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Volumn 194, Issue 1, 2013, Pages 91-100

Novel proteins required for meiotic silencing by unpaired DNA and siRNA generation in Neurospora crassa

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA; FUNGAL PROTEIN; MEIOTIC SILENCING BY UNPAIRED DNA; MESSENGER RNA; SAD 4 PROTEIN; SAD 5 PROTEIN; SMALL INTERFERING RNA; UNCLASSIFIED DRUG;

EID: 84877097328     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.112.148999     Document Type: Article
Times cited : (30)

References (44)
  • 1
    • 41649115999 scopus 로고    scopus 로고
    • DCL-1 colocalizes with other components of the MSUD machinery and is required for silencing
    • Alexander, W. G., N. B. Raju, H. Xiao, T. M. Hammond, T. D. Perdue et al., 2008 DCL-1 colocalizes with other components of the MSUD machinery and is required for silencing. Fungal Genet. Biol. 45: 719-727.
    • (2008) Fungal Genet. Biol , vol.45 , pp. 719-727
    • Alexander, W.G.1    Raju, N.B.2    Xiao, H.3    Hammond, T.M.4    Perdue, T.D.5
  • 2
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang et al., 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schäffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 3
    • 0030581176 scopus 로고    scopus 로고
    • Meiotic transvection in fungi
    • Aramayo, R., and R. L. Metzenberg, 1996 Meiotic transvection in fungi. Cell 86: 103-113.
    • (1996) Cell , vol.86 , pp. 103-113
    • Aramayo, R.1    Metzenberg, R.L.2
  • 4
    • 0036205131 scopus 로고    scopus 로고
    • Involvement of small RNAs and role of the qde genes in the gene silencing pathway in Neurospora
    • Catalanotto, C., G. Azzalin, G. Macino, and C. Cogoni, 2002 Involvement of small RNAs and role of the qde genes in the gene silencing pathway in Neurospora. Genes Dev. 16: 790-795.
    • (2002) Genes Dev , vol.16 , pp. 790-795
    • Catalanotto, C.1    Azzalin, G.2    Macino, G.3    Cogoni, C.4
  • 5
    • 1542344324 scopus 로고    scopus 로고
    • Redundancy of the two dicer genes in transgeneinduced posttranscriptional gene silencing in Neurospora crassa
    • Catalanotto, C., and M. Pallotta, P. ReFalo, M. S. Sachs, L. Vayssie et al., 2004 Redundancy of the two dicer genes in transgeneinduced posttranscriptional gene silencing in Neurospora crassa. Mol. Cell. Biol. 24: 2536-2545.
    • (2004) Mol. Cell. Biol , vol.24 , pp. 2536-2545
    • Catalanotto, C.1    Pallotta, M.2    Refalo, P.3    Sachs, M.S.4    Vayssie, L.5
  • 7
    • 61849110268 scopus 로고    scopus 로고
    • Quelling targets the rDNA locus and functions in rDNA copy number control
    • Cecere, G., and C. Cogoni, 2009 Quelling targets the rDNA locus and functions in rDNA copy number control. BMC Microbiol. 9: 44.
    • (2009) BMC Microbiol , vol.9 , pp. 44
    • Cecere, G.1    Cogoni, C.2
  • 8
    • 84870487730 scopus 로고    scopus 로고
    • RNA interference pathways in fungi: Mechanisms and functions
    • Chang, S. S., Z. Zhang, and Y. Liu, 2012 RNA interference pathways in fungi: mechanisms and functions. Annu. Rev. Microbiol. 66: 305-323.
    • (2012) Annu. Rev. Microbiol , vol.66 , pp. 305-323
    • Chang, S.S.1    Zhang, Z.2    Liu, Y.3
  • 9
    • 33745924142 scopus 로고    scopus 로고
    • A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors
    • Colot, H. V., G. Park, G. E. Turner, C. Ringelberg, C. M. Crew et al., 2006 A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors. Proc. Natl. Acad. Sci. USA 103: 10352-10357.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 10352-10357
    • Colot, H.V.1    Park, G.2    Turner, G.E.3    Ringelberg, C.4    Crew, C.M.5
  • 10
    • 79952609214 scopus 로고    scopus 로고
    • Population genomics and local adaptation in wild isolates of a model microbial eukaryote
    • Ellison, C. E., C. Hall, D. Kowbel, J. Welch, R. B. Brem et al., 2011 Population genomics and local adaptation in wild isolates of a model microbial eukaryote. Proc. Natl. Acad. Sci. USA 108: 2831-2836.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 2831-2836
    • Ellison, C.E.1    Hall, C.2    Kowbel, D.3    Welch, J.4    Brem, R.B.5
  • 11
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J., 1985 Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 12
    • 33144486823 scopus 로고    scopus 로고
    • Expression and visualization of red fluorescent protein (RFP) in Neurospora crassa
    • Freitag, M., and E. U. Selker, 2005 Expression and visualization of red fluorescent protein (RFP) in Neurospora crassa. Fungal Genet. Newsl. 52: 14-17.
    • (2005) Fungal Genet. Newsl , vol.52 , pp. 14-17
    • Freitag, M.1    Selker, E.U.2
  • 13
    • 0037464589 scopus 로고    scopus 로고
    • The genome sequence of the filamentous fungus Neurospora crassa
    • Galagan, J. E., S. E. Calvo, K. A. Borkovich, E. U. Selker, N. D. Read et al., 2003 The genome sequence of the filamentous fungus Neurospora crassa. Nature 422: 859-868.
    • (2003) Nature , vol.422 , pp. 859-868
    • Galagan, J.E.1    Calvo, S.E.2    Borkovich, K.A.3    Selker, E.U.4    Read, N.D.5
  • 14
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT
    • Hall, T. A., 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acid Symp. Ser. 41: 95-98.
    • (1999) Nucleic Acid Symp. Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 16
    • 84864361477 scopus 로고    scopus 로고
    • SAD-3, a putative helicase required for meiotic silencing by unpaired DNA, interacts with other components of the silencing machinery. G3: Genes, Genomes
    • Hammond, T. M., H. Xiao, E. C. Boone, T. D. Perdue, P. J. Pukkila et al., 2011a SAD-3, a putative helicase required for meiotic silencing by unpaired DNA, interacts with other components of the silencing machinery. G3: Genes, Genomes, Genetics 1: 369-376.
    • (2011) Genetics , vol.1 , pp. 369-376
    • Hammond, T.M.1    Xiao, H.2    Boone, E.C.3    Perdue, T.D.4    Pukkila, P.J.5
  • 17
    • 79960580412 scopus 로고    scopus 로고
    • Fluorescent and bimolecular-fluorescent protein tagging of genes at their native loci in Neurospora crassa using specialized double-joint PCR plasmids
    • Hammond, T. M., H. Xiao, D. G. Rehard, E. C. Boone, T. D. Perdue et al., 2011b Fluorescent and bimolecular-fluorescent protein tagging of genes at their native loci in Neurospora crassa using specialized double-joint PCR plasmids. Fungal Genet. Biol. 48: 279-284.
    • (2011) Fungal Genet. Biol , vol.48 , pp. 279-284
    • Hammond, T.M.1    Xiao, H.2    Rehard, D.G.3    Boone, E.C.4    Perdue, T.D.5
  • 18
    • 84877087098 scopus 로고    scopus 로고
    • Identification of small RNAs associated with meiotic silencing by unpaired DNA
    • Hammond, T. M., W. G. Spollen, L. M. Decker, S. M. Blake, G. K. Springer et al., 2013 Identification of small RNAs associated with meiotic silencing by unpaired DNA. Genetics 194: 279-284.
    • (2013) Genetics , vol.194 , pp. 279-284
    • Hammond, T.M.1    Spollen, W.G.2    Decker, L.M.3    Blake, S.M.4    Springer, G.K.5
  • 19
    • 0024850774 scopus 로고
    • Cloning and characterization of the yeast chaperonin HSP60 gene
    • Johnson, R. B., K. Fearon, T. Mason, and S. Jindal, 1989 Cloning and characterization of the yeast chaperonin HSP60 gene. Gene 84: 295-302.
    • (1989) Gene , vol.84 , pp. 295-302
    • Johnson, R.B.1    Fearon, K.2    Mason, T.3    Jindal, S.4
  • 20
    • 34547662247 scopus 로고    scopus 로고
    • Meiotic silencing and the epigenetics of sex
    • Kelly, W. G., and R. Aramayo, 2007 Meiotic silencing and the epigenetics of sex. Chromosome Res. 15: 633-651.
    • (2007) Chromosome Res , vol.15 , pp. 633-651
    • Kelly, W.G.1    Aramayo, R.2
  • 21
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., C. Trapnell, M. Pop, and S. L. Salzberg, 2009 Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 22
    • 0038463581 scopus 로고    scopus 로고
    • An argonaute-like protein is required for meiotic silencing
    • Lee, D. W., R. J. Pratt, M. McLaughlin, and R. Aramayo, 2003 An argonaute-like protein is required for meiotic silencing. Genetics 164: 821-828.
    • (2003) Genetics , vol.164 , pp. 821-828
    • Lee, D.W.1    Pratt, R.J.2    McLaughlin, M.3    Aramayo, R.4
  • 23
    • 78751676211 scopus 로고    scopus 로고
    • QIP, a component of the vegetative RNA silencing pathway, is essential for meiosis and suppresses meiotic silencing in Neurospora crassa
    • Lee, D. W., R. Millimaki, and R. Aramayo, 2010a QIP, a component of the vegetative RNA silencing pathway, is essential for meiosis and suppresses meiotic silencing in Neurospora crassa. Genetics 186: 127-133.
    • (2010) Genetics , vol.186 , pp. 127-133
    • Lee, D.W.1    Millimaki, R.2    Aramayo, R.3
  • 24
    • 66149084316 scopus 로고    scopus 로고
    • QiRNA is a new type of small interfering RNA induced by DNA damage
    • Lee, H. C., S. S. Chang, S. Choudhary, A. P. Aalto, M. Maiti et al., 2009 qiRNA is a new type of small interfering RNA induced by DNA damage. Nature 459: 274-277.
    • (2009) Nature , vol.459 , pp. 274-277
    • Lee, H.C.1    Chang, S.S.2    Choudhary, S.3    Aalto, A.P.4    Maiti, M.5
  • 25
    • 77950929337 scopus 로고    scopus 로고
    • Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi
    • Lee, H. C., L. Li, W. Gu, Z. Xue, S. K. Crosthwaite et al., 2010b Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi. Mol. Cell 38: 803-814.
    • (2010) Mol. Cell , vol.38 , pp. 803-814
    • Lee, H.C.1    Li, L.2    Gu, W.3    Xue, Z.4    Crosthwaite, S.K.5
  • 26
    • 33947153420 scopus 로고    scopus 로고
    • QIP, a putative exonuclease, interacts with the Neurospora Argonaute protein and facilitates conversion of duplex siRNA into single strands
    • Maiti, M., H. C. Lee, and Y. Liu, 2007 QIP, a putative exonuclease, interacts with the Neurospora Argonaute protein and facilitates conversion of duplex siRNA into single strands. Genes Dev. 21: 590-600.
    • (2007) Genes Dev , vol.21 , pp. 590-600
    • Maiti, M.1    Lee, H.C.2    Liu, Y.3
  • 28
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from highthroughput sequencing reads
    • Martin, M., 2011 Cutadapt removes adapter sequences from highthroughput sequencing reads. EMBnet.journal 17: 10-12.
    • (2011) EMBnet.journal , vol.17 , pp. 10-12
    • Martin, M.1
  • 29
    • 77951755936 scopus 로고    scopus 로고
    • The Fungal Genetics Stock Center: A repository for 50 years of fungal genetics research
    • McCluskey, K., A. Wiest, and M. Plamann, 2010 The Fungal Genetics Stock Center: a repository for 50 years of fungal genetics research. J. Biosci. 35: 119-126.
    • (2010) J. Biosci , vol.35 , pp. 119-126
    • McCluskey, K.1    Wiest, A.2    Plamann, M.3
  • 32
    • 15044340327 scopus 로고    scopus 로고
    • The post-transcriptional gene silencing machinery functions independently of DNA methylation to repress a LINE1-like retrotransposon in Neurospora crassa
    • Nolan, T., L. Braccini, G. Azzalin, A. De Toni, G. Macino et al., 2005 The post-transcriptional gene silencing machinery functions independently of DNA methylation to repress a LINE1-like retrotransposon in Neurospora crassa. Nucleic Acids Res. 33: 1564-1573.
    • (2005) Nucleic Acids Res , vol.33 , pp. 1564-1573
    • Nolan, T.1    Braccini, L.2    Azzalin, G.3    de Toni, A.4    Macino, G.5
  • 33
    • 58249090017 scopus 로고    scopus 로고
    • The evolution of RNAi as a defence against viruses and transposable elements
    • Obbard, D. J., K. H. Gordon, A. H. Buck, and F. M. Jiggins, 2009 The evolution of RNAi as a defence against viruses and transposable elements. Phil. Trans. R. Soc. B 364: 99-115.
    • (2009) Phil. Trans. R. Soc. B , vol.364 , pp. 99-115
    • Obbard, D.J.1    Gordon, K.H.2    Buck, A.H.3    Jiggins, F.M.4
  • 34
    • 34548583558 scopus 로고    scopus 로고
    • Neurospora spore killers Sk-2 and Sk-3 suppress meiotic silencing by unpaired DNA
    • Raju, N. B., R. L. Metzenberg, and P. K. T. Shiu, 2007 Neurospora spore killers Sk-2 and Sk-3 suppress meiotic silencing by unpaired DNA. Genetics 176: 43-52.
    • (2007) Genetics , vol.176 , pp. 43-52
    • Raju, N.B.1    Metzenberg, R.L.2    Shiu, P.K.T.3
  • 35
    • 0026441194 scopus 로고
    • Quelling: Transient inactivation of gene expression in Neurospora crassa by transformation with homologous sequences
    • Romano, N., and G. Macino, 1992 Quelling: transient inactivation of gene expression in Neurospora crassa by transformation with homologous sequences. Mol. Microbiol. 6: 3343-3353.
    • (1992) Mol. Microbiol , vol.6 , pp. 3343-3353
    • Romano, N.1    Macino, G.2
  • 36
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei, 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 37
    • 0036671856 scopus 로고    scopus 로고
    • Meiotic silencing by unpaired DNA: Properties, regulation, and suppression
    • Shiu, P. K. T., and R. L. Metzenberg, 2002 Meiotic silencing by unpaired DNA: properties, regulation, and suppression. Genetics 161: 1483-1495.
    • (2002) Genetics , vol.161 , pp. 1483-1495
    • Shiu, P.K.T.1    Metzenberg, R.L.2
  • 39
    • 33144465730 scopus 로고    scopus 로고
    • SAD-2 is required for meiotic silencing by unpaired DNA and perinuclear localization of SAD-1 RNAdirected RNA polymerase
    • Shiu, P. K. T., D. Zickler, N. B. Raju, G. Ruprich-Robert, and R. L. Metzenberg, 2006 SAD-2 is required for meiotic silencing by unpaired DNA and perinuclear localization of SAD-1 RNAdirected RNA polymerase. Proc. Natl. Acad. Sci. USA 103: 2243-2248.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 2243-2248
    • Shiu, P.K.T.1    Zickler, D.2    Raju, N.B.3    Ruprich-Robert, G.4    Metzenberg, R.L.5
  • 40
    • 81955164168 scopus 로고    scopus 로고
    • Meiotic silencing in the homothallic fungus Gibberella zeae
    • Son, H., K. Min, J. Lee, N. B. Raju, and Y. W. Lee, 2011 Meiotic silencing in the homothallic fungus Gibberella zeae. Fungal Biol 115: 1290-1302.
    • (2011) Fungal Biol , vol.115 , pp. 1290-1302
    • Son, H.1    Min, K.2    Lee, J.3    Raju, N.B.4    Lee, Y.W.5
  • 41
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei et al., 2011 MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739.
    • (2011) Mol. Biol. Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson, 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 43
    • 0001355008 scopus 로고
    • Neurospora V. A synthetic medium favoring sexual reproduction
    • Westergaard, M., and H. K. Mitchell, 1947 Neurospora V. A synthetic medium favoring sexual reproduction. Am. J. Bot. 34: 573-577.
    • (1947) Am. J. Bot , vol.34 , pp. 573-577
    • Westergaard, M.1    Mitchell, H.K.2
  • 44
    • 78751675650 scopus 로고    scopus 로고
    • QIP, a protein that converts duplex siRNA into single strands, is required for meiotic silencing by unpaired DNA
    • Xiao, H., W. G. Alexander, T. M. Hammond, E. C. Boone, T. D. Perdue et al., 2010 QIP, a protein that converts duplex siRNA into single strands, is required for meiotic silencing by unpaired DNA. Genetics 186: 119-126.
    • (2010) Genetics , vol.186 , pp. 119-126
    • Xiao, H.1    Alexander, W.G.2    Hammond, T.M.3    Boone, E.C.4    Perdue, T.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.