메뉴 건너뛰기




Volumn 15, Issue 1, 2015, Pages

Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae

Author keywords

Algae; Chlorophyll synthesis; Endosymbiotic gene transfer; Gene duplication; Horizontal gene transfer; Protochlorophyllide

Indexed keywords

ALGA; ANCESTRY; ANGIOSPERM; CHLOROPHYLL; CYANOBACTERIUM; DIATOM; DINOFLAGELLATE; ENDOSYMBIONT; ENZYME ACTIVITY; GENE TRANSFER; PHYLOGENETICS; PLASTID; RECONSTRUCTION; GENOME;

EID: 84923884692     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/s12862-015-0286-4     Document Type: Article
Times cited : (46)

References (125)
  • 1
    • 84859439404 scopus 로고    scopus 로고
    • Chlorophyll synthesis
    • Wise RR, Hoober JK, editors Dordrecht: Springer
    • Willows RD. Chlorophyll synthesis. In: Wise RR, Hoober JK, editors. The structure and function of plastids. Dordrecht: Springer; 2006. p. 295-313.
    • (2006) The Structure and Function of Plastids , pp. 295-313
    • Willows, R.D.1
  • 2
    • 0032524680 scopus 로고    scopus 로고
    • Greening in the dark: Light-independent chlorophyll biosynthesis from anoxygenic photosynthetic bacteria to gymnosperms
    • Armstrong G. Greening in the dark: light-independent chlorophyll biosynthesis from anoxygenic photosynthetic bacteria to gymnosperms. J Photochem Photobiol B Biol. 1998;43:87-100.
    • (1998) J Photochem Photobiol B Biol , vol.43 , pp. 87-100
    • Armstrong, G.1
  • 3
    • 0029065496 scopus 로고
    • A prokaryotic origin for light-dependent chlorophyll biosynthesis of plants
    • Suzuki J, Bauer C. A prokaryotic origin for light-dependent chlorophyll biosynthesis of plants. Proc Natl Acad Sci U S A. 1995;92:3749-53.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 3749-3753
    • Suzuki, J.1    Bauer, C.2
  • 4
    • 84940920463 scopus 로고    scopus 로고
    • The light-dependent protochlorophyllide reductase: A nitrogenase-like enzyme catalyzing a key reaction for greening in the dark
    • Kadish K, Smith K, Guilard R, editors. San Diego: Elsevier Science
    • Fujita Y, Bauer CE. The light-dependent protochlorophyllide reductase: a nitrogenase-like enzyme catalyzing a key reaction for greening in the dark. In: Kadish K, Smith K, Guilard R, editors. The porphyrin handbook. vol. 13. San Diego: Elsevier Science; 2003. p. 109-56.
    • (2003) The Porphyrin Handbook , vol.13 , pp. 109-156
    • Fujita, Y.1    Bauer, C.E.2
  • 5
    • 77952090871 scopus 로고    scopus 로고
    • X-ray crystal structure of the light-independent protochlorophyllide reductase
    • Muraki N, Nomata J, Ebata K, Mizoguchi T, Shiba T, Tamiaki H, et al. X-ray crystal structure of the light-independent protochlorophyllide reductase. Nature. 2010;465:110-4.
    • (2010) Nature , vol.465 , pp. 110-114
    • Muraki, N.1    Nomata, J.2    Ebata, K.3    Mizoguchi, T.4    Shiba, T.5    Tamiaki, H.6
  • 6
    • 0034604647 scopus 로고    scopus 로고
    • Reconstitution of light-independent protochlorophyllide reductase from purified BchL and BchN-BchB subunits: In vitro confirmation of nitrogenase-like features of a bacteriochlorophyll biosynthesis enzyme
    • Fujita Y, Bauer CE. Reconstitution of light-independent protochlorophyllide reductase from purified BchL and BchN-BchB subunits: in vitro confirmation of nitrogenase-like features of a bacteriochlorophyll biosynthesis enzyme. J Biol Chem. 2000;275:23583-8.
    • (2000) J Biol Chem , vol.275 , pp. 23583-23588
    • Fujita, Y.1    Bauer, C.E.2
  • 7
    • 33750522524 scopus 로고    scopus 로고
    • Nitrogenase Fe protein-like Fe-S cluster is conserved in L-protein (BchL) of dark-operative protochlorophyllide reductase from Rhodobacter capsulatus
    • Nomata J, Kitashima M, Inoue K, Fujita Y. Nitrogenase Fe protein-like Fe-S cluster is conserved in L-protein (BchL) of dark-operative protochlorophyllide reductase from Rhodobacter capsulatus. FEBS Lett. 2006;580:6151-4.
    • (2006) FEBS Lett , vol.580 , pp. 6151-6154
    • Nomata, J.1    Kitashima, M.2    Inoue, K.3    Fujita, Y.4
  • 8
    • 33751079088 scopus 로고    scopus 로고
    • Differential operation of dual protochlorophyllide reductases for chlorophyll biosynthesis in response to environmental oxygen levels in the cyanobacterium Leptolyngbya boryana
    • Yamazaki S, Nomata J, Fujita Y. Differential operation of dual protochlorophyllide reductases for chlorophyll biosynthesis in response to environmental oxygen levels in the cyanobacterium Leptolyngbya boryana. Plant Physiol. 2006;142:911-22.
    • (2006) Plant Physiol , vol.142 , pp. 911-922
    • Yamazaki, S.1    Nomata, J.2    Fujita, Y.3
  • 9
    • 70349908427 scopus 로고    scopus 로고
    • Oxygen sensitivity of a nitrogenase-like protochlorophyllide reductase from the cyanobacterium Leptolyngbya boryana
    • Yamamoto H, Kurumiya S, Ohashi R, Fujita Y. Oxygen sensitivity of a nitrogenase-like protochlorophyllide reductase from the cyanobacterium Leptolyngbya boryana. Plant Cell Physiol. 2009;50:1663-73.
    • (2009) Plant Cell Physiol , vol.50 , pp. 1663-1673
    • Yamamoto, H.1    Kurumiya, S.2    Ohashi, R.3    Fujita, Y.4
  • 11
    • 0030572675 scopus 로고    scopus 로고
    • Evolution of chlorophyll biosynthesis - The challenge to survive photooxidation
    • Reinbothe S, Reinbothe C, Apel K, Lebedev N. Evolution of chlorophyll biosynthesis - the challenge to survive photooxidation. Cell. 1996;86:703-5.
    • (1996) Cell , vol.86 , pp. 703-705
    • Reinbothe, S.1    Reinbothe, C.2    Apel, K.3    Lebedev, N.4
  • 12
    • 0030566829 scopus 로고    scopus 로고
    • The light intensity dependence of protochlorophyllide photoconversion and its significance to the catalytic mechanism of protochlorophyllide reductase
    • Griffiths WT, McHugh T, Blankenship RE. The light intensity dependence of protochlorophyllide photoconversion and its significance to the catalytic mechanism of protochlorophyllide reductase. FEBS Lett. 1996;398:235-8.
    • (1996) FEBS Lett , vol.398 , pp. 235-238
    • Griffiths, W.T.1    McHugh, T.2    Blankenship, R.E.3
  • 15
    • 0030984331 scopus 로고    scopus 로고
    • The origin of red algae: Implications for plastid evolution
    • Stiller JW, Hall BD. The origin of red algae: implications for plastid evolution. Proc Natl Acad Sci U S A. 1997;94:4520-5.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 4520-4525
    • Stiller, J.W.1    Hall, B.D.2
  • 16
    • 0034986210 scopus 로고    scopus 로고
    • Are red algae plants? A critical evaluation of three key molecular data sets
    • Stiller JW, Riley J, Hall BD. Are red algae plants? A critical evaluation of three key molecular data sets. J Mol Evol. 2001;52:527-39.
    • (2001) J Mol Evol , vol.52 , pp. 527-539
    • Stiller, J.W.1    Riley, J.2    Hall, B.D.3
  • 17
    • 33845891330 scopus 로고    scopus 로고
    • The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: Evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts
    • Rogers MB, Gilson PR, Su V, McFadden GI, Keeling PJ. The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts. Mol Biol Evol. 2007;24:54-62.
    • (2007) Mol Biol Evol , vol.24 , pp. 54-62
    • Rogers, M.B.1    Gilson, P.R.2    Su, V.3    McFadden, G.I.4    Keeling, P.J.5
  • 18
    • 77953749915 scopus 로고    scopus 로고
    • Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles
    • Baurain D, Brinkmann H, Petersen J, Rodríguez-Ezpeleta N, Stechmann A, Demoulin V, et al. Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles. Mol Biol Evol. 2010;27:1698-709.
    • (2010) Mol Biol Evol , vol.27 , pp. 1698-1709
    • Baurain, D.1    Brinkmann, H.2    Petersen, J.3    Rodríguez-Ezpeleta, N.4    Stechmann, A.5    Demoulin, V.6
  • 20
    • 23944527127 scopus 로고    scopus 로고
    • Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages
    • Bachvaroff TR, Sanchez Puerta MV, Delwiche CF. Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages. Mol Biol Evol. 2005;22:1772-82.
    • (2005) Mol Biol Evol , vol.22 , pp. 1772-1782
    • Bachvaroff, T.R.1    Sanchez Puerta, M.V.2    Delwiche, C.F.3
  • 21
    • 34547781748 scopus 로고    scopus 로고
    • Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: Lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny
    • Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, et al. Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Mol Biol Evol. 2007;24:1832-42.
    • (2007) Mol Biol Evol , vol.24 , pp. 1832-1842
    • Khan, H.1    Parks, N.2    Kozera, C.3    Curtis, B.A.4    Parsons, B.J.5    Bowman, S.6
  • 22
    • 34447271967 scopus 로고    scopus 로고
    • Sorting wheat from chaff in multi-gene analyses of chlorophyll c-containing plastids
    • Sanchez-Puerta MV, Bachvaroff TR, Delwiche CF. Sorting wheat from chaff in multi-gene analyses of chlorophyll c-containing plastids. Mol Phylogenet Evol. 2007;44:885-97.
    • (2007) Mol Phylogenet Evol , vol.44 , pp. 885-897
    • Sanchez-Puerta, M.V.1    Bachvaroff, T.R.2    Delwiche, C.F.3
  • 23
    • 20644433743 scopus 로고    scopus 로고
    • Do plastid-related characters support the chromalveolate hypothesis?
    • Bodył A. Do plastid-related characters support the chromalveolate hypothesis?J Phycol. 2005;41:712-9.
    • (2005) J Phycol , vol.41 , pp. 712-719
    • Bodył, A.1
  • 24
    • 48049100248 scopus 로고    scopus 로고
    • A hypothesis for plastid evolution in chromalveolates
    • Sanchez-Puerta MV, Delwiche CF. A hypothesis for plastid evolution in chromalveolates. J Phycol. 2008;44:1097-107.
    • (2008) J Phycol , vol.44 , pp. 1097-1107
    • Sanchez-Puerta, M.V.1    Delwiche, C.F.2
  • 25
    • 60949088852 scopus 로고    scopus 로고
    • Chromalveolate plastids: Direct descent or multiple endosymbioses?
    • author reply 121-2
    • Bodył A, Stiller JW, Mackiewicz P. Chromalveolate plastids: direct descent or multiple endosymbioses? Trends Ecol Evol. 2009;24:119-21. author reply 121-2.
    • (2009) Trends Ecol Evol , vol.24 , pp. 119-121
    • Bodył, A.1    Stiller, J.W.2    Mackiewicz, P.3
  • 26
    • 84902970129 scopus 로고    scopus 로고
    • Chromera velia, endosymbioses and the rhodoplex hypothesis-plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages)
    • Petersen J, Ludewig A-K, Michael V, Bunk B, Jarek M, Baurain D, et al. Chromera velia, endosymbioses and the rhodoplex hypothesis-plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages). Genome Biol Evol. 2014;6:666-84.
    • (2014) Genome Biol Evol , vol.6 , pp. 666-684
    • Petersen, J.1    Ludewig, A.-K.2    Michael, V.3    Bunk, B.4    Jarek, M.5    Baurain, D.6
  • 27
    • 0037126071 scopus 로고    scopus 로고
    • Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
    • Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, et al. Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci U S A. 2002;99:12246-51.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 12246-12251
    • Martin, W.1    Rujan, T.2    Richly, E.3    Hansen, A.4    Cornelsen, S.5    Lins, T.6
  • 29
    • 0032404453 scopus 로고    scopus 로고
    • You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
    • Doolittle WF. You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet. 1998;14:307-11.
    • (1998) Trends Genet , vol.14 , pp. 307-311
    • Doolittle, W.F.1
  • 30
    • 0037458117 scopus 로고    scopus 로고
    • Gene transfer: Gene swapping craze reaches eukaryotes
    • Gogarten JP. Gene transfer: gene swapping craze reaches eukaryotes. Curr Biol. 2003;13:R53-4.
    • (2003) Curr Biol , vol.13 , pp. R53-R54
    • Gogarten, J.P.1
  • 31
    • 33646881141 scopus 로고    scopus 로고
    • "Green" phosphoribulokinase in complex algae with red plastids: Evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates
    • Petersen J, Teich R, Brinkmann H, Cerff R. A "green" phosphoribulokinase in complex algae with red plastids: evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates. J Mol Evol. 2006;62:143-57.
    • (2006) J Mol Evol , vol.62 , pp. 143-157
    • Petersen, J.1    Teich, R.2    Brinkmann, H.3    Cerff, R.A.4
  • 32
    • 33745323234 scopus 로고    scopus 로고
    • Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra
    • Waller RF, Patron NJ, Keeling PJ. Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra. Int J Syst Evol Microbiol. 2006;56:1439-47.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1439-1447
    • Waller, R.F.1    Patron, N.J.2    Keeling, P.J.3
  • 34
    • 84862894116 scopus 로고    scopus 로고
    • Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms
    • Allen AE, Moustafa A, Montsant A, Eckert A, Kroth PG, Bowler C. Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms. Mol Biol Evol. 2012;29:367-79.
    • (2012) Mol Biol Evol , vol.29 , pp. 367-379
    • Allen, A.E.1    Moustafa, A.2    Montsant, A.3    Eckert, A.4    Kroth, P.G.5    Bowler, C.6
  • 36
    • 0038714278 scopus 로고    scopus 로고
    • Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastidcontaining alga Bigelowiella natans
    • Archibald JM, Rogers MB, Toop M, Ishida K-I, Keeling PJ. Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastidcontaining alga Bigelowiella natans. Proc Natl Acad Sci U S A. 2003;100:7678-83.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 7678-7683
    • Archibald, J.M.1    Rogers, M.B.2    Toop, M.3    Ishida, K.-I.4    Keeling, P.J.5
  • 37
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • Jain R, Rivera MC, Lake JA. Horizontal gene transfer among genomes: the complexity hypothesis. Proc Natl Acad Sci U S A. 1999;96:3801-6.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 38
    • 79952840493 scopus 로고    scopus 로고
    • The complexity hypothesis revisited: Connectivity rather than function constitutes a barrier to horizontal gene transfer
    • Cohen O, Gophna U, Pupko T. The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer. Mol Biol Evol. 2011;28:1481-9.
    • (2011) Mol Biol Evol , vol.28 , pp. 1481-1489
    • Cohen, O.1    Gophna, U.2    Pupko, T.3
  • 40
    • 84864112797 scopus 로고    scopus 로고
    • High expression hampers horizontal gene transfer
    • Park C, Zhang J. High expression hampers horizontal gene transfer. Genome Biol Evol. 2012;4:523-32.
    • (2012) Genome Biol Evol , vol.4 , pp. 523-532
    • Park, C.1    Zhang, J.2
  • 41
    • 0037500141 scopus 로고    scopus 로고
    • Evolution by gene duplication: An update
    • Zhang J. Evolution by gene duplication: an update. Trends Ecol Evol. 2003;18:292-8.
    • (2003) Trends Ecol Evol , vol.18 , pp. 292-298
    • Zhang, J.1
  • 42
    • 70449591297 scopus 로고    scopus 로고
    • An integrated analysis of molecular acclimation to high light in the marine diatom Phaeodactylum tricornutum
    • Nymark M, Valle KC, Brembu T, Hancke K, Winge P, Andresen K, et al. An integrated analysis of molecular acclimation to high light in the marine diatom Phaeodactylum tricornutum. PLoS One. 2009;4:e7743.
    • (2009) PLoS One , vol.4 , pp. e7743
    • Nymark, M.1    Valle, K.C.2    Brembu, T.3    Hancke, K.4    Winge, P.5    Andresen, K.6
  • 43
    • 84874765332 scopus 로고    scopus 로고
    • Molecular and photosynthetic responses to prolonged darkness and subsequent acclimation to re-illumination in the diatom Phaeodactylum tricornutum
    • Nymark M, Valle KC, Hancke K, Winge P, Andresen K, Johnsen G, et al. Molecular and photosynthetic responses to prolonged darkness and subsequent acclimation to re-illumination in the diatom Phaeodactylum tricornutum. PLoS One. 2013;8:e58722.
    • (2013) PLoS One , vol.8 , pp. e58722
    • Nymark, M.1    Valle, K.C.2    Hancke, K.3    Winge, P.4    Andresen, K.5    Johnsen, G.6
  • 45
    • 77954449776 scopus 로고    scopus 로고
    • Analyses of the complete chloroplast genome sequences of two members of the Pelagophyceae: Aureococcus anophagefferens CCMP1984 amd Aureumbra lagunensis CCMP1507
    • Ong H, Wilhelm S, Gobler C, Bullerjahn G, Jacobs MA, McKay J, et al. Analyses of the complete chloroplast genome sequences of two members of the Pelagophyceae: Aureococcus anophagefferens CCMP1984 amd Aureumbra lagunensis CCMP1507. J Phycol. 2010;46:602-15.
    • (2010) J Phycol , vol.46 , pp. 602-615
    • Ong, H.1    Wilhelm, S.2    Gobler, C.3    Bullerjahn, G.4    Jacobs, M.A.5    McKay, J.6
  • 46
    • 40949123144 scopus 로고    scopus 로고
    • Evolutionary dynamics of light-independent protochlorophyllide oxidoreductase genes in the secondary plastids of cryptophyte algae
    • Fong A, Archibald JM. Evolutionary dynamics of light-independent protochlorophyllide oxidoreductase genes in the secondary plastids of cryptophyte algae. Eukaryot Cell. 2008;7:550-3.
    • (2008) Eukaryot Cell , vol.7 , pp. 550-553
    • Fong, A.1    Archibald, J.M.2
  • 47
    • 3242883632 scopus 로고    scopus 로고
    • Novel insights into the enzymology, regulation and physiological functions of light-dependent protochlorophyllide oxidoreductase in angiosperms
    • Masuda T, Takamiya K-I. Novel insights into the enzymology, regulation and physiological functions of light-dependent protochlorophyllide oxidoreductase in angiosperms. Photosynth Res. 2004;81:1-29.
    • (2004) Photosynth Res , vol.81 , pp. 1-29
    • Masuda, T.1    Takamiya, K.-I.2
  • 48
    • 58149133711 scopus 로고    scopus 로고
    • The SDR superfamily: Functional and structural diversity within a family of metabolic and regulatory enzymes
    • Kavanagh KL, Jörnvall H, Persson B, Oppermann U. The SDR superfamily: functional and structural diversity within a family of metabolic and regulatory enzymes. Cell Mol Life Sci. 2008;65:3895-906.
    • (2008) Cell Mol Life Sci , vol.65 , pp. 3895-3906
    • Kavanagh, K.L.1    Jörnvall, H.2    Persson, B.3    Oppermann, U.4
  • 49
    • 0028895568 scopus 로고
    • A light-dependent complementation system for analysis of NADPH:Protochlorophyllide oxidoreductase: Identification and mutagenesis of two conserved residues that are essential for enzyme activity
    • Wilks HM, Timko MP. A light-dependent complementation system for analysis of NADPH:protochlorophyllide oxidoreductase: identification and mutagenesis of two conserved residues that are essential for enzyme activity. Proc Natl Acad Sci U S A. 1995;92:724-8.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 724-728
    • Wilks, H.M.1    Timko, M.P.2
  • 50
    • 0035940442 scopus 로고    scopus 로고
    • Tyr275 and Lys279 stabilize NADPH within the catalytic site of NADPH:Protochlorophyllide oxidoreductase and are involved in the formation of the enzyme photoactive state
    • Lebedev N, Karginova O, McIvor W, Timko MP. Tyr275 and Lys279 stabilize NADPH within the catalytic site of NADPH:protochlorophyllide oxidoreductase and are involved in the formation of the enzyme photoactive state. Biochemistry. 2001;40:12562-74.
    • (2001) Biochemistry , vol.40 , pp. 12562-12574
    • Lebedev, N.1    Karginova, O.2    McIvor, W.3    Timko, M.P.4
  • 51
    • 0036670732 scopus 로고    scopus 로고
    • Site-directed mutagenesis of Tyr-189 and Lys-193 in NADPH: Protochlorophyllide oxidoreductase from Synechocystis
    • Heyes DJ, Hunter CN. Site-directed mutagenesis of Tyr-189 and Lys-193 in NADPH: protochlorophyllide oxidoreductase from Synechocystis. Biochem Soc Trans. 2002;30:601-4.
    • (2002) Biochem Soc Trans , vol.30 , pp. 601-604
    • Heyes, D.J.1    Hunter, C.N.2
  • 52
    • 67650538081 scopus 로고    scopus 로고
    • Cryogenic and laser photoexcitation studies identify multiple roles for active site residues in the light-driven enzyme protochlorophyllide oxidoreductase
    • Menon BRK, Waltho JP, Scrutton NS, Heyes DJ. Cryogenic and laser photoexcitation studies identify multiple roles for active site residues in the light-driven enzyme protochlorophyllide oxidoreductase. J Biol Chem. 2009;284:18160-6.
    • (2009) J Biol Chem , vol.284 , pp. 18160-18166
    • Menon, B.R.K.1    Waltho, J.P.2    Scrutton, N.S.3    Heyes, D.J.4
  • 53
    • 76249103676 scopus 로고    scopus 로고
    • Mutagenesis alters the catalytic mechanism of the light-driven enzyme protochlorophyllide oxidoreductase
    • Menon BRK, Davison PA, Hunter CN, Scrutton NS, Heyes DJ. Mutagenesis alters the catalytic mechanism of the light-driven enzyme protochlorophyllide oxidoreductase. J Biol Chem. 2010;285:2113-9.
    • (2010) J Biol Chem , vol.285 , pp. 2113-2119
    • Menon, B.R.K.1    Davison, P.A.2    Hunter, C.N.3    Scrutton, N.S.4    Heyes, D.J.5
  • 54
    • 84876530503 scopus 로고    scopus 로고
    • Chlorophyll biosynthesis gene evolution indicates photosystem gene duplication, not photosystem merger, at the origin of oxygenic photosynthesis
    • Sousa FL, Shavit-Grievink L, Allen JF, Martin WF. Chlorophyll biosynthesis gene evolution indicates photosystem gene duplication, not photosystem merger, at the origin of oxygenic photosynthesis. Genome Biol Evol. 2013;5:200-16.
    • (2013) Genome Biol Evol , vol.5 , pp. 200-216
    • Sousa, F.L.1    Shavit-Grievink, L.2    Allen, J.F.3    Martin, W.F.4
  • 55
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • Whelan S, Goldman N. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol. 2001;18:691-9.
    • (2001) Mol Biol Evol , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 56
    • 27944503381 scopus 로고    scopus 로고
    • A plastid in the making: Evidence for a second primary endosymbiosis
    • Marin B, Nowack ECM, Melkonian M. A plastid in the making: evidence for a second primary endosymbiosis. Protist. 2005;156:425-32.
    • (2005) Protist , vol.156 , pp. 425-432
    • Marin, B.1    Nowack, E.C.M.2    Melkonian, M.3
  • 57
    • 84857242898 scopus 로고    scopus 로고
    • Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants
    • Price DC, Chan CX, Yoon HS, Yang EC, Qiu H, Weber APM, et al. Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science. 2012;335:843-7.
    • (2012) Science , vol.335 , pp. 843-847
    • Price, D.C.1    Chan, C.X.2    Yoon, H.S.3    Yang, E.C.4    Qiu, H.5    Weber, A.P.M.6
  • 58
    • 84906934333 scopus 로고    scopus 로고
    • Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria
    • Kaschner M, Loeschcke A, Krause J, Minh BQ, Heck A, Endres S, et al. Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria. Mol Microbiol. 2014;93:1066-78.
    • (2014) Mol Microbiol , vol.93 , pp. 1066-1078
    • Kaschner, M.1    Loeschcke, A.2    Krause, J.3    Minh, B.Q.4    Heck, A.5    Endres, S.6
  • 59
    • 33748041084 scopus 로고    scopus 로고
    • Heterotachy processes in rhodophyte-derived secondhand plastid genes: Implications for addressing the origin and evolution of dinoflagellate plastids
    • Shalchian-Tabrizi K, Skånseng M, Ronquist F, Klaveness D, Bachvaroff TR, Delwiche CF, et al. Heterotachy processes in rhodophyte-derived secondhand plastid genes: implications for addressing the origin and evolution of dinoflagellate plastids. Mol Biol Evol. 2006;23:1504-15.
    • (2006) Mol Biol Evol , vol.23 , pp. 1504-1515
    • Shalchian-Tabrizi, K.1    Skånseng, M.2    Ronquist, F.3    Klaveness, D.4    Bachvaroff, T.R.5    Delwiche, C.F.6
  • 60
    • 84856216492 scopus 로고    scopus 로고
    • Supermatrix data highlight the phylogenetic relationships of photosynthetic stramenopiles
    • Yang EC, Boo GH, Kim HJ, Cho SM, Boo SM, Andersen RA, et al. Supermatrix data highlight the phylogenetic relationships of photosynthetic stramenopiles. Protist. 2012;163:217-31.
    • (2012) Protist , vol.163 , pp. 217-231
    • Yang, E.C.1    Boo, G.H.2    Kim, H.J.3    Cho, S.M.4    Boo, S.M.5    Andersen, R.A.6
  • 61
    • 84903286893 scopus 로고    scopus 로고
    • The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
    • Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, et al. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PLoS Biol. 2014;12:e1001889.
    • (2014) PLoS Biol , vol.12 , pp. e1001889
    • Keeling, P.J.1    Burki, F.2    Wilcox, H.M.3    Allam, B.4    Allen, E.E.5    Amaral-Zettler, L.A.6
  • 62
    • 84867231487 scopus 로고    scopus 로고
    • Analysis of Alexandrium tamarense (Dinophyceae) genes reveals the complex evolutionary history of a microbial eukaryote
    • Chan CX, Soares MB, Bonaldo MF, Wisecaver JH, Hackett JD, Anderson DM, et al. Analysis of Alexandrium tamarense (Dinophyceae) genes reveals the complex evolutionary history of a microbial eukaryote. J Phycol. 2012;48:1130-42.
    • (2012) J Phycol , vol.48 , pp. 1130-1142
    • Chan, C.X.1    Soares, M.B.2    Bonaldo, M.F.3    Wisecaver, J.H.4    Hackett, J.D.5    Anderson, D.M.6
  • 63
    • 84892490680 scopus 로고    scopus 로고
    • Horizontal gene transfer is a significant driver of gene innovation in dinoflagellates
    • Wisecaver JH, Brosnahan ML, Hackett JD. Horizontal gene transfer is a significant driver of gene innovation in dinoflagellates. Genome Biol Evol. 2013;5:2368-81.
    • (2013) Genome Biol Evol , vol.5 , pp. 2368-2381
    • Wisecaver, J.H.1    Brosnahan, M.L.2    Hackett, J.D.3
  • 64
    • 84902990659 scopus 로고    scopus 로고
    • Horizontal gene transfer and redundancy of tryptophan biosynthetic enzymes in dinotoms
    • Imanian B, Keeling PJ. Horizontal gene transfer and redundancy of tryptophan biosynthetic enzymes in dinotoms. Genome Biol Evol. 2014;6:333-43.
    • (2014) Genome Biol Evol , vol.6 , pp. 333-343
    • Imanian, B.1    Keeling, P.J.2
  • 65
    • 84903388897 scopus 로고    scopus 로고
    • Phylogenomic analysis of "red" genes from two divergent species of the " green " secondary phototrophs, the chlorarachniophytes, suggests multiple horizontal gene transfers from the red lineage before the divergence of extant chlorarachniophytes
    • Yang Y, Matsuzaki M, Takahashi F, Qu L, Nozaki H. Phylogenomic analysis of "red" genes from two divergent species of the " green " secondary phototrophs, the chlorarachniophytes, suggests multiple horizontal gene transfers from the red lineage before the divergence of extant chlorarachniophytes. PLoS One. 2014;9:e101158.
    • (2014) PLoS One , vol.9 , pp. e101158
    • Yang, Y.1    Matsuzaki, M.2    Takahashi, F.3    Qu, L.4    Nozaki, H.5
  • 66
    • 84870564943 scopus 로고    scopus 로고
    • Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
    • Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, et al. Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature. 2012;492:59-65.
    • (2012) Nature , vol.492 , pp. 59-65
    • Curtis, B.A.1    Tanifuji, G.2    Burki, F.3    Gruber, A.4    Irimia, M.5    Maruyama, S.6
  • 67
    • 0036264845 scopus 로고    scopus 로고
    • The Pinguiophyceae classis nova, a new class of photosynthetic stramenopiles whose members produce large amounts of omega-3 fatty acids
    • Kawachi M, Inouye I, Honda D, Kelly CJO, Bailey JC, Bidigare RR, et al. The Pinguiophyceae classis nova, a new class of photosynthetic stramenopiles whose members produce large amounts of omega-3 fatty acids. Phycol Res. 2002;50:31-47.
    • (2002) Phycol Res , vol.50 , pp. 31-47
    • Kawachi, M.1    Inouye, I.2    Honda, D.3    Kelly, C.J.O.4    Bailey, J.C.5    Bidigare, R.R.6
  • 68
    • 84905502466 scopus 로고    scopus 로고
    • Why some clades have low bootstrap frequencies and high Bayesian posterior probabilities
    • García-Sandoval R. Why some clades have low bootstrap frequencies and high Bayesian posterior probabilities. Isr J Ecol Evol. 2014;60:41-4.
    • (2014) Isr J Ecol Evol , vol.60 , pp. 41-44
    • García-Sandoval, R.1
  • 69
    • 56449118832 scopus 로고    scopus 로고
    • Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis
    • Frommolt R, Werner S, Paulsen H, Goss R, Wilhelm C, Zauner S, et al. Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis. Mol Biol Evol. 2008;25:2653-67.
    • (2008) Mol Biol Evol , vol.25 , pp. 2653-2667
    • Frommolt, R.1    Werner, S.2    Paulsen, H.3    Goss, R.4    Wilhelm, C.5    Zauner, S.6
  • 71
    • 84857232993 scopus 로고    scopus 로고
    • Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia
    • Woehle C, Dagan T, Martin WF, Gould SB. Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia. Genome Biol Evol. 2011;3:1220-30.
    • (2011) Genome Biol Evol , vol.3 , pp. 1220-1230
    • Woehle, C.1    Dagan, T.2    Martin, W.F.3    Gould, S.B.4
  • 73
    • 84865853707 scopus 로고    scopus 로고
    • Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin
    • Burki F, Flegontov P, Oborník M, Cihlár J, Pain A, Lukes J, et al. Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin. Genome Biol Evol. 2012;4:626-35.
    • (2012) Genome Biol Evol , vol.4 , pp. 626-635
    • Burki, F.1    Flegontov, P.2    Oborník, M.3    Cihlár, J.4    Pain, A.5    Lukes, J.6
  • 74
    • 84866394866 scopus 로고    scopus 로고
    • Reevaluating the green contribution to diatom genomes
    • Deschamps P, Moreira D. Reevaluating the green contribution to diatom genomes. Genome Biol Evol. 2012;4:683-8.
    • (2012) Genome Biol Evol , vol.4 , pp. 683-688
    • Deschamps, P.1    Moreira, D.2
  • 75
    • 72649101641 scopus 로고    scopus 로고
    • A time line of the environmental genetics of the haptophytes
    • Liu H, Aris-Brosou S, Probert I, de Vargas C. A time line of the environmental genetics of the haptophytes. Mol Biol Evol. 2010;27:161-76.
    • (2010) Mol Biol Evol , vol.27 , pp. 161-176
    • Liu, H.1    Aris-Brosou, S.2    Probert, I.3    De Vargas, C.4
  • 76
    • 84985292673 scopus 로고
    • The cryptomonad nucleomorph: Its ultrastructure and evolutionary significance
    • Gillott M, Gibbs S. The cryptomonad nucleomorph: its ultrastructure and evolutionary significance. J Phycol. 1980;16:558-68.
    • (1980) J Phycol , vol.16 , pp. 558-568
    • Gillott, M.1    Gibbs, S.2
  • 77
    • 43049085945 scopus 로고    scopus 로고
    • The eukaryotic tree of life: Endosymbiosis takes its TOL
    • Lane CE, Archibald JM. The eukaryotic tree of life: endosymbiosis takes its TOL. Trends Ecol Evol. 2008;23:268-75.
    • (2008) Trends Ecol Evol , vol.23 , pp. 268-275
    • Lane, C.E.1    Archibald, J.M.2
  • 78
    • 79551514620 scopus 로고    scopus 로고
    • After the primary endosymbiosis: An update on the chromalveolate hypothesis and the origins of algae with Chl c
    • Green BR. After the primary endosymbiosis: an update on the chromalveolate hypothesis and the origins of algae with Chl c. Photosynth Res. 2011;107:103-15.
    • (2011) Photosynth Res , vol.107 , pp. 103-115
    • Green, B.R.1
  • 79
    • 84923371638 scopus 로고    scopus 로고
    • The evolution of photosynthesis in chromist algae through serial endosymbioses
    • Stiller JW, Schreiber J, Yue J, Guo H, Ding Q, Huang J. The evolution of photosynthesis in chromist algae through serial endosymbioses. Nat Commun. 2014;5:5764.
    • (2014) Nat Commun , vol.5 , pp. 5764
    • Stiller, J.W.1    Schreiber, J.2    Yue, J.3    Guo, H.4    Ding, Q.5    Huang, J.6
  • 80
    • 70449135018 scopus 로고    scopus 로고
    • Plastid genomes of two brown algae. Ectocarpus siliculosus and Fucus vesiculosus: Further insights on the evolution of red-algal derived plastids
    • Le Corguillé G, Pearson G, Valente M, Viegas C, Gschloessl B, Corre E, et al. Plastid genomes of two brown algae. Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids. BMC Evol Biol. 2009;9:253.
    • (2009) BMC Evol Biol , vol.9 , pp. 253
    • Le Corguillé, G.1    Pearson, G.2    Valente, M.3    Viegas, C.4    Gschloessl, B.5    Corre, E.6
  • 82
    • 33748895571 scopus 로고    scopus 로고
    • An exceptional horizontal gene transfer in plastids: Gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters
    • Rice DW, Palmer JD. An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters. BMC Biol. 2006;4:31.
    • (2006) BMC Biol , vol.4 , pp. 31
    • Rice, D.W.1    Palmer, J.D.2
  • 83
    • 84904271391 scopus 로고    scopus 로고
    • The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles
    • Hovde BT, Starkenburg SR, Hunsperger HM, Mercer LD, Deodato CR, Jha RK, et al. The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles. BMC Genomics. 2014;15:604.
    • (2014) BMC Genomics , vol.15 , pp. 604
    • Hovde, B.T.1    Starkenburg, S.R.2    Hunsperger, H.M.3    Mercer, L.D.4    Deodato, C.R.5    Jha, R.K.6
  • 84
    • 0001755036 scopus 로고    scopus 로고
    • Phylogenetic relationships of the "golden algae" (haptophytes, heterokont chromophytes) and their plastids
    • Medlin L, Kooistra W, Potter D, Saunders G, Andersen R. Phylogenetic relationships of the "golden algae" (haptophytes, heterokont chromophytes) and their plastids. Plant Syst Evol. 1997;11:187-219.
    • (1997) Plant Syst Evol , vol.11 , pp. 187-219
    • Medlin, L.1    Kooistra, W.2    Potter, D.3    Saunders, G.4    Andersen, R.5
  • 86
    • 33750618212 scopus 로고    scopus 로고
    • A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record
    • Berney C, Pawlowski J. A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record. Proc Biol Sci. 2006;273:1867-72.
    • (2006) Proc Biol Sci , vol.273 , pp. 1867-1872
    • Berney, C.1    Pawlowski, J.2
  • 87
    • 38349143165 scopus 로고    scopus 로고
    • Photoactive pigment- enzyme complexes of chlorophyll precursor in plant leaves
    • Belyaeva OB, Litvin FF. Photoactive pigment- enzyme complexes of chlorophyll precursor in plant leaves. Biochem. 2007;72:1458-77.
    • (2007) Biochem , vol.72 , pp. 1458-1477
    • Belyaeva, O.B.1    Litvin, F.F.2
  • 88
    • 79952453090 scopus 로고    scopus 로고
    • Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin
    • Matsumoto T, Shinozaki F, Chikuni T, Yabuki A, Takishita K, Kawachi M, et al. Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin. Protist. 2011;162:268-76.
    • (2011) Protist , vol.162 , pp. 268-276
    • Matsumoto, T.1    Shinozaki, F.2    Chikuni, T.3    Yabuki, A.4    Takishita, K.5    Kawachi, M.6
  • 89
    • 77953236552 scopus 로고    scopus 로고
    • Transcriptome analysis reveals nuclear-encoded proteins for the maintenance of temporary plastids in the dinoflagellate Dinophysis acuminata
    • Wisecaver JH, Hackett JD. Transcriptome analysis reveals nuclear-encoded proteins for the maintenance of temporary plastids in the dinoflagellate Dinophysis acuminata. BMC Genomics. 2010;11:366.
    • (2010) BMC Genomics , vol.11 , pp. 366
    • Wisecaver, J.H.1    Hackett, J.D.2
  • 91
    • 33645100385 scopus 로고    scopus 로고
    • A tertiary plastid uses genes from two endosymbionts
    • Patron NJ, Waller RF, Keeling PJ. A tertiary plastid uses genes from two endosymbionts. J Mol Biol. 2006;357:1373-82.
    • (2006) J Mol Biol , vol.357 , pp. 1373-1382
    • Patron, N.J.1    Waller, R.F.2    Keeling, P.J.3
  • 92
    • 0037015024 scopus 로고    scopus 로고
    • A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis
    • Yoon HS, Hackett JD, Bhattacharya D. A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis. Proc Natl Acad Sci U S A. 2002;99:11724-9.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 11724-11729
    • Yoon, H.S.1    Hackett, J.D.2    Bhattacharya, D.3
  • 93
    • 36849080234 scopus 로고    scopus 로고
    • Origins of the secondary plastids of Euglenophyta and Chlorarachniophyta as revealed by an analysis of the plastid-targeting, nuclear-encoded gene psbO 1
    • Takahashi F, Okabe Y, Nakada T, Sekimoto H, Ito M, Kataoka H, et al. Origins of the secondary plastids of Euglenophyta and Chlorarachniophyta as revealed by an analysis of the plastid-targeting, nuclear-encoded gene psbO 1. J Phycol. 2007;43:1302-9.
    • (2007) J Phycol , vol.43 , pp. 1302-1309
    • Takahashi, F.1    Okabe, Y.2    Nakada, T.3    Sekimoto, H.4    Ito, M.5    Kataoka, H.6
  • 94
    • 60149094050 scopus 로고    scopus 로고
    • The chloroplast genomes of the green algae Pyramimonas, Monomastix, and Pycnococcus shed new light on the evolutionary history of prasinophytes and the origin of the secondary chloroplasts of euglenids
    • Turmel M, Gagnon M-C, O'Kelly CJ, Otis C, Lemieux C. The chloroplast genomes of the green algae Pyramimonas, Monomastix, and Pycnococcus shed new light on the evolutionary history of prasinophytes and the origin of the secondary chloroplasts of euglenids. Mol Biol Evol. 2009;26:631-48.
    • (2009) Mol Biol Evol , vol.26 , pp. 631-648
    • Turmel, M.1    Gagnon, M.-C.2    O'Kelly, C.J.3    Otis, C.4    Lemieux, C.5
  • 95
    • 82555171612 scopus 로고    scopus 로고
    • Lotharella reticulosa sp. Nov.: A highly reticulated network forming chlorarachniophyte from the Mediterranean Sea
    • Ota S, Vaulot D. Lotharella reticulosa sp. nov.: a highly reticulated network forming chlorarachniophyte from the Mediterranean Sea. Protist. 2012;163:91-104.
    • (2012) Protist , vol.163 , pp. 91-104
    • Ota, S.1    Vaulot, D.2
  • 96
    • 0030613319 scopus 로고    scopus 로고
    • Acclimation of photosynthesis to irradiance and spectral quality in British plant species: Chlorophyll content, photosynthetic capacity and habitat preference
    • Murchie EH, Horton P. Acclimation of photosynthesis to irradiance and spectral quality in British plant species: chlorophyll content, photosynthetic capacity and habitat preference. Plant Cell Environ. 1997;20:438-48.
    • (1997) Plant Cell Environ , vol.20 , pp. 438-448
    • Murchie, E.H.1    Horton, P.2
  • 97
    • 0030617742 scopus 로고    scopus 로고
    • Dynamic model of phytoplankton growth and acclimation: Responses of the balanced growth rate and the chlorophyll a:Carbon ratio to light, nutrient-limitation and temperature
    • Geider R, MacIntyre H, Kana T. Dynamic model of phytoplankton growth and acclimation: responses of the balanced growth rate and the chlorophyll a:carbon ratio to light, nutrient-limitation and temperature. Mar Ecol Prog Ser. 1997;148:187-200.
    • (1997) Mar Ecol Prog Ser , vol.148 , pp. 187-200
    • Geider, R.1    MacIntyre, H.2    Kana, T.3
  • 98
    • 0347131383 scopus 로고    scopus 로고
    • Protochlorophyllide reduction: Mechanisms and evolution
    • Schoefs B, Franck F. Protochlorophyllide reduction: mechanisms and evolution. Photochem Photobiol. 2003;78:543-57.
    • (2003) Photochem Photobiol , vol.78 , pp. 543-557
    • Schoefs, B.1    Franck, F.2
  • 99
    • 0032006920 scopus 로고    scopus 로고
    • Cloning of the gene encoding a protochlorophyllide reductase: The physiological significance of the co-existence of light-dependent and -independent protochlorophyllide reduction systems in the cyanobacterium Plectonema boryanum
    • Fujita Y, Takagi H, Hase T. Cloning of the gene encoding a protochlorophyllide reductase: the physiological significance of the co-existence of light-dependent and -independent protochlorophyllide reduction systems in the cyanobacterium Plectonema boryanum. Plant Cell Physiol. 1998;39:177-85.
    • (1998) Plant Cell Physiol , vol.39 , pp. 177-185
    • Fujita, Y.1    Takagi, H.2    Hase, T.3
  • 100
    • 41449089777 scopus 로고    scopus 로고
    • NB-protein (BchN-BchB) of dark-operative protochlorophyllide reductase is the catalytic component containing oxygen-tolerant Fe-S clusters
    • Nomata J, Ogawa T, Kitashima M, Inoue K, Fujita Y. NB-protein (BchN-BchB) of dark-operative protochlorophyllide reductase is the catalytic component containing oxygen-tolerant Fe-S clusters. FEBS Lett. 2008;582:1346-50.
    • (2008) FEBS Lett , vol.582 , pp. 1346-1350
    • Nomata, J.1    Ogawa, T.2    Kitashima, M.3    Inoue, K.4    Fujita, Y.5
  • 101
    • 77956241157 scopus 로고    scopus 로고
    • Crystal structure of the nitrogenase-like dark operative protochlorophyllide oxidoreductase catalytic complex (ChlN/ChlB)2
    • Bröcker MJ, Schomburg S, Heinz DW, Jahn D, Schubert W-D, Moser J. Crystal structure of the nitrogenase-like dark operative protochlorophyllide oxidoreductase catalytic complex (ChlN/ChlB)2. J Biol Chem. 2010;285:27336-45.
    • (2010) J Biol Chem , vol.285 , pp. 27336-27345
    • Bröcker, M.J.1    Schomburg, S.2    Heinz, D.W.3    Jahn, D.4    Schubert, W.-D.5    Moser, J.6
  • 102
  • 103
    • 77957294748 scopus 로고    scopus 로고
    • Oceanographic and biogeochemical insights from diatom genomes
    • Bowler C, Vardi A, Allen AE. Oceanographic and biogeochemical insights from diatom genomes. Ann Rev Mar Sci. 2010;2:333-65.
    • (2010) Ann Rev Mar Sci , vol.2 , pp. 333-365
    • Bowler, C.1    Vardi, A.2    Allen, A.E.3
  • 104
    • 0001074120 scopus 로고
    • Iron-induced changes in light harvesting and photochemical energy conversion processes in eukaryotic marine algae
    • Greene RM, Geider RJ, Kolber Z, Falkowski PG. Iron-induced changes in light harvesting and photochemical energy conversion processes in eukaryotic marine algae. Plant Physiol. 1992;100:565-75.
    • (1992) Plant Physiol , vol.100 , pp. 565-575
    • Greene, R.M.1    Geider, R.J.2    Kolber, Z.3    Falkowski, P.G.4
  • 105
    • 0027137525 scopus 로고
    • Induction of specific proteins in eukaryotic algae grown under iron-, phosphorus-, or nitrogen-deficient conditions
    • La Roche J, Geider RJ, Graziano LM, Murray H, Lewis K. Induction of specific proteins in eukaryotic algae grown under iron-, phosphorus-, or nitrogen-deficient conditions. J Phycol. 1993;29:767-77.
    • (1993) J Phycol , vol.29 , pp. 767-777
    • La Roche, J.1    Geider, R.J.2    Graziano, L.M.3    Murray, H.4    Lewis, K.5
  • 106
    • 0001028792 scopus 로고
    • Flavodoxin expression as an indicator of iron limitation in marine diatoms
    • La Roche J, Murray H, Orellana M, Newton J. Flavodoxin expression as an indicator of iron limitation in marine diatoms. J Phycol. 1995;31:520-30.
    • (1995) J Phycol , vol.31 , pp. 520-530
    • La Roche, J.1    Murray, H.2    Orellana, M.3    Newton, J.4
  • 107
    • 27544442817 scopus 로고    scopus 로고
    • Making light work of enzyme catalysis: Protochlorophyllide oxidoreductase
    • Heyes DJ, Hunter CN. Making light work of enzyme catalysis: protochlorophyllide oxidoreductase. Trends Biochem Sci. 2005;30:642-9.
    • (2005) Trends Biochem Sci , vol.30 , pp. 642-649
    • Heyes, D.J.1    Hunter, C.N.2
  • 108
    • 0008555965 scopus 로고
    • The isolation and spectral absorption properties of protochlorophyll from etiolated barley seedlings
    • Koski VM, Smith JHC. The isolation and spectral absorption properties of protochlorophyll from etiolated barley seedlings. J Am Chem Soc. 1948;70:3558-62.
    • (1948) J Am Chem Soc , vol.70 , pp. 3558-3562
    • Koski, V.M.1    Smith, J.H.C.2
  • 109
    • 84861635551 scopus 로고    scopus 로고
    • Catalytic efficiency of a photoenzyme - An adaptation to natural light conditions
    • Hanf R, Fey S, Schmitt M, Hermann G, Dietzek B, Popp J. Catalytic efficiency of a photoenzyme - an adaptation to natural light conditions. ChemPhysChem. 2012;13:2013-5.
    • (2012) ChemPhysChem , vol.13 , pp. 2013-2015
    • Hanf, R.1    Fey, S.2    Schmitt, M.3    Hermann, G.4    Dietzek, B.5    Popp, J.6
  • 110
    • 84881178651 scopus 로고    scopus 로고
    • Comment on "Catalytic efficiency of a photoenzyme-an adaptation to natural light conditions" by J Popp et al
    • author reply 2598-2600
    • Björn LO. Comment on "Catalytic efficiency of a photoenzyme-an adaptation to natural light conditions" by J Popp et al. Chemphyschem. 2013;14:2595-7. author reply 2598-2600.
    • (2013) Chemphyschem , vol.14 , pp. 2595-2597
    • Björn, L.O.1
  • 111
    • 0036233453 scopus 로고    scopus 로고
    • Heterosigma akashiwo (Raphidophyceae) resting cell formation in batch culture: Strain identity versus physiological response
    • Han M, Kim Y, Cattolico RA. Heterosigma akashiwo (Raphidophyceae) resting cell formation in batch culture: strain identity versus physiological response. J Phycol. 2002;317:304-17.
    • (2002) J Phycol , vol.317 , pp. 304-317
    • Han, M.1    Kim, Y.2    Cattolico, R.A.3
  • 112
    • 84885060768 scopus 로고    scopus 로고
    • Behavioral and physiological changes during benthic-pelagic transition in the harmful alga, Heterosigma akashiwo: Potential for rapid bloom formation
    • Tobin ED, Grünbaum D, Patterson J, Cattolico RA. Behavioral and physiological changes during benthic-pelagic transition in the harmful alga, Heterosigma akashiwo: potential for rapid bloom formation. PLoS One. 2013;8:e76663.
    • (2013) PLoS One , vol.8 , pp. e76663
    • Tobin, E.D.1    Grünbaum, D.2    Patterson, J.3    Cattolico, R.A.4
  • 114
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge C, Karlin S. Prediction of complete gene structures in human genomic DNA. J Mol Biol. 1997;268:78-94.
    • (1997) J Mol Biol , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 115
    • 0035002015 scopus 로고    scopus 로고
    • Computational inference of homologous gene structures in the human genome
    • Yeh R-F, Lim LP, Burge CB. Computational inference of homologous gene structures in the human genome. Genome Res. 2001;11:803-16.
    • (2001) Genome Res , vol.11 , pp. 803-816
    • Yeh, R.-F.1    Lim, L.P.2    Burge, C.B.3
  • 117
    • 0030056704 scopus 로고    scopus 로고
    • Secondary structure of NADPH: Protochlorophyllide oxidoreductase examined by circular dichroism and prediction methods
    • Birve S, Selstam E, Johansson B. Secondary structure of NADPH: protochlorophyllide oxidoreductase examined by circular dichroism and prediction methods. Biochem J. 1996;317:549-55.
    • (1996) Biochem J , vol.317 , pp. 549-555
    • Birve, S.1    Selstam, E.2    Johansson, B.3
  • 118
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32:1792-7.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 119
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • Abascal F, Zardoya R, Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics. 2005;21:2104-5.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 121
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006;22:2688-90.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 122
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 2003;19:1572-4.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 123
    • 84923924924 scopus 로고    scopus 로고
    • Tracer http://tree.bio.ed.ac.uk/software/tracer/
    • Tracer
  • 124
    • 84923871096 scopus 로고    scopus 로고
    • FigTree http://tree.bio.ed.ac.uk/software/figtree/
    • FigTree
  • 125
    • 84923884692 scopus 로고    scopus 로고
    • Data from: Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae
    • Hunsperger HM, Randhawa T, Cattolico RA. Data from: extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae. BMC Evol Biol 2015.
    • (2015) BMC Evol Biol
    • Hunsperger, H.M.1    Randhawa, T.2    Cattolico, R.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.