메뉴 건너뛰기




Volumn 33, Issue 5, 2005, Pages 1564-1573

The post-transcriptional gene silencing machinery functions independently of DNA methylation to repress a LINE1-like retrotransposon in Neurospora crassa

Author keywords

[No Author keywords available]

Indexed keywords

DNA METHYLTRANSFERASE; FUNGAL DNA; FUNGAL PROTEIN; FUNGAL RNA; RECQ HELICASE; RNA DIRECTED RNA POLYMERASE; SMALL INTERFERING RNA; RIBONUCLEASE III;

EID: 15044340327     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki300     Document Type: Article
Times cited : (76)

References (54)
  • 1
    • 0037422606 scopus 로고    scopus 로고
    • RNA interference machinery regulates chromosome dynamics during mitosis and meiosis in fission yeast
    • Hall,I.M., Noma,K. and Grewal,S.I. (2003) RNA interference machinery regulates chromosome dynamics during mitosis and meiosis in fission yeast. [i#Proc. Natl Acad. Sci. USA#1i], [b#100#1b], 193-198.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 193-198
    • Hall, I.M.1    Noma, K.2    Grewal, S.I.3
  • 2
    • 0037072661 scopus 로고    scopus 로고
    • Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
    • Volpe,T.A., Kidner,C., Hall,I.M., Teng,G., Grewal,S.I. and Martienssen,R.A. (2002) Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. [i#Science#1i], [b#297#1b], 1833-1837.
    • (2002) Science , vol.297 , pp. 1833-1837
    • Volpe, T.A.1    Kidner, C.2    Hall, I.M.3    Teng, G.4    Grewal, S.I.5    Martienssen, R.A.6
  • 3
    • 2442667886 scopus 로고    scopus 로고
    • Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
    • Han,J.S., Szak,S.T. and Boeke,J.D. (2004) Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. [i#Nature#1i], [b#429#1b], 268-274.
    • (2004) Nature , vol.429 , pp. 268-274
    • Han, J.S.1    Szak, S.T.2    Boeke, J.D.3
  • 4
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • Bernstein,E., Caudy,A.A., Hammond,S.M. and Hannon,G.J. (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. [i#Nature#1i], [b#409#1b], 363-366.
    • (2001) Nature , vol.409 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 5
    • 0035839109 scopus 로고    scopus 로고
    • Argonaute2, a link between genetic and biochemical analyses of RNAi
    • Hammond,S.M., Boettcher,S., Caudy,A.A., Kobayashi,R. and Hannon,G.J. (2001) Argonaute2, a link between genetic and biochemical analyses of RNAi. [i#Science#1i], [b#293#1b], 1146-1150.
    • (2001) Science , vol.293 , pp. 1146-1150
    • Hammond, S.M.1    Boettcher, S.2    Caudy, A.A.3    Kobayashi, R.4    Hannon, G.J.5
  • 6
    • 0035859046 scopus 로고    scopus 로고
    • Gene silencing as an adaptive defence against viruses
    • Waterhouse,P.M., Wang,M.B. and Lough,T. (2001) Gene silencing as an adaptive defence against viruses. [i#Nature#1i], [b#411#1b], 834-842.
    • (2001) Nature , vol.411 , pp. 834-842
    • Waterhouse, P.M.1    Wang, M.B.2    Lough, T.3
  • 7
    • 0034634360 scopus 로고    scopus 로고
    • Transgene and transposon silencing in Chlamydomonas reinhardtii by a DEAH-box RNA helicase
    • Wu-Scharf,D., Jeong,B., Zhang,C. and Cerutti,H. (2000) Transgene and transposon silencing in [i#Chlamydomonas reinhardtii#1i] by a DEAH-box RNA helicase. [i#Science#1i], [b#290#1b], 1159-1162.
    • (2000) Science , vol.290 , pp. 1159-1162
    • Wu-Scharf, D.1    Jeong, B.2    Zhang, C.3    Cerutti, H.4
  • 8
    • 0032739015 scopus 로고    scopus 로고
    • Mut-7 of C. elegans, required for transposon silencing and RNA interference, is a homolog of Werner syndrome helicase and RNaseD
    • Ketting,R.F., Haverkamp,T.H., van Luenen,H.G. and Plasterk,R.H. (1999) Mut-7 of [i#C. elegans#1i], required for transposon silencing and RNA interference, is a homolog of Werner syndrome helicase and RNaseD. [i#Cell#1i], [b#99#1b], 133-141.
    • (1999) Cell , vol.99 , pp. 133-141
    • Ketting, R.F.1    Haverkamp, T.H.2    van Luenen, H.G.3    Plasterk, R.H.4
  • 10
    • 0035984059 scopus 로고    scopus 로고
    • Endogenous and silencing-associated small RNAs in plants
    • Llave,C., Kasschau,K.D., Rector,M.A. and Carrington,J.C. (2002) Endogenous and silencing-associated small RNAs in plants. [i#Plant Cell#1i] [b#14#1b], 1605-1619.
    • (2002) Plant Cell , vol.14 , pp. 1605-1619
    • Llave, C.1    Kasschau, K.D.2    Rector, M.A.3    Carrington, J.C.4
  • 13
    • 0030840954 scopus 로고    scopus 로고
    • Cytosine methylation and the ecology of intragenomic parasites
    • Yoder,J.A., Walsh,C.P. and Bestor,T.H. (1997) Cytosine methylation and the ecology of intragenomic parasites. [i#Trends Genet.#1i], [b#13#1b], 335-340.
    • (1997) Trends Genet. , vol.13 , pp. 335-340
    • Yoder, J.A.1    Walsh, C.P.2    Bestor, T.H.3
  • 14
    • 0035839055 scopus 로고    scopus 로고
    • DNA methylation and epigenetic inheritance in plants and filamentous fungi
    • Martienssen,R.A. and Colot,V. (2001) DNA methylation and epigenetic inheritance in plants and filamentous fungi. [i#Science#1i], [b#293#1b], 1070-1074.
    • (2001) Science , vol.293 , pp. 1070-1074
    • Martienssen, R.A.1    Colot, V.2
  • 15
    • 0031662164 scopus 로고    scopus 로고
    • Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
    • Walsh,C.P., Chaillet,J.R. and Bestor,T.H. (1998) Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. [i#Nature Genet.#1i], [b#20#1b], 116-117.
    • (1998) Nature Genet. , vol.20 , pp. 116-117
    • Walsh, C.P.1    Chaillet, J.R.2    Bestor, T.H.3
  • 16
    • 4243085624 scopus 로고    scopus 로고
    • Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification
    • Lippman,Z., May,B., Yordan,C., Singer,T. and Martienssen,R. (2003) Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. [i#PLoS Biol.#1i], [b#1#1b] E67.
    • (2003) PLoS Biol. , vol.1
    • Lippman, Z.1    May, B.2    Yordan, C.3    Singer, T.4    Martienssen, R.5
  • 17
    • 0035837378 scopus 로고    scopus 로고
    • Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis
    • Miura,A., Yonebayashi,S., Watanabe,K., Toyama,T., Shimada,H. and Kakutani,T. (2001) Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis. [i#Nature#1i], [b#411#1b], 212-214.
    • (2001) Nature , vol.411 , pp. 212-214
    • Miura, A.1    Yonebayashi, S.2    Watanabe, K.3    Toyama, T.4    Shimada, H.5    Kakutani, T.6
  • 18
    • 0034103860 scopus 로고    scopus 로고
    • Silencing of retrotransposons in arabidopsis and reactivation by the ddm1 mutation
    • Hirochika,H., Okamoto,H. and Kakutani,T. (2000) Silencing of retrotransposons in arabidopsis and reactivation by the ddm1 mutation. [i#Plant Cell#1i], [b#12#1b], 357-369.
    • (2000) Plant Cell , vol.12 , pp. 357-369
    • Hirochika, H.1    Okamoto, H.2    Kakutani, T.3
  • 19
    • 0037474126 scopus 로고    scopus 로고
    • ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
    • Zilberman,D., Cao,X. and Jacobsen,S.E. (2003) ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. [i#Science#1i], [b#299#1b], 716-719.
    • (2003) Science , vol.299 , pp. 716-719
    • Zilberman, D.1    Cao, X.2    Jacobsen, S.E.3
  • 21
    • 0042831010 scopus 로고    scopus 로고
    • Hairpin RNAs and retrotransposon LTRs effect RNAi and chromatin-based gene silencing
    • Schramke,V. and Allshire,R. (2003) Hairpin RNAs and retrotransposon LTRs effect RNAi and chromatin-based gene silencing. [i#Science#1i], [b#301#1b] 1069-1074.
    • (2003) Science , vol.301 , pp. 1069-1074
    • Schramke, V.1    Allshire, R.2
  • 22
    • 0038715736 scopus 로고    scopus 로고
    • RNA-mediated gene silencing
    • Pickford,A.S. and Cogoni,C. (2003) RNA-mediated gene silencing. [i#Cell Mol. Life Sci.#1i], [b#60#1b], 871-882.
    • (2003) Cell Mol. Life Sci. , vol.60 , pp. 871-882
    • Pickford, A.S.1    Cogoni, C.2
  • 23
    • 0023230068 scopus 로고
    • A portable signal causing faithful DNA methylation de novo in Neurospora crassa
    • Selker,E.U., Jensen,B.C. and Richardson,G.A. (1987) A portable signal causing faithful DNA methylation de novo in [i#Neurospora crassa. Science#1i], [b#238#1b], 48-53.
    • (1987) Science , vol.238 , pp. 48-53
    • Selker, E.U.1    Jensen, B.C.2    Richardson, G.A.3
  • 24
    • 0035966290 scopus 로고    scopus 로고
    • Meiotic silencing by unpaired DNA
    • Shiu,P.K., Raju,N.B., Zickler,D. and Metzenberg,R.L. (2001) Meiotic silencing by unpaired DNA. [i#Cell#1i], [b#107#1b], 905-916.
    • (2001) Cell , vol.107 , pp. 905-916
    • Shiu, P.K.1    Raju, N.B.2    Zickler, D.3    Metzenberg, R.L.4
  • 26
    • 0024364736 scopus 로고
    • Restricted distribution of the Tad transposon in strains of Neurospora
    • Kinsey,J.A. (1989) Restricted distribution of the Tad transposon in strains of Neurospora. [i#Curr. Genet.#1i], [b#15#1b], 271-275.
    • (1989) Curr. Genet. , vol.15 , pp. 271-275
    • Kinsey, J.A.1
  • 27
    • 0025094221 scopus 로고
    • Tad, a LINE-like transposable element of Neurospora, can transpose between nuclei in heterokaryons
    • Kinsey,J.A. (1990) Tad, a LINE-like transposable element of Neurospora, can transpose between nuclei in heterokaryons. [i#Genetics#1i], [b#126#1b] 317-323.
    • (1990) Genetics , vol.126 , pp. 317-323
    • Kinsey, J.A.1
  • 28
    • 0028172690 scopus 로고
    • The Neurospora transposon Tad is sensitive to repeat-induced point mutation (RIP)
    • Kinsey,J.A., Garrett-Engele,P.W., Cambareri,E.B. and Selker,E.U. (1994) The Neurospora transposon Tad is sensitive to repeat-induced point mutation (RIP). [i#Genetics#1i], [b#138#1b], 657-664.
    • (1994) Genetics , vol.138 , pp. 657-664
    • Kinsey, J.A.1    Garrett-Engele, P.W.2    Cambareri, E.B.3    Selker, E.U.4
  • 29
    • 0035569770 scopus 로고    scopus 로고
    • Elimination of active tad elements during the sexual phase of the Neurospora crassa life cycle
    • Anderson,C., Tang,Q. and Kinsey,J.A. (2001) Elimination of active tad elements during the sexual phase of the [i#Neurospora crassa#1i] life cycle. [i#Fungal Genet. Biol.#1i], [b#33#1b], 49-57.
    • (2001) Fungal Genet. Biol. , vol.33 , pp. 49-57
    • Anderson, C.1    Tang, Q.2    Kinsey, J.A.3
  • 30
    • 0034882046 scopus 로고    scopus 로고
    • DNA methylation inhibits expression and transposition of the Neurospora Tad retrotransposon
    • Zhou,Y., Cambareri,E.B. and Kinsey,J.A. (2001) DNA methylation inhibits expression and transposition of the Neurospora Tad retrotransposon. [i#Mol. Genet. Genomics#1i], [b#265#1b], 748-754.
    • (2001) Mol. Genet. Genomics , vol.265 , pp. 748-754
    • Zhou, Y.1    Cambareri, E.B.2    Kinsey, J.A.3
  • 32
    • 0033551328 scopus 로고    scopus 로고
    • Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase
    • Cogoni,C. and Macino,G. (1999) Gene silencing in [i#Neurospora crassa#1i] requires a protein homologous to RNA-dependent RNA polymerase. [i#Nature#1i] [b#399#1b], 166-169.
    • (1999) Nature , vol.399 , pp. 166-169
    • Cogoni, C.1    Macino, G.2
  • 33
    • 0033579344 scopus 로고    scopus 로고
    • Posttranscriptional gene silencing in Neurospora by a RecQ DNA helicase
    • Cogoni,C. and Macino,G. (1999) Posttranscriptional gene silencing in Neurospora by a RecQ DNA helicase. [i#Science#1i], [b#286#1b], 2342-2344.
    • (1999) Science , vol.286 , pp. 2342-2344
    • Cogoni, C.1    Macino, G.2
  • 34
    • 0027752292 scopus 로고
    • Abnormal chromosome behavior in Neurospora mutants defective in DNA methylation
    • Foss,H.M., Roberts,C.J., Claeys,K.M. and Selker,E.U. (1993) Abnormal chromosome behavior in Neurospora mutants defective in DNA methylation. [i#Science#1i], [b#262#1b], 1737-1741.
    • (1993) Science , vol.262 , pp. 1737-1741
    • Foss, H.M.1    Roberts, C.J.2    Claeys, K.M.3    Selker, E.U.4
  • 35
    • 1542344324 scopus 로고    scopus 로고
    • Redundancy of the two dicer genes in transgene-induced posttranscriptional gene silencing in Neurospora crassa
    • Catalanotto,C., Pallotta,M., ReFalo,P., Sachs,M.S., Vayssie,L., Macino,G. and Cogoni,C. (2004) Redundancy of the two dicer genes in transgene-induced posttranscriptional gene silencing in [i#Neurospora crassa. Mol. Cell Biol.#1i], [b#24#1b], 2536-2545.
    • (2004) Mol. Cell Biol. , vol.24 , pp. 2536-2545
    • Catalanotto, C.1    Pallotta, M.2    ReFalo, P.3    Sachs, M.S.4    Vayssie, L.5    Macino, G.6    Cogoni, C.7
  • 36
    • 77956995235 scopus 로고
    • Genetic and microbiological research techniques for Neurospora crassa
    • Davis,R.H. and De Serres,F.J. (1970) Genetic and microbiological research techniques for [i#Neurospora crassa. Methods Enzymol.#1i], [b#17#1b] 79-143.
    • (1970) Methods Enzymol. , vol.17 , pp. 79-143
    • Davis, R.H.1    De Serres, F.J.2
  • 37
    • 0001355008 scopus 로고
    • 'Neurospora V: A synthetic medium favoring sexual reproduction'
    • Westergaard,M.M. and Mitchell,H.K. (1947) 'Neurospora V: A synthetic medium favoring sexual reproduction'. [i#Am. J. Bot.#1i], 573-577.
    • (1947) Am. J. Bot. , pp. 573-577
    • Westergaard, M.M.1    Mitchell, H.K.2
  • 38
    • 0022751236 scopus 로고
    • Cloning and characterization of the gene for beta-tubulin from a benomyl-resistant mutant of Neurospora crassa and its use as a dominant selectable marker
    • Orbach,M.J., Porro,E.B. and Yanofsky,C. (1986) Cloning and characterization of the gene for beta-tubulin from a benomyl-resistant mutant of [i#Neurospora crassa#1i] and its use as a dominant selectable marker. [i#Mol. Cell. Biol.#1i], [b#6#1b], 2452-2461.
    • (1986) Mol. Cell. Biol. , vol.6 , pp. 2452-2461
    • Orbach, M.J.1    Porro, E.B.2    Yanofsky, C.3
  • 39
    • 0002517129 scopus 로고
    • Use of a bacterial hygromycin B resistance gene as a dominant selectable marker in Neurospora crassa transformation
    • Staben,C., Jensen,B., Singer,M., Pollock,J., Schechtman,M., Kinsey,J. and Selker,E. (1989) Use of a bacterial hygromycin B resistance gene as a dominant selectable marker in [i#Neurospora crassa#1i] transformation. [i#Fungal Genet. Newslett.#1i], [b#36#1b], 79.
    • (1989) Fungal Genet. Newslett. , vol.36 , pp. 79
    • Staben, C.1    Jensen, B.2    Singer, M.3    Pollock, J.4    Schechtman, M.5    Kinsey, J.6    Selker, E.7
  • 40
    • 0028219193 scopus 로고
    • Tad1-1, an active LINE-like element of Neurospora crassa
    • Cambareri,E.B., Helber,J. and Kinsey,J.A. (1994) Tad1-1, an active LINE-like element of [i#Neurospora crassa. Mol. Gen. Genet.#1i], [b#242#1b] 658-665.
    • (1994) Mol. Gen. Genet. , vol.242 , pp. 658-665
    • Cambareri, E.B.1    Helber, J.2    Kinsey, J.A.3
  • 41
    • 0036205131 scopus 로고    scopus 로고
    • Involvement of small RNAs and role of the qde genes in the gene silencing pathway in Neurospora
    • Catalanotto,C., Azzalin,G., Macino,G. and Cogoni,C. (2002) Involvement of small RNAs and role of the qde genes in the gene silencing pathway in Neurospora. [i#Genes Dev.#1i], [b#16#1b], 790-795.
    • (2002) Genes Dev. , vol.16 , pp. 790-795
    • Catalanotto, C.1    Azzalin, G.2    Macino, G.3    Cogoni, C.4
  • 44
    • 1842816517 scopus 로고    scopus 로고
    • Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways
    • Lee,Y.S., Nakahara,K., Pham,J.W., Kim,K., He,Z., Sontheimer,E.J. and Carthew,R.W. (2004) Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways. [i#Cell#1i], [b#117#1b], 69-81.
    • (2004) Cell , vol.117 , pp. 69-81
    • Lee, Y.S.1    Nakahara, K.2    Pham, J.W.3    Kim, K.4    He, Z.5    Sontheimer, E.J.6    Carthew, R.W.7
  • 45
    • 0035422440 scopus 로고    scopus 로고
    • dire-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora
    • Kouzminova,E. and Selker,E.U. (2001) dire-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora. [i#EMBO J.#1i], [b#20#1b], 4309-4323.
    • (2001) EMBO J. , vol.20 , pp. 4309-4323
    • Kouzminova, E.1    Selker, E.U.2
  • 47
    • 4043067987 scopus 로고    scopus 로고
    • RNAi-dependent and RNAi-independent mechanisms contribute to the silencing of RIPed sequences in Neurospora crassa
    • Chicas,A., Cogoni,C. and Macino,G. (2004) RNAi-dependent and RNAi-independent mechanisms contribute to the silencing of RIPed sequences in [i#Neurospora crassa. Nucleic Acids Res.#1i], [b#32#1b], 4237-4243.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 4237-4243
    • Chicas, A.1    Cogoni, C.2    Macino, G.3
  • 48
    • 3042569778 scopus 로고    scopus 로고
    • DNA methylation is independent of RNA interference in Neurospora
    • Freitag,M., Lee,D.W., Kothe,G.O., Pratt,R.J., Aramayo,R. and Selker,E.U. (2004) DNA methylation is independent of RNA interference in Neurospora. [i#Science#1i], [b#304#1b], 1939.
    • (2004) Science , vol.304 , pp. 1939
    • Freitag, M.1    Lee, D.W.2    Kothe, G.O.3    Pratt, R.J.4    Aramayo, R.5    Selker, E.U.6
  • 49
    • 0037279866 scopus 로고    scopus 로고
    • The QDE-3 homologue RecQ-2 co-operates with QDE-3 in DNA repair in Neurospora crassa
    • Pickford,A., Braccini,L., Macino,G. and Cogoni,C. (2003) The QDE-3 homologue RecQ-2 co-operates with QDE-3 in DNA repair in [i#Neurospora crassa. Curr. Genet.#1i], [b#42#1b], 220-227.
    • (2003) Curr. Genet. , vol.42 , pp. 220-227
    • Pickford, A.1    Braccini, L.2    Macino, G.3    Cogoni, C.4
  • 50
    • 0345306117 scopus 로고    scopus 로고
    • Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi
    • Sijen,T. and Plasterk,R.H. (2003) Transposon silencing in the [i#Caenorhabditis elegans#1i] germ line by natural RNAi. [i#Nature#1i], [b#426#1b], 310-314.
    • (2003) Nature , vol.426 , pp. 310-314
    • Sijen, T.1    Plasterk, R.H.2
  • 51
    • 0029855376 scopus 로고    scopus 로고
    • Tad, a Neurospora LINE-like retrotransposon exhibits a complex pattern of transcription
    • Sewell,E. and Kinsey,J.A. (1996) Tad, a Neurospora LINE-like retrotransposon exhibits a complex pattern of transcription. [i#Mol. Gen. Genet.#1i], [b#252#1b], 137-145.
    • (1996) Mol. Gen. Genet. , vol.252 , pp. 137-145
    • Sewell, E.1    Kinsey, J.A.2
  • 52
    • 4644246532 scopus 로고    scopus 로고
    • Efficient silencing by expressing double stranded RNA in Neurospora crassa
    • Goldoni,M., Azzalin,G., Macino,G. and Cogoni,C. (2004) Efficient silencing by expressing double stranded RNA in [i#Neurospora crassa. Fungal Genet. Biol.#1i], [b#41#1b], 1016-1024.
    • (2004) Fungal Genet. Biol. , vol.41 , pp. 1016-1024
    • Goldoni, M.1    Azzalin, G.2    Macino, G.3    Cogoni, C.4
  • 54
    • 0029084897 scopus 로고
    • DNA methylation associated with repeat-induced point mutation in Neurospora crassa
    • Singer,M.J., Marcotte,B.A. and Selker,E.U. (1995) DNA methylation associated with repeat-induced point mutation in [i#Neurospora crassa. Mol. Cell. Biol.#1i], [b#15#1b], 5586-5597.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 5586-5597
    • Singer, M.J.1    Marcotte, B.A.2    Selker, E.U.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.