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Volumn 5, Issue , 2015, Pages

A rapid and reliable strategy for chromosomal integration of gene(s) with multiple copies

Author keywords

[No Author keywords available]

Indexed keywords

DNA POLYMERASE; RECOMBINASE;

EID: 84926665601     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep09684     Document Type: Article
Times cited : (60)

References (49)
  • 1
    • 84855694523 scopus 로고    scopus 로고
    • Modular engineering of L-tyrosine production in Escherichia coli
    • Juminaga, D. et al. Modular engineering of L-tyrosine production in Escherichia coli. Appl Environ Microbiol 78, 89-98 (2012).
    • (2012) Appl Environ Microbiol , vol.78 , pp. 89-98
    • Juminaga, D.1
  • 2
    • 84879825498 scopus 로고    scopus 로고
    • Metabolic and pathway engineering to influence native and altered erythromycin production through E. Coli
    • Jiang, M. & Pfeifer, B. A. Metabolic and pathway engineering to influence native and altered erythromycin production through E. coli. Metab Eng 19, 42-49 (2013).
    • (2013) Metab Eng , vol.19 , pp. 42-49
    • Jiang, M.1    Pfeifer, B.A.2
  • 4
    • 2342653439 scopus 로고    scopus 로고
    • Plasmid copy number and plasmid stability
    • Friehs, K. Plasmid copy number and plasmid stability. Adv Biochem Eng Biotechnol 86, 47-82 (2004).
    • (2004) Adv Biochem Eng Biotechnol , vol.86 , pp. 47-82
    • Friehs, K.1
  • 5
    • 2942511439 scopus 로고    scopus 로고
    • A host/plasmid system that is not dependent on antibiotics and antibiotic resistance genes for stable plasmid maintenance in Escherichia coli
    • Hägg, P., De Pohl, J. W., Abdulkarim, F. & Isaksson, L. A. A host/plasmid system that is not dependent on antibiotics and antibiotic resistance genes for stable plasmid maintenance in Escherichia coli. J Biotechnol 111, 17-30 (2004).
    • (2004) J Biotechnol , vol.111 , pp. 17-30
    • Hägg, P.1    De Pohl, J.W.2    Abdulkarim, F.3    Isaksson, L.A.4
  • 6
    • 0036953835 scopus 로고    scopus 로고
    • Genetic engineering using homologous recombination
    • Court, D. L., Sawitzke, J. A. & Thomason, L. C. Genetic engineering using homologous recombination. Annu Rev Genet 36, 361-388 (2002).
    • (2002) Annu Rev Genet , vol.36 , pp. 361-388
    • Court, D.L.1    Sawitzke, J.A.2    Thomason, L.C.3
  • 7
    • 0030860064 scopus 로고    scopus 로고
    • Versatile insertion plasmids for targeted genome manipulations in bacteria: Isolation, deletion, and rescue of the pathogenicity island LEE of the Escherichia coli O157:H7 genome
    • Posfai, G., Koob, M. D., Kirkpatrick, H. A. & Blattner, F. R. Versatile insertion plasmids for targeted genome manipulations in bacteria: isolation, deletion, and rescue of the pathogenicity island LEE of the Escherichia coli O157:H7 genome. J Bacteriol 179, 4426-4428 (1997).
    • (1997) J Bacteriol , vol.179 , pp. 4426-4428
    • Posfai, G.1    Koob, M.D.2    Kirkpatrick, H.A.3    Blattner, F.R.4
  • 8
    • 0032699238 scopus 로고    scopus 로고
    • Chromosomal integration of heterologous DNA in Escherichia coli with precise removal of markers and replicons used during construction
    • Martinez-Morales, F., Borges, A. C., Martinez, A., Shanmugam, K. T. & Ingram, L. O. Chromosomal integration of heterologous DNA in Escherichia coli with precise removal of markers and replicons used during construction. J Bacteriol 181, 7143-7148 (1999).
    • (1999) J Bacteriol , vol.181 , pp. 7143-7148
    • Martinez-Morales, F.1    Borges, A.C.2    Martinez, A.3    Shanmugam, K.T.4    Ingram, L.O.5
  • 9
    • 84879744424 scopus 로고    scopus 로고
    • Rapid one-step inactivation of single or multiple genes in Escherichia coli
    • Song, C. W. & Lee, S. Y. Rapid one-step inactivation of single or multiple genes in Escherichia coli. Biotechnol J 8, 776-784 (2013).
    • (2013) Biotechnol J , vol.8 , pp. 776-784
    • Song, C.W.1    Lee, S.Y.2
  • 10
    • 84876816081 scopus 로고    scopus 로고
    • Construction of Escherichia coli strains with chromosomally integrated expression cassettes for the synthesis of 2'-fucosyllactose
    • Baumgartner, F., Seitz, L., Sprenger, G. A. & Albermann, C. Construction of Escherichia coli strains with chromosomally integrated expression cassettes for the synthesis of 2'-fucosyllactose. Microb Cell Fact 12, 40 (2013).
    • (2013) Microb Cell Fact , vol.12 , pp. 40
    • Baumgartner, F.1    Seitz, L.2    Sprenger, G.A.3    Albermann, C.4
  • 11
    • 84902147306 scopus 로고    scopus 로고
    • High-efficiency scarless genetic modification in Escherichia coli using Lambda-Red recombination and I-SceI cleavage
    • Yang, J. et al. High-efficiency scarless genetic modification in Escherichia coli using Lambda-Red recombination and I-SceI cleavage. Appl Environ Microbiol 80, 3826-3834 (2014).
    • (2014) Appl Environ Microbiol , vol.80 , pp. 3826-3834
    • Yang, J.1
  • 12
    • 77954705648 scopus 로고    scopus 로고
    • Construction and functional characterization of an integrative form lambda Red recombineering Escherichia coli strain
    • Song, J., Dong, H., Ma, C., Zhao, B. & Shang, G. Construction and functional characterization of an integrative form lambda Red recombineering Escherichia coli strain. FEMS Microbiol Lett 309, 178-183 (2010).
    • (2010) FEMS Microbiol Lett , vol.309 , pp. 178-183
    • Song, J.1    Dong, H.2    Ma, C.3    Zhao, B.4    Shang, G.5
  • 13
    • 84860376073 scopus 로고    scopus 로고
    • A PCR-free cloning method for the targeted Q80 Int-mediated integration of any long DNA fragment, bracketed with meganuclease recognition sites, into the Escherichia coli chromosome
    • Ublinskaya, A. A., Samsonov, V. V., Mashko, S. V. & Stoynova, N. V. A PCR-free cloning method for the targeted Q80 Int-mediated integration of any long DNA fragment, bracketed with meganuclease recognition sites, into the Escherichia coli chromosome. J Microbiol Methods 89, 167-173 (2012).
    • (2012) J Microbiol Methods , vol.89 , pp. 167-173
    • Ublinskaya, A.A.1    Samsonov, V.V.2    Mashko, S.V.3    Stoynova, N.V.4
  • 14
    • 77951278557 scopus 로고    scopus 로고
    • Site-specific chromosomal integration of large synthetic constructs
    • Kuhlman, T. E. & Cox, E. C. Site-specific chromosomal integration of large synthetic constructs. Nucleic Acids Res 38, e92 (2010).
    • (2010) Nucleic Acids Res , vol.38 , pp. e92
    • Kuhlman, T.E.1    Cox, E.C.2
  • 15
    • 84879225332 scopus 로고    scopus 로고
    • Knock-in/Knockout (KIKO) vectors for rapid integration of largeDNAsequences, including whole metabolic pathways, onto the Escherichia coli chromosome at well-characterised loci
    • Sabri, S., Steen, J. A., Bongers, M., Nielsen, L. K. & Vickers, C. E. Knock-in/Knockout (KIKO) vectors for rapid integration of largeDNAsequences, including whole metabolic pathways, onto the Escherichia coli chromosome at well-characterised loci. Microb Cell Fact 12, 60 (2013).
    • (2013) Microb Cell Fact , vol.12 , pp. 60
    • Sabri, S.1    Steen, J.A.2    Bongers, M.3    Nielsen, L.K.4    Vickers, C.E.5
  • 16
    • 0026937590 scopus 로고
    • Mechanistic aspects of DNA transposition
    • Haniford, D. B. & Chaconas, G. Mechanistic aspects of DNA transposition. Curr Opin Genet Dev 2, 698-704 (1992).
    • (1992) Curr Opin Genet Dev , vol.2 , pp. 698-704
    • Haniford, D.B.1    Chaconas, G.2
  • 17
    • 0026637325 scopus 로고
    • Transpositional recombination: Mechanistic insights from studies of Mu and other elements
    • Mizuuchi, K. Transpositional recombination: mechanistic insights from studies of Mu and other elements. Annu Rev Biochem 61, 1011-1051 (1992).
    • (1992) Annu Rev Biochem , vol.61 , pp. 1011-1051
    • Mizuuchi, K.1
  • 18
    • 77955560723 scopus 로고    scopus 로고
    • Amini-Mu transposon-based method for multipleDNAfragment integration into bacterial genomes
    • Wei, X. X. et al. Amini-Mu transposon-based method for multipleDNAfragment integration into bacterial genomes. Appl Microbiol Biotechnol 87, 1533-1541 (2010).
    • (2010) Appl Microbiol Biotechnol , vol.87 , pp. 1533-1541
    • Wei, X.X.1
  • 19
    • 0028148244 scopus 로고
    • Site-specific recombination: Developments and applications
    • Sauer, B. Site-specific recombination: developments and applications. Curr Opin Biotechnol 5, 521-527 (1994).
    • (1994) Curr Opin Biotechnol , vol.5 , pp. 521-527
    • Sauer, B.1
  • 20
    • 0035682064 scopus 로고    scopus 로고
    • Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria
    • Haldimann, A. & Wanner, B. L. Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria. J Bacteriol 183, 6384-6393 (2001).
    • (2001) J Bacteriol , vol.183 , pp. 6384-6393
    • Haldimann, A.1    Wanner, B.L.2
  • 21
    • 84884645140 scopus 로고    scopus 로고
    • One-step cloning and chromosomal integration of DNA
    • St-Pierre, F. et al. One-step cloning and chromosomal integration of DNA. ACS Synth Biol 2, 537-541 (2013).
    • (2013) ACS Synth Biol , vol.2 , pp. 537-541
    • St-Pierre, F.1
  • 22
    • 68449103617 scopus 로고    scopus 로고
    • Stabilized gene duplication enables long-term selection-free heterologous pathway expression
    • Tyo, K. E., Ajikumar, P. K. & Stephanopoulos, G. Stabilized gene duplication enables long-term selection-free heterologous pathway expression. Nat Biotechnol 27, 760-765 (2009).
    • (2009) Nat Biotechnol , vol.27 , pp. 760-765
    • Tyo, K.E.1    Ajikumar, P.K.2    Stephanopoulos, G.3
  • 23
    • 0022378550 scopus 로고
    • The FLP recombinase of the yeast 2-micron plasmid: Characterization of its recombination site
    • Senecoff, J. F., Bruckner, R. C. & Cox, M. M. The FLP recombinase of the yeast 2-micron plasmid: characterization of its recombination site. Proc Natl Acad Sci U S A 82, 7270-7274 (1985).
    • (1985) Proc Natl Acad Sci U S A , vol.82 , pp. 7270-7274
    • Senecoff, J.F.1    Bruckner, R.C.2    Cox, M.M.3
  • 24
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K. A. & Wanner, B. L. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97, 6640-6645 (2000).
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 25
    • 0030883633 scopus 로고    scopus 로고
    • Convenient and reversible site-specific targeting of exogenous DNA into a bacterial chromosome by use of the FLP recombinase: The FLIRT system
    • Huang, L.-C., Wood, E. A. & Cox, M. M. Convenient and reversible site-specific targeting of exogenous DNA into a bacterial chromosome by use of the FLP recombinase: the FLIRT system. J Bacteriol 179, 6076-6083 (1997).
    • (1997) J Bacteriol , vol.179 , pp. 6076-6083
    • Huang, L.-C.1    Wood, E.A.2    Cox, M.M.3
  • 26
    • 84857679736 scopus 로고    scopus 로고
    • One-step of tryptophan attenuator inactivation and promoter swapping to improve the production of L-tryptophan in Escherichia coli
    • Gu, P., Yang, F., Kang, J., Wang, Q. & Qi, Q. One-step of tryptophan attenuator inactivation and promoter swapping to improve the production of L-tryptophan in Escherichia coli. Microb Cell Fact 11, 30 (2012).
    • (2012) Microb Cell Fact , vol.11 , pp. 30
    • Gu, P.1    Yang, F.2    Kang, J.3    Wang, Q.4    Qi, Q.5
  • 27
    • 0027420061 scopus 로고
    • New suicide vector for gene replacement in yersiniae and other gram-negative bacteria
    • Skrzypek, E., Haddix, P. L., Plano, G. V. & Straley, S. C. New suicide vector for gene replacement in yersiniae and other gram-negative bacteria. Plasmid 29, 160-163 (1993).
    • (1993) Plasmid , vol.29 , pp. 160-163
    • Skrzypek, E.1    Haddix, P.L.2    Plano, G.V.3    Straley, S.C.4
  • 28
    • 0024524477 scopus 로고
    • Broad-host-range vectors for delivery of TnphoA: Use in genetic analysis of secreted virulence determinants of Vibrio cholerae
    • Taylor, R. K., Manoil, C. & Mekalanos, J. J. Broad-host-range vectors for delivery of TnphoA: use in genetic analysis of secreted virulence determinants of Vibrio cholerae. J Bacteriol 171, 1870-1878 (1989).
    • (1989) J Bacteriol , vol.171 , pp. 1870-1878
    • Taylor, R.K.1    Manoil, C.2    Mekalanos, J.J.3
  • 29
    • 31144476958 scopus 로고    scopus 로고
    • Towards bacterial strains overproducing L-tryptophan and other aromatics by metabolic engineering
    • Ikeda, M. Towards bacterial strains overproducing L-tryptophan and other aromatics by metabolic engineering. Appl Microbiol Biotechnol 69, 615-626 (2006).
    • (2006) Appl Microbiol Biotechnol , vol.69 , pp. 615-626
    • Ikeda, M.1
  • 30
    • 84921691891 scopus 로고    scopus 로고
    • Construction of an L-serine producing Escherichia coli via metabolic engineering
    • Gu, P. et al. Construction of an L-serine producing Escherichia coli via metabolic engineering. J Ind Microbiol 41, 1443-1450 (2014).
    • (2014) J Ind Microbiol , vol.41 , pp. 1443-1450
    • Gu, P.1
  • 31
    • 0034705144 scopus 로고    scopus 로고
    • An efficient recombination system for chromosome engineering in Escherichia coli
    • Yu, D. et al. An efficient recombination system for chromosome engineering in Escherichia coli. Proc Natl Acad Sci U S A 97, 5978-5983 (2000).
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 5978-5983
    • Yu, D.1
  • 32
  • 33
    • 0032573418 scopus 로고    scopus 로고
    • Comparative kinetic analysis of FLP and cre recombinases: Mathematical models for DNA binding and recombination
    • Ringrose, L. et al. Comparative kinetic analysis of FLP and cre recombinases: mathematical models for DNA binding and recombination. J Mol Biol 284, 363-384 (1998).
    • (1998) J Mol Biol , vol.284 , pp. 363-384
    • Ringrose, L.1
  • 34
    • 84863887258 scopus 로고    scopus 로고
    • Adjusting the attB site in donor plasmid improves the efficiency of WC31 integrase system
    • Xie, F. et al. Adjusting the attB site in donor plasmid improves the efficiency of WC31 integrase system. DNA Cell Biol 31, 1335-1340 (2012).
    • (2012) DNA Cell Biol , vol.31 , pp. 1335-1340
    • Xie, F.1
  • 35
    • 0026028997 scopus 로고
    • A bacterial model system for chromosomal targeting
    • Huang, L. C., Wood, E. A. & Cox, M. M. A bacterial model system for chromosomal targeting. Nucleic Acids Res 19, 443-448 (1991).
    • (1991) Nucleic Acids Res , vol.19 , pp. 443-448
    • Huang, L.C.1    Wood, E.A.2    Cox, M.M.3
  • 36
    • 0032485843 scopus 로고    scopus 로고
    • Artificial promoters for metabolic optimization
    • Jensen, P. R. & Hammer, K. Artificial promoters for metabolic optimization. Biotechnol Bioeng 58, 191-195 (1998).
    • (1998) Biotechnol Bioeng , vol.58 , pp. 191-195
    • Jensen, P.R.1    Hammer, K.2
  • 37
    • 3042607942 scopus 로고    scopus 로고
    • Expression of the pyrG gene determines the pool sizes of CTP and dCTP in Lactococcus lactis
    • Jorgensen, C. M., Hammer, K., Jensen, P. R. & Martinussen, J. Expression of the pyrG gene determines the pool sizes of CTP and dCTP in Lactococcus lactis. Eur J Biochem 271, 2438-2445 (2004).
    • (2004) Eur J Biochem , vol.271 , pp. 2438-2445
    • Jorgensen, C.M.1    Hammer, K.2    Jensen, P.R.3    Martinussen, J.4
  • 38
    • 0034461764 scopus 로고    scopus 로고
    • Regulatable arabinose-inducible gene expression system with consistent control in all cells of a culture
    • Khlebnikov, A., Risa, Ø., Skaug, T., Carrier, T. A. & Keasling, J. Regulatable arabinose-inducible gene expression system with consistent control in all cells of a culture. J Bacteriol 182, 7029-7034 (2000).
    • (2000) J Bacteriol , vol.182 , pp. 7029-7034
    • Khlebnikov, A.1    Risa Ø2    Skaug, T.3    Carrier, T.A.4    Keasling, J.5
  • 39
    • 84879774343 scopus 로고    scopus 로고
    • Quantifying translational coupling in E. Coli synthetic operons using RBS modulation and fluorescent reporters
    • Levin-Karp, A. et al. Quantifying translational coupling in E. coli synthetic operons using RBS modulation and fluorescent reporters. ACS Synth Biol 2, 327-336 (2013).
    • (2013) ACS Synth Biol , vol.2 , pp. 327-336
    • Levin-Karp, A.1
  • 40
    • 84868259206 scopus 로고    scopus 로고
    • Automated design of genetic toggle switches with predetermined bistability
    • Chen, S. et al. Automated design of genetic toggle switches with predetermined bistability. ACS Synth Biol 1, 284-290 (2012).
    • (2012) ACS Synth Biol , vol.1 , pp. 284-290
    • Chen, S.1
  • 41
    • 84879681227 scopus 로고    scopus 로고
    • Characterization of 582 natural and synthetic terminators and quantification of their design constraints
    • Chen, Y. J. et al. Characterization of 582 natural and synthetic terminators and quantification of their design constraints. Nat Methods 10, 659-664 (2013).
    • (2013) Nat Methods , vol.10 , pp. 659-664
    • Chen, Y.J.1
  • 42
    • 84861963767 scopus 로고    scopus 로고
    • Genome-scale promoter engineering by coselection MAGE
    • Wang, H. H. et al. Genome-scale promoter engineering by coselection MAGE. Nat methods 9, 591-593 (2012).
    • (2012) Nat Methods , vol.9 , pp. 591-593
    • Wang, H.H.1
  • 43
    • 68949161807 scopus 로고    scopus 로고
    • Programming cells by multiplex genome engineering and accelerated evolution
    • Wang, H. H. et al. Programming cells by multiplex genome engineering and accelerated evolution. Nature 460, 894-898 (2009).
    • (2009) Nature , vol.460 , pp. 894-898
    • Wang, H.H.1
  • 44
    • 84856586594 scopus 로고    scopus 로고
    • A strategy of gene overexpression based on tandem repetitive promoters in Escherichia coli
    • Li, M. et al. A strategy of gene overexpression based on tandem repetitive promoters in Escherichia coli. Microb Cell Fact 11, 19 (2012).
    • (2012) Microb Cell Fact , vol.11 , pp. 19
    • Li, M.1
  • 45
    • 84876073950 scopus 로고    scopus 로고
    • A new simple method for introducing an unmarked mutation into a large gene of non-competent gram-negative bacteria by FLP/FRT recombination
    • Ishikawa, M. & Hori, K. A new simple method for introducing an unmarked mutation into a large gene of non-competent gram-negative bacteria by FLP/FRT recombination. BMC Microbiol 13, 86 (2013).
    • (2013) BMC Microbiol , vol.13 , pp. 86
    • Ishikawa, M.1    Hori, K.2
  • 46
    • 84888779657 scopus 로고    scopus 로고
    • Tools for advanced and targeted genetic manipulation of the beta-lactam antibiotic producer Acremonium chrysogenum
    • Bloemendal, S. et al. Tools for advanced and targeted genetic manipulation of the beta-lactam antibiotic producer Acremonium chrysogenum. J Biotechnol 169, 51-62 (2014).
    • (2014) J Biotechnol , vol.169 , pp. 51-62
    • Bloemendal, S.1
  • 47
    • 84866171028 scopus 로고    scopus 로고
    • One-step sequence- and ligation-independent cloning as a rapid and versatile cloning method for functional genomics studies
    • Jeong, J. Y. et al. One-step sequence- and ligation-independent cloning as a rapid and versatile cloning method for functional genomics studies. Appl Environ Microbiol 78, 5440-5443 (2012).
    • (2012) Appl Environ Microbiol , vol.78 , pp. 5440-5443
    • Jeong, J.Y.1
  • 48
    • 33847302098 scopus 로고    scopus 로고
    • Low salt medium for lactate and ethanol production by recombinant Escherichia coli B
    • Martinez, A. et al. Low salt medium for lactate and ethanol production by recombinant Escherichia coli B. Biotechnol Lett 29, 397-404 (2007).
    • (2007) Biotechnol Lett , vol.29 , pp. 397-404
    • Martinez, A.1
  • 49
    • 0027191092 scopus 로고
    • Fluorometric determination of L-tryptophan with methoxyacetaldehyde
    • Iizuka, H. & Yajima, T. Fluorometric determination of L-tryptophan with methoxyacetaldehyde. Biol Pharm Bull 16, 103-106 (1993).
    • (1993) Biol Pharm Bull , vol.16 , pp. 103-106
    • Iizuka, H.1    Yajima, T.2


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