen Y., Lajoie B.R., Protacio A., Flynn R.A., Gupta R.A., et al. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature 2011, 472:120-124.
-
(2011)
Nature
, vol.472
, pp. 120-124
-
-
Wang, K.C.1
Yang, Y.W.2
Liu, B.3
Sanyal, A.4
Corces-Zimmerman, R.5
Chen, Y.6
Lajoie, B.R.7
Protacio, A.8
Flynn, R.A.9
Gupta, R.A.10
-
44
-
-
80052972698
-
The noncoding RNA mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin
-
Bertani S., Sauer S., Bolotin E., Sauer F. The noncoding RNA mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin. Mol Cell 2011, 43:1040-1046.
-
(2011)
Mol Cell
, vol.43
, pp. 1040-1046
-
-
Bertani, S.1
Sauer, S.2
Bolotin, E.3
Sauer, F.4
-
45
-
-
77956639427
-
Wilms tumor chromatin profiles highlight stem cell properties and a renal developmental network
-
Aiden A.P., Rivera M.N., Rheinbay E., Ku M., Coffman E.J., Truong T.T., Vargas S.O., Lander E.S., Haber D.A., Bernstein B.E. Wilms tumor chromatin profiles highlight stem cell properties and a renal developmental network. Stem Cell 2010, 6:591-602.
-
(2010)
Stem Cell
, vol.6
, pp. 591-602
-
-
Aiden, A.P.1
Rivera, M.N.2
Rheinbay, E.3
Ku, M.4
Coffman, E.J.5
Truong, T.T.6
Vargas, S.O.7
Lander, E.S.8
Haber, D.A.9
Bernstein, B.E.10
-
46
-
-
79961027510
-
Crystal structure of the N-terminal region of human Ash2L shows a winged-helix motif involved in DNA binding
-
Chen Y., Wan B., Wang K.C., Cao F., Yang Y., Protacio A., Dou Y., Chang H.Y., Lei M. Crystal structure of the N-terminal region of human Ash2L shows a winged-helix motif involved in DNA binding. EMBO Rep 2011, 12:797-803.
-
(2011)
EMBO Rep
, vol.12
, pp. 797-803
-
-
Chen, Y.1
Wan, B.2
Wang, K.C.3
Cao, F.4
Yang, Y.5
Protacio, A.6
Dou, Y.7
Chang, H.Y.8
Lei, M.9
-
47
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M., Amit I., Garber M., French C., Lin M.F., Feldser D., Huarte M., Zuk O., Carey B.W., Cassady J.P., et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009, 458:223-227.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
-
48
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili M.N., Trapnell C., Goff L., Koziol M., Tazon-Vega B., Regev A., Rinn J.L. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 2011, 10.1101/gad.17446611.
-
(2011)
Genes Dev
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
Koziol, M.4
Tazon-Vega, B.5
Regev, A.6
Rinn, J.L.7
-
49
-
-
80052869283
-
LincRNAs act in the circuitry controlling pluripotency and differentiation
-
Guttman M., Donaghey J., Carey B.W., Garber M., Grenier J.K., Munson G., Young G., Lucas A.B., Ach R., Bruhn L., et al. lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 2011, 10.1038/nature10398.
-
(2011)
Nature
-
-
Guttman, M.1
Donaghey, J.2
Carey, B.W.3
Garber, M.4
Grenier, J.K.5
Munson, G.6
Young, G.7
Lucas, A.B.8
Ach, R.9
Bruhn, L.10
-
50
-
-
80054756754
-
Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions
-
Chu C., Qu K., Zhong F., Artandi S.E., Chang H.Y. Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Mol Cell 2011, 10.1016/j.molcel.2011.08.027.
-
(2011)
Mol Cell
-
-
Chu, C.1
Qu, K.2
Zhong, F.3
Artandi, S.E.4
Chang, H.Y.5
-
51
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
The FANTOM Consortium
-
The FANTOM Consortium The transcriptional landscape of the mammalian genome. Science 2005, 309:1559-1563.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
-
52
-
-
20444368036
-
Cryptic Pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
-
Wyers F., Rougemaille M., Badis G., Rousselle J.-C., Dufour M.-E., Boulay J., Régnault B., Devaux F., Namane A., Séraphin B. Cryptic Pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase. Cell 2005, 121:725-737.
-
(2005)
Cell
, vol.121
, pp. 725-737
-
-
Wyers, F.1
Rougemaille, M.2
Badis, G.3
Rousselle, J.-C.4
Dufour, M.-E.5
Boulay, J.6
Régnault, B.7
Devaux, F.8
Namane, A.9
Séraphin, B.10
-
53
-
-
33748435751
-
Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the Nrd1-Nab3 pathway in genome surveillance
-
Thiebaut M., Kisseleva-Romanova E., Rougemaille M., Boulay J., Libri D. Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the Nrd1-Nab3 pathway in genome surveillance. Mol Cell 2006, 23:853-864.
-
(2006)
Mol Cell
, vol.23
, pp. 853-864
-
-
Thiebaut, M.1
Kisseleva-Romanova, E.2
Rougemaille, M.3
Boulay, J.4
Libri, D.5
-
54
-
-
33748424364
-
Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3
-
Arigo J.T., Eyler D.E., Carroll K.L., Corden J.L. Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3. Mol Cell 2006, 23:841-851.
-
(2006)
Mol Cell
, vol.23
, pp. 841-851
-
-
Arigo, J.T.1
Eyler, D.E.2
Carroll, K.L.3
Corden, J.L.4
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