Lotharella reticulosa sp. nov.: A Highly Reticulated Network Forming Chlorarachniophyte from the Mediterranean Sea

Protist

Volumn 163, Issue 1, 2012, Pages 91-104

  Ota, Shuhei ^a,b   Vaulot, Daniel ^a  

^a STATION BIOLOGIQUE DE ROSCOFF   (France)

^b UNIVERSITY OF OSLO   (Norway)

Author keywords

Chlorarachniophytes; Lotharella; Mediterranean Sea; RCC375; RCC376; Taxonomy.

Indexed keywords

PROTOZOAL DNA; RIBOSOME DNA; SEA WATER;

ARTICLE; CERCOZOA; CLASSIFICATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MEDITERRANEAN SEA; MOLECULAR GENETICS; PARASITOLOGY; PHYLOGENY;

CERCOZOA; DNA, PROTOZOAN; DNA, RIBOSOMAL; MEDITERRANEAN SEA; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEAWATER;

CHLORARACHNIOPHYCEAE; COCCOIDEA; LOTHARELLA; MASTIGOPHORA (FLAGELLATES);

EID: 82555171612     PISSN: 14344610     EISSN: 16180941     Source Type: Journal    
DOI: 10.1016/j.protis.2011.02.004     Document Type: Article

References (38)

1. Bass D., Moreira D., López-García P., Polet S., Chao E.E., von der Heyden S., Pawlowski J., Cavalier-Smith T. Polyubiquitin insertions and the phylogeny of Cercozoa and Rhizaria. Protist 2005, 156:149-161.
2. Bass D., Chao E.E., Nikolaev S., Yabuki A., Ishida K., Berney C., Pakzad U., Wylezich C., Cavalier-Smith T. Phylogeny of novel naked filose and reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea revised. Protist 2009, 160:75-109.
3. Burki F., Kudryavtsev A., Matz M.V., Aglyamova G.V., Bulman S., Fiers M., Keeling P.J., Pawlowski J. Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists. BMC Evol Biol 2010, 10:377.
4. Calderon-Saenz E., Schnetter R. Cryptochlora perforans, a new genus and species of algae (Chlorarachniophyta), capable of penetrating dead algal filaments. Plant Syst Evol 1987, 158:69-71.
5. Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000, 17:540-552.
6. Cavalier-Smith T., Chao E.E. Phylogeny and classification of phylum Cercozoa (Protozoa). Protist 2003, 154:341-358.
7. Dietz C., Ehlers K., Wilhelm C., Gil-Rodríguez M.C., Schnetter R. Lotharella polymorpha sp. nov. (Chlorarachniophyta) from the coast of Portugal. Phycologia 2003, 42:582-593.
8. Geitler L. Ein grünes Filarplasmodium und andere neue Protisten. Arch Protistenkd 1930, 69:615-636.
9. Gile G.H., Stern R.F., James E.R., Keeling P.J. DNA barcoding of chlorarachniophytes using nucleomorph ITS sequences. J Phycol 2010, 46:743-750.
10. Guindon S., Gascuel O. A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Syst Biol 2003, 52:696-704.
11. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 1999, 41:95-98.
12. Hibberd D.J., Norris R.E. Cytology and ultrastructure of Chlorarachnion reptans (Chlorarachniophyta divisio nova, Chlorarachniophyceae classis nova). J Phycol 1984, 20:310-330.
13. Ishida K., Hara Y. Taxonomic studies on the Chlorarachniophyta. I. Chlorarachnion globosum sp. nov. Phycologia 1994, 33:351-358.
14. Ishida K., Green B.R., Cavalier-Smith T. Diversification of a chimaeric algal group, the chlorarachniophytes: phylogeny of nuclear and nucleomorph small-subunit rRNA genes. Mol Biol Evol 1999, 16:321-331.
15. Ishida K., Ishida N., Hara Y. Lotharella amoeboformis sp. nov.: A new species of chlorarachniophytes from Japan. Phycol Res 2000, 48:221-229.
16. Ishida K., Nakayama T., Hara Y. Taxonomic studies on the Chlorarachniophyta. II. Generic delimitation of the chlorarachniophytes and description of Gymnochlora stellata gen. et sp. nov. and Lotharella gen. nov. Phycol Res 1996, 44:37-45.
17. Ishida K., Yabuki A., Ota S. The Chlorarachniophytes: Evolution and Classification. Unravelling the Algae: the Past, Present, and Future of Algal Systematics 2007, 171-182. CRC Press, Taylor & Francis Group, Boca Raton, FL. J. Brodie, J. Lewis (Eds.).
18. Ishida K., Yabuki A., Ota S. Amorphochlora amoebiformis gen. et comb. nov. (Chlorarachniophyceae). Phycol Res 2011, 59:52-53.
19. Kasai F., Kawachi M., Erata M., Mori F., Yumoto K., Sato M., Ishimoto M. NIES-collection list of strains, 8th edition. The Japanese Journal of Phycology (Sôrui) 2009, 57(Suppl.):1-350.
20. Keeling P.J. Foraminifera and Cercozoa are related in actin phylogeny: two orphans find a home?. Mol Biol Evol 2001, 18:1551-1557.
21. Keller M.D., Selvin R.C., Claus W., Guillard R.R.L. Media for the culture of oceanic ultraphytoplankton. J Phycol 1987, 23:633-638.
22. Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J., Higgins D.G. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
23. Ludwig M., Gibbs S.P. Evidence that the nucleomorphs of Chlorarachnion reptans (Chlorarachniophyceae) are vestigial nuclei: morphology, division and DNA-DAPI fluorescence. J Phycol 1989, 25:385-394.
24. McFadden G.I., Gilson P.R., Hofmann C.J.B., Adcock G.J., Maier U.-G. Evidence that an amoeba acquired a chloroplast by relating part of an engulfed eukaryotic alga. Proc Natl Acad Sci USA 1994, 91:3690-3694.
25. Moestrup Ø., Sengco M. Ultrastructural studies on Bigelowiella natans, gen. et sp. nov., a chlorarachniophyte flagellate. J Phycol 2001, 37:624-646.
26. Not F., Gausling R., Azam F., Heidelberg J.F., Worden A.Z. Vertical distribution of picoeukaryotic diversity in the Sargasso Sea. Environ Microbiol 2007, 9:1233-1252.
27. Ota S., Ueda K., Ishida K. Lotharella vacuolata sp. nov., a new species of chlorarachniophyte algae, and time-lapse video observations on its unique post-cell division behavior. Phycol Res 2005, 53:275-286.
28. Ota S., Ueda K., Ishida K. Taxonomic study of Bigelowiella longifila sp. nov. (Chlorarachniophyta) and a time-lapse video observation on the unique migration of amoeboid cells. J Phycol 2007, 43:333-343.
29. Ota S., Ueda K., Ishida K. Norrisiella sphaerica gen. et sp. nov., a new coccoid chlorarachniophyte from Baja California, Mexico. J Plant Res 2007, 120:661-670.
30. Ota S., Silver T.D., Archibald J.M., Ishida K. Lotharella oceanica sp. nov. - a new planktonic chlorarachniophyte studied by light and electron microscopy. Phycologia 2009, 48:315-323.
31. Ota S., Vaulot D., Le Gall F., Yabuki A., Ishida K. Partenskyella glossopodia gen. et sp. nov., the first report of a chlorarachniophyte that lacks a pyrenoid. Protist 2009, 160:137-150.
32. Ota S., Kudo A., Ishida K. Gymnochlora dimorpha sp. nov., a chlorarachniophyte with unique daughter cell behaviour. Phycologia 2011, 50(3). in press.
33. Reynolds E.S. The use of lead citrate at high pH as an electron opaque stain in electron microscopy. J Cell Biol 1963, 17:208-212.
34. Rogers M.B., Gilson P.R., Su V., McFadden G.I., Keeling P.J. The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts. Mol Biol Evol 2007, 24:54-62.
35. Ronquist F., Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
36. Silver T.D., Koike S., Yabuki A., Kofuji R., Archibald J.M., Ishida K. Phylogeny and nucleomorph karyotype diversity of chlorarachniophyte algae. J Eukaryot Microbiol 2007, 54:403-410.
37. Takahashi F., Okabe Y., Nakada T., Sekimoto H., Ito M., Kataoka H., Nozaki H. Origins of the secondary plastids of Euglenophyta and Chlorarachniophyta as revealed by an analysis of the plastid-targeting, nuclear-encoded gene psbO. J Phycol 2007, 43:1302-1309.
38. Worden A.Z. Picoeukaryote diversity in coastal waters of the Pacific Ocean. Aquat Microb Ecol 2006, 43:165-175.