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Volumn 22, Issue 2, 2012, Pages 172-178

Active chromatin and noncoding RNAs: An intimate relationship

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; HISTONE H3; HISTONE H3 LYSINE 4; MESSENGER RNA; UNCLASSIFIED DRUG; UNTRANSLATED RNA;

EID: 84860362829     PISSN: 0959437X     EISSN: 18790380     Source Type: Journal    
DOI: 10.1016/j.gde.2011.11.002     Document Type: Review
Times cited : (45)

References (54)
  • 1
    • 0034507632 scopus 로고    scopus 로고
    • Transcription of eukaryotic protein-coding genes
    • Lee T.I., Young R.A. Transcription of eukaryotic protein-coding genes. Annu Rev Genet 2000, 34:77-137.
    • (2000) Annu Rev Genet , vol.34 , pp. 77-137
    • Lee, T.I.1    Young, R.A.2
  • 2
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • Jenuwein T. Translating the histone code. Science 2001, 293:1074-1080.
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1
  • 3
    • 33847070442 scopus 로고    scopus 로고
    • The role of chromatin during transcription
    • Li B., Carey M., Workman J.L. The role of chromatin during transcription. Cell 2007, 128:707-719.
    • (2007) Cell , vol.128 , pp. 707-719
    • Li, B.1    Carey, M.2    Workman, J.L.3
  • 4
    • 35848951163 scopus 로고    scopus 로고
    • Covalent modifications of histones during development and disease pathogenesis
    • Bhaumik S.R., Smith E., Shilatifard A. Covalent modifications of histones during development and disease pathogenesis. Nat Struct Mol Biol 2007, 14:1008-1016.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 1008-1016
    • Bhaumik, S.R.1    Smith, E.2    Shilatifard, A.3
  • 8
    • 77649140924 scopus 로고    scopus 로고
    • Methylation of H3K4 is required for inheritance of active transcriptional states
    • Muramoto T., Muller I., Thomas G., Melvin A., Chubb J.R. Methylation of H3K4 is required for inheritance of active transcriptional states. Curr Biol 2010, 20:397-406.
    • (2010) Curr Biol , vol.20 , pp. 397-406
    • Muramoto, T.1    Muller, I.2    Thomas, G.3    Melvin, A.4    Chubb, J.R.5
  • 9
    • 0242348752 scopus 로고    scopus 로고
    • Histone lysine methylation: a signature for chromatin function
    • Sims R.J., Nishioka K., Reinberg D. Histone lysine methylation: a signature for chromatin function. Trends Genet 2003, 19:629-639.
    • (2003) Trends Genet , vol.19 , pp. 629-639
    • Sims, R.J.1    Nishioka, K.2    Reinberg, D.3
  • 11
    • 0344837759 scopus 로고    scopus 로고
    • Structure of the catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase
    • Min J., Feng Q., Li Z., Zhang Y., Xu R.-M. Structure of the catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase. Cell 2003, 112:711-723.
    • (2003) Cell , vol.112 , pp. 711-723
    • Min, J.1    Feng, Q.2    Li, Z.3    Zhang, Y.4    Xu, R.-M.5
  • 12
    • 77954143236 scopus 로고    scopus 로고
    • Characterization of the DOT1L network: implications of diverse roles for DOT1L
    • Park G., Gong Z., Chen J., Kim J.-E. Characterization of the DOT1L network: implications of diverse roles for DOT1L. Protein J 2010, 29:213-223.
    • (2010) Protein J , vol.29 , pp. 213-223
    • Park, G.1    Gong, Z.2    Chen, J.3    Kim, J.-E.4
  • 13
    • 44649163849 scopus 로고    scopus 로고
    • Mechanisms involved in the regulation of histone lysine demethylases
    • Lan F., Nottke A.C., Shi Y. Mechanisms involved in the regulation of histone lysine demethylases. Curr Opin Cell Biol 2008, 20:316-325.
    • (2008) Curr Opin Cell Biol , vol.20 , pp. 316-325
    • Lan, F.1    Nottke, A.C.2    Shi, Y.3
  • 15
    • 60349120914 scopus 로고    scopus 로고
    • Long non-coding RNAs: insights into functions
    • Mercer T.R., Dinger M.E., Mattick J.S. Long non-coding RNAs: insights into functions. Nat Rev Genet 2009, 10:155-159.
    • (2009) Nat Rev Genet , vol.10 , pp. 155-159
    • Mercer, T.R.1    Dinger, M.E.2    Mattick, J.S.3
  • 16
    • 60149099385 scopus 로고    scopus 로고
    • Evolution and functions of long noncoding RNAs
    • Ponting C.P., Oliver P.L., Reik W. Evolution and functions of long noncoding RNAs. Cell 2009, 136:629-641.
    • (2009) Cell , vol.136 , pp. 629-641
    • Ponting, C.P.1    Oliver, P.L.2    Reik, W.3
  • 17
    • 80053045739 scopus 로고    scopus 로고
    • Molecular mechanisms of long noncoding RNAs
    • Wang K.C., Chang H.Y. Molecular mechanisms of long noncoding RNAs. Mol Cell 2011, 43:904-914.
    • (2011) Mol Cell , vol.43 , pp. 904-914
    • Wang, K.C.1    Chang, H.Y.2
  • 18
    • 78650240738 scopus 로고    scopus 로고
    • The X as model for RNA's niche in epigenomic regulation
    • Lee J.T. The X as model for RNA's niche in epigenomic regulation. Cold Spring Harb Perspect Biol 2010, 2:a003749.
    • (2010) Cold Spring Harb Perspect Biol , vol.2
    • Lee, J.T.1
  • 20
    • 0037478652 scopus 로고    scopus 로고
    • Male-specific lethal complex of Drosophila targets activated regions of the X chromosome for chromatin remodeling
    • Sass G.L., Pannuti A., Lucchesi J.C. Male-specific lethal complex of Drosophila targets activated regions of the X chromosome for chromatin remodeling. Proc Natl Acad Sci USA 2003, 100:8287-8291.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 8287-8291
    • Sass, G.L.1    Pannuti, A.2    Lucchesi, J.C.3
  • 23
    • 57849109058 scopus 로고    scopus 로고
    • Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
    • Core L.J., Waterfall J.J., Lis J.T. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 2008, 322:1845-1848.
    • (2008) Science , vol.322 , pp. 1845-1848
    • Core, L.J.1    Waterfall, J.J.2    Lis, J.T.3
  • 27
    • 0030606239 scopus 로고    scopus 로고
    • The transcriptional coactivators p300 and CBP are histone acetyltransferases
    • Ogryzko V., Schiltz R., Russanova V., Howard B. The transcriptional coactivators p300 and CBP are histone acetyltransferases. Cell 1996, 87:953-959.
    • (1996) Cell , vol.87 , pp. 953-959
    • Ogryzko, V.1    Schiltz, R.2    Russanova, V.3    Howard, B.4
  • 30
    • 79959756263 scopus 로고    scopus 로고
    • Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
    • This study identifies a class of lncRNAs that are located in the promoters of cell-cycle genes and regulated by important cellular response pathways. Additionally, a novel lncRNA was identified that is responsive to DNA damage and which interacts with the transcription factor NF-YA.
    • Hung T., Wang Y., Lin M.F., Koegel A.K., Kotake Y., Grant G.D., Horlings H.M., Shah N., Umbricht C., Wang P., et al. Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nat Genet 2011, This study identifies a class of lncRNAs that are located in the promoters of cell-cycle genes and regulated by important cellular response pathways. Additionally, a novel lncRNA was identified that is responsive to DNA damage and which interacts with the transcription factor NF-YA. 10.1038/ng.848.
    • (2011) Nat Genet
    • Hung, T.1    Wang, Y.2    Lin, M.F.3    Koegel, A.K.4    Kotake, Y.5    Grant, G.D.6    Horlings, H.M.7    Shah, N.8    Umbricht, C.9    Wang, P.10
  • 32
    • 60549114880 scopus 로고    scopus 로고
    • Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
    • Neil H., Malabat C., d'Aubenton-Carafa Y., Xu Z., Steinmetz L.M., Jacquier A. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 2009, 457:1038-1042.
    • (2009) Nature , vol.457 , pp. 1038-1042
    • Neil, H.1    Malabat, C.2    d'Aubenton-Carafa, Y.3    Xu, Z.4    Steinmetz, L.M.5    Jacquier, A.6
  • 34
    • 78751659330 scopus 로고    scopus 로고
    • Nascent transcript sequencing visualizes transcription at nucleotide resolution
    • Churchman L.S., Weissman J.S. Nascent transcript sequencing visualizes transcription at nucleotide resolution. Nature 2011, 469:368-373.
    • (2011) Nature , vol.469 , pp. 368-373
    • Churchman, L.S.1    Weissman, J.S.2
  • 35
    • 69249215400 scopus 로고    scopus 로고
    • Divergent transcription: a new feature of active promoters
    • Seila A.C., Core L.J., Lis J.T., Sharp P.A. Divergent transcription: a new feature of active promoters. Cell Cycle 2009, 8:2557-2564.
    • (2009) Cell Cycle , vol.8 , pp. 2557-2564
    • Seila, A.C.1    Core, L.J.2    Lis, J.T.3    Sharp, P.A.4
  • 37
    • 79960569959 scopus 로고    scopus 로고
    • Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome
    • Flynn R.A., Almada A.E., Zamudio J.R., Sharp P.A. Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome. Proc Natl Acad Sci USA 2011, 108:10460-10465.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 10460-10465
    • Flynn, R.A.1    Almada, A.E.2    Zamudio, J.R.3    Sharp, P.A.4
  • 38
    • 36048951040 scopus 로고    scopus 로고
    • Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae
    • Camblong J., Iglesias N., Fickentscher C., Dieppois G., Stutz F. Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae. Cell 2007, 131:706-717.
    • (2007) Cell , vol.131 , pp. 706-717
    • Camblong, J.1    Iglesias, N.2    Fickentscher, C.3    Dieppois, G.4    Stutz, F.5
  • 39
    • 67649666831 scopus 로고    scopus 로고
    • Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae
    • Camblong J., Beyrouthy N., Guffanti E., Schlaepfer G., Steinmetz L.M., Stutz F. Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae. Genes Dev 2009, 23:1534-1545.
    • (2009) Genes Dev , vol.23 , pp. 1534-1545
    • Camblong, J.1    Beyrouthy, N.2    Guffanti, E.3    Schlaepfer, G.4    Steinmetz, L.M.5    Stutz, F.6
  • 40
    • 40349116304 scopus 로고    scopus 로고
    • A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae
    • Berretta J., Pinskaya M., Morillon A. A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae. Genes Dev 2008, 22:615-626.
    • (2008) Genes Dev , vol.22 , pp. 615-626
    • Berretta, J.1    Pinskaya, M.2    Morillon, A.3
  • 44
    • 80052972698 scopus 로고    scopus 로고
    • The noncoding RNA mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin
    • Bertani S., Sauer S., Bolotin E., Sauer F. The noncoding RNA mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin. Mol Cell 2011, 43:1040-1046.
    • (2011) Mol Cell , vol.43 , pp. 1040-1046
    • Bertani, S.1    Sauer, S.2    Bolotin, E.3    Sauer, F.4
  • 46
    • 79961027510 scopus 로고    scopus 로고
    • Crystal structure of the N-terminal region of human Ash2L shows a winged-helix motif involved in DNA binding
    • Chen Y., Wan B., Wang K.C., Cao F., Yang Y., Protacio A., Dou Y., Chang H.Y., Lei M. Crystal structure of the N-terminal region of human Ash2L shows a winged-helix motif involved in DNA binding. EMBO Rep 2011, 12:797-803.
    • (2011) EMBO Rep , vol.12 , pp. 797-803
    • Chen, Y.1    Wan, B.2    Wang, K.C.3    Cao, F.4    Yang, Y.5    Protacio, A.6    Dou, Y.7    Chang, H.Y.8    Lei, M.9
  • 48
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili M.N., Trapnell C., Goff L., Koziol M., Tazon-Vega B., Regev A., Rinn J.L. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 2011, 10.1101/gad.17446611.
    • (2011) Genes Dev
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 50
    • 80054756754 scopus 로고    scopus 로고
    • Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions
    • Chu C., Qu K., Zhong F., Artandi S.E., Chang H.Y. Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Mol Cell 2011, 10.1016/j.molcel.2011.08.027.
    • (2011) Mol Cell
    • Chu, C.1    Qu, K.2    Zhong, F.3    Artandi, S.E.4    Chang, H.Y.5
  • 51
    • 24644519490 scopus 로고    scopus 로고
    • The transcriptional landscape of the mammalian genome
    • The FANTOM Consortium
    • The FANTOM Consortium The transcriptional landscape of the mammalian genome. Science 2005, 309:1559-1563.
    • (2005) Science , vol.309 , pp. 1559-1563
  • 53
    • 33748435751 scopus 로고    scopus 로고
    • Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the Nrd1-Nab3 pathway in genome surveillance
    • Thiebaut M., Kisseleva-Romanova E., Rougemaille M., Boulay J., Libri D. Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the Nrd1-Nab3 pathway in genome surveillance. Mol Cell 2006, 23:853-864.
    • (2006) Mol Cell , vol.23 , pp. 853-864
    • Thiebaut, M.1    Kisseleva-Romanova, E.2    Rougemaille, M.3    Boulay, J.4    Libri, D.5
  • 54
    • 33748424364 scopus 로고    scopus 로고
    • Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3
    • Arigo J.T., Eyler D.E., Carroll K.L., Corden J.L. Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3. Mol Cell 2006, 23:841-851.
    • (2006) Mol Cell , vol.23 , pp. 841-851
    • Arigo, J.T.1    Eyler, D.E.2    Carroll, K.L.3    Corden, J.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.