-
1
-
-
84859439404
-
Chlorophyll synthesis
-
Wise RR, Hoober JK, editors Dordrecht: Springer
-
Willows RD. Chlorophyll synthesis. In: Wise RR, Hoober JK, editors. The structure and function of plastids. Dordrecht: Springer; 2006. p. 295-313.
-
(2006)
The Structure and Function of Plastids
, pp. 295-313
-
-
Willows, R.D.1
-
2
-
-
0032524680
-
Greening in the dark: Light-independent chlorophyll biosynthesis from anoxygenic photosynthetic bacteria to gymnosperms
-
Armstrong G. Greening in the dark: light-independent chlorophyll biosynthesis from anoxygenic photosynthetic bacteria to gymnosperms. J Photochem Photobiol B Biol. 1998;43:87-100.
-
(1998)
J Photochem Photobiol B Biol
, vol.43
, pp. 87-100
-
-
Armstrong, G.1
-
3
-
-
0029065496
-
A prokaryotic origin for light-dependent chlorophyll biosynthesis of plants
-
Suzuki J, Bauer C. A prokaryotic origin for light-dependent chlorophyll biosynthesis of plants. Proc Natl Acad Sci U S A. 1995;92:3749-53.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 3749-3753
-
-
Suzuki, J.1
Bauer, C.2
-
4
-
-
84940920463
-
The light-dependent protochlorophyllide reductase: A nitrogenase-like enzyme catalyzing a key reaction for greening in the dark
-
Kadish K, Smith K, Guilard R, editors. San Diego: Elsevier Science
-
Fujita Y, Bauer CE. The light-dependent protochlorophyllide reductase: a nitrogenase-like enzyme catalyzing a key reaction for greening in the dark. In: Kadish K, Smith K, Guilard R, editors. The porphyrin handbook. vol. 13. San Diego: Elsevier Science; 2003. p. 109-56.
-
(2003)
The Porphyrin Handbook
, vol.13
, pp. 109-156
-
-
Fujita, Y.1
Bauer, C.E.2
-
5
-
-
77952090871
-
X-ray crystal structure of the light-independent protochlorophyllide reductase
-
Muraki N, Nomata J, Ebata K, Mizoguchi T, Shiba T, Tamiaki H, et al. X-ray crystal structure of the light-independent protochlorophyllide reductase. Nature. 2010;465:110-4.
-
(2010)
Nature
, vol.465
, pp. 110-114
-
-
Muraki, N.1
Nomata, J.2
Ebata, K.3
Mizoguchi, T.4
Shiba, T.5
Tamiaki, H.6
-
6
-
-
0034604647
-
Reconstitution of light-independent protochlorophyllide reductase from purified BchL and BchN-BchB subunits: In vitro confirmation of nitrogenase-like features of a bacteriochlorophyll biosynthesis enzyme
-
Fujita Y, Bauer CE. Reconstitution of light-independent protochlorophyllide reductase from purified BchL and BchN-BchB subunits: in vitro confirmation of nitrogenase-like features of a bacteriochlorophyll biosynthesis enzyme. J Biol Chem. 2000;275:23583-8.
-
(2000)
J Biol Chem
, vol.275
, pp. 23583-23588
-
-
Fujita, Y.1
Bauer, C.E.2
-
7
-
-
33750522524
-
Nitrogenase Fe protein-like Fe-S cluster is conserved in L-protein (BchL) of dark-operative protochlorophyllide reductase from Rhodobacter capsulatus
-
Nomata J, Kitashima M, Inoue K, Fujita Y. Nitrogenase Fe protein-like Fe-S cluster is conserved in L-protein (BchL) of dark-operative protochlorophyllide reductase from Rhodobacter capsulatus. FEBS Lett. 2006;580:6151-4.
-
(2006)
FEBS Lett
, vol.580
, pp. 6151-6154
-
-
Nomata, J.1
Kitashima, M.2
Inoue, K.3
Fujita, Y.4
-
8
-
-
33751079088
-
Differential operation of dual protochlorophyllide reductases for chlorophyll biosynthesis in response to environmental oxygen levels in the cyanobacterium Leptolyngbya boryana
-
Yamazaki S, Nomata J, Fujita Y. Differential operation of dual protochlorophyllide reductases for chlorophyll biosynthesis in response to environmental oxygen levels in the cyanobacterium Leptolyngbya boryana. Plant Physiol. 2006;142:911-22.
-
(2006)
Plant Physiol
, vol.142
, pp. 911-922
-
-
Yamazaki, S.1
Nomata, J.2
Fujita, Y.3
-
9
-
-
70349908427
-
Oxygen sensitivity of a nitrogenase-like protochlorophyllide reductase from the cyanobacterium Leptolyngbya boryana
-
Yamamoto H, Kurumiya S, Ohashi R, Fujita Y. Oxygen sensitivity of a nitrogenase-like protochlorophyllide reductase from the cyanobacterium Leptolyngbya boryana. Plant Cell Physiol. 2009;50:1663-73.
-
(2009)
Plant Cell Physiol
, vol.50
, pp. 1663-1673
-
-
Yamamoto, H.1
Kurumiya, S.2
Ohashi, R.3
Fujita, Y.4
-
11
-
-
0030572675
-
Evolution of chlorophyll biosynthesis - The challenge to survive photooxidation
-
Reinbothe S, Reinbothe C, Apel K, Lebedev N. Evolution of chlorophyll biosynthesis - the challenge to survive photooxidation. Cell. 1996;86:703-5.
-
(1996)
Cell
, vol.86
, pp. 703-705
-
-
Reinbothe, S.1
Reinbothe, C.2
Apel, K.3
Lebedev, N.4
-
12
-
-
0030566829
-
The light intensity dependence of protochlorophyllide photoconversion and its significance to the catalytic mechanism of protochlorophyllide reductase
-
Griffiths WT, McHugh T, Blankenship RE. The light intensity dependence of protochlorophyllide photoconversion and its significance to the catalytic mechanism of protochlorophyllide reductase. FEBS Lett. 1996;398:235-8.
-
(1996)
FEBS Lett
, vol.398
, pp. 235-238
-
-
Griffiths, W.T.1
McHugh, T.2
Blankenship, R.E.3
-
14
-
-
22744445156
-
Monophyly of primary photosynthetic eukaryotes: Green plants, red algae, and glaucophytes
-
Rodríguez-Ezpeleta N, Brinkmann H, Burey SC, Roure B, Burger G, Löffelhardt W, et al. Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes. Curr Biol. 2005;15:1325-30.
-
(2005)
Curr Biol
, vol.15
, pp. 1325-1330
-
-
Rodríguez-Ezpeleta, N.1
Brinkmann, H.2
Burey, S.C.3
Roure, B.4
Burger, G.5
Löffelhardt, W.6
-
15
-
-
0030984331
-
The origin of red algae: Implications for plastid evolution
-
Stiller JW, Hall BD. The origin of red algae: implications for plastid evolution. Proc Natl Acad Sci U S A. 1997;94:4520-5.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 4520-4525
-
-
Stiller, J.W.1
Hall, B.D.2
-
16
-
-
0034986210
-
Are red algae plants? A critical evaluation of three key molecular data sets
-
Stiller JW, Riley J, Hall BD. Are red algae plants? A critical evaluation of three key molecular data sets. J Mol Evol. 2001;52:527-39.
-
(2001)
J Mol Evol
, vol.52
, pp. 527-539
-
-
Stiller, J.W.1
Riley, J.2
Hall, B.D.3
-
17
-
-
33845891330
-
The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: Evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts
-
Rogers MB, Gilson PR, Su V, McFadden GI, Keeling PJ. The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts. Mol Biol Evol. 2007;24:54-62.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 54-62
-
-
Rogers, M.B.1
Gilson, P.R.2
Su, V.3
McFadden, G.I.4
Keeling, P.J.5
-
18
-
-
77953749915
-
Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles
-
Baurain D, Brinkmann H, Petersen J, Rodríguez-Ezpeleta N, Stechmann A, Demoulin V, et al. Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles. Mol Biol Evol. 2010;27:1698-709.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1698-1709
-
-
Baurain, D.1
Brinkmann, H.2
Petersen, J.3
Rodríguez-Ezpeleta, N.4
Stechmann, A.5
Demoulin, V.6
-
19
-
-
0037180558
-
The single, ancient origin of chromist plastids
-
Yoon HS, Hackett JD, Pinto G, Bhattacharya D. The single, ancient origin of chromist plastids. Proc Natl Acad Sci U S A. 2002;99:15507-12.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 15507-15512
-
-
Yoon, H.S.1
Hackett, J.D.2
Pinto, G.3
Bhattacharya, D.4
-
20
-
-
23944527127
-
Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages
-
Bachvaroff TR, Sanchez Puerta MV, Delwiche CF. Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages. Mol Biol Evol. 2005;22:1772-82.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1772-1782
-
-
Bachvaroff, T.R.1
Sanchez Puerta, M.V.2
Delwiche, C.F.3
-
21
-
-
34547781748
-
Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: Lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny
-
Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, et al. Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Mol Biol Evol. 2007;24:1832-42.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1832-1842
-
-
Khan, H.1
Parks, N.2
Kozera, C.3
Curtis, B.A.4
Parsons, B.J.5
Bowman, S.6
-
22
-
-
34447271967
-
Sorting wheat from chaff in multi-gene analyses of chlorophyll c-containing plastids
-
Sanchez-Puerta MV, Bachvaroff TR, Delwiche CF. Sorting wheat from chaff in multi-gene analyses of chlorophyll c-containing plastids. Mol Phylogenet Evol. 2007;44:885-97.
-
(2007)
Mol Phylogenet Evol
, vol.44
, pp. 885-897
-
-
Sanchez-Puerta, M.V.1
Bachvaroff, T.R.2
Delwiche, C.F.3
-
23
-
-
20644433743
-
Do plastid-related characters support the chromalveolate hypothesis?
-
Bodył A. Do plastid-related characters support the chromalveolate hypothesis?J Phycol. 2005;41:712-9.
-
(2005)
J Phycol
, vol.41
, pp. 712-719
-
-
Bodył, A.1
-
24
-
-
48049100248
-
A hypothesis for plastid evolution in chromalveolates
-
Sanchez-Puerta MV, Delwiche CF. A hypothesis for plastid evolution in chromalveolates. J Phycol. 2008;44:1097-107.
-
(2008)
J Phycol
, vol.44
, pp. 1097-1107
-
-
Sanchez-Puerta, M.V.1
Delwiche, C.F.2
-
25
-
-
60949088852
-
Chromalveolate plastids: Direct descent or multiple endosymbioses?
-
author reply 121-2
-
Bodył A, Stiller JW, Mackiewicz P. Chromalveolate plastids: direct descent or multiple endosymbioses? Trends Ecol Evol. 2009;24:119-21. author reply 121-2.
-
(2009)
Trends Ecol Evol
, vol.24
, pp. 119-121
-
-
Bodył, A.1
Stiller, J.W.2
Mackiewicz, P.3
-
26
-
-
84902970129
-
Chromera velia, endosymbioses and the rhodoplex hypothesis-plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages)
-
Petersen J, Ludewig A-K, Michael V, Bunk B, Jarek M, Baurain D, et al. Chromera velia, endosymbioses and the rhodoplex hypothesis-plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages). Genome Biol Evol. 2014;6:666-84.
-
(2014)
Genome Biol Evol
, vol.6
, pp. 666-684
-
-
Petersen, J.1
Ludewig, A.-K.2
Michael, V.3
Bunk, B.4
Jarek, M.5
Baurain, D.6
-
27
-
-
0037126071
-
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
-
Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, et al. Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci U S A. 2002;99:12246-51.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 12246-12251
-
-
Martin, W.1
Rujan, T.2
Richly, E.3
Hansen, A.4
Cornelsen, S.5
Lins, T.6
-
28
-
-
0037471694
-
How big is the iceberg of which organellar genes in nuclear genomes are but the tip?
-
Doolittle WF, Boucher Y, Nesbø CL, Douady CJ, Andersson JO, Roger AJ. How big is the iceberg of which organellar genes in nuclear genomes are but the tip? Philos Trans R Soc Lond B Biol Sci. 2003;358:39-58.
-
(2003)
Philos Trans R Soc Lond B Biol Sci
, vol.358
, pp. 39-58
-
-
Doolittle, W.F.1
Boucher, Y.2
Nesbø, C.L.3
Douady, C.J.4
Andersson, J.O.5
Roger, A.J.6
-
29
-
-
0032404453
-
You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
-
Doolittle WF. You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet. 1998;14:307-11.
-
(1998)
Trends Genet
, vol.14
, pp. 307-311
-
-
Doolittle, W.F.1
-
30
-
-
0037458117
-
Gene transfer: Gene swapping craze reaches eukaryotes
-
Gogarten JP. Gene transfer: gene swapping craze reaches eukaryotes. Curr Biol. 2003;13:R53-4.
-
(2003)
Curr Biol
, vol.13
, pp. R53-R54
-
-
Gogarten, J.P.1
-
31
-
-
33646881141
-
"Green" phosphoribulokinase in complex algae with red plastids: Evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates
-
Petersen J, Teich R, Brinkmann H, Cerff R. A "green" phosphoribulokinase in complex algae with red plastids: evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates. J Mol Evol. 2006;62:143-57.
-
(2006)
J Mol Evol
, vol.62
, pp. 143-157
-
-
Petersen, J.1
Teich, R.2
Brinkmann, H.3
Cerff, R.A.4
-
32
-
-
33745323234
-
Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra
-
Waller RF, Patron NJ, Keeling PJ. Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra. Int J Syst Evol Microbiol. 2006;56:1439-47.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 1439-1447
-
-
Waller, R.F.1
Patron, N.J.2
Keeling, P.J.3
-
33
-
-
34447509748
-
A complex and punctate distribution of three eukaryotic genes derived by lateral gene transfer
-
Rogers MB, Watkins RF, Harper JT, Durnford DG, Gray MW, Keeling PJ. A complex and punctate distribution of three eukaryotic genes derived by lateral gene transfer. BMC Evol Biol. 2007;7:89.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 89
-
-
Rogers, M.B.1
Watkins, R.F.2
Harper, J.T.3
Durnford, D.G.4
Gray, M.W.5
Keeling, P.J.6
-
34
-
-
84862894116
-
Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms
-
Allen AE, Moustafa A, Montsant A, Eckert A, Kroth PG, Bowler C. Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms. Mol Biol Evol. 2012;29:367-79.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 367-379
-
-
Allen, A.E.1
Moustafa, A.2
Montsant, A.3
Eckert, A.4
Kroth, P.G.5
Bowler, C.6
-
35
-
-
84888437974
-
Assessing the bacterial contribution to the plastid proteome
-
Qiu H, Price DC, Weber APM, Facchinelli F, Yoon HS, Bhattacharya D. Assessing the bacterial contribution to the plastid proteome. Trends Plant Sci. 2013;18:680-7.
-
(2013)
Trends Plant Sci
, vol.18
, pp. 680-687
-
-
Qiu, H.1
Price, D.C.2
Weber, A.P.M.3
Facchinelli, F.4
Yoon, H.S.5
Bhattacharya, D.6
-
36
-
-
0038714278
-
Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastidcontaining alga Bigelowiella natans
-
Archibald JM, Rogers MB, Toop M, Ishida K-I, Keeling PJ. Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastidcontaining alga Bigelowiella natans. Proc Natl Acad Sci U S A. 2003;100:7678-83.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 7678-7683
-
-
Archibald, J.M.1
Rogers, M.B.2
Toop, M.3
Ishida, K.-I.4
Keeling, P.J.5
-
37
-
-
0033616714
-
Horizontal gene transfer among genomes: The complexity hypothesis
-
Jain R, Rivera MC, Lake JA. Horizontal gene transfer among genomes: the complexity hypothesis. Proc Natl Acad Sci U S A. 1999;96:3801-6.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 3801-3806
-
-
Jain, R.1
Rivera, M.C.2
Lake, J.A.3
-
38
-
-
79952840493
-
The complexity hypothesis revisited: Connectivity rather than function constitutes a barrier to horizontal gene transfer
-
Cohen O, Gophna U, Pupko T. The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer. Mol Biol Evol. 2011;28:1481-9.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 1481-1489
-
-
Cohen, O.1
Gophna, U.2
Pupko, T.3
-
40
-
-
84864112797
-
High expression hampers horizontal gene transfer
-
Park C, Zhang J. High expression hampers horizontal gene transfer. Genome Biol Evol. 2012;4:523-32.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 523-532
-
-
Park, C.1
Zhang, J.2
-
41
-
-
0037500141
-
Evolution by gene duplication: An update
-
Zhang J. Evolution by gene duplication: an update. Trends Ecol Evol. 2003;18:292-8.
-
(2003)
Trends Ecol Evol
, vol.18
, pp. 292-298
-
-
Zhang, J.1
-
42
-
-
70449591297
-
An integrated analysis of molecular acclimation to high light in the marine diatom Phaeodactylum tricornutum
-
Nymark M, Valle KC, Brembu T, Hancke K, Winge P, Andresen K, et al. An integrated analysis of molecular acclimation to high light in the marine diatom Phaeodactylum tricornutum. PLoS One. 2009;4:e7743.
-
(2009)
PLoS One
, vol.4
, pp. e7743
-
-
Nymark, M.1
Valle, K.C.2
Brembu, T.3
Hancke, K.4
Winge, P.5
Andresen, K.6
-
43
-
-
84874765332
-
Molecular and photosynthetic responses to prolonged darkness and subsequent acclimation to re-illumination in the diatom Phaeodactylum tricornutum
-
Nymark M, Valle KC, Hancke K, Winge P, Andresen K, Johnsen G, et al. Molecular and photosynthetic responses to prolonged darkness and subsequent acclimation to re-illumination in the diatom Phaeodactylum tricornutum. PLoS One. 2013;8:e58722.
-
(2013)
PLoS One
, vol.8
, pp. e58722
-
-
Nymark, M.1
Valle, K.C.2
Hancke, K.3
Winge, P.4
Andresen, K.5
Johnsen, G.6
-
45
-
-
77954449776
-
Analyses of the complete chloroplast genome sequences of two members of the Pelagophyceae: Aureococcus anophagefferens CCMP1984 amd Aureumbra lagunensis CCMP1507
-
Ong H, Wilhelm S, Gobler C, Bullerjahn G, Jacobs MA, McKay J, et al. Analyses of the complete chloroplast genome sequences of two members of the Pelagophyceae: Aureococcus anophagefferens CCMP1984 amd Aureumbra lagunensis CCMP1507. J Phycol. 2010;46:602-15.
-
(2010)
J Phycol
, vol.46
, pp. 602-615
-
-
Ong, H.1
Wilhelm, S.2
Gobler, C.3
Bullerjahn, G.4
Jacobs, M.A.5
McKay, J.6
-
46
-
-
40949123144
-
Evolutionary dynamics of light-independent protochlorophyllide oxidoreductase genes in the secondary plastids of cryptophyte algae
-
Fong A, Archibald JM. Evolutionary dynamics of light-independent protochlorophyllide oxidoreductase genes in the secondary plastids of cryptophyte algae. Eukaryot Cell. 2008;7:550-3.
-
(2008)
Eukaryot Cell
, vol.7
, pp. 550-553
-
-
Fong, A.1
Archibald, J.M.2
-
47
-
-
3242883632
-
Novel insights into the enzymology, regulation and physiological functions of light-dependent protochlorophyllide oxidoreductase in angiosperms
-
Masuda T, Takamiya K-I. Novel insights into the enzymology, regulation and physiological functions of light-dependent protochlorophyllide oxidoreductase in angiosperms. Photosynth Res. 2004;81:1-29.
-
(2004)
Photosynth Res
, vol.81
, pp. 1-29
-
-
Masuda, T.1
Takamiya, K.-I.2
-
48
-
-
58149133711
-
The SDR superfamily: Functional and structural diversity within a family of metabolic and regulatory enzymes
-
Kavanagh KL, Jörnvall H, Persson B, Oppermann U. The SDR superfamily: functional and structural diversity within a family of metabolic and regulatory enzymes. Cell Mol Life Sci. 2008;65:3895-906.
-
(2008)
Cell Mol Life Sci
, vol.65
, pp. 3895-3906
-
-
Kavanagh, K.L.1
Jörnvall, H.2
Persson, B.3
Oppermann, U.4
-
49
-
-
0028895568
-
A light-dependent complementation system for analysis of NADPH:Protochlorophyllide oxidoreductase: Identification and mutagenesis of two conserved residues that are essential for enzyme activity
-
Wilks HM, Timko MP. A light-dependent complementation system for analysis of NADPH:protochlorophyllide oxidoreductase: identification and mutagenesis of two conserved residues that are essential for enzyme activity. Proc Natl Acad Sci U S A. 1995;92:724-8.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 724-728
-
-
Wilks, H.M.1
Timko, M.P.2
-
50
-
-
0035940442
-
Tyr275 and Lys279 stabilize NADPH within the catalytic site of NADPH:Protochlorophyllide oxidoreductase and are involved in the formation of the enzyme photoactive state
-
Lebedev N, Karginova O, McIvor W, Timko MP. Tyr275 and Lys279 stabilize NADPH within the catalytic site of NADPH:protochlorophyllide oxidoreductase and are involved in the formation of the enzyme photoactive state. Biochemistry. 2001;40:12562-74.
-
(2001)
Biochemistry
, vol.40
, pp. 12562-12574
-
-
Lebedev, N.1
Karginova, O.2
McIvor, W.3
Timko, M.P.4
-
51
-
-
0036670732
-
Site-directed mutagenesis of Tyr-189 and Lys-193 in NADPH: Protochlorophyllide oxidoreductase from Synechocystis
-
Heyes DJ, Hunter CN. Site-directed mutagenesis of Tyr-189 and Lys-193 in NADPH: protochlorophyllide oxidoreductase from Synechocystis. Biochem Soc Trans. 2002;30:601-4.
-
(2002)
Biochem Soc Trans
, vol.30
, pp. 601-604
-
-
Heyes, D.J.1
Hunter, C.N.2
-
52
-
-
67650538081
-
Cryogenic and laser photoexcitation studies identify multiple roles for active site residues in the light-driven enzyme protochlorophyllide oxidoreductase
-
Menon BRK, Waltho JP, Scrutton NS, Heyes DJ. Cryogenic and laser photoexcitation studies identify multiple roles for active site residues in the light-driven enzyme protochlorophyllide oxidoreductase. J Biol Chem. 2009;284:18160-6.
-
(2009)
J Biol Chem
, vol.284
, pp. 18160-18166
-
-
Menon, B.R.K.1
Waltho, J.P.2
Scrutton, N.S.3
Heyes, D.J.4
-
53
-
-
76249103676
-
Mutagenesis alters the catalytic mechanism of the light-driven enzyme protochlorophyllide oxidoreductase
-
Menon BRK, Davison PA, Hunter CN, Scrutton NS, Heyes DJ. Mutagenesis alters the catalytic mechanism of the light-driven enzyme protochlorophyllide oxidoreductase. J Biol Chem. 2010;285:2113-9.
-
(2010)
J Biol Chem
, vol.285
, pp. 2113-2119
-
-
Menon, B.R.K.1
Davison, P.A.2
Hunter, C.N.3
Scrutton, N.S.4
Heyes, D.J.5
-
54
-
-
84876530503
-
Chlorophyll biosynthesis gene evolution indicates photosystem gene duplication, not photosystem merger, at the origin of oxygenic photosynthesis
-
Sousa FL, Shavit-Grievink L, Allen JF, Martin WF. Chlorophyll biosynthesis gene evolution indicates photosystem gene duplication, not photosystem merger, at the origin of oxygenic photosynthesis. Genome Biol Evol. 2013;5:200-16.
-
(2013)
Genome Biol Evol
, vol.5
, pp. 200-216
-
-
Sousa, F.L.1
Shavit-Grievink, L.2
Allen, J.F.3
Martin, W.F.4
-
55
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
Whelan S, Goldman N. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol. 2001;18:691-9.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
56
-
-
27944503381
-
A plastid in the making: Evidence for a second primary endosymbiosis
-
Marin B, Nowack ECM, Melkonian M. A plastid in the making: evidence for a second primary endosymbiosis. Protist. 2005;156:425-32.
-
(2005)
Protist
, vol.156
, pp. 425-432
-
-
Marin, B.1
Nowack, E.C.M.2
Melkonian, M.3
-
57
-
-
84857242898
-
Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants
-
Price DC, Chan CX, Yoon HS, Yang EC, Qiu H, Weber APM, et al. Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science. 2012;335:843-7.
-
(2012)
Science
, vol.335
, pp. 843-847
-
-
Price, D.C.1
Chan, C.X.2
Yoon, H.S.3
Yang, E.C.4
Qiu, H.5
Weber, A.P.M.6
-
58
-
-
84906934333
-
Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria
-
Kaschner M, Loeschcke A, Krause J, Minh BQ, Heck A, Endres S, et al. Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria. Mol Microbiol. 2014;93:1066-78.
-
(2014)
Mol Microbiol
, vol.93
, pp. 1066-1078
-
-
Kaschner, M.1
Loeschcke, A.2
Krause, J.3
Minh, B.Q.4
Heck, A.5
Endres, S.6
-
59
-
-
33748041084
-
Heterotachy processes in rhodophyte-derived secondhand plastid genes: Implications for addressing the origin and evolution of dinoflagellate plastids
-
Shalchian-Tabrizi K, Skånseng M, Ronquist F, Klaveness D, Bachvaroff TR, Delwiche CF, et al. Heterotachy processes in rhodophyte-derived secondhand plastid genes: implications for addressing the origin and evolution of dinoflagellate plastids. Mol Biol Evol. 2006;23:1504-15.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1504-1515
-
-
Shalchian-Tabrizi, K.1
Skånseng, M.2
Ronquist, F.3
Klaveness, D.4
Bachvaroff, T.R.5
Delwiche, C.F.6
-
60
-
-
84856216492
-
Supermatrix data highlight the phylogenetic relationships of photosynthetic stramenopiles
-
Yang EC, Boo GH, Kim HJ, Cho SM, Boo SM, Andersen RA, et al. Supermatrix data highlight the phylogenetic relationships of photosynthetic stramenopiles. Protist. 2012;163:217-31.
-
(2012)
Protist
, vol.163
, pp. 217-231
-
-
Yang, E.C.1
Boo, G.H.2
Kim, H.J.3
Cho, S.M.4
Boo, S.M.5
Andersen, R.A.6
-
61
-
-
84903286893
-
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
-
Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, et al. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PLoS Biol. 2014;12:e1001889.
-
(2014)
PLoS Biol
, vol.12
, pp. e1001889
-
-
Keeling, P.J.1
Burki, F.2
Wilcox, H.M.3
Allam, B.4
Allen, E.E.5
Amaral-Zettler, L.A.6
-
62
-
-
84867231487
-
Analysis of Alexandrium tamarense (Dinophyceae) genes reveals the complex evolutionary history of a microbial eukaryote
-
Chan CX, Soares MB, Bonaldo MF, Wisecaver JH, Hackett JD, Anderson DM, et al. Analysis of Alexandrium tamarense (Dinophyceae) genes reveals the complex evolutionary history of a microbial eukaryote. J Phycol. 2012;48:1130-42.
-
(2012)
J Phycol
, vol.48
, pp. 1130-1142
-
-
Chan, C.X.1
Soares, M.B.2
Bonaldo, M.F.3
Wisecaver, J.H.4
Hackett, J.D.5
Anderson, D.M.6
-
63
-
-
84892490680
-
Horizontal gene transfer is a significant driver of gene innovation in dinoflagellates
-
Wisecaver JH, Brosnahan ML, Hackett JD. Horizontal gene transfer is a significant driver of gene innovation in dinoflagellates. Genome Biol Evol. 2013;5:2368-81.
-
(2013)
Genome Biol Evol
, vol.5
, pp. 2368-2381
-
-
Wisecaver, J.H.1
Brosnahan, M.L.2
Hackett, J.D.3
-
64
-
-
84902990659
-
Horizontal gene transfer and redundancy of tryptophan biosynthetic enzymes in dinotoms
-
Imanian B, Keeling PJ. Horizontal gene transfer and redundancy of tryptophan biosynthetic enzymes in dinotoms. Genome Biol Evol. 2014;6:333-43.
-
(2014)
Genome Biol Evol
, vol.6
, pp. 333-343
-
-
Imanian, B.1
Keeling, P.J.2
-
65
-
-
84903388897
-
Phylogenomic analysis of "red" genes from two divergent species of the " green " secondary phototrophs, the chlorarachniophytes, suggests multiple horizontal gene transfers from the red lineage before the divergence of extant chlorarachniophytes
-
Yang Y, Matsuzaki M, Takahashi F, Qu L, Nozaki H. Phylogenomic analysis of "red" genes from two divergent species of the " green " secondary phototrophs, the chlorarachniophytes, suggests multiple horizontal gene transfers from the red lineage before the divergence of extant chlorarachniophytes. PLoS One. 2014;9:e101158.
-
(2014)
PLoS One
, vol.9
, pp. e101158
-
-
Yang, Y.1
Matsuzaki, M.2
Takahashi, F.3
Qu, L.4
Nozaki, H.5
-
66
-
-
84870564943
-
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
-
Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, et al. Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature. 2012;492:59-65.
-
(2012)
Nature
, vol.492
, pp. 59-65
-
-
Curtis, B.A.1
Tanifuji, G.2
Burki, F.3
Gruber, A.4
Irimia, M.5
Maruyama, S.6
-
67
-
-
0036264845
-
The Pinguiophyceae classis nova, a new class of photosynthetic stramenopiles whose members produce large amounts of omega-3 fatty acids
-
Kawachi M, Inouye I, Honda D, Kelly CJO, Bailey JC, Bidigare RR, et al. The Pinguiophyceae classis nova, a new class of photosynthetic stramenopiles whose members produce large amounts of omega-3 fatty acids. Phycol Res. 2002;50:31-47.
-
(2002)
Phycol Res
, vol.50
, pp. 31-47
-
-
Kawachi, M.1
Inouye, I.2
Honda, D.3
Kelly, C.J.O.4
Bailey, J.C.5
Bidigare, R.R.6
-
68
-
-
84905502466
-
Why some clades have low bootstrap frequencies and high Bayesian posterior probabilities
-
García-Sandoval R. Why some clades have low bootstrap frequencies and high Bayesian posterior probabilities. Isr J Ecol Evol. 2014;60:41-4.
-
(2014)
Isr J Ecol Evol
, vol.60
, pp. 41-44
-
-
García-Sandoval, R.1
-
69
-
-
56449118832
-
Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis
-
Frommolt R, Werner S, Paulsen H, Goss R, Wilhelm C, Zauner S, et al. Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis. Mol Biol Evol. 2008;25:2653-67.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 2653-2667
-
-
Frommolt, R.1
Werner, S.2
Paulsen, H.3
Goss, R.4
Wilhelm, C.5
Zauner, S.6
-
70
-
-
67649998350
-
Genomic footprints of a cryptic plastid endosymbiosis in diatoms
-
Moustafa A, Beszteri B, Maier UG, Bowler C, Valentin K, Bhattacharya D. Genomic footprints of a cryptic plastid endosymbiosis in diatoms. Science. 2009;324:1724-6.
-
(2009)
Science
, vol.324
, pp. 1724-1726
-
-
Moustafa, A.1
Beszteri, B.2
Maier, U.G.3
Bowler, C.4
Valentin, K.5
Bhattacharya, D.6
-
71
-
-
84857232993
-
Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia
-
Woehle C, Dagan T, Martin WF, Gould SB. Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia. Genome Biol Evol. 2011;3:1220-30.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 1220-1230
-
-
Woehle, C.1
Dagan, T.2
Martin, W.F.3
Gould, S.B.4
-
72
-
-
77957025820
-
Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
-
Cuvelier ML, Allen AE, Monier A, McCrow JP, Messié M, Tringe SG, et al. Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Proc Natl Acad Sci U S A. 2010;107:14679-84.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 14679-14684
-
-
Cuvelier, M.L.1
Allen, A.E.2
Monier, A.3
McCrow, J.P.4
Messié, M.5
Tringe, S.G.6
-
73
-
-
84865853707
-
Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin
-
Burki F, Flegontov P, Oborník M, Cihlár J, Pain A, Lukes J, et al. Re-evaluating the green versus red signal in eukaryotes with secondary plastid of red algal origin. Genome Biol Evol. 2012;4:626-35.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 626-635
-
-
Burki, F.1
Flegontov, P.2
Oborník, M.3
Cihlár, J.4
Pain, A.5
Lukes, J.6
-
74
-
-
84866394866
-
Reevaluating the green contribution to diatom genomes
-
Deschamps P, Moreira D. Reevaluating the green contribution to diatom genomes. Genome Biol Evol. 2012;4:683-8.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 683-688
-
-
Deschamps, P.1
Moreira, D.2
-
76
-
-
84985292673
-
The cryptomonad nucleomorph: Its ultrastructure and evolutionary significance
-
Gillott M, Gibbs S. The cryptomonad nucleomorph: its ultrastructure and evolutionary significance. J Phycol. 1980;16:558-68.
-
(1980)
J Phycol
, vol.16
, pp. 558-568
-
-
Gillott, M.1
Gibbs, S.2
-
77
-
-
43049085945
-
The eukaryotic tree of life: Endosymbiosis takes its TOL
-
Lane CE, Archibald JM. The eukaryotic tree of life: endosymbiosis takes its TOL. Trends Ecol Evol. 2008;23:268-75.
-
(2008)
Trends Ecol Evol
, vol.23
, pp. 268-275
-
-
Lane, C.E.1
Archibald, J.M.2
-
78
-
-
79551514620
-
After the primary endosymbiosis: An update on the chromalveolate hypothesis and the origins of algae with Chl c
-
Green BR. After the primary endosymbiosis: an update on the chromalveolate hypothesis and the origins of algae with Chl c. Photosynth Res. 2011;107:103-15.
-
(2011)
Photosynth Res
, vol.107
, pp. 103-115
-
-
Green, B.R.1
-
79
-
-
84923371638
-
The evolution of photosynthesis in chromist algae through serial endosymbioses
-
Stiller JW, Schreiber J, Yue J, Guo H, Ding Q, Huang J. The evolution of photosynthesis in chromist algae through serial endosymbioses. Nat Commun. 2014;5:5764.
-
(2014)
Nat Commun
, vol.5
, pp. 5764
-
-
Stiller, J.W.1
Schreiber, J.2
Yue, J.3
Guo, H.4
Ding, Q.5
Huang, J.6
-
80
-
-
70449135018
-
Plastid genomes of two brown algae. Ectocarpus siliculosus and Fucus vesiculosus: Further insights on the evolution of red-algal derived plastids
-
Le Corguillé G, Pearson G, Valente M, Viegas C, Gschloessl B, Corre E, et al. Plastid genomes of two brown algae. Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids. BMC Evol Biol. 2009;9:253.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 253
-
-
Le Corguillé, G.1
Pearson, G.2
Valente, M.3
Viegas, C.4
Gschloessl, B.5
Corre, E.6
-
81
-
-
77954636478
-
A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids
-
Janouškovec J, Horák A, Oborník M, Lukes J, Keeling PJ. A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc Natl Acad Sci U S A. 2010;107:10949-54.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 10949-10954
-
-
Janouškovec, J.1
Horák, A.2
Oborník, M.3
Lukes, J.4
Keeling, P.J.5
-
82
-
-
33748895571
-
An exceptional horizontal gene transfer in plastids: Gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters
-
Rice DW, Palmer JD. An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters. BMC Biol. 2006;4:31.
-
(2006)
BMC Biol
, vol.4
, pp. 31
-
-
Rice, D.W.1
Palmer, J.D.2
-
83
-
-
84904271391
-
The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles
-
Hovde BT, Starkenburg SR, Hunsperger HM, Mercer LD, Deodato CR, Jha RK, et al. The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles. BMC Genomics. 2014;15:604.
-
(2014)
BMC Genomics
, vol.15
, pp. 604
-
-
Hovde, B.T.1
Starkenburg, S.R.2
Hunsperger, H.M.3
Mercer, L.D.4
Deodato, C.R.5
Jha, R.K.6
-
84
-
-
0001755036
-
Phylogenetic relationships of the "golden algae" (haptophytes, heterokont chromophytes) and their plastids
-
Medlin L, Kooistra W, Potter D, Saunders G, Andersen R. Phylogenetic relationships of the "golden algae" (haptophytes, heterokont chromophytes) and their plastids. Plant Syst Evol. 1997;11:187-219.
-
(1997)
Plant Syst Evol
, vol.11
, pp. 187-219
-
-
Medlin, L.1
Kooistra, W.2
Potter, D.3
Saunders, G.4
Andersen, R.5
-
85
-
-
1942469414
-
A molecular timeline for the origin of photosynthetic eukaryotes
-
Yoon HS, Hackett JD, Ciniglia C, Pinto G, Bhattacharya D. A molecular timeline for the origin of photosynthetic eukaryotes. Mol Biol Evol. 2004;21:809-18.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 809-818
-
-
Yoon, H.S.1
Hackett, J.D.2
Ciniglia, C.3
Pinto, G.4
Bhattacharya, D.5
-
86
-
-
33750618212
-
A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record
-
Berney C, Pawlowski J. A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record. Proc Biol Sci. 2006;273:1867-72.
-
(2006)
Proc Biol Sci
, vol.273
, pp. 1867-1872
-
-
Berney, C.1
Pawlowski, J.2
-
87
-
-
38349143165
-
Photoactive pigment- enzyme complexes of chlorophyll precursor in plant leaves
-
Belyaeva OB, Litvin FF. Photoactive pigment- enzyme complexes of chlorophyll precursor in plant leaves. Biochem. 2007;72:1458-77.
-
(2007)
Biochem
, vol.72
, pp. 1458-1477
-
-
Belyaeva, O.B.1
Litvin, F.F.2
-
88
-
-
79952453090
-
Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin
-
Matsumoto T, Shinozaki F, Chikuni T, Yabuki A, Takishita K, Kawachi M, et al. Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin. Protist. 2011;162:268-76.
-
(2011)
Protist
, vol.162
, pp. 268-276
-
-
Matsumoto, T.1
Shinozaki, F.2
Chikuni, T.3
Yabuki, A.4
Takishita, K.5
Kawachi, M.6
-
89
-
-
77953236552
-
Transcriptome analysis reveals nuclear-encoded proteins for the maintenance of temporary plastids in the dinoflagellate Dinophysis acuminata
-
Wisecaver JH, Hackett JD. Transcriptome analysis reveals nuclear-encoded proteins for the maintenance of temporary plastids in the dinoflagellate Dinophysis acuminata. BMC Genomics. 2010;11:366.
-
(2010)
BMC Genomics
, vol.11
, pp. 366
-
-
Wisecaver, J.H.1
Hackett, J.D.2
-
91
-
-
33645100385
-
A tertiary plastid uses genes from two endosymbionts
-
Patron NJ, Waller RF, Keeling PJ. A tertiary plastid uses genes from two endosymbionts. J Mol Biol. 2006;357:1373-82.
-
(2006)
J Mol Biol
, vol.357
, pp. 1373-1382
-
-
Patron, N.J.1
Waller, R.F.2
Keeling, P.J.3
-
92
-
-
0037015024
-
A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis
-
Yoon HS, Hackett JD, Bhattacharya D. A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis. Proc Natl Acad Sci U S A. 2002;99:11724-9.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 11724-11729
-
-
Yoon, H.S.1
Hackett, J.D.2
Bhattacharya, D.3
-
93
-
-
36849080234
-
Origins of the secondary plastids of Euglenophyta and Chlorarachniophyta as revealed by an analysis of the plastid-targeting, nuclear-encoded gene psbO 1
-
Takahashi F, Okabe Y, Nakada T, Sekimoto H, Ito M, Kataoka H, et al. Origins of the secondary plastids of Euglenophyta and Chlorarachniophyta as revealed by an analysis of the plastid-targeting, nuclear-encoded gene psbO 1. J Phycol. 2007;43:1302-9.
-
(2007)
J Phycol
, vol.43
, pp. 1302-1309
-
-
Takahashi, F.1
Okabe, Y.2
Nakada, T.3
Sekimoto, H.4
Ito, M.5
Kataoka, H.6
-
94
-
-
60149094050
-
The chloroplast genomes of the green algae Pyramimonas, Monomastix, and Pycnococcus shed new light on the evolutionary history of prasinophytes and the origin of the secondary chloroplasts of euglenids
-
Turmel M, Gagnon M-C, O'Kelly CJ, Otis C, Lemieux C. The chloroplast genomes of the green algae Pyramimonas, Monomastix, and Pycnococcus shed new light on the evolutionary history of prasinophytes and the origin of the secondary chloroplasts of euglenids. Mol Biol Evol. 2009;26:631-48.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 631-648
-
-
Turmel, M.1
Gagnon, M.-C.2
O'Kelly, C.J.3
Otis, C.4
Lemieux, C.5
-
95
-
-
82555171612
-
Lotharella reticulosa sp. Nov.: A highly reticulated network forming chlorarachniophyte from the Mediterranean Sea
-
Ota S, Vaulot D. Lotharella reticulosa sp. nov.: a highly reticulated network forming chlorarachniophyte from the Mediterranean Sea. Protist. 2012;163:91-104.
-
(2012)
Protist
, vol.163
, pp. 91-104
-
-
Ota, S.1
Vaulot, D.2
-
96
-
-
0030613319
-
Acclimation of photosynthesis to irradiance and spectral quality in British plant species: Chlorophyll content, photosynthetic capacity and habitat preference
-
Murchie EH, Horton P. Acclimation of photosynthesis to irradiance and spectral quality in British plant species: chlorophyll content, photosynthetic capacity and habitat preference. Plant Cell Environ. 1997;20:438-48.
-
(1997)
Plant Cell Environ
, vol.20
, pp. 438-448
-
-
Murchie, E.H.1
Horton, P.2
-
97
-
-
0030617742
-
Dynamic model of phytoplankton growth and acclimation: Responses of the balanced growth rate and the chlorophyll a:Carbon ratio to light, nutrient-limitation and temperature
-
Geider R, MacIntyre H, Kana T. Dynamic model of phytoplankton growth and acclimation: responses of the balanced growth rate and the chlorophyll a:carbon ratio to light, nutrient-limitation and temperature. Mar Ecol Prog Ser. 1997;148:187-200.
-
(1997)
Mar Ecol Prog Ser
, vol.148
, pp. 187-200
-
-
Geider, R.1
MacIntyre, H.2
Kana, T.3
-
98
-
-
0347131383
-
Protochlorophyllide reduction: Mechanisms and evolution
-
Schoefs B, Franck F. Protochlorophyllide reduction: mechanisms and evolution. Photochem Photobiol. 2003;78:543-57.
-
(2003)
Photochem Photobiol
, vol.78
, pp. 543-557
-
-
Schoefs, B.1
Franck, F.2
-
99
-
-
0032006920
-
Cloning of the gene encoding a protochlorophyllide reductase: The physiological significance of the co-existence of light-dependent and -independent protochlorophyllide reduction systems in the cyanobacterium Plectonema boryanum
-
Fujita Y, Takagi H, Hase T. Cloning of the gene encoding a protochlorophyllide reductase: the physiological significance of the co-existence of light-dependent and -independent protochlorophyllide reduction systems in the cyanobacterium Plectonema boryanum. Plant Cell Physiol. 1998;39:177-85.
-
(1998)
Plant Cell Physiol
, vol.39
, pp. 177-185
-
-
Fujita, Y.1
Takagi, H.2
Hase, T.3
-
100
-
-
41449089777
-
NB-protein (BchN-BchB) of dark-operative protochlorophyllide reductase is the catalytic component containing oxygen-tolerant Fe-S clusters
-
Nomata J, Ogawa T, Kitashima M, Inoue K, Fujita Y. NB-protein (BchN-BchB) of dark-operative protochlorophyllide reductase is the catalytic component containing oxygen-tolerant Fe-S clusters. FEBS Lett. 2008;582:1346-50.
-
(2008)
FEBS Lett
, vol.582
, pp. 1346-1350
-
-
Nomata, J.1
Ogawa, T.2
Kitashima, M.3
Inoue, K.4
Fujita, Y.5
-
101
-
-
77956241157
-
Crystal structure of the nitrogenase-like dark operative protochlorophyllide oxidoreductase catalytic complex (ChlN/ChlB)2
-
Bröcker MJ, Schomburg S, Heinz DW, Jahn D, Schubert W-D, Moser J. Crystal structure of the nitrogenase-like dark operative protochlorophyllide oxidoreductase catalytic complex (ChlN/ChlB)2. J Biol Chem. 2010;285:27336-45.
-
(2010)
J Biol Chem
, vol.285
, pp. 27336-27345
-
-
Bröcker, M.J.1
Schomburg, S.2
Heinz, D.W.3
Jahn, D.4
Schubert, W.-D.5
Moser, J.6
-
102
-
-
33748319492
-
Controls on tropical Pacific Ocean productivity revealed through nutrient stress diagnostics
-
Behrenfeld MJ, Worthington K, Sherrell RM, Chavez FP, Strutton P, McPhaden M, et al. Controls on tropical Pacific Ocean productivity revealed through nutrient stress diagnostics. Nature. 2006;442:1025-8.
-
(2006)
Nature
, vol.442
, pp. 1025-1028
-
-
Behrenfeld, M.J.1
Worthington, K.2
Sherrell, R.M.3
Chavez, F.P.4
Strutton, P.5
McPhaden, M.6
-
103
-
-
77957294748
-
Oceanographic and biogeochemical insights from diatom genomes
-
Bowler C, Vardi A, Allen AE. Oceanographic and biogeochemical insights from diatom genomes. Ann Rev Mar Sci. 2010;2:333-65.
-
(2010)
Ann Rev Mar Sci
, vol.2
, pp. 333-365
-
-
Bowler, C.1
Vardi, A.2
Allen, A.E.3
-
104
-
-
0001074120
-
Iron-induced changes in light harvesting and photochemical energy conversion processes in eukaryotic marine algae
-
Greene RM, Geider RJ, Kolber Z, Falkowski PG. Iron-induced changes in light harvesting and photochemical energy conversion processes in eukaryotic marine algae. Plant Physiol. 1992;100:565-75.
-
(1992)
Plant Physiol
, vol.100
, pp. 565-575
-
-
Greene, R.M.1
Geider, R.J.2
Kolber, Z.3
Falkowski, P.G.4
-
105
-
-
0027137525
-
Induction of specific proteins in eukaryotic algae grown under iron-, phosphorus-, or nitrogen-deficient conditions
-
La Roche J, Geider RJ, Graziano LM, Murray H, Lewis K. Induction of specific proteins in eukaryotic algae grown under iron-, phosphorus-, or nitrogen-deficient conditions. J Phycol. 1993;29:767-77.
-
(1993)
J Phycol
, vol.29
, pp. 767-777
-
-
La Roche, J.1
Geider, R.J.2
Graziano, L.M.3
Murray, H.4
Lewis, K.5
-
106
-
-
0001028792
-
Flavodoxin expression as an indicator of iron limitation in marine diatoms
-
La Roche J, Murray H, Orellana M, Newton J. Flavodoxin expression as an indicator of iron limitation in marine diatoms. J Phycol. 1995;31:520-30.
-
(1995)
J Phycol
, vol.31
, pp. 520-530
-
-
La Roche, J.1
Murray, H.2
Orellana, M.3
Newton, J.4
-
107
-
-
27544442817
-
Making light work of enzyme catalysis: Protochlorophyllide oxidoreductase
-
Heyes DJ, Hunter CN. Making light work of enzyme catalysis: protochlorophyllide oxidoreductase. Trends Biochem Sci. 2005;30:642-9.
-
(2005)
Trends Biochem Sci
, vol.30
, pp. 642-649
-
-
Heyes, D.J.1
Hunter, C.N.2
-
108
-
-
0008555965
-
The isolation and spectral absorption properties of protochlorophyll from etiolated barley seedlings
-
Koski VM, Smith JHC. The isolation and spectral absorption properties of protochlorophyll from etiolated barley seedlings. J Am Chem Soc. 1948;70:3558-62.
-
(1948)
J Am Chem Soc
, vol.70
, pp. 3558-3562
-
-
Koski, V.M.1
Smith, J.H.C.2
-
109
-
-
84861635551
-
Catalytic efficiency of a photoenzyme - An adaptation to natural light conditions
-
Hanf R, Fey S, Schmitt M, Hermann G, Dietzek B, Popp J. Catalytic efficiency of a photoenzyme - an adaptation to natural light conditions. ChemPhysChem. 2012;13:2013-5.
-
(2012)
ChemPhysChem
, vol.13
, pp. 2013-2015
-
-
Hanf, R.1
Fey, S.2
Schmitt, M.3
Hermann, G.4
Dietzek, B.5
Popp, J.6
-
110
-
-
84881178651
-
Comment on "Catalytic efficiency of a photoenzyme-an adaptation to natural light conditions" by J Popp et al
-
author reply 2598-2600
-
Björn LO. Comment on "Catalytic efficiency of a photoenzyme-an adaptation to natural light conditions" by J Popp et al. Chemphyschem. 2013;14:2595-7. author reply 2598-2600.
-
(2013)
Chemphyschem
, vol.14
, pp. 2595-2597
-
-
Björn, L.O.1
-
111
-
-
0036233453
-
Heterosigma akashiwo (Raphidophyceae) resting cell formation in batch culture: Strain identity versus physiological response
-
Han M, Kim Y, Cattolico RA. Heterosigma akashiwo (Raphidophyceae) resting cell formation in batch culture: strain identity versus physiological response. J Phycol. 2002;317:304-17.
-
(2002)
J Phycol
, vol.317
, pp. 304-317
-
-
Han, M.1
Kim, Y.2
Cattolico, R.A.3
-
112
-
-
84885060768
-
Behavioral and physiological changes during benthic-pelagic transition in the harmful alga, Heterosigma akashiwo: Potential for rapid bloom formation
-
Tobin ED, Grünbaum D, Patterson J, Cattolico RA. Behavioral and physiological changes during benthic-pelagic transition in the harmful alga, Heterosigma akashiwo: potential for rapid bloom formation. PLoS One. 2013;8:e76663.
-
(2013)
PLoS One
, vol.8
, pp. e76663
-
-
Tobin, E.D.1
Grünbaum, D.2
Patterson, J.3
Cattolico, R.A.4
-
113
-
-
33746215046
-
An efficient and economic enhancer mix for PCR
-
Ralser M, Querfurth R, Warnatz H-J, Lehrach H, Yaspo M-L, Krobitsch S. An efficient and economic enhancer mix for PCR. Biochem Biophys Res Commun. 2006;347:747-51.
-
(2006)
Biochem Biophys Res Commun
, vol.347
, pp. 747-751
-
-
Ralser, M.1
Querfurth, R.2
Warnatz, H.-J.3
Lehrach, H.4
Yaspo, M.-L.5
Krobitsch, S.6
-
114
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
Burge C, Karlin S. Prediction of complete gene structures in human genomic DNA. J Mol Biol. 1997;268:78-94.
-
(1997)
J Mol Biol
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
115
-
-
0035002015
-
Computational inference of homologous gene structures in the human genome
-
Yeh R-F, Lim LP, Burge CB. Computational inference of homologous gene structures in the human genome. Genome Res. 2001;11:803-16.
-
(2001)
Genome Res
, vol.11
, pp. 803-816
-
-
Yeh, R.-F.1
Lim, L.P.2
Burge, C.B.3
-
117
-
-
0030056704
-
Secondary structure of NADPH: Protochlorophyllide oxidoreductase examined by circular dichroism and prediction methods
-
Birve S, Selstam E, Johansson B. Secondary structure of NADPH: protochlorophyllide oxidoreductase examined by circular dichroism and prediction methods. Biochem J. 1996;317:549-55.
-
(1996)
Biochem J
, vol.317
, pp. 549-555
-
-
Birve, S.1
Selstam, E.2
Johansson, B.3
-
118
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32:1792-7.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
119
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
Abascal F, Zardoya R, Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics. 2005;21:2104-5.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
121
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006;22:2688-90.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
122
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 2003;19:1572-4.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
123
-
-
84923924924
-
-
Tracer http://tree.bio.ed.ac.uk/software/tracer/
-
Tracer
-
-
-
124
-
-
84923871096
-
-
FigTree http://tree.bio.ed.ac.uk/software/figtree/
-
FigTree
-
-
-
125
-
-
84923884692
-
Data from: Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae
-
Hunsperger HM, Randhawa T, Cattolico RA. Data from: extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae. BMC Evol Biol 2015.
-
(2015)
BMC Evol Biol
-
-
Hunsperger, H.M.1
Randhawa, T.2
Cattolico, R.A.3
|