-
1
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
The Human Microbiome Project Consortium
-
The Human Microbiome Project Consortium: Structure, function and diversity of the healthy human microbiome. Nature 2012, 486:207-214.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
2
-
-
84924210283
-
-
Washington, D. C.: National Academy of Sciences
-
Pray L, Pillsbury L, Tomayko E: The Human Microbiome, Diet, and Health: Workshop Summary. Washington, D. C.: National Academy of Sciences; 2012.
-
(2012)
The Human Microbiome, Diet, and Health: Workshop Summary
-
-
Pray, L.1
Pillsbury, L.2
Tomayko, E.3
-
3
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M, Gill SR, Nelson KE, Relman DA: Diversity of the human intestinal microbial flora. Science 2005, 308:1635-1638.
-
(2005)
Science
, vol.308
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
Sargent, M.6
Gill, S.R.7
Nelson, K.E.8
Relman, D.A.9
-
4
-
-
15544369658
-
Host-bacterial mutualism in the human intestine
-
Backhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI: Host-bacterial mutualism in the human intestine. Science 2005, 307:1915-1920.
-
(2005)
Science
, vol.307
, pp. 1915-1920
-
-
Backhed, F.1
Ley, R.E.2
Sonnenburg, J.L.3
Peterson, D.A.4
Gordon, J.I.5
-
5
-
-
0037425743
-
Gut flora in health and disease
-
Guarner F, Malagelada JR: Gut flora in health and disease. Lancet 2003, 361:512-519.
-
(2003)
Lancet
, vol.361
, pp. 512-519
-
-
Guarner, F.1
Malagelada, J.R.2
-
6
-
-
22144490199
-
An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system
-
Mazmanian SK, Liu CH, Tzianabos AO, Kasper DL: An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system. Cell 2005, 122:107-118.
-
(2005)
Cell
, vol.122
, pp. 107-118
-
-
Mazmanian, S.K.1
Liu, C.H.2
Tzianabos, A.O.3
Kasper, D.L.4
-
7
-
-
8144226856
-
The gut microbiota as an environmental factor that regulates fat storage
-
Backhed F, Ding H, Wang T, Hooper LV, Koh GY, Nagy A, Semenkovich CF, Gordon JI: The gut microbiota as an environmental factor that regulates fat storage. Proc Natl Acad Sci U S A 2004, 101:15718-15723.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 15718-15723
-
-
Backhed, F.1
Ding, H.2
Wang, T.3
Hooper, L.V.4
Koh, G.Y.5
Nagy, A.6
Semenkovich, C.F.7
Gordon, J.I.8
-
8
-
-
74249119678
-
Obesity and the human microbiome
-
Ley RE: Obesity and the human microbiome. Curr Opin Gastroenterol 2010, 26:5-11.
-
(2010)
Curr Opin Gastroenterol
, vol.26
, pp. 5-11
-
-
Ley, R.E.1
-
9
-
-
54549122338
-
Innate immunity and intestinal microbiota in the development of Type 1 diabetes
-
Wen L, Ley RE, Volchkov PY, Stranges PB, Avanesyan L, Stonebraker AC, Hu C, Wong FS, Szot GL, Bluestone JA, Gordon JI, Chervonsky AV: Innate immunity and intestinal microbiota in the development of Type 1 diabetes. Nature 2008, 455:1109-1113.
-
(2008)
Nature
, vol.455
, pp. 1109-1113
-
-
Wen, L.1
Ley, R.E.2
Volchkov, P.Y.3
Stranges, P.B.4
Avanesyan, L.5
Stonebraker, A.C.6
Hu, C.7
Wong, F.S.8
Szot, G.L.9
Bluestone, J.A.10
Gordon, J.I.11
Chervonsky, A.V.12
-
10
-
-
77949393654
-
Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
-
Larsen N, Vogensen FK, van den Berg FW, Nielsen DS, Andreasen AS, Pedersen BK, Al-Soud WA, Sorensen SJ, Hansen LH, Jakobsen M: Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults. PLoS One 2010, 5:e9085.
-
(2010)
PLoS One
, vol.5
, pp. e9085
-
-
Larsen, N.1
Vogensen, F.K.2
Van Den Berg, F.W.3
Nielsen, D.S.4
Andreasen, A.S.5
Pedersen, B.K.6
Al-Soud, W.A.7
Sorensen, S.J.8
Hansen, L.H.9
Jakobsen, M.10
-
11
-
-
33846218256
-
Intestinal microbiota: A potential diet-responsive prevention target in ApcMin mice
-
Mai V, Colbert LH, Perkins SN, Schatzkin A, Hursting SD: Intestinal microbiota: A potential diet-responsive prevention target in ApcMin mice. Mol Carcinog 2007, 46:42-48.
-
(2007)
Mol Carcinog
, vol.46
, pp. 42-48
-
-
Mai, V.1
Colbert, L.H.2
Perkins, S.N.3
Schatzkin, A.4
Hursting, S.D.5
-
12
-
-
84930478579
-
The gut microbiota and its relationship to diet and obesity: New insights
-
Clarke SF, Murphy EF, Nilaweera K, Ross PR, Shanahan F, O'Toole PW, Cotter PD: The gut microbiota and its relationship to diet and obesity: new insights. Gut Microbes 2012, 3:186-202.
-
(2012)
Gut Microbes
, vol.3
, pp. 186-202
-
-
Clarke, S.F.1
Murphy, E.F.2
Nilaweera, K.3
Ross, P.R.4
Shanahan, F.5
O'Toole, P.W.6
Cotter, P.D.7
-
14
-
-
84878810790
-
Pathways in microbe-induced obesity
-
Cox LM, Blaser MJ: Pathways in microbe-induced obesity. Cell Metab 2013, 17:883-894.
-
(2013)
Cell Metab
, vol.17
, pp. 883-894
-
-
Cox, L.M.1
Blaser, M.J.2
-
15
-
-
41849127118
-
Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome
-
Turnbaugh PJ, Backhed F, Fulton L, Gordon JI: Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe 2008, 3:213-223.
-
(2008)
Cell Host Microbe
, vol.3
, pp. 213-223
-
-
Turnbaugh, P.J.1
Backhed, F.2
Fulton, L.3
Gordon, J.I.4
-
16
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI: An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006, 444:1027-1031.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
17
-
-
23344442120
-
Obesity alters gut microbial ecology
-
Ley RE, Backhed F, Turnbaugh P, Lozupone CA, Knight RD, Gordon JI: Obesity alters gut microbial ecology. Proc Natl Acad Sci U S A 2005, 102:11070-11075.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 11070-11075
-
-
Ley, R.E.1
Backhed, F.2
Turnbaugh, P.3
Lozupone, C.A.4
Knight, R.D.5
Gordon, J.I.6
-
18
-
-
78649887273
-
Composition and energy harvesting capacity of the gut microbiota: Relationship to diet, obesity and time in mouse models
-
Murphy EF, Cotter PD, Healy S, Marques TM, O'Sullivan O, Fouhy F, Clarke SF, O'Toole PW, Quigley EM, Stanton C, Ross PR, O'Doherty RM, Shanahan F: Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models. Gut 2010, 59:1635-1642.
-
(2010)
Gut
, vol.59
, pp. 1635-1642
-
-
Murphy, E.F.1
Cotter, P.D.2
Healy, S.3
Marques, T.M.4
O'Sullivan, O.5
Fouhy, F.6
Clarke, S.F.7
O'Toole, P.W.8
Quigley, E.M.9
Stanton, C.10
Ross, P.R.11
O'doherty, R.M.12
Shanahan, F.13
-
19
-
-
77950669604
-
The effect of diet on the human gut microbiome: A metagenomic analysis in humanized gnotobiotic mice
-
Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI: The effect of diet on the human gut microbiome: A metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med 2009, 1:6ra-14ra.
-
(2009)
Sci Transl Med
, vol.1
, pp. 6ra-14ra
-
-
Turnbaugh, P.J.1
Ridaura, V.K.2
Faith, J.J.3
Rey, F.E.4
Knight, R.5
Gordon, J.I.6
-
20
-
-
33845901507
-
Microbial ecology: Human gut microbes associated with obesity
-
Ley RE, Turnbaugh PJ, Klein S, Gordon JI: Microbial ecology: Human gut microbes associated with obesity. Nature 2006, 444:1022-1023.
-
(2006)
Nature
, vol.444
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
Gordon, J.I.4
-
21
-
-
53849104768
-
Distinct composition of gut microbiota during pregnancy in overweight and normal-weight women
-
Collado MC, Isolauri E, Laitinen K, Salminen S: Distinct composition of gut microbiota during pregnancy in overweight and normal-weight women. Am J Clin Nutr 2008, 88:894-899.
-
(2008)
Am J Clin Nutr
, vol.88
, pp. 894-899
-
-
Collado, M.C.1
Isolauri, E.2
Laitinen, K.3
Salminen, S.4
-
22
-
-
56549122798
-
Human colonic microbiota associated with diet, obesity and weight loss
-
Duncan SH, Lobley GE, Holtrop G, Ince J, Johnstone AM, Louis P, Flint HJ: Human colonic microbiota associated with diet, obesity and weight loss. Int J Obes (Lond) 2008, 32:1720-1724.
-
(2008)
Int J Obes (Lond)
, vol.32
, pp. 1720-1724
-
-
Duncan, S.H.1
Lobley, G.E.2
Holtrop, G.3
Ince, J.4
Johnstone, A.M.5
Louis, P.6
Flint, H.J.7
-
23
-
-
79960439984
-
Frequency of Firmicutes and Bacteroidetes in gut microbiota in obese and normal weight Egyptian children and adults
-
Ismail NA, Ragab SH, ElBaky AA, Shoeib ARS, Alhosary Y, Fekry D: Frequency of Firmicutes and Bacteroidetes in gut microbiota in obese and normal weight Egyptian children and adults. Archives of Med Sci 2011, 7:501-507.
-
(2011)
Archives of Med Sci
, vol.7
, pp. 501-507
-
-
Ismail, N.A.1
Ragab, S.H.2
Elbaky, A.A.3
Shoeib, A.R.S.4
Alhosary, Y.5
Fekry, D.6
-
24
-
-
73949137604
-
Microbiota and SCFA in lean and overweight healthy subjects
-
Schwiertz A, Taras D, Schafer K, Beijer S, Bos NA, Donus C, Hardt PD: Microbiota and SCFA in lean and overweight healthy subjects. Obesity 2010, 18:190-195.
-
(2010)
Obesity
, vol.18
, pp. 190-195
-
-
Schwiertz, A.1
Taras, D.2
Schafer, K.3
Beijer, S.4
Bos, N.A.5
Donus, C.6
Hardt, P.D.7
-
25
-
-
84875370244
-
Microbiota conservation and BMI signatures in adult monozygotic twins
-
Tims S, Derom C, Jonkers DM, Vlietinck R, Saris WH, Kleerebezem M, de Vos WM, Zoetendal EG: Microbiota conservation and BMI signatures in adult monozygotic twins. ISME J 2012, 7:707-717.
-
(2012)
ISME J
, vol.7
, pp. 707-717
-
-
Tims, S.1
Derom, C.2
Jonkers, D.M.3
Vlietinck, R.4
Saris, W.H.5
Kleerebezem, M.6
De Vos, W.M.7
Zoetendal, E.G.8
-
26
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, Cao J, Wang B, Liang H, Zheng H, Xie Y, Tap J, Lepage P, Bertalan M, Batto JM, Hansen T, Le Paslier D, Linneberg A, Nielsen HB, Pelletier E, Renault P: A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010, 464:59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
Nielsen, T.7
Pons, N.8
Levenez, F.9
Yamada, T.10
Mende, D.R.11
Li, J.12
Xu, J.13
Li, S.14
Li, D.15
Cao, J.16
Wang, B.17
Liang, H.18
Zheng, H.19
Xie, Y.20
Tap, J.21
Lepage, P.22
Bertalan, M.23
Batto, J.M.24
Hansen, T.25
Le Paslier, D.26
Linneberg, A.27
Nielsen, H.B.28
Pelletier, E.29
Renault, P.30
more..
-
27
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, Hansen T, Hattori M, Hayashi T, Kleerebezem M, Kurokawa K, Leclerc M, Levenez F, Manichanh C, Nielsen HB, Nielsen T, Pons N, Poulain J, Qin J, Sicheritz-Ponten T, Tims S, et al: Enterotypes of the human gut microbiome. Nature 2011, 473:174-180.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
Fernandes, G.R.7
Tap, J.8
Bruls, T.9
Batto, J.M.10
Bertalan, M.11
Borruel, N.12
Casellas, F.13
Fernandez, L.14
Gautier, L.15
Hansen, T.16
Hattori, M.17
Hayashi, T.18
Kleerebezem, M.19
Kurokawa, K.20
Leclerc, M.21
Levenez, F.22
Manichanh, C.23
Nielsen, H.B.24
Nielsen, T.25
Pons, N.26
Poulain, J.27
Qin, J.28
Sicheritz-Ponten, T.29
Tims, S.30
more..
-
28
-
-
33144460422
-
Differences in fecal microbiota in different European study populations in relation to age, gender, and country: A cross-sectional study
-
Mueller S, Saunier K, Hanisch C, Norin E, Alm L, Midtvedt T, Cresci A, Silvi S, Orpianesi C, Verdenelli MC, Clavel T, Koebnick C, Zunft HJF, Doré J, Blaut M: Differences in fecal microbiota in different European study populations in relation to age, gender, and country: A cross-sectional study. Appl Environ Microbiol 2006, 72:1027-1033.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 1027-1033
-
-
Mueller, S.1
Saunier, K.2
Hanisch, C.3
Norin, E.4
Alm, L.5
Midtvedt, T.6
Cresci, A.7
Silvi, S.8
Orpianesi, C.9
Verdenelli, M.C.10
Clavel, T.11
Koebnick, C.12
Zunft, H.J.F.13
Doré, J.14
Blaut, M.15
-
29
-
-
22144495054
-
Colonic microbiota signatures across five northern European countries
-
Lay C, Rigottier-Gois L, Holmstrom K, Rajilic M, Vaughan EE, de Vos WM, Collins MD, Thiel R, Namsolleck P, Blaut M, Dore J: Colonic microbiota signatures across five northern European countries. Appl Environ Microbiol 2005, 71:4153-4155.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 4153-4155
-
-
Lay, C.1
Rigottier-Gois, L.2
Holmstrom, K.3
Rajilic, M.4
Vaughan, E.E.5
De Vos, W.M.6
Collins, M.D.7
Thiel, R.8
Namsolleck, P.9
Blaut, M.10
Dore, J.11
-
30
-
-
84871732071
-
Genomic variation landscape of the human gut microbiome
-
Schloissnig S, Arumugam M, Sunagawa S, Mitreva M, Tap J, Zhu A, Waller A, Mende DR, Kultima JR, Martin J, Kota K, Sunyaev SR, Weinstock GM, Bork P: Genomic variation landscape of the human gut microbiome. Nature 2013, 493:45-50.
-
(2013)
Nature
, vol.493
, pp. 45-50
-
-
Schloissnig, S.1
Arumugam, M.2
Sunagawa, S.3
Mitreva, M.4
Tap, J.5
Zhu, A.6
Waller, A.7
Mende, D.R.8
Kultima, J.R.9
Martin, J.10
Kota, K.11
Sunyaev, S.R.12
Weinstock, G.M.13
Bork, P.14
-
31
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder J, Kuczynski J, Caporaso JG, Lozupone CA, Lauber C, Clemente JC, Knights D, Knight R, Gordon JI: Human gut microbiome viewed across age and geography. Nature 2012, 486:222-227.
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
Magris, M.7
Hidalgo, G.8
Baldassano, R.N.9
Anokhin, A.P.10
Heath, A.C.11
Warner, B.12
Reeder, J.13
Kuczynski, J.14
Caporaso, J.G.15
Lozupone, C.A.16
Lauber, C.17
Clemente, J.C.18
Knights, D.19
Knight, R.20
Gordon, J.I.21
more..
-
32
-
-
84923080032
-
Gut microbiome of the Hadza hunter-gatherers
-
Schnorr SL, Candela M, Rampelli S, Centanni M, Consolandi C, Basaglia G, Turroni S, Biagi E, Peano C, Severgnini M, Fiori J, Gotti R, De Bellis G, Luiselli D, Brigidi P, Mabulla A, Marlowe F, Henry AG, Crittenden AN: Gut microbiome of the Hadza hunter-gatherers. Nat Commun 2014, 5:3654.
-
(2014)
Nat Commun
, vol.5
, pp. 3654
-
-
Schnorr, S.L.1
Candela, M.2
Rampelli, S.3
Centanni, M.4
Consolandi, C.5
Basaglia, G.6
Turroni, S.7
Biagi, E.8
Peano, C.9
Severgnini, M.10
Fiori, J.11
Gotti, R.12
De Bellis, G.13
Luiselli, D.14
Brigidi, P.15
Mabulla, A.16
Marlowe, F.17
Henry, A.G.18
Crittenden, A.N.19
-
33
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
De Filippo, C, Cavalieri D, Di Paola, M, Ramazzotti M, Poullet JB, Massart S, Collini S, Pieraccini G, Lionetti P: Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci U S A 2010, 107:14691-14696.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 14691-14696
-
-
Cavalieri, D.1
Ramazzotti, M.2
Poullet, J.B.3
Massart, S.4
Collini, S.5
Pieraccini, G.6
Lionetti, P.7
De Filippo, C.8
Di Paola, M.9
-
34
-
-
84896517452
-
Geographical variation of human gut microbial composition
-
Suzuki TA, Worobey M: Geographical variation of human gut microbial composition. Biol Lett 2014, 10:20131037.
-
(2014)
Biol Lett
, vol.10
, pp. 20131037
-
-
Suzuki, T.A.1
Worobey, M.2
-
35
-
-
72449190581
-
Associations between dietary habits and body mass index with gut microbiota composition and fecal water genotoxicity: An observational study in African American and Caucasian American volunteers
-
Mai V, McCrary QM, Sinha R, Glei M: Associations between dietary habits and body mass index with gut microbiota composition and fecal water genotoxicity: An observational study in African American and Caucasian American volunteers. Nutritional J 2009, 8:49.
-
(2009)
Nutritional J
, vol.8
, pp. 49
-
-
Mai, V.1
McCrary, Q.M.2
Sinha, R.3
Glei, M.4
-
36
-
-
84873471120
-
The nonfermentable dietary fiber hydroxypropyl methylcellulose modulates intestinal microbiota
-
Cox LM, Cho I, Young SA, Anderson WH, Waters BJ, Hung SC, Gao Z, Mahana D, Bihan M, Alekseyenko AV, Methé BA, Blaser MJ: The nonfermentable dietary fiber hydroxypropyl methylcellulose modulates intestinal microbiota. FASEB J 2013, 27:692-702.
-
(2013)
FASEB J
, vol.27
, pp. 692-702
-
-
Cox, L.M.1
Cho, I.2
Young, S.A.3
Anderson, W.H.4
Waters, B.J.5
Hung, S.C.6
Gao, Z.7
Mahana, D.8
Bihan, M.9
Alekseyenko, A.V.10
Methé, B.A.11
Blaser, M.J.12
-
37
-
-
79959855078
-
Predicting a human gut microbiota's response to diet in gnotobiotic mice
-
Faith JJ, McNulty NP, Rey FE, Gordon JI: Predicting a human gut microbiota's response to diet in gnotobiotic mice. Science 2011, 333:101-104.
-
(2011)
Science
, vol.333
, pp. 101-104
-
-
Faith, J.J.1
McNulty, N.P.2
Rey, F.E.3
Gordon, J.I.4
-
38
-
-
84883057637
-
ANR MicroObes consortium: Dietary intervention impact on gut microbial gene richness
-
Cotillard A, Kennedy SP, Kong LC, Prifti E, Pons N, Le Chatelier E, Almeida M, Quinquis B, Levenez F, Galleron N, Gougis S, Rizkalla S, Batto JM, Renault P, Doré J, Zucker JD, Clément K, Ehrlich SD, ANR MicroObes consortium: Dietary intervention impact on gut microbial gene richness. Nature 2013, 500:585-588.
-
(2013)
Nature
, vol.500
, pp. 585-588
-
-
Cotillard, A.1
Kennedy, S.P.2
Kong, L.C.3
Prifti, E.4
Pons, N.5
Le Chatelier, E.6
Almeida, M.7
Quinquis, B.8
Levenez, F.9
Galleron, N.10
Gougis, S.11
Rizkalla, S.12
Batto, J.M.13
Renault, P.14
Doré, J.15
Zucker, J.D.16
Clément, K.17
Ehrlich, S.D.18
-
39
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, Ling AV, Devlin AS, Varma Y, Fischbach MA, Biddinger SB, Dutton RJ, Turnbaugh PJ: Diet rapidly and reproducibly alters the human gut microbiome. Nature 2014, 505:559-563.
-
(2014)
Nature
, vol.505
, pp. 559-563
-
-
David, L.A.1
Maurice, C.F.2
Carmody, R.N.3
Gootenberg, D.B.4
Button, J.E.5
Wolfe, B.E.6
Ling, A.V.7
Devlin, A.S.8
Varma, Y.9
Fischbach, M.A.10
Biddinger, S.B.11
Dutton, R.J.12
Turnbaugh, P.J.13
-
40
-
-
0034814007
-
The host genotype affects the bacterial community in the human gastrointestinal tract
-
Zoetendal EG, Akkermans ADL, Akkermans-van Vliet WM, de Visser JAGM, de Vos WM: The host genotype affects the bacterial community in the human gastrointestinal tract. Microbial Ecology Health Dis 2001, 13:129-134.
-
(2001)
Microbial Ecology Health Dis
, vol.13
, pp. 129-134
-
-
Zoetendal, E.G.1
Akkermans, A.D.L.2
Akkermans-Van Vliet, W.M.3
De Visser, J.A.G.M.4
De Vos, W.M.5
-
41
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI: A core gut microbiome in obese and lean twins. Nature 2009, 457:480-487.
-
(2009)
Nature
, vol.457
, pp. 480-487
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
Ley, R.E.6
Sogin, M.L.7
Jones, W.J.8
Roe, B.A.9
Affourtit, J.P.10
Egholm, M.11
Henrissat, B.12
Heath, A.C.13
Knight, R.14
Gordon, J.I.15
-
42
-
-
79952757721
-
Composition, variability, and temporal stability of the intestinal microbiota of the elderly
-
Claesson MJ, Cusack S, O'Sullivan O, Greene-Diniz R, de Weerd H, Flannery E, Marchesi JR, Falush D, Dinan T, Fitzgerald G, Stanton C, van Sinderen, D, O'Connor M, Harnedy N, O'Connor K, Henry C, O'Mahony D, Fitzgerald AP, Shanahan D, Twomey C, Hill C, Ross RP, O'Toole PW: Composition, variability, and temporal stability of the intestinal microbiota of the elderly. Proc Natl Acad Sci U S A 2011, 108:4586-4591.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 4586-4591
-
-
Claesson, M.J.1
Cusack, S.2
O'Sullivan, O.3
Greene-Diniz, R.4
De Weerd, H.5
Flannery, E.6
Marchesi, J.R.7
Falush, D.8
Dinan, T.9
Fitzgerald, G.10
Stanton, C.11
O'Connor, M.12
Harnedy, N.13
O'Connor, K.14
Henry, C.15
O'Mahony, D.16
Fitzgerald, A.P.17
Shanahan, D.18
Twomey, C.19
Hill, C.20
Ross, R.P.21
O'Toole, P.W.22
Van Sinderen, D.23
more..
-
43
-
-
34547129847
-
Development of the human infant intestinal microbiota
-
Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO: Development of the human infant intestinal microbiota. PLoS Biol 2007, 5:e177.
-
(2007)
PLoS Biol
, vol.5
, pp. e177
-
-
Palmer, C.1
Bik, E.M.2
Digiulio, D.B.3
Relman, D.A.4
Brown, P.O.5
-
44
-
-
66549102207
-
Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation
-
Antonopoulos DA, Huse SM, Morrison HG, Schmidt TM, Sogin ML, Young VB: Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation. Infect Immun 2009, 77:2367-2375.
-
(2009)
Infect Immun
, vol.77
, pp. 2367-2375
-
-
Antonopoulos, D.A.1
Huse, S.M.2
Morrison, H.G.3
Schmidt, T.M.4
Sogin, M.L.5
Young, V.B.6
-
45
-
-
56849106496
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
-
Dethlefsen L, Huse S, Sogin ML, Relman DA: The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 2008, 6:e280.
-
(2008)
PLoS Biol
, vol.6
, pp. e280
-
-
Dethlefsen, L.1
Huse, S.2
Sogin, M.L.3
Relman, D.A.4
-
46
-
-
84865286121
-
Antibiotics, microbiota, and immune defense
-
Ubeda C, Pamer EG: Antibiotics, microbiota, and immune defense. Trends Immunol 2012, 33:459-466.
-
(2012)
Trends Immunol
, vol.33
, pp. 459-466
-
-
Ubeda, C.1
Pamer, E.G.2
-
47
-
-
34248152283
-
Long-term ecological impacts of antibiotic administration on the human intestinal microbiota
-
Jernberg C, Lofmark S, Edlund C, Jansson JK: Long-term ecological impacts of antibiotic administration on the human intestinal microbiota. ISME J 2007, 1:56-66.
-
(2007)
ISME J
, vol.1
, pp. 56-66
-
-
Jernberg, C.1
Lofmark, S.2
Edlund, C.3
Jansson, J.K.4
-
48
-
-
78650847143
-
Mode of delivery affects the bacterial community in the newborn gut
-
Biasucci G, Rubini M, Riboni S, Morelli L, Bessi E, Retetangos C: Mode of delivery affects the bacterial community in the newborn gut. Early Hum Dev 2010, 86:13-15.
-
(2010)
Early Hum Dev
, vol.86
, pp. 13-15
-
-
Biasucci, G.1
Rubini, M.2
Riboni, S.3
Morelli, L.4
Bessi, E.5
Retetangos, C.6
-
49
-
-
77955386857
-
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
-
Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N, Knight R: Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci USA 2010, 107:11971-11975.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 11971-11975
-
-
Dominguez-Bello, M.G.1
Costello, E.K.2
Contreras, M.3
Magris, M.4
Hidalgo, G.5
Fierer, N.6
Knight, R.7
-
50
-
-
44849102151
-
Mode of delivery - effects on gut microbiota and humoral immunity
-
Huurre A, Kalliomaki M, Rautava S, Rinne M, Salminen S, Isolauri E: Mode of delivery - effects on gut microbiota and humoral immunity. Neonatology 2008, 93:236-240.
-
(2008)
Neonatology
, vol.93
, pp. 236-240
-
-
Huurre, A.1
Kalliomaki, M.2
Rautava, S.3
Rinne, M.4
Salminen, S.5
Isolauri, E.6
-
51
-
-
84874960901
-
Comparative analysis of fecal microflora of healthy full-term Indian infants born with different methods of delivery (vaginal vs cesarean): Acinetobacter sp. Prevalence in vaginally born infants
-
Pandey PK, Verma P, Kumar H, Bavdekar A, Patole MS, Shouche YS: Comparative analysis of fecal microflora of healthy full-term Indian infants born with different methods of delivery (vaginal vs cesarean): Acinetobacter sp. prevalence in vaginally born infants. J Biosci 2012, 37:989-998.
-
(2012)
J Biosci
, vol.37
, pp. 989-998
-
-
Pandey, P.K.1
Verma, P.2
Kumar, H.3
Bavdekar, A.4
Patole, M.S.5
Shouche, Y.S.6
-
52
-
-
84893929310
-
Perinatal pet exposure, faecal microbiota, and wheezy bronchitis: Is there a connection?
-
Nermes M, Niinivirta K, Nylund L, Laitinen K, Matomäki J, Salminen S, Isolauri E: Perinatal pet exposure, faecal microbiota, and wheezy bronchitis: is there a connection? ISRN Allergy 2013, 2013:82:7934.
-
(2013)
ISRN Allergy 2013
, vol.82
, pp. 7934
-
-
Nermes, M.1
Niinivirta, K.2
Nylund, L.3
Laitinen, K.4
Matomäki, J.5
Salminen, S.6
Isolauri, E.7
-
53
-
-
84881484788
-
Cohabiting family members share microbiota with one another and with their dogs
-
Song SJ, Lauber C, Costello EK, Lozupone CA, Humphrey G, Berg-Lyons D, Caporaso JG, Knights D, Clemente JC, Nakielny S, Gordon JI, Fierer N, Knight R: Cohabiting family members share microbiota with one another and with their dogs. eLife 2013, 2:e00458.
-
(2013)
ELife
, vol.2
, pp. e00458
-
-
Song, S.J.1
Lauber, C.2
Costello, E.K.3
Lozupone, C.A.4
Humphrey, G.5
Berg-Lyons, D.6
Caporaso, J.G.7
Knights, D.8
Clemente, J.C.9
Nakielny, S.10
Gordon, J.I.11
Fierer, N.12
Knight, R.13
-
54
-
-
77956109573
-
Genetic make up and structure of Colombian populations by means of uniparental and biparental DNA markers
-
Rojas W, Parra MV, Campo O, Caro MA, Lopera JG, Arias W, Duque C, Naranjo A, Garcia J, Vergara C, Lopera J, Hernandez E, Valencia A, Caicedo Y, Cuartas M, Gutiérrez J, López S, Ruiz-Linares A, Bedoya G: Genetic make up and structure of Colombian populations by means of uniparental and biparental DNA markers. Am J Phys Anthropol 2010, 143:13-20.
-
(2010)
Am J Phys Anthropol
, vol.143
, pp. 13-20
-
-
Rojas, W.1
Parra, M.V.2
Campo, O.3
Caro, M.A.4
Lopera, J.G.5
Arias, W.6
Duque, C.7
Naranjo, A.8
Garcia, J.9
Vergara, C.10
Lopera, J.11
Hernandez, E.12
Valencia, A.13
Caicedo, Y.14
Cuartas, M.15
Gutiérrez, J.16
López, S.17
Ruiz-Linares, A.18
Bedoya, G.19
-
55
-
-
84888230853
-
Reconstructing the population genetic history of the Caribbean
-
Moreno-Estrada A, Gravel S, Zakharia F, McCauley JL, Byrnes JK, Gignoux CR, Ortiz-Tello PA, Martínez RJ, Hedges DJ, Morris RW, Eng C, Sandoval K, Acevedo-Acevedo S, Norman PJ, Layrisse Z, Parham P, Martínez-Cruzado JC, González Burchard E, Cuccaro ML, Martin ER, Bustamante CD: Reconstructing the population genetic history of the Caribbean. PLoS Genet 2013, 9:e1003925.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003925
-
-
Moreno-Estrada, A.1
Gravel, S.2
Zakharia, F.3
Mccauley, J.L.4
Byrnes, J.K.5
Gignoux, C.R.6
Ortiz-Tello, P.A.7
Martínez, R.J.8
Hedges, D.J.9
Morris, R.W.10
Eng, C.11
Sandoval, K.12
Acevedo-Acevedo, S.13
Norman, P.J.14
Layrisse, Z.15
Parham, P.16
Martínez-Cruzado, J.C.17
González, B.E.18
Cuccaro, M.L.19
Martin, E.R.20
Bustamante, C.D.21
more..
-
56
-
-
84892684329
-
The 1000 Genomes Project: Reconstructing Native American migrations from whole-genome and whole-exome data
-
Gravel S, Zakharia F, Moreno-Estrada A, Byrnes JK, Muzzio M, Rodriguez-Flores JL, Kenny EE, Gignoux CR, Maples BK, Guiblet W, Dutil J, Via M, Sandoval K, Bedoya G, Oleksyk TK, Ruiz-Linares A, Burchard EG, Martinez-Cruzado JC, Bustamante CD, The 1000 Genomes Project: Reconstructing Native American migrations from whole-genome and whole-exome data. PLoS Genet 2013, 9:e1004023.
-
(2013)
PLoS Genet
, vol.9
, pp. e1004023
-
-
Gravel, S.1
Zakharia, F.2
Moreno-Estrada, A.3
Byrnes, J.K.4
Muzzio, M.5
Rodriguez-Flores, J.L.6
Kenny, E.E.7
Gignoux, C.R.8
Maples, B.K.9
Guiblet, W.10
Dutil, J.11
Via, M.12
Sandoval, K.13
Bedoya, G.14
Oleksyk, T.K.15
Ruiz-Linares, A.16
Burchard, E.G.17
Martinez-Cruzado, J.C.18
Bustamante, C.D.19
-
57
-
-
77955485098
-
-
Profamilia Colombia, Instituto Nacional de Salud, Universidad de Antioquia, Organización Panamericana de la Salud, Instituto Colombiano de Bienestar Familiar:, Bogotá: Instituto Colombiano de Bienestar Familiar
-
Profamilia Colombia, Instituto Nacional de Salud, Universidad de Antioquia, Organización Panamericana de la Salud, Instituto Colombiano de Bienestar Familiar: Encuesta Nacional de la Situación Nutricional en Colombia, 2005. Bogotá: Instituto Colombiano de Bienestar Familiar; 2006:445.
-
(2006)
Encuesta Nacional de la Situación Nutricional en Colombia, 2005
, pp. 445
-
-
-
58
-
-
84924210772
-
-
Profamilia, Instituto Nacional de Salud, Instituto Colombiano de Bienestar Familiar, Ministerio de la Protección Social, Coldeportes, Organización Panamericana de la Salud, Bogotá: Instituto Colombiano de Bienestar Familiar
-
Profamilia, Instituto Nacional de Salud, Instituto Colombiano de Bienestar Familiar, Ministerio de la Protección Social, Coldeportes, Organización Panamericana de la Salud, Programa Mundial de Alimentos, Departamento Administrativo Nacional de Estadística, Asociación Colombiana de Facultades de Nutrición y Dietética: Encuesta Nacional de la Situación Nutricional en Colombia 2010 ENSIN. Bogotá: Instituto Colombiano de Bienestar Familiar; 2011:509.
-
(2011)
Programa Mundial de Alimentos, Departamento Administrativo Nacional de Estadística, Asociación Colombiana de Facultades de Nutrición Y Dietética: Encuesta Nacional de la Situación Nutricional en Colombia 2010 ENSIN
, pp. 509
-
-
-
59
-
-
33847233644
-
Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces
-
Duncan SH, Belenguer A, Holtrop G, Johnstone AM, Flint HJ, Lobley GE: Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces. Appl Environ Microbiol 2007, 73:1073-1078.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1073-1078
-
-
Duncan, S.H.1
Belenguer, A.2
Holtrop, G.3
Johnstone, A.M.4
Flint, H.J.5
Lobley, G.E.6
-
60
-
-
60549086580
-
Human gut microbiota in obesity and after gastric bypass
-
Zhang H, DiBaise JK, Zuccolo A, Kudrna D, Braidotti M, Yu Y, Parameswaran P, Crowell MD, Wing R, Rittmann BE, Krajmalnik-Brown R: Human gut microbiota in obesity and after gastric bypass. Proc Natl Acad Sci USA 2009, 106:2365-2370.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 2365-2370
-
-
Zhang, H.1
DiBaise, J.K.2
Zuccolo, A.3
Kudrna, D.4
Braidotti, M.5
Yu, Y.6
Parameswaran, P.7
Crowell, M.D.8
Wing, R.9
Rittmann, B.E.10
Krajmalnik-Brown, R.11
-
61
-
-
78751580602
-
Dominant and diet-responsive groups of bacteria within the human colonic microbiota
-
Walker AW, Ince J, Duncan SH, Webster LM, Holtrop G, Ze X, Brown D, Stares MD, Scott P, Bergerat A, Louis P, McIntosh F, Johnstone AM, Lobley GE, Parkhill J, Flint HJ: Dominant and diet-responsive groups of bacteria within the human colonic microbiota. ISME J 2011, 5:220-230.
-
(2011)
ISME J
, vol.5
, pp. 220-230
-
-
Walker, A.W.1
Ince, J.2
Duncan, S.H.3
Webster, L.M.4
Holtrop, G.5
Ze, X.6
Brown, D.7
Stares, M.D.8
Scott, P.9
Bergerat, A.10
Louis, P.11
Mcintosh, F.12
Johnstone, A.M.13
Lobley, G.E.14
Parkhill, J.15
Flint, H.J.16
-
62
-
-
79960904343
-
Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing
-
Nam YD, Jung MJ, Roh SW, Kim MS, Bae JW: Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing. PLoS One 2011, 6:e22109.
-
(2011)
PLoS One
, vol.6
, pp. e22109
-
-
Nam, Y.D.1
Jung, M.J.2
Roh, S.W.3
Kim, M.S.4
Bae, J.W.5
-
64
-
-
80052781720
-
Black Box Chimera Check (B2C2): A windows-based software for batch depletion of chimeras from bacterial 16S rRNA gene datasets
-
Gontcharova VYE, Wolcott RD, Hollister EB, Gentry TJ, Dowd SE: Black Box Chimera Check (B2C2): A windows-based software for batch depletion of chimeras from bacterial 16S rRNA gene datasets. Open Microbiol J 2010, 4:6.
-
(2010)
Open Microbiol J
, vol.4
, pp. 6
-
-
Gontcharova, V.Y.E.1
Wolcott, R.D.2
Hollister, E.B.3
Gentry, T.J.4
Dowd, S.E.5
-
65
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC: Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010, 26:2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
66
-
-
75249107844
-
PyNAST: A flexible tool for aligning sequences to a template alignment
-
Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R: PyNAST: A flexible tool for aligning sequences to a template alignment. Bioinformatics 2010, 26:266-267.
-
(2010)
Bioinformatics
, vol.26
, pp. 266-267
-
-
Caporaso, J.G.1
Bittinger, K.2
Bushman, F.D.3
DeSantis, T.Z.4
Andersen, G.L.5
Knight, R.6
-
67
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL: Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 2006, 72:5069-5072.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
68
-
-
34548293679
-
Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR: Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007, 73:5261-5267.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
69
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Gonzalez Pena A, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R: QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010, 7:335-336.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Gonzalez, P.A.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
Mcdonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
70
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter M, Rosselló-Móra R: Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 2009, 106:19126-19131.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rosselló-Móra, R.2
-
71
-
-
84893511241
-
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
-
Kim M, Oh HS, Park SC, Chun J: Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014, 64:346-351.
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 346-351
-
-
Kim, M.1
Oh, H.S.2
Park, S.C.3
Chun, J.4
-
72
-
-
84881478467
-
Robustness of gut microbiota of healthy adults in response to probiotic intervention revealed by high-throughput pyrosequencing
-
Kim SW, Suda W, Kim S, Oshima K, Fukuda S, Ohno H, Morita H, Hattori M: Robustness of gut microbiota of healthy adults in response to probiotic intervention revealed by high-throughput pyrosequencing. DNA Res 2013, 20:241-253.
-
(2013)
DNA Res
, vol.20
, pp. 241-253
-
-
Kim, S.W.1
Suda, W.2
Kim, S.3
Oshima, K.4
Fukuda, S.5
Ohno, H.6
Morita, H.7
Hattori, M.8
-
73
-
-
84903134830
-
Persistent gut microbiota immaturity in malnourished Bangladeshi children
-
Subramanian S, Huq S, Yatsunenko T, Haque R, Mahfuz M, Alam MA, Benezra A, DeStefano J, Meier MF, Muegge BD, Barratt MJ, VanArendonk LG, Zhang Q, Province MA, Petri WA Jr, Ahmed T, Gordon JI: Persistent gut microbiota immaturity in malnourished Bangladeshi children. Nature 2014, 510:417-421.
-
(2014)
Nature
, vol.510
, pp. 417-421
-
-
Subramanian, S.1
Huq, S.2
Yatsunenko, T.3
Haque, R.4
Mahfuz, M.5
Alam, M.A.6
Benezra, A.7
Destefano, J.8
Meier, M.F.9
Muegge, B.D.10
Barratt, M.J.11
Vanarendonk, L.G.12
Zhang, Q.13
Province, M.A.14
Petri, W.A.15
Ahmed, T.16
Gordon, J.I.17
-
74
-
-
77957860163
-
V-Xtractor: An open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences
-
Hartmann M, Howes CG, Abarenkov K, Mohn WW, Nilsson RH: V-Xtractor: An open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences. J Microbiol Methods 2010, 83:250-253.
-
(2010)
J Microbiol Methods
, vol.83
, pp. 250-253
-
-
Hartmann, M.1
Howes, C.G.2
Abarenkov, K.3
Mohn, W.W.4
Nilsson, R.H.5
-
75
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
Lozupone C, Knight R: UniFrac: A new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 2005, 71:8228-8235.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
76
-
-
73449128271
-
Fast Uni Frac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
-
Hamady M, Lozupone C, Knight R: Fast Uni Frac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J 2010, 4:17-27.
-
(2010)
ISME J
, vol.4
, pp. 17-27
-
-
Hamady, M.1
Lozupone, C.2
Knight, R.3
-
77
-
-
14844299375
-
Implementing false discovery rate control: Increasing your power
-
Verhoeven KJF, Simonsen KL, McIntyre LM: Implementing false discovery rate control: increasing your power. Oikos 2005, 108:643-647.
-
(2005)
Oikos
, vol.108
, pp. 643-647
-
-
Verhoeven, K.J.F.1
Simonsen, K.L.2
Mcintyre, L.M.3
-
78
-
-
84855199947
-
-
R Development Core Team: R:, Vienna, Austria: R Foundation for Statistical Computing
-
R Development Core Team: R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing; 2012.
-
(2012)
A Language and Environment for Statistical Computing
-
-
-
79
-
-
0032425501
-
Benefits of plant diversity to ecosystems: Immediate, filter and founder effects
-
Grime JP: Benefits of plant diversity to ecosystems: immediate, filter and founder effects. J Ecol 1998, 86:902-910.
-
(1998)
J Ecol
, vol.86
, pp. 902-910
-
-
Grime, J.P.1
-
80
-
-
84863022950
-
Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
-
Kostic AD, Gevers D, Pedamallu CS, Michaud M, Duke F, Earl AM, Ojesina AI, Jung J, Bass AJ, Tabernero J, Baselga J, Liu C, Shivdasani RA, Ogino S, Birren BW, Huttenhower C, Garrett WS, Meyerson M: Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. Genome Res 2012, 22:292-298.
-
(2012)
Genome Res
, vol.22
, pp. 292-298
-
-
Kostic, A.D.1
Gevers, D.2
Pedamallu, C.S.3
Michaud, M.4
Duke, F.5
Earl, A.M.6
Ojesina, A.I.7
Jung, J.8
Bass, A.J.9
Tabernero, J.10
Baselga, J.11
Liu, C.12
Shivdasani, R.A.13
Ogino, S.14
Birren, B.W.15
Huttenhower, C.16
Garrett, W.S.17
Meyerson, M.18
-
81
-
-
77956569409
-
Enterobacteriaceae act in concert with the gut microbiota to induce spontaneous and maternally transmitted colitis
-
Garrett WS, Gallini CA, Yatsunenko T, Michaud M, DuBois A, Delaney ML, Punit S, Karlsson M, Bry L, Glickman JN, Gordon JI, Onderdonk AB, Glimcher LH: Enterobacteriaceae act in concert with the gut microbiota to induce spontaneous and maternally transmitted colitis. Cell Host Microbe 2010, 8:292-300.
-
(2010)
Cell Host Microbe
, vol.8
, pp. 292-300
-
-
Garrett, W.S.1
Gallini, C.A.2
Yatsunenko, T.3
Michaud, M.4
DuBois, A.5
Delaney, M.L.6
Punit, S.7
Karlsson, M.8
Bry, L.9
Glickman, J.N.10
Gordon, J.I.11
Onderdonk, A.B.12
Glimcher, L.H.13
-
82
-
-
84055206995
-
Intestinal host-microbe interactions under physiological and pathological conditions
-
Bibiloni R, Schiffrin EJ: Intestinal host-microbe interactions under physiological and pathological conditions. Int J Inflamm 2010, 2010:386-956.
-
(2010)
Int J Inflamm 2010
, pp. 386-956
-
-
Bibiloni, R.1
Schiffrin, E.J.2
-
83
-
-
84878971321
-
Microbiota-induced activation of epithelial IL-6 signaling links inflammasome-driven inflammation with transmissible cancer
-
Hu B, Elinav E, Huber S, Strowig T, Hao L, Hafemann A, Jin C, Eisenbarth SC, Flavell RA: Microbiota-induced activation of epithelial IL-6 signaling links inflammasome-driven inflammation with transmissible cancer. Proc Natl Acad Sci USA 2013, 110:9862-9867.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 9862-9867
-
-
Hu, B.1
Elinav, E.2
Huber, S.3
Strowig, T.4
Hao, L.5
Hafemann, A.6
Jin, C.7
Eisenbarth, S.C.8
Flavell, R.A.9
-
84
-
-
84883478660
-
Gut microbiota from twins discordant for obesity modulate metabolism in mice
-
Ridaura VK, Faith JJ, Rey FE, Cheng J, Duncan AE, Kau AL, Griffin NW, Lombard V, Henrissat B, Bain JR, Muehlbauer MJ, Ilkayeva O, Semenkovich CF, Funai K, Hayashi DK, Lyle BJ, Martini MC, Ursell LK, Clemente JC, Van Treuren W, Walters WA, Knight R, Newgard CB, Heath AC, Gordon JI: Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science 2013, 341:1241214.
-
(2013)
Science
, vol.341
, pp. 1241214
-
-
Ridaura, V.K.1
Faith, J.J.2
Rey, F.E.3
Cheng, J.4
Duncan, A.E.5
Kau, A.L.6
Griffin, N.W.7
Lombard, V.8
Henrissat, B.9
Bain, J.R.10
Muehlbauer, M.J.11
Ilkayeva, O.12
Semenkovich, C.F.13
Funai, K.14
Hayashi, D.K.15
Lyle, B.J.16
Martini, M.C.17
Ursell, L.K.18
Clemente, J.C.19
Van Treuren, W.20
Walters, W.A.21
Knight, R.22
Newgard, C.B.23
Heath, A.C.24
Gordon, J.I.25
more..
-
85
-
-
70349631208
-
Monitoring bacterial community of human gut microbiota reveals an increase in Lactobacillus in obese patients and Methanogens in anorexic patients
-
Armougom F, Henry M, Vialettes B, Raccah D, Raoult D: Monitoring bacterial community of human gut microbiota reveals an increase in Lactobacillus in obese patients and Methanogens in anorexic patients. PLoS One 2009, 4:e7125.
-
(2009)
PLoS One
, vol.4
, pp. e7125
-
-
Armougom, F.1
Henry, M.2
Vialettes, B.3
Raccah, D.4
Raoult, D.5
-
86
-
-
77954672686
-
Gut microbiota composition is associated with body weight, weight gain and biochemical parameters in pregnant women
-
Santacruz A, Collado MC, Garcia-Valdes L, Segura MT, Martin-Lagos JA, Anjos T, Marti-Romero M, Lopez RM, Florido J, Campoy C, Sanz Y: Gut microbiota composition is associated with body weight, weight gain and biochemical parameters in pregnant women. Br J Nutr 2010, 104:83-92.
-
(2010)
Br J Nutr
, vol.104
, pp. 83-92
-
-
Santacruz, A.1
Collado, M.C.2
Garcia-Valdes, L.3
Segura, M.T.4
Martin-Lagos, J.A.5
Anjos, T.6
Marti-Romero, M.7
Lopez, R.M.8
Florido, J.9
Campoy, C.10
Sanz, Y.11
-
87
-
-
84865055757
-
Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome
-
Zupancic ML, Cantarel BL, Liu Z, Drabek EF, Ryan KA, Cirimotich S, Jones C, Knight R, Walters WA, Knights D, Mongodin EF, Horenstein RB, Mitchell BD, Steinle N, Snitker S, Shuldiner AR, Fraser CM: Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome. PLoS One 2012, 7:e43052.
-
(2012)
PLoS One
, vol.7
, pp. e43052
-
-
Zupancic, M.L.1
Cantarel, B.L.2
Liu, Z.3
Drabek, E.F.4
Ryan, K.A.5
Cirimotich, S.6
Jones, C.7
Knight, R.8
Walters, W.A.9
Knights, D.10
Mongodin, E.F.11
Horenstein, R.B.12
Mitchell, B.D.13
Steinle, N.14
Snitker, S.15
Shuldiner, A.R.16
Fraser, C.M.17
-
88
-
-
79960773690
-
Nutritional intake of Korean population before and after adjusting for within-individual variations: 2001 Korean National Health and Nutrition Survey Data
-
Kim DW, Shim JE, Paik HY, Song WO, Joung H: Nutritional intake of Korean population before and after adjusting for within-individual variations: 2001 Korean National Health and Nutrition Survey Data. Nutr Res Pract 2011, 5:266-274.
-
(2011)
Nutr Res Pract
, vol.5
, pp. 266-274
-
-
Kim, D.W.1
Shim, J.E.2
Paik, H.Y.3
Song, W.O.4
Joung, H.5
-
91
-
-
79951728889
-
-
(volume editor):, Vienna (Austria): European Commission, Health and Consumer Protection, Directorate-General
-
Elmadfa I (volume editor): European Nutrition and Health Report 2009. Vienna (Austria): European Commission, Health and Consumer Protection, Directorate-General; 2009.
-
(2009)
European Nutrition and Health Report 2009
-
-
Elmadfa, I.1
-
92
-
-
35548995817
-
Analytical dietary fiber database for the National Health and Nutrition Survey in Korea
-
Yoonna L, Hae-Jeung L, Haeng-Shin L, Young-Ai J, Cho-il K: Analytical dietary fiber database for the National Health and Nutrition Survey in Korea. J Food Composition Anal 2008, 21:S35-S42.
-
(2008)
J Food Composition Anal
, vol.21
, pp. S35-S42
-
-
Yoonna, L.1
Hae-Jeung, L.2
Haeng-Shin, L.3
Young-Ai, J.4
Cho-Il, K.5
-
93
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P: An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J 2012, 6:610-618.
-
(2012)
ISME J
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
Desantis, T.Z.5
Probst, A.6
Andersen, G.L.7
Knight, R.8
Hugenholtz, P.9
-
94
-
-
84858709310
-
Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis
-
Bahl MI, Bergstrom A, Licht TR: Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis. FEMS Microbiol Lett 2012, 329:193-197.
-
(2012)
FEMS Microbiol Lett
, vol.329
, pp. 193-197
-
-
Bahl, M.I.1
Bergstrom, A.2
Licht, T.R.3
-
95
-
-
70350110294
-
High-fat diet determines the composition of the murine gut microbiome independently of obesity
-
Hildebrandt MA, Hoffmann C, Sherrill-Mix SA, Keilbaugh SA, Hamady M, Chen YY, Knight R, Ahima RS, Bushman F, Wu GD: High-fat diet determines the composition of the murine gut microbiome independently of obesity. Gastroenterology 2009, 137:1716-1724.
-
(2009)
Gastroenterology
, vol.137
, pp. 1716-1724
-
-
Hildebrandt, M.A.1
Hoffmann, C.2
Sherrill-Mix, S.A.3
Keilbaugh, S.A.4
Hamady, M.5
Chen, Y.Y.6
Knight, R.7
Ahima, R.S.8
Bushman, F.9
Wu, G.D.10
-
96
-
-
58149280426
-
Developmental changes of gut microflora and enzyme activity in rat pups exposed to fat-rich diet
-
Mozes S, Bujnakova D, Sefcikova Z, Kmet V: Developmental changes of gut microflora and enzyme activity in rat pups exposed to fat-rich diet. Obesity 2008, 16:2610-2615.
-
(2008)
Obesity
, vol.16
, pp. 2610-2615
-
-
Mozes, S.1
Bujnakova, D.2
Sefcikova, Z.3
Kmet, V.4
-
97
-
-
54249110955
-
Development of a real-time PCR method for Firmicutes and Bacteroidetes in faeces and its application to quantify intestinal population of obese and lean pigs
-
Guo X, Xia X, Tang R, Zhou J, Zhao H, Wang K: Development of a real-time PCR method for Firmicutes and Bacteroidetes in faeces and its application to quantify intestinal population of obese and lean pigs. Lett Appl Microbiol 2008, 47:367-373.
-
(2008)
Lett Appl Microbiol
, vol.47
, pp. 367-373
-
-
Guo, X.1
Xia, X.2
Tang, R.3
Zhou, J.4
Zhao, H.5
Wang, K.6
-
98
-
-
84878465280
-
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
-
Everard A, Belzer C, Geurts L, Ouwerkerk JP, Druart C, Bindels LB, Guiot Y, Derrien M, Muccioli GG, Delzenne NM, Schrenze J, Cani PD: Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity. Proc Natl Acad Sci U S A 2013, 110:9066-9071.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 9066-9071
-
-
Everard, A.1
Belzer, C.2
Geurts, L.3
Ouwerkerk, J.P.4
Druart, C.5
Bindels, L.B.6
Guiot, Y.7
Derrien, M.8
Muccioli, G.G.9
Delzenne, N.M.10
Schrenze, J.11
Cani, P.D.12
-
99
-
-
84886695993
-
Lactobacillus reuteri and Escherichia coli in the human gut microbiota may predict weight gain associated with vancomycin treatment
-
Million M, Thuny F, Angelakis E, Casalta JP, Giorgi R, Habib G, Raoult D: Lactobacillus reuteri and Escherichia coli in the human gut microbiota may predict weight gain associated with vancomycin treatment. Nutrition & Diabetes 2013, 3:e87.
-
(2013)
Nutrition & Diabetes
, vol.3
, pp. e87
-
-
Million, M.1
Thuny, F.2
Angelakis, E.3
Casalta, J.P.4
Giorgi, R.5
Habib, G.6
Raoult, D.7
-
100
-
-
84881260064
-
Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome
-
Bhatt AS, Freeman SS, Herrera AF, Pedamallu CS, Gevers D, Duke F, Jung J, Michaud M, Walker BJ, Young S, Earl AM, Kostic AD, Ojesina AI, Hasserjian R, Ballen KK, Chen YB, Hobbs G, Antin JH, Soiffer RJ, Baden LR, Garrett WS, Hornick JL, Marty FM, Meyerson M: Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome. N Engl J Med 2013, 369:517-528.
-
(2013)
N Engl J Med
, vol.369
, pp. 517-528
-
-
Bhatt, A.S.1
Freeman, S.S.2
Herrera, A.F.3
Pedamallu, C.S.4
Gevers, D.5
Duke, F.6
Jung, J.7
Michaud, M.8
Walker, B.J.9
Young, S.10
Earl, A.M.11
Kostic, A.D.12
Ojesina, A.I.13
Hasserjian, R.14
Ballen, K.K.15
Chen, Y.B.16
Hobbs, G.17
Antin, J.H.18
Soiffer, R.J.19
Baden, L.R.20
Garrett, W.S.21
Hornick, J.L.22
Marty, F.M.23
Meyerson, M.24
more..
-
101
-
-
84879245628
-
Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver disease
-
e861-863
-
Raman M, Ahmed I, Gillevet PM, Probert CS, Ratcliffe NM, Smith S, Greenwood R, Sikaroodi M, Lam V, Crotty P, Bailey J, Myers RP, Rioux KP: Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver disease. Clin Gastroenterol Hepatol 2013, 11:868-875. e861-863.
-
(2013)
Clin Gastroenterol Hepatol
, vol.11
, pp. 868-875
-
-
Raman, M.1
Ahmed, I.2
Gillevet, P.M.3
Probert, C.S.4
Ratcliffe, N.M.5
Smith, S.6
Greenwood, R.7
Sikaroodi, M.8
Lam, V.9
Crotty, P.10
Bailey, J.11
Myers, R.P.12
Rioux, K.P.13
-
102
-
-
84876740446
-
Molecular characterization of the fecal microbiota in patients with nonalcoholic steatohepatitis-a longitudinal study
-
Wong VW, Tse CH, Lam TT, Wong GL, Chim AM, Chu WC, Yeung DK, Law PT, Kwan HS, Yu J, Sung JJ, Chan HL: Molecular characterization of the fecal microbiota in patients with nonalcoholic steatohepatitis-a longitudinal study. PLoS One 2013, 8:e62885.
-
(2013)
PLoS One
, vol.8
, pp. e62885
-
-
Wong, V.W.1
Tse, C.H.2
Lam, T.T.3
Wong, G.L.4
Chim, A.M.5
Chu, W.C.6
Yeung, D.K.7
Law, P.T.8
Kwan, H.S.9
Yu, J.10
Sung, J.J.11
Chan, H.L.12
-
103
-
-
84862997111
-
Human intestinal lumen and mucosa-associated microbiota in patients with colorectal cancer
-
Chen W, Liu F, Ling Z, Tong X, Xiang C: Human intestinal lumen and mucosa-associated microbiota in patients with colorectal cancer. PLoS One 2012, 7:e39743.
-
(2012)
PLoS One
, vol.7
, pp. e39743
-
-
Chen, W.1
Liu, F.2
Ling, Z.3
Tong, X.4
Xiang, C.5
-
104
-
-
79952294582
-
The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes
-
van Passel MW, Kant R, Zoetendal EG, Plugge CM, Derrien M, Malfatti SA, Chain PS, Woyke T, Palva A, de Vos WM, Smidt H: The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes. PLoS One 2011, 6:e16876.
-
(2011)
PLoS One
, vol.6
, pp. e16876
-
-
Van Passel, M.W.1
Kant, R.2
Zoetendal, E.G.3
Plugge, C.M.4
Derrien, M.5
Malfatti, S.A.6
Chain, P.S.7
Woyke, T.8
Palva, A.9
De Vos, W.M.10
Smidt, H.11
-
105
-
-
84869866467
-
Green tea powder and Lactobacillus plantarum affect gut microbiota, lipid metabolism and inflammation in high-fat fed C57BL/6 J mice
-
Axling U, Olsson C, Xu J, Fernandez C, Larsson S, Strom K, Ahrne S, Holm C, Molin G, Berger K: Green tea powder and Lactobacillus plantarum affect gut microbiota, lipid metabolism and inflammation in high-fat fed C57BL/6 J mice. Nutr Metab 2012, 9:105.
-
(2012)
Nutr Metab
, vol.9
, pp. 105
-
-
Axling, U.1
Olsson, C.2
Xu, J.3
Fernandez, C.4
Larsson, S.5
Strom, K.6
Ahrne, S.7
Holm, C.8
Molin, G.9
Berger, K.10
-
106
-
-
84868197954
-
The microbiota of the gut in preschool children with normal and excessive body weight
-
Karlsson CLJ, Onnerfalt J, Xu J, Molin G, Ahrne S, Thorngren-Jerneck K: The microbiota of the gut in preschool children with normal and excessive body weight. Obesity 2012, 20:2257-2261.
-
(2012)
Obesity
, vol.20
, pp. 2257-2261
-
-
Karlsson, C.L.J.1
Onnerfalt, J.2
Xu, J.3
Molin, G.4
Ahrne, S.5
Thorngren-Jerneck, K.6
-
107
-
-
84897960120
-
An increase in the Akkermansia spp. Population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice
-
Shin NR, Lee JC, Lee HY, Kim MS, Whon TW, Lee MS, Bae JW: An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice. Gut 2013, 63:727-735.
-
(2013)
Gut
, vol.63
, pp. 727-735
-
-
Shin, N.R.1
Lee, J.C.2
Lee, H.Y.3
Kim, M.S.4
Whon, T.W.5
Lee, M.S.6
Bae, J.W.7
|