Associations between dietary habits and body mass index with gut microbiota composition and fecal water genotoxicity: An observational study in African American and Caucasian American volunteers

Nutrition Journal

Volumn 8, Issue 1, 2009, Pages

  Mai, Volker ^a   McCrary, Quintece M ^b   Sinha, Rashmi ^c   Glei, Michael ^d  

^a UNIVERSITY OF FLORIDA   (United States)

^b UNIVERSITY OF MARYLAND EASTERN SHORE   (United States)

^c NATIONAL CANCER INSTITUTE   (United States)

^d FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

2 AMINO 1 METHYL 6 PHENYLIMIDAZO[4,5 B]PYRIDINE; 2 AMINO 3,4,8 TRIMETHYLIMIDAZO[4,5 F]QUINAZOLINE; 2 AMINO 3,8 DIMETHYLIMIDAZO[4,5 F]QUINOXALINE; BENZO[A]PYRENE; HETEROCYCLIC AMINE; RNA 16S; UNCLASSIFIED DRUG; VITAMIN D; MUTAGENIC AGENT;

ADULT; AFRICAN AMERICAN; ARTICLE; BACTERIAL COUNT; BACTEROIDES; BIFIDOBACTERIUM; BODY MASS; CALCIUM INTAKE; CARCINOGENESIS; CLOSTRIDIUM; COLORECTAL CANCER; COMET ASSAY; CONTROLLED STUDY; DIETARY FIBER; DIETARY INTAKE; EUROPEAN AMERICAN; FAT INTAKE; FECES; FEMALE; FOOD FREQUENCY QUESTIONNAIRE; GENOTOXICITY; HUMAN; HUMAN CELL; INTESTINE FLORA; LACTIC ACID BACTERIUM; MAJOR CLINICAL STUDY; MALE; MUTAGENICITY; NONHUMAN; VITAMIN INTAKE; BACTERIUM; CAUCASIAN; CELL STRAIN HT29; CELL SURVIVAL; CHEMISTRY; COLON TUMOR; COMPARATIVE STUDY; DIET; DNA DAMAGE; ETHNOLOGY; FEEDING BEHAVIOR; GENETICS; INTESTINE; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MIDDLE AGED; MUTAGEN TESTING; OBESITY; UNITED STATES;

BACTERIA (MICROORGANISMS); BACTEROIDES;

ADULT; AFRICAN AMERICANS; BACTERIA; CELL SURVIVAL; COLONIC NEOPLASMS; DIET; DNA DAMAGE; EUROPEAN CONTINENTAL ANCESTRY GROUP; FECES; FEMALE; FOOD HABITS; HT29 CELLS; HUMANS; INTESTINES; MALE; MARYLAND; MIDDLE AGED; MUTAGENICITY TESTS; MUTAGENS; OBESITY;

EID: 72449190581     PISSN: None     EISSN: 14752891     Source Type: Journal    
DOI: 10.1186/1475-2891-8-49     Document Type: Article

References (51)

1. Biomarkers in Disease and Health. F Branca AB Hanley BL Pool-Zobel H Verhagen, Br J Nutr 2001 86 55 S92 10.1079/BJN2001339 11520424
2. Food, Nutrition, and the Prevention of Cancer: A Global Perspective. World Cancer Research Fund, American Institute for Cancer Research, Washington, D C 2007 10.1111/j.1753-4887.2004.tb00045.x
3. Dietary modification of the intestinal microbiota. V Mai, Nutr Rev 2004 62 235 242 10.1111/j.1753-4887.2004.tb00045.x 15291396
4. Associations of micronutrients with colon cancer risk in African Americans and whites: results from the North Carolina Colon Cancer Study. J Satia-Abouta JA Galanko CF Martin JD Potter A Ammerman RS Sandler, Cancer Epidemiol Biomarkers Prev 2003 12 747 754 10.1093/aje/kwg248 12917206 (Pubitemid 36993165)
5. Associations of total energy and macronutrients with colon cancer risk in African Americans and Whites: results from the North Carolina colon cancer study. J Satia-Abouta JA Galanko JD Potter A Ammerman CF Martin RS Sandler, Am J Epidemiol 2003 158 951 962 10.1002/ijc.20044 14607803 (Pubitemid 37413394)
6. Food groups and colon cancer risk in African-Americans and Caucasians. J Satia-Abouta JA Galanko CF Martin A Ammerman RS Sandler, Int J Cancer 2004 109 728 736 10.1093/aje/kwf221 14999782
7. Heterocyclic amines, meat intake, and association with colon cancer in a population-based study. LM Butler R Sinha RC Millikan CF Martin B Newman MD Gammon AS Ammerman RS Sandler, Am J Epidemiol 2003 157 434 445 10.1111/j.1365-2958.2006.05056.x 12615608
8. A microbial world within us. EG Zoetendal EE Vaughan WM De Vos, Mol Microbiol 2006 59 1639 1650 10.1126/science.310.5751.1118 16553872
9. Timing in collection of stool samples. V Mai OC Stine JG Morris Jr, Science 2005 310 1118 10.3748/wjg.15.81 16293741
10. Recent advances and remaining gaps in our knowledge of associations between gut microbiota and human health. V Mai PV Draganov, World J Gastroenterol 2009 15 81 85 10.1126/science.1110591 19115471
11. Diversity of the human intestinal microbial flora. PB Eckburg EM Bik CN Bernstein E Purdom L Dethlefsen M Sargent SR Gill KE Nelson DA Relman, Science 2005 308 1635 1638 10.1126/science.1124234 15831718
12. Metagenomic analysis of the human distal gut microbiome. SR Gill M Pop RT Deboy PB Eckburg PJ Turnbaugh BS Samuel JI Gordon DA Relman CM Fraser-Liggett KE Nelson, Science 2006 312 1355 1359 10.1126/science.291.5505.881 16741115
13. Molecular analysis of commensal host-microbial relationships in the intestine. LV Hooper MH Wong A Thelin L Hansson PG Falk JI Gordon, Science 2001 291 881 884 10.1159/000111102 11157169
14. Mode of Delivery - Effects on Gut Microbiota and Humoral Immunity. A Huurre M Kalliomaki S Rautava M Rinne S Salminen E Isolauri, Neonatology 2007 93 236 240 10.1073/pnas.0504978102 18025796
15. Obesity alters gut microbial ecology. RE Ley F Backhed P Turnbaugh CA Lozupone RD Knight JI Gordon, Proc Natl Acad Sci USA 2005 102 11070 11075 10.1073/pnas.0605374104 16033867
16. Mechanisms underlying the resistance to diet-induced obesity in germ-free mice. F Backhed JK Manchester CF Semenkovich JI Gordon, Proc Natl Acad Sci USA 2007 104 979 984 10.1073/pnas.0812600106 17210919
17. Human gut microbiota in obesity and after gastric bypass. H Zhang JK Dibaise A Zuccolo D Kudrna M Braidotti Y Yu P Parameswaran MD Crowell R Wing BE Rittmann, et al. Proc Natl Acad Sci USA 2009 106 2365 2370 10.1016/S0140- 6736(03)12489-0 19164560
18. Gut flora in health and disease. F Guarner JR Malagelada, Lancet 2003 361 512 519 10.1097/QCO.0b013e3282a56a99 12583961
19. The normal intestinal microbiota. J Marchesi F Shanahan, Curr Opin Infect Dis 2007 20 508 513 10.1136/gut.2005.073817 17762785
20. Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. C Manichanh L Rigottier-Gois E Bonnaud K Gloux E Pelletier L Frangeul R Nalin C Jarrin P Chardon P Marteau, et al. Gut 2006 55 205 211 10.1016/S1383-5742(00)00003-X 16188921
21. Evaluation of fecal mutagenicity and colorectal cancer risk. TMCM DeKok JMS van Maanen, Mutation Res 2000 463 53 101 10.1016/S1383-5742(00)00003-X 10838209
22. Cellular toxicity of faecal water depends on diet. J Rafter SM Chin AM Andersson R Alder W Eng R Bruce, Am J Clin Nutr 1987 45 559 563 3030089
23. Shift from a dairy product-rich to a dairy product-free diet: influence on cytotoxicity and genotoxicity of fecal water - potential risk factors for colon cancer. B Glinghammer M Venturi IR Rowland J Rafter, Am J Clin Nutr 1997 66 1277 1282 9356548
24. Fecal water as a non-invasive biomarker in nutritional intervention: comparison of preparation methods and refinement of different endpoints. A Klinder PC Karlsson Y Clune R Hughes M Glei JJ Rafter I Rowland JK Collins BL Pool-Zobel, Nutr Cancer 2007 57 158 167 10.1385/MB:26:3:249 17571949
25. The comet assay for DNA damage and repair: principles, applications, and limitations. AR Collins, Mol Biotechnol 2004 26 249 261 10.1207/s15327914nc4902- 5 15004294
26. Fecal water genotoxicity is predictive of tumor-preventive activities by inulin-like oligofructoses, probiotics (Lactobacillus rhamnosus and Bifidobacterium lactis), and their synbiotic combination. A Klinder A Forster G Caderni AP Femia BL Pool-Zobel, Nutr Cancer 2004 49 144 155 10.1093/carcin/20. 12.2311 15489207
27. Diets high in fat and meat, but low in fiber increase the genotoxic potential of fecal water. MA Rieger A Parlesak BL Pool-Zobel G Rechkemmer C Bode, Carcinogenesis 1999 20 2317 2326 10.1079/BJN20041108 10590226
28. Dietary intervention with the probiotics Lactobacillus acidophilus 145 and Bifidobacterium longum 913 modulates the potential of human faecal water to induce damage in HT29clone19A cells. DL Oberreuther-Moschner G Jahreis G Rechkemmer BL Pool-Zobel, Br J Nutr 2004 91 925 932 10.1080/13547500500138963 15182396
29. Assessment of DNA damage and its modulation by dietary and genetic factors in smokers using the Comet assay: a biomarker model. M Glei N Habermann K Osswald C Seidel C Persin G Jahreis BL Pool-Zobel, Biomarkers 2005 10 203 217 10.1093/aje/154.12.1089 16076733
30. Comparative validation of the Block, Willett, and National Cancer Institute food frequency questionnaires: the Eating at America's Table Study. AF Subar FE Thompson V Kipnis D Midthune P Hurwitz S McNutt A McIntosh S Rosenfeld, Am J Epidemiol 2001 154 1089 1099 10.1158/1055-9965.EPI-270-2 11744511
31. Relative validity of a food frequency questionnaire with a meat-cooking and heterocyclic amine module. M Cantwell B Mittl J Curtin R Carroll N Potischman N Caporaso R Sinha, Cancer Epidemiol Biomarkers Prev 2004 13 293 298 10.1158/1055-9965.EPI-270-2 14973110
32. Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. EG Zoetendal AD Akkermans WM De Vos, Appl Environ Microbiol 1998 64 3854 3859 9758810
33. Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. AH Franks HJ Harmsen GC Raangs GJ Jansen F Schut GW Welling, Appl Environ Microbiol 1998 64 3336 3345 10.1128/AEM.66.10.4523-4527. 2000 9726880
34. Development of 16S rRNA-based probes for the Coriobacterium group and the Atopobium cluster and their application for enumeration of Coriobacteriaceae in human feces from volunteers of different age groups. HJ Harmsen AC Wildeboer-Veloo J Grijpstra J Knol JE Degener GW Welling, Appl Environ Microbiol 2000 66 4523 4527 10.1128/AEM.68.6.2982-2990.2002 11010909
35. Extensive set of 16S rRNA-based probes for detection of bacteria in human feces. HJ Harmsen GC Raangs T He JE Degener GW Welling, Appl Environ Microbiol 2002 68 2982 2990 10.1099/13500872-142-5-1097 12039758
36. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment. W Manz R Amann W Ludwig M Vancanneyt KH Schleifer, Microbiology 1996 142 1097 1106 10.1099/13500872-142-5-1097 8704951
37. Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples. PS Langendijk F Schut GJ Jansen GC Raangs GR Kamphuis MH Wilkinson GW Welling, Appl Environ Microbiol 1995 61 3069 3075 10.1080/089106099435862 7487040
38. A 16S rRNA-targeted probe for detection of Lactobacilli and Enterococci in faecal samples by fluorescent in situ hybridization. HJM Harmsen P Elferich F Schut GW Welling, Microbial Ecology in Health and Disease 1999 11 3 12 10.1111/j.1365-2672.2004.02409.x
39. Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR. T Rinttila A Kassinen E Malinen L Krogius A Palva, J Appl Microbiol 2004 97 1166 1177 10.1016/S0300-9084(86)80177-8 15546407
40. The human colon carcinoma cell lines HT-29 and Caco-2: two in vitro models for the study of intestinal differentiation. M Rousset, Biochimie 1986 68 1035 1040 10.1016/0014-4827(88)90265-0 3096381
41. A simple technique for quantitation of low levels of DNA damage in individual cells. NP Singh MT McCoy RR Tice EL Schneider, Exp Cell Res 1988 175 184 191 10.1207/s15327914nc5602-9 3345800
42. Bread enriched with green coffee extract has chemoprotective and antigenotoxic activities in human cells. M Glei A Kirmse N Habermann C Persin BL Pool-Zobel, Nutr Cancer 2006 56 182 192 10.1016/j.annepidem.2007.12.002 17474864
43. Vitamin D and cancer incidence in the Harvard cohorts. E Giovannucci, Ann Epidemiol 2009 19 84 88 10.1002/1097-0142(197107)28:1<3::AID- CNCR2820280104>3.0.CO;2-N 18291673
44. Epidemiology of cancer of the colon and rectum. DP Burkitt, Cancer 1971 28 3 13 10.1002/1097-0142(197107)28:1<3::AID-CNCR2820280104>3.0.CO;2-N 5165022
45. Effects of a controlled diet and black tea drinking on the fecal microflora composition and the fecal bile acid profile of human volunteers in a double-blinded randomized feeding study. V Mai HA Katki H Harmsen D Gallaher A Schatzkin DJ Baer B Clevidence, J Nutr 2004 134 473 478 10.1371/journal.pbio. 0060280 14747691
46. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. L Dethlefsen S Huse ML Sogin DA Relman, PLoS Biol 2008 6 280 10.1002/mc.20233 19018661
47. Intestinal microbiota: a potential diet-responsive prevention target in ApcMin mice. V Mai LH Colbert SN Perkins A Schatzkin SD Hursting, Mol Carcinog 2007 46 42 48 10.1073/pnas.0407076101 16929480
48. The gut microbiota as an environmental factor that regulates fat storage. F Backhed H Ding T Wang LV Hooper GY Koh A Nagy CF Semenkovich JI Gordon, Proc Natl Acad Sci USA 2004 101 15718 15723 10.1038/nature05414 15505215
49. An obesity-associated gut microbiome with increased capacity for energy harvest. PJ Turnbaugh RE Ley MA Mahowald V Magrini ER Mardis JI Gordon, Nature 2006 444 1027 1031 10.1038/4441022a 17183312
50. Microbial ecology: human gut microbes associated with obesity. RE Ley PJ Turnbaugh S Klein JI Gordon, Nature 2006 444 1022 1023 10.1038/ijo.2008.155 17183309
51. Human colonic microbiota associated with diet, obesity and weight loss. SH Duncan GE Lobley G Holtrop J Ince AM Johnstone P Louis HJ Flint, Int J Obes (Lond) 2008 32 1720 1724 10.1038/ijo.2008.155 18779823