-
1
-
-
41649115999
-
DCL-1 colocalizes with other components of the MSUD machinery and is required for silencing
-
Alexander WG, Raju NB, Xiao H, Hammond TM, Perdue TD, Metzenberg RL, Pukkila PJ, Shiu PK (2008) DCL-1 colocalizes with other components of the MSUD machinery and is required for silencing. Fungal Genet Biol 45:719-727
-
(2008)
Fungal Genet Biol
, vol.45
, pp. 719-727
-
-
Alexander, W.G.1
Raju, N.B.2
Xiao, H.3
Hammond, T.M.4
Perdue, T.D.5
Metzenberg, R.L.6
Pukkila, P.J.7
Shiu, P.K.8
-
2
-
-
0037370020
-
A uniform system for microRNA annotation
-
Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, Chen X, Dreyfuss G, Eddy SR, Griffiths-Jones S, Marshall M et al (2003) A uniform system for microRNA annotation. RNA 9:277-279
-
(2003)
RNA
, vol.9
, pp. 277-279
-
-
Ambros, V.1
Bartel, B.2
Bartel, D.P.3
Burge, C.B.4
Carrington, J.C.5
Chen, X.6
Dreyfuss, G.7
Eddy, S.R.8
Griffiths-Jones, S.9
Marshall, M.10
-
3
-
-
0030581176
-
Meiotic transvection in fungi
-
Aramayo R, Metzenberg RL (1996) Meiotic transvection in fungi. Cell 86:103-113
-
(1996)
Cell
, vol.86
, pp. 103-113
-
-
Aramayo, R.1
Metzenberg, R.L.2
-
4
-
-
0029861752
-
Asm-1+, a Neurospora crassa gene related to transcriptional regulators of fungal development
-
Aramayo R, Peleg Y, Addison R, Metzenberg R (1996) Asm-1+, a Neurospora crassa gene related to transcriptional regulators of fungal development. Genetics 144:991-1003
-
(1996)
Genetics
, vol.144
, pp. 991-1003
-
-
Aramayo, R.1
Peleg, Y.2
Addison, R.3
Metzenberg, R.4
-
5
-
-
40849086680
-
Characterization of interactions between and among components of the meiotic silencing by unpaired DNA machinery in Neurospora crassa using bimolecular fluorescence complementation
-
Bardiya N, Alexander WG, Perdue TD, Barry EG, Metzenberg RL, Pukkila PJ, Shiu PK (2008) Characterization of interactions between and among components of the meiotic silencing by unpaired DNA machinery in Neurospora crassa using bimolecular fluorescence complementation. Genetics 178:593-596
-
(2008)
Genetics
, vol.178
, pp. 593-596
-
-
Bardiya, N.1
Alexander, W.G.2
Perdue, T.D.3
Barry, E.G.4
Metzenberg, R.L.5
Pukkila, P.J.6
Shiu, P.K.7
-
6
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116:281-297
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
7
-
-
79960953992
-
CHD1 remodels chromatin and influences transient DNA methylation at the clock gene frequency
-
Belden WJ, Lewis ZA, Selker EU, Loros JJ, Dunlap JC (2011) CHD1 remodels chromatin and influences transient DNA methylation at the clock gene frequency. PLoS Genet 7:e1002166
-
(2011)
PLoS Genet
, vol.7
, pp. e1002166
-
-
Belden, W.J.1
Lewis, Z.A.2
Selker, E.U.3
Loros, J.J.4
Dunlap, J.C.5
-
8
-
-
0035905766
-
Role for a bidentate ribonuclease in the initiation step of RNA interference
-
Bernstein E, Caudy AA, Hammond SM, Hannon GJ (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409:363-366
-
(2001)
Nature
, vol.409
, pp. 363-366
-
-
Bernstein, E.1
Caudy, A.A.2
Hammond, S.M.3
Hannon, G.J.4
-
9
-
-
84891038099
-
RNAi function, diversity, and loss in the fungal kingdom
-
Billmyre RB, Calo S, Feretzaki M, Wang X, Heitman J (2013) RNAi function, diversity, and loss in the fungal kingdom. Chromosome Res. doi:10.1007/s10577-10013-19388-10572
-
(2013)
Chromosome Res.
-
-
Billmyre, R.B.1
Calo, S.2
Feretzaki, M.3
Wang, X.4
Heitman, J.5
-
10
-
-
0035902443
-
Instability of repetitive DNA sequences: The role of replication in multiple mechanisms
-
Bzymek M, Lovett ST (2001) Instability of repetitive DNA sequences: The role of replication in multiple mechanisms. Proc Natl Acad Sci USA 98:8319-8325
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 8319-8325
-
-
Bzymek, M.1
Lovett, S.T.2
-
11
-
-
23944507608
-
Molecular anatomy and regulation of a stable replisome at a paused eukaryotic DNA replication fork
-
Calzada A, Hodgson B, Kanemaki M, Bueno A, Labib K (2005) Molecular anatomy and regulation of a stable replisome at a paused eukaryotic DNA replication fork. Genes Dev 19: 1905-1919
-
(2005)
Genes Dev
, vol.19
, pp. 1905-1919
-
-
Calzada, A.1
Hodgson, B.2
Kanemaki, M.3
Bueno, A.4
Labib, K.5
-
13
-
-
0036205131
-
Involvement of small RNAs and role of the Qde genes in the gene silencing pathway in Neurospora
-
Catalanotto C, Azzalin G, Macino G, Cogoni C (2002) Involvement of small RNAs and role of the Qde genes in the gene silencing pathway in Neurospora. Genes Dev 16:790-795
-
(2002)
Genes Dev
, vol.16
, pp. 790-795
-
-
Catalanotto, C.1
Azzalin, G.2
Macino, G.3
Cogoni, C.4
-
14
-
-
1542344324
-
Redundancy of the two dicer genes in transgene-induced posttranscriptional gene silencing in Neurospora crassa
-
Catalanotto C, Pallotta M, ReFalo P, Sachs MS, Vayssie L, Macino G, Cogoni C (2004) Redundancy of the two dicer genes in transgene-induced posttranscriptional gene silencing in Neurospora crassa. Mol Cell Biol 24:2536-2545
-
(2004)
Mol Cell Biol
, vol.24
, pp. 2536-2545
-
-
Catalanotto, C.1
Pallotta, M.2
Refalo, P.3
Sachs, M.S.4
Vayssie, L.5
Macino, G.6
Cogoni, C.7
-
15
-
-
84870487730
-
RNA interference pathways in fungi: Mechanisms and functions
-
Chang SS, Zhang Z, Liu Y (2012) RNA interference pathways in fungi: mechanisms and functions. Annu Rev Microbiol 66:305-323
-
(2012)
Annu Rev Microbiol
, vol.66
, pp. 305-323
-
-
Chang, S.S.1
Zhang, Z.2
Liu, Y.3
-
16
-
-
77953183812
-
A dicer-independent miRNA biogenesis pathway that requires Ago catalysis
-
Cheloufi S, Dos Santos CO, Chong MM, Hannon GJ (2010) A dicer-independent miRNA biogenesis pathway that requires Ago catalysis. Nature 465:584-589
-
(2010)
Nature
, vol.465
, pp. 584-589
-
-
Cheloufi, S.1
Dos Santos, C.O.2
Chong, M.M.3
Hannon, G.J.4
-
17
-
-
53549113067
-
OsRecQ1, a Qde-3 homologue in rice, is required for RNA silencing induced by particle bombardment for inverted repeat DNA, but not for doublestranded RNA
-
Chen H, Samadder PP, Tanaka Y, Ohira T, Okuizumi H, Yamaoka N, Miyao A, Hirochika H, Tsuchimoto S, Ohtsubo H et al (2008) OsRecQ1, a Qde-3 homologue in rice, is required for RNA silencing induced by particle bombardment for inverted repeat DNA, but not for doublestranded RNA. Plant J 56:274-286
-
(2008)
Plant J
, vol.56
, pp. 274-286
-
-
Chen, H.1
Samadder, P.P.2
Tanaka, Y.3
Ohira, T.4
Okuizumi, H.5
Yamaoka, N.6
Miyao, A.7
Hirochika, H.8
Tsuchimoto, S.9
Ohtsubo, H.10
-
18
-
-
77953897182
-
A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity
-
Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND et al (2010) A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity. Science 328:1694-1698
-
(2010)
Science
, vol.328
, pp. 1694-1698
-
-
Cifuentes, D.1
Xue, H.2
Taylor, D.W.3
Patnode, H.4
Mishima, Y.5
Cheloufi, S.6
Ma, E.7
Mane, S.8
Hannon, G.J.9
Lawson, N.D.10
-
19
-
-
0029934123
-
Transgene silencing of the al-1 gene in vegetative cells of Neurospora is mediated by a cytoplasmic effector and does not depend on DNA-DNA interactions or DNA methylation
-
Cogoni C, Irelan JT, Schumacher M, Schmidhauser TJ, Selker EU, Macino G (1996) Transgene silencing of the al-1 gene in vegetative cells of Neurospora is mediated by a cytoplasmic effector and does not depend on DNA-DNA interactions or DNA methylation. EMBO J 15:3153-3163
-
(1996)
EMBO J
, vol.15
, pp. 3153-3163
-
-
Cogoni, C.1
Irelan, J.T.2
Schumacher, M.3
Schmidhauser, T.J.4
Selker, E.U.5
Macino, G.6
-
20
-
-
0030885595
-
Isolation of quelling-defective (Qde) mutants impaired in posttranscriptional transgene-induced gene silencing in Neurospora crassa
-
Cogoni C, Macino G (1997) Isolation of quelling-defective (Qde) mutants impaired in posttranscriptional transgene-induced gene silencing in Neurospora crassa. Proc Natl Acad Sci USA 94:10233-10238
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 10233-10238
-
-
Cogoni, C.1
Macino, G.2
-
21
-
-
0033551328
-
Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase
-
Cogoni C, Macino G (1999a) Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase. Nature 399:166-169
-
(1999)
Nature
, vol.399
, pp. 166-169
-
-
Cogoni, C.1
Macino, G.2
-
22
-
-
0033579344
-
Posttranscriptional gene silencing in Neurospora by a RecQ DNA helicase
-
Cogoni C, Macino G (1999b) Posttranscriptional gene silencing in Neurospora by a RecQ DNA helicase. Science 286:2342-2344
-
(1999)
Science
, vol.286
, pp. 2342-2344
-
-
Cogoni, C.1
Macino, G.2
-
23
-
-
0028086425
-
Suppression of gene expression by homologous transgenes
-
Cogoni C, Romano N, Macino G (1994) Suppression of gene expression by homologous transgenes. Antonie Van Leeuwenhoek 65:205-209
-
(1994)
Antonie Van Leeuwenhoek
, vol.65
, pp. 205-209
-
-
Cogoni, C.1
Romano, N.2
Macino, G.3
-
24
-
-
33745924142
-
A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors
-
Colot HV, Park G, Turner GE, Ringelberg C, Crew CM, Litvinkova L, Weiss RL, Borkovich KA, Dunlap JC (2006) A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors. Proc Natl Acad Sci USA 103:10352-10357
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 10352-10357
-
-
Colot, H.V.1
Park, G.2
Turner, G.E.3
Ringelberg, C.4
Crew, C.M.5
Litvinkova, L.6
Weiss, R.L.7
Borkovich, K.A.8
Dunlap, J.C.9
-
26
-
-
0022313127
-
Phenocopy of discoidin I-minus mutants by antisense transformation in Dictyostelium
-
Crowley TE, Nellen W, Gomer RH, Firtel RA (1985) Phenocopy of discoidin I-minus mutants by antisense transformation in Dictyostelium. Cell 43:633-641
-
(1985)
Cell
, vol.43
, pp. 633-641
-
-
Crowley, T.E.1
Nellen, W.2
Gomer, R.H.3
Firtel, R.A.4
-
27
-
-
84884683575
-
Convergent transcription induces dynamic DNA methylation at disiRNA loci
-
Dang Y, Li L, Guo W, Xue Z, Liu Y (2013) Convergent transcription induces dynamic DNA methylation at disiRNA loci. PLoS Genet 9:e1003761
-
(2013)
PLoS Genet
, vol.9
, pp. e1003761
-
-
Dang, Y.1
Li, L.2
Guo, W.3
Xue, Z.4
Liu, Y.5
-
28
-
-
80052358517
-
RNA interference in fungi: Pathways, functions, and applications
-
Dang Y, Yang Q, Xue Z, Liu Y (2011) RNA interference in fungi: pathways, functions, and applications. Eukaryot Cell 10:1148-1155
-
(2011)
Eukaryot Cell
, vol.10
, pp. 1148-1155
-
-
Dang, Y.1
Yang, Q.2
Xue, Z.3
Liu, Y.4
-
29
-
-
25844480848
-
RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing
-
Djupedal I, Portoso M, Spahr H, Bonilla C, Gustafsson CM, Allshire RC, Ekwall K (2005) RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing. Genes Dev 19:2301-2306
-
(2005)
Genes Dev
, vol.19
, pp. 2301-2306
-
-
Djupedal, I.1
Portoso, M.2
Spahr, H.3
Bonilla, C.4
Gustafsson, C.M.5
Allshire, R.C.6
Ekwall, K.7
-
30
-
-
0022441296
-
Inhibition of gene expression in plant cells by expression of antisense RNA
-
Ecker JR, Davis RW (1986) Inhibition of gene expression in plant cells by expression of antisense RNA. Proc Natl Acad Sci USA 83:5372-5376
-
(1986)
Proc Natl Acad Sci USA
, vol.83
, pp. 5372-5376
-
-
Ecker, J.R.1
Davis, R.W.2
-
31
-
-
0035942736
-
Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
-
Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K, Tuschl T (2001) Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411:494-498
-
(2001)
Nature
, vol.411
, pp. 494-498
-
-
Elbashir, S.M.1
Harborth, J.2
Lendeckel, W.3
Yalcin, A.4
Weber, K.5
Tuschl, T.6
-
32
-
-
0032545933
-
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
-
Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391:806-811
-
(1998)
Nature
, vol.391
, pp. 806-811
-
-
Fire, A.1
Xu, S.2
Montgomery, M.K.3
Kostas, S.A.4
Driver, S.E.5
Mello, C.C.6
-
33
-
-
84864647205
-
Site-specific DICER and DROSHA RNA products control the DNAdamage response
-
Francia S, Michelini F, Saxena A, Tang D, de Hoon M, Anelli V, Mione M, Carninci P, d'Adda di Fagagna F (2012) Site-specific DICER and DROSHA RNA products control the DNAdamage response. Nature 488: 231-235
-
(2012)
Nature
, vol.488
, pp. 231-235
-
-
Francia, S.1
Michelini, F.2
Saxena, A.3
Tang, D.4
De Hoon, M.5
Anelli, V.6
Mione, M.7
Carninci, P.8
D'adda Di Fagagna, F.9
-
34
-
-
3042569778
-
DNA methylation is independent of RNA interference in Neurospora
-
Freitag M, Lee DW, Kothe GO, Pratt RJ, Aramayo R, Selker EU (2004) DNA methylation is independent of RNA interference in Neurospora. Science 304:1939
-
(2004)
Science
, vol.304
, pp. 1939
-
-
Freitag, M.1
Lee, D.W.2
Kothe, G.O.3
Pratt, R.J.4
Aramayo, R.5
Selker, E.U.6
-
35
-
-
34247116457
-
Quelling: Post-transcriptional gene silencing guided by small RNAs in Neurospora crassa
-
Fulci V, Macino G (2007) Quelling: post-transcriptional gene silencing guided by small RNAs in Neurospora crassa. Curr Opin Microbiol 10:199-203
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 199-203
-
-
Fulci, V.1
Macino, G.2
-
36
-
-
0037464589
-
The genome sequence of the filamentous fungus Neurospora crassa
-
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S et al (2003) The genome sequence of the filamentous fungus Neurospora crassa. Nature 422:859-868
-
(2003)
Nature
, vol.422
, pp. 859-868
-
-
Galagan, J.E.1
Calvo, S.E.2
Borkovich, K.A.3
Selker, E.U.4
Read, N.D.5
Jaffe, D.6
Fitzhugh, W.7
Ma, L.J.8
Smirnov, S.9
Purcell, S.10
-
37
-
-
4143050271
-
RIP: The evolutionary cost of genome defense
-
Galagan JE, Selker EU (2004) RIP: The evolutionary cost of genome defense. Trends Genet 20:417-423
-
(2004)
Trends Genet
, vol.20
, pp. 417-423
-
-
Galagan, J.E.1
Selker, E.U.2
-
38
-
-
55249115975
-
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
-
Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP (2008) Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature 455:1193-1197
-
(2008)
Nature
, vol.455
, pp. 1193-1197
-
-
Grimson, A.1
Srivastava, M.2
Fahey, B.3
Woodcroft, B.J.4
Chiang, H.R.5
King, N.6
Degnan, B.M.7
Rokhsar, D.S.8
Bartel, D.P.9
-
39
-
-
0033615491
-
A species of small antisense RNA in posttranscriptional gene silencing in plants
-
Hamilton AJ, Baulcombe DC (1999) A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286:950-952
-
(1999)
Science
, vol.286
, pp. 950-952
-
-
Hamilton, A.J.1
Baulcombe, D.C.2
-
40
-
-
0035839109
-
Argonaute2, a link between genetic and biochemical analyses of RNAi
-
Hammond SM, Boettcher S, Caudy AA, Kobayashi R, Hannon GJ (2001) Argonaute2, a link between genetic and biochemical analyses of RNAi. Science 293:1146-1150
-
(2001)
Science
, vol.293
, pp. 1146-1150
-
-
Hammond, S.M.1
Boettcher, S.2
Caudy, A.A.3
Kobayashi, R.4
Hannon, G.J.5
-
41
-
-
84877087098
-
Identification of small RNAs associated with meiotic silencing by unpaired DNA
-
Hammond TM, Spollen WG, Decker LM, Blake SM, Springer GK, Shiu PK (2013a) Identification of small RNAs associated with meiotic silencing by unpaired DNA. Genetics 194:279-284
-
(2013)
Genetics
, vol.194
, pp. 279-284
-
-
Hammond, T.M.1
Spollen, W.G.2
Decker, L.M.3
Blake, S.M.4
Springer, G.K.5
Shiu, P.K.6
-
42
-
-
84877097328
-
Novel proteins required for meiotic silencing by unpaired DNA and siRNA generation in Neurospora crassa
-
Hammond TM, Xiao H, Boone EC, Decker LM, Lee SA, Perdue TD, Pukkila PJ, Shiu PK (2013b) Novel proteins required for meiotic silencing by unpaired DNA and siRNA generation in Neurospora crassa. Genetics 194:91-100
-
(2013)
Genetics
, vol.194
, pp. 91-100
-
-
Hammond, T.M.1
Xiao, H.2
Boone, E.C.3
Decker, L.M.4
Lee, S.A.5
Perdue, T.D.6
Pukkila, P.J.7
Shiu, P.K.8
-
43
-
-
84864361477
-
Sad-3, a putative helicase required for meiotic silencing by unpaired DNA interacts with other components of the silencing machinery
-
Hammond TM, Xiao H, Boone EC, Perdue TD, Pukkila PJ, Shiu PK (2011) Sad-3, a putative helicase required for meiotic silencing by unpaired DNA interacts with other components of the silencing machinery. G3 1:369-376
-
(2011)
G3
, vol.1
, pp. 369-376
-
-
Hammond, T.M.1
Xiao, H.2
Boone, E.C.3
Perdue, T.D.4
Pukkila, P.J.5
Shiu, P.K.6
-
44
-
-
0035204487
-
Septum formation in Aspergillus nidulans
-
Harris SD (2001) Septum formation in Aspergillus nidulans. Curr Opin Microbiol 4:736-739
-
(2001)
Curr Opin Microbiol
, vol.4
, pp. 736-739
-
-
Harris, S.D.1
-
45
-
-
0034499304
-
Recognition and silencing of repeated DNA
-
Hsieh J, Fire A (2000) Recognition and silencing of repeated DNA. Annu Rev Genet 34:187-204
-
(2000)
Annu Rev Genet
, vol.34
, pp. 187-204
-
-
Hsieh, J.1
Fire, A.2
-
46
-
-
33751112515
-
Inhibition of homologous recombination by a cohesin-associated clamp complex recruited to the rDNA recombination enhancer
-
Huang J, Brito IL, Villen J, Gygi SP, Amon A, Moazed D (2006) Inhibition of homologous recombination by a cohesin-associated clamp complex recruited to the rDNA recombination enhancer. Genes Dev 20:2887-2901
-
(2006)
Genes Dev
, vol.20
, pp. 2887-2901
-
-
Huang, J.1
Brito, I.L.2
Villen, J.3
Gygi, S.P.4
Amon, A.5
Moazed, D.6
-
47
-
-
84871537672
-
Identification and functional demonstration of miRNAs in the fungus Cryptococcus neoformans
-
Jiang N, Yang Y, Janbon G, Pan J, Zhu X (2012) Identification and functional demonstration of miRNAs in the fungus Cryptococcus neoformans. PLoS ONE 7:e52734
-
(2012)
PLoS ONE
, vol.7
, pp. e52734
-
-
Jiang, N.1
Yang, Y.2
Janbon, G.3
Pan, J.4
Zhu, X.5
-
48
-
-
1242274561
-
The Neurospora crassa Mus-19 gene is identical to the Qde-3 gene, which encodes a RecQ homologue and is involved in recombination repair and postreplication repair
-
Kato A, Akamatsu Y, Sakuraba Y, Inoue H (2004) The Neurospora crassa Mus-19 gene is identical to the Qde-3 gene, which encodes a RecQ homologue and is involved in recombination repair and postreplication repair. Curr Genet 45:37-44
-
(2004)
Curr Genet
, vol.45
, pp. 37-44
-
-
Kato, A.1
Akamatsu, Y.2
Sakuraba, Y.3
Inoue, H.4
-
49
-
-
80052991624
-
3' end formation of PIWI-interacting RNAs in vitro
-
Kawaoka S, Izumi N, Katsuma S, Tomari Y (2011) 3' end formation of PIWI-interacting RNAs in vitro. Mol Cell 43:1015-1022
-
(2011)
Mol Cell
, vol.43
, pp. 1015-1022
-
-
Kawaoka, S.1
Izumi, N.2
Katsuma, S.3
Tomari, Y.4
-
50
-
-
0022410913
-
Stable reduction of thymidine kinase activity in cells expressing high levels of anti-sense RNA
-
Kim SK, Wold BJ (1985) Stable reduction of thymidine kinase activity in cells expressing high levels of anti-sense RNA. Cell 42:129-138
-
(1985)
Cell
, vol.42
, pp. 129-138
-
-
Kim, S.K.1
Wold, B.J.2
-
51
-
-
0025094221
-
Tad, a line-like transposable element of Neurospora, can transpose between nuclei in heterokaryons
-
Kinsey JA (1990) Tad, a line-like transposable element of Neurospora, can transpose between nuclei in heterokaryons. Genetics 126:317-323
-
(1990)
Genetics
, vol.126
, pp. 317-323
-
-
Kinsey, J.A.1
-
52
-
-
4644291834
-
Swi1-and swi3-dependent and independent replication fork arrest at the ribosomal DNA of Schizosaccharomyces pombe
-
Krings G, Bastia D (2004) swi1-and swi3-dependent and independent replication fork arrest at the ribosomal DNA of Schizosaccharomyces pombe. Proc Natl Acad Sci USA 101:14085-14090
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 14085-14090
-
-
Krings, G.1
Bastia, D.2
-
53
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T (2001) Identification of novel genes coding for small expressed RNAs. Science 294:853-858
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
-
54
-
-
33746527679
-
Characterization of the piRNA complex from rat testes
-
Lau NC, Seto AG, Kim J, Kuramochi-Miyagawa S, Nakano T, Bartel DP, Kingston RE (2006) Characterization of the piRNA complex from rat testes. Science 313:363-367
-
(2006)
Science
, vol.313
, pp. 363-367
-
-
Lau, N.C.1
Seto, A.G.2
Kim, J.3
Kuramochi-Miyagawa, S.4
Nakano, T.5
Bartel, D.P.6
Kingston, R.E.7
-
55
-
-
84883319233
-
Identification of MicroRNA-Like RNAs in Mycelial and yeast phases of the thermal dimorphic fungus Penicillium marneffei
-
Lau SKP, Chow WN, Wong AYP, Yeung JMY, Bao J, Zhang N, Lok S, Woo PCY, Yuen KY (2013) Identification of MicroRNA-Like RNAs in Mycelial and yeast phases of the thermal dimorphic fungus Penicillium marneffei. Plos Neglected Trop Dis 7:e2398
-
(2013)
Plos Neglected Trop Dis
, vol.7
, pp. e2398
-
-
Lau, S.K.P.1
Chow, W.N.2
Wong, A.Y.P.3
Yeung, J.M.Y.4
Bao, J.5
Zhang, N.6
Lok, S.7
Woo, P.C.Y.8
Yuen, K.Y.9
-
56
-
-
78751676211
-
QIP, a component of the vegetative RNA silencing pathway, is essential for meiosis and suppresses meiotic silencing in Neurospora crassa
-
Lee DW, Millimaki R, Aramayo R (2010a) QIP, a component of the vegetative RNA silencing pathway, is essential for meiosis and suppresses meiotic silencing in Neurospora crassa. Genetics 186:127-133
-
(2010)
Genetics
, vol.186
, pp. 127-133
-
-
Lee, D.W.1
Millimaki, R.2
Aramayo, R.3
-
57
-
-
78149396720
-
The DNA/RNA-dependent RNA polymerase Qde-1 generates aberrant RNA and dsRNA for RNAi in a process requiring replication protein A and a DNA helicase
-
Lee HC, Aalto AP, Yang Q, Chang SS, Huang G, Fisher D, Cha J, Poranen MM, Bamford DH, Liu Y (2010b) The DNA/RNA-dependent RNA polymerase Qde-1 generates aberrant RNA and dsRNA for RNAi in a process requiring replication protein A and a DNA helicase. PLoS Biol 8:e1000496
-
(2010)
PLoS Biol
, vol.8
, pp. e1000496
-
-
Lee, H.C.1
Aalto, A.P.2
Yang, Q.3
Chang, S.S.4
Huang, G.5
Fisher, D.6
Cha, J.7
Poranen, M.M.8
Bamford, D.H.9
Liu, Y.10
-
58
-
-
66149084316
-
QiRNA is a new type of small interfering RNA induced by DNA damage
-
Lee HC, Chang SS, Choudhary S, Aalto AP, Maiti M, Bamford DH, Liu Y (2009) qiRNA is a new type of small interfering RNA induced by DNA damage. Nature 459:274-277
-
(2009)
Nature
, vol.459
, pp. 274-277
-
-
Lee, H.C.1
Chang, S.S.2
Choudhary, S.3
Aalto, A.P.4
Maiti, M.5
Bamford, D.H.6
Liu, Y.7
-
59
-
-
77950929337
-
Diverse pathways generate microRNA-like RNAs and Dicerindependent small interfering RNAs in fungi
-
Lee HC, Li L, Gu W, Xue Z, Crosthwaite SK, Pertsemlidis A, Lewis ZA, Freitag M, Selker EU, Mello CC et al (2010c) Diverse pathways generate microRNA-like RNAs and Dicerindependent small interfering RNAs in fungi. Mol Cell 38:803-814
-
(2010)
Mol Cell
, vol.38
, pp. 803-814
-
-
Lee, H.C.1
Li, L.2
Gu, W.3
Xue, Z.4
Crosthwaite, S.K.5
Pertsemlidis, A.6
Lewis, Z.A.7
Freitag, M.8
Selker, E.U.9
Mello, C.C.10
-
60
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
Lee RC, Ambros V (2001) An extensive class of small RNAs in Caenorhabditis elegans. Science 294:862-864
-
(2001)
Science
, vol.294
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
61
-
-
0027751663
-
The C. elegans heterochronic gene Lin-4 encodes small RNAs with antisense complementarity to Lin-14
-
Lee RC, Feinbaum RL, Ambros V (1993) The C. elegans heterochronic gene Lin-4 encodes small RNAs with antisense complementarity to Lin-14. Cell 75:843-854
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
62
-
-
78149470354
-
RNA interference pathways in filamentous fungi
-
Li L, S-S Chang, Liu Y (2010a) RNA interference pathways in filamentous fungi. Cell Mol Life Sci 67:3849-3863
-
(2010)
Cell Mol Life Sci
, vol.67
, pp. 3849-3863
-
-
Li, L.1
Chang, S.-S.2
Liu, Y.3
-
63
-
-
78149470354
-
RNA interference pathways in filamentous fungi
-
Li L, Chang SS, Liu Y (2010b) RNA interference pathways in filamentous fungi. Cell Mol Life Sci 67:3849-3863
-
(2010)
Cell Mol Life Sci
, vol.67
, pp. 3849-3863
-
-
Li, L.1
Chang, S.S.2
Liu, Y.3
-
64
-
-
68449090733
-
C3PO, an endoribonuclease that promotes RNAi by facilitating RISC activation
-
Liu Y, Ye X, Jiang F, Liang C, Chen D, Peng J, Kinch LN, Grishin NV, Liu Q (2009) C3PO, an endoribonuclease that promotes RNAi by facilitating RISC activation. Science 325:750-753
-
(2009)
Science
, vol.325
, pp. 750-753
-
-
Liu, Y.1
Ye, X.2
Jiang, F.3
Liang, C.4
Chen, D.5
Peng, J.6
Kinch, L.N.7
Grishin, N.V.8
Liu, Q.9
-
66
-
-
84880917068
-
PIWI-interacting RNAs: From generation to transgenerational epigenetics
-
Luteijn MJ, Ketting RF (2013) PIWI-interacting RNAs: from generation to transgenerational epigenetics. Nat Rev Genet 14:523-534
-
(2013)
Nat Rev Genet
, vol.14
, pp. 523-534
-
-
Luteijn, M.J.1
Ketting, R.F.2
-
67
-
-
33947153420
-
QIP, a putative exonuclease, interacts with the Neurospora Argonaute protein and facilitates conversion of duplex siRNA into single strands
-
Maiti M, Lee HC, Liu Y (2007) QIP, a putative exonuclease, interacts with the Neurospora Argonaute protein and facilitates conversion of duplex siRNA into single strands. Genes Dev 21:590-600
-
(2007)
Genes Dev
, vol.21
, pp. 590-600
-
-
Maiti, M.1
Lee, H.C.2
Liu, Y.3
-
69
-
-
32244447176
-
The Tof1p-Csm3p protein complex counteracts the Rrm3p helicase to control replication termination of Saccharomyces cerevisiae
-
Mohanty BK, Bairwa NK, Bastia D (2006) The Tof1p-Csm3p protein complex counteracts the Rrm3p helicase to control replication termination of Saccharomyces cerevisiae. Proc Natl Acad Sci USA 103:897-902
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 897-902
-
-
Mohanty, B.K.1
Bairwa, N.K.2
Bastia, D.3
-
70
-
-
34347355440
-
MiRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
-
Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC (2007) miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature 447:1126-1129
-
(2007)
Nature
, vol.447
, pp. 1126-1129
-
-
Molnar, A.1
Schwach, F.2
Studholme, D.J.3
Thuenemann, E.C.4
Baulcombe, D.C.5
-
72
-
-
0001359591
-
Introduction of a chimeric chalcone synthase gene into petunia results in reversible co-suppression of homologous Genes in trans
-
Napoli C, Lemieux C, Jorgensen R (1990) Introduction of a chimeric chalcone synthase gene into petunia results in reversible co-suppression of homologous Genes in trans. Plant Cell 2:279-289
-
(1990)
Plant Cell
, vol.2
, pp. 279-289
-
-
Napoli, C.1
Lemieux, C.2
Jorgensen, R.3
-
73
-
-
15044340327
-
The post-transcriptional gene silencing machinery functions independently of DNA methylation to repress a Line1-like retrotransposon in Neurospora crassa
-
Nolan T, Braccini L, Azzalin G, De Toni A, Macino G, Cogoni C (2005) The post-transcriptional gene silencing machinery functions independently of DNA methylation to repress a Line1-like retrotransposon in Neurospora crassa. Nucleic Acids Res 33:1564-1573
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1564-1573
-
-
Nolan, T.1
Braccini, L.2
Azzalin, G.3
De Toni, A.4
Macino, G.5
Cogoni, C.6
-
74
-
-
39149126696
-
The RNAdependent RNA polymerase essential for post-transcriptional gene silencing in Neurospora crassa interacts with replication protein A
-
Nolan T, Cecere G, Mancone C, Alonzi T, Tripodi M, Catalanotto C, Cogoni C (2008) The RNAdependent RNA polymerase essential for post-transcriptional gene silencing in Neurospora crassa interacts with replication protein A. Nucleic Acids Res 36:532-538
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 532-538
-
-
Nolan, T.1
Cecere, G.2
Mancone, C.3
Alonzi, T.4
Tripodi, M.5
Catalanotto, C.6
Cogoni, C.7
-
75
-
-
0037279866
-
The Qde-3 homologue RecQ-2 co-operates with Qde-3 in DNA repair in Neurospora crassa
-
Pickford A, Braccini L, Macino G, Cogoni C (2003) The Qde-3 homologue RecQ-2 co-operates with Qde-3 in DNA repair in Neurospora crassa. Curr Genet 42:220-227
-
(2003)
Curr Genet
, vol.42
, pp. 220-227
-
-
Pickford, A.1
Braccini, L.2
Macino, G.3
Cogoni, C.4
-
76
-
-
0019271882
-
Meiosis and ascospore genesis in Neurospora
-
Raju NB (1980) Meiosis and ascospore genesis in Neurospora. Eur J Cell Biol 23:208-223
-
(1980)
Eur J Cell Biol
, vol.23
, pp. 208-223
-
-
Raju, N.B.1
-
77
-
-
0000012737
-
Genetic-control of the sexual cycle in Neurospora
-
Raju NB (1992) Genetic-control of the sexual cycle in Neurospora. Mycol Res 96:241-262
-
(1992)
Mycol Res
, vol.96
, pp. 241-262
-
-
Raju, N.B.1
-
78
-
-
0030992349
-
A similarity between viral defense and gene silencing in plants
-
Ratcliff F, Harrison BD, Baulcombe DC (1997) A similarity between viral defense and gene silencing in plants. Science 276:1558-1560
-
(1997)
Science
, vol.276
, pp. 1558-1560
-
-
Ratcliff, F.1
Harrison, B.D.2
Baulcombe, D.C.3
-
79
-
-
0026441194
-
Quelling: Transient inactivation of gene expression in Neurospora crassa by transformation with homologous sequences
-
Romano N, Macino G (1992) Quelling: transient inactivation of gene expression in Neurospora crassa by transformation with homologous sequences. Mol Microbiol 6:3343-3353
-
(1992)
Mol Microbiol
, vol.6
, pp. 3343-3353
-
-
Romano, N.1
Macino, G.2
-
80
-
-
33845485312
-
The structure of an RNAi polymerase links RNA silencing and transcription
-
Salgado PS, Koivunen MR, Makeyev EV, Bamford DH, Stuart DI, Grimes JM (2006) The structure of an RNAi polymerase links RNA silencing and transcription. PLoS Biol 4:e434
-
(2006)
PLoS Biol
, vol.4
, pp. e434
-
-
Salgado, P.S.1
Koivunen, M.R.2
Makeyev, E.V.3
Bamford, D.H.4
Stuart, D.I.5
Grimes, J.M.6
-
81
-
-
21744462775
-
RNAinterference-directed chromatin modification coupled to RNA polymerase II transcription
-
Schramke V, Sheedy DM, Denli AM, Bonila C, Ekwall K, Hannon GJ, Allshire RC (2005) RNAinterference-directed chromatin modification coupled to RNA polymerase II transcription. Nature 435:1275-1279
-
(2005)
Nature
, vol.435
, pp. 1275-1279
-
-
Schramke, V.1
Sheedy, D.M.2
Denli, A.M.3
Bonila, C.4
Ekwall, K.5
Hannon, G.J.6
Allshire, R.C.7
-
82
-
-
0036372893
-
Repeat-induced gene silencing in fungi
-
Selker EU (2002) Repeat-induced gene silencing in fungi. Adv Genet 46:439-450
-
(2002)
Adv Genet
, vol.46
, pp. 439-450
-
-
Selker, E.U.1
-
83
-
-
84878919248
-
Non-coding RNAs in DNA damage and repair
-
Sharma V, Misteli T (2013) Non-coding RNAs in DNA damage and repair. FEBS Lett 587:1832-1839
-
(2013)
FEBS Lett
, vol.587
, pp. 1832-1839
-
-
Sharma, V.1
Misteli, T.2
-
85
-
-
33144465730
-
Sad-2 is required for meiotic silencing by unpaired DNA and perinuclear localization of Sad-1 RNA-directed RNA polymerase
-
Shiu PK, Zickler D, Raju NB, Ruprich-Robert G, Metzenberg RL (2006) Sad-2 is required for meiotic silencing by unpaired DNA and perinuclear localization of Sad-1 RNA-directed RNA polymerase. Proc Nat Acad Sci U S A 103:2243-2248
-
(2006)
Proc Nat Acad Sci U S A
, vol.103
, pp. 2243-2248
-
-
Shiu, P.K.1
Zickler, D.2
Raju, N.B.3
Ruprich-Robert, G.4
Metzenberg, R.L.5
-
86
-
-
80052405290
-
Protection of repetitive DNA borders from self-induced meiotic instability
-
Vader G, Blitzblau HG, Tame MA, Falk JE, Curtin L, Hochwagen A (2011) Protection of repetitive DNA borders from self-induced meiotic instability. Nature 477:115-119
-
(2011)
Nature
, vol.477
, pp. 115-119
-
-
Vader, G.1
Blitzblau, H.G.2
Tame, M.A.3
Falk, J.E.4
Curtin, L.5
Hochwagen, A.6
-
87
-
-
0028322448
-
Transgene-mediated suppression of chalcone synthase expression in Petunia hybrida results from an increase in RNA turnover
-
Van Blokland R, Van der Geest N, Mol JNM, Kooter JM (1994) Transgene-mediated suppression of chalcone synthase expression in Petunia hybrida results from an increase in RNA turnover. Plant J 6:861-877
-
(1994)
Plant J
, vol.6
, pp. 861-877
-
-
Van Blokland, R.1
Van Der Geest, N.2
Mol, J.N.M.3
Kooter, J.M.4
-
88
-
-
0942279635
-
RNAi-mediated targeting of heterochromatin by the RITS complex
-
Verdel A, Jia S, Gerber S, Sugiyama T, Gygi S, Grewal SI, Moazed D (2004) RNAi-mediated targeting of heterochromatin by the RITS complex. Science 303:672-676
-
(2004)
Science
, vol.303
, pp. 672-676
-
-
Verdel, A.1
Jia, S.2
Gerber, S.3
Sugiyama, T.4
Gygi, S.5
Grewal, S.I.6
Moazed, D.7
-
89
-
-
57749206034
-
Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex
-
Wang YL, Juranek S, Li HT, Sheng G, Tuschl T, Patel DJ (2008a) Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex. Nature 456:U921-U972
-
(2008)
Nature
, vol.456
, pp. U921-U972
-
-
Wang, Y.L.1
Juranek, S.2
Li, H.T.3
Sheng, G.4
Tuschl, T.5
Patel, D.J.6
-
90
-
-
56249145105
-
Structure of the guide-strandcontaining argonaute silencing complex
-
Wang YL, Sheng G, Juranek S, Tuschl T, Patel DJ (2008b) Structure of the guide-strandcontaining argonaute silencing complex. Nature 456:U209-U234
-
(2008)
Nature
, vol.456
, pp. U209-U234
-
-
Wang, Y.L.1
Sheng, G.2
Juranek, S.3
Tuschl, T.4
Patel, D.J.5
-
91
-
-
84862777814
-
A role for small RNAs in DNA double-strand break repair
-
Wei W, Ba Z, Gao M, Wu Y, Ma Y, Amiard S, White CI, Rendtlew Danielsen JM, Yang YG, Qi Y (2012) A role for small RNAs in DNA double-strand break repair. Cell 149:101-112
-
(2012)
Cell
, vol.149
, pp. 101-112
-
-
Wei, W.1
Ba, Z.2
Gao, M.3
Wu, Y.4
Ma, Y.5
Amiard, S.6
White, C.I.7
Rendtlew Danielsen, J.M.8
Yang, Y.G.9
Qi, Y.10
-
92
-
-
84885576702
-
Fungal small RNAs suppress plant immunity by Hijacking host RNA interference pathways
-
Weiberg A, Wang M, Lin FM, Zhao HW, Zhang ZH, Kaloshian I, Huang HD, Jin HL (2013) Fungal small RNAs suppress plant immunity by Hijacking host RNA interference pathways. Science 342:118-123
-
(2013)
Science
, vol.342
, pp. 118-123
-
-
Weiberg, A.1
Wang, M.2
Lin, F.M.3
Zhao, H.W.4
Zh, Z.5
Kaloshian, I.6
Huang, H.D.7
Jin, H.L.8
-
93
-
-
55449131096
-
Noncoding transcription by RNA polymerase Pol IVb/Pol v mediates transcriptional silencing of overlapping and adjacent genes
-
Wierzbicki AT, Haag JR, Pikaard CS (2008) Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 135:635-648
-
(2008)
Cell
, vol.135
, pp. 635-648
-
-
Wierzbicki, A.T.1
Haag, J.R.2
Pikaard, C.S.3
-
94
-
-
84860708177
-
Reconstitution of an argonaute-dependent small RNA biogenesis pathway Reveals a handover mechanism involving the RNA exosome and the exonuclease QIP
-
Xue Z, Yuan H, Guo J, Liu Y (2012) Reconstitution of an argonaute-dependent small RNA biogenesis pathway Reveals a handover mechanism involving the RNA exosome and the exonuclease QIP. Mol cell 46:299-310
-
(2012)
Mol Cell
, vol.46
, pp. 299-310
-
-
Xue, Z.1
Yuan, H.2
Guo, J.3
Liu, Y.4
-
95
-
-
84873508731
-
Transcription of the major Neurospora crassa microRNA-like small RNAs relies on RNA polymerase III
-
Yang Q, Li L, Xue Z, Ye Q, Zhang L, Li S, Liu Y (2013) Transcription of the major Neurospora crassa microRNA-like small RNAs relies on RNA polymerase III. PLoS Genet 9:e1003227
-
(2013)
PLoS Genet
, vol.9
, pp. e1003227
-
-
Yang, Q.1
Li, L.2
Xue, Z.3
Ye, Q.4
Zhang, L.5
Li, S.6
Liu, Y.7
-
96
-
-
0034737298
-
RNAi: Double-stranded RNA directs the ATPdependent cleavage of mRNA at 21 to 23 nucleotide intervals
-
Zamore PD, Tuschl T, Sharp PA, Bartel DP (2000) RNAi: double-stranded RNA directs the ATPdependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell 101:25-33
-
(2000)
Cell
, vol.101
, pp. 25-33
-
-
Zamore, P.D.1
Tuschl, T.2
Sharp, P.A.3
Bartel, D.P.4
-
97
-
-
84873048282
-
Homologous recombination as a mechanism to recognize repetitive DNA sequences in an RNAi pathway
-
Zhang Z, Chang SS, Zhang Z, Xue Z, Zhang H, Li S, Liu Y (2013) Homologous recombination as a mechanism to recognize repetitive DNA sequences in an RNAi pathway. Genes Dev 27:145-150
-
(2013)
Genes Dev
, vol.27
, pp. 145-150
-
-
Zhang, Z.1
Chang, S.S.2
Zhang, Z.3
Xue, Z.4
Zhang, H.5
Li, S.6
Liu, Y.7
-
98
-
-
34249093687
-
A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
-
Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y (2007) A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes Dev 21:1190-1203
-
(2007)
Genes Dev
, vol.21
, pp. 1190-1203
-
-
Zhao, T.1
Li, G.2
Mi, S.3
Li, S.4
Hannon, G.J.5
Wang, X.J.6
Qi, Y.7
|