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Volumn 26, Issue 3, 2009, Pages 631-648

The chloroplast genomes of the green algae Pyramimonas, Monomastix, and Pycnococcus shed new light on the evolutionary history of prasinophytes and the origin of the secondary chloroplasts of euglenids

Author keywords

Chloroplast genome evolution; Euglenids; Genome reduction; Horizontal DNA transfers; Phylogenomics; Prasinophyte green algae; Secondary endosymbiosis

Indexed keywords

ALGAE, GREEN; ANIMALS; CHLOROPLASTS; DNA, ALGAL; EUGLENIDA; GENOME, CHLOROPLAST; SEQUENCE ANALYSIS, DNA;

EID: 60149094050     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msn285     Document Type: Article
Times cited : (178)

References (82)
  • 1
    • 56849114016 scopus 로고    scopus 로고
    • An overview of the phylogeny and diversity of eucaryotes
    • Baldauf SL. 2008. An overview of the phylogeny and diversity of eucaryotes. J Syst Evol. 46:263-273.
    • (2008) J Syst Evol , vol.46 , pp. 263-273
    • Baldauf, S.L.1
  • 2
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF. 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science. 290:972-977.
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 3
    • 33748952472 scopus 로고    scopus 로고
    • Distinctive architecture of the chloroplast genome in the chlorophycean green alga Stigeoclonium helveticum
    • Bélanger A-S, Brouard J-S, Charlebois P, Otis C, Lemieux C, Turmel M. 2006. Distinctive architecture of the chloroplast genome in the chlorophycean green alga Stigeoclonium helveticum. Mol Genet Genomics. 276:464-477.
    • (2006) Mol Genet Genomics , vol.276 , pp. 464-477
    • Bélanger, A.-S.1    Brouard, J.-S.2    Charlebois, P.3    Otis, C.4    Lemieux, C.5    Turmel, M.6
  • 4
    • 56849114276 scopus 로고    scopus 로고
    • Animal phylogeny and large-scale sequencing: Progress and pitfalls
    • Brinkmann H, Philippe H. 2008. Animal phylogeny and large-scale sequencing: progress and pitfalls. J Syst Evol. 46:274-286.
    • (2008) J Syst Evol , vol.46 , pp. 274-286
    • Brinkmann, H.1    Philippe, H.2
  • 5
    • 46649089921 scopus 로고    scopus 로고
    • Chloroplast DNA sequence of the green alga Oedogonium cardiacum (Chlorophyceae): Unique genome architecture, derived characters shared with the Chaetophorales and novel genes acquired through horizontal transfer
    • Brouard J-S, Otis C, Lemieux C, Turmel M. 2008. Chloroplast DNA sequence of the green alga Oedogonium cardiacum (Chlorophyceae): unique genome architecture, derived characters shared with the Chaetophorales and novel genes acquired through horizontal transfer. BMC Genomics. 9:290.
    • (2008) BMC Genomics , vol.9 , pp. 290
    • Brouard, J.-S.1    Otis, C.2    Lemieux, C.3    Turmel, M.4
  • 6
    • 0033197505 scopus 로고    scopus 로고
    • Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea. Cyanobacterial introns and shared ancestry of red and green algae
    • Burger G, Saint-Louis D, Gray MW, Lang BF. 1999. Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea. Cyanobacterial introns and shared ancestry of red and green algae. Plant Cell. 11:1675-1694.
    • (1999) Plant Cell , vol.11 , pp. 1675-1694
    • Burger, G.1    Saint-Louis, D.2    Gray, M.W.3    Lang, B.F.4
  • 7
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17:540-552.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 9
    • 0038061526 scopus 로고    scopus 로고
    • Flexible DNA target site recognition by divergent homing endonuclease isoschizomers I-CreI and I-MsoI
    • Chevalier B, Turmel M, Lemieux C, Monnat RJ, Stoddard BL. 2003. Flexible DNA target site recognition by divergent homing endonuclease isoschizomers I-CreI and I-MsoI. J Mol Biol. 329:253-269.
    • (2003) J Mol Biol , vol.329 , pp. 253-269
    • Chevalier, B.1    Turmel, M.2    Lemieux, C.3    Monnat, R.J.4    Stoddard, B.L.5
  • 10
    • 0027321537 scopus 로고
    • The single group-I intron in the chloroplast rrnL gene of Chlamydomonas humicola encodes a site-specific DNA endonuclease (I-ChuI)
    • Côté V, Mercier J-P, Lemieux C, Turmel M. 1993. The single group-I intron in the chloroplast rrnL gene of Chlamydomonas humicola encodes a site-specific DNA endonuclease (I-ChuI). Gene. 129:69-76.
    • (1993) Gene , vol.129 , pp. 69-76
    • Côté, V.1    Mercier, J.-P.2    Lemieux, C.3    Turmel, M.4
  • 12
    • 33746275499 scopus 로고    scopus 로고
    • The complete chloroplast genome sequence of the chlorophycean green alga Scenedesmus obliquus reveals a compact gene organization and a biased distribution of genes on the two DNA strands
    • de Cambiaire J-C, Otis C, Lemieux C, Turmel M. 2006. The complete chloroplast genome sequence of the chlorophycean green alga Scenedesmus obliquus reveals a compact gene organization and a biased distribution of genes on the two DNA strands. BMC Evol Biol. 6:37.
    • (2006) BMC Evol Biol , vol.6 , pp. 37
    • de Cambiaire, J.-C.1    Otis, C.2    Lemieux, C.3    Turmel, M.4
  • 13
    • 34547108104 scopus 로고    scopus 로고
    • The chloroplast genome sequence of the green alga Leptosira terrestris: Multiple losses of the inverted repeat and extensive genome rearrangements within the Trebouxiophyceae
    • de Cambiaire J-C, Otis C, Lemieux C, Turmel M. 2007. The chloroplast genome sequence of the green alga Leptosira terrestris: multiple losses of the inverted repeat and extensive genome rearrangements within the Trebouxiophyceae. BMC Genomics. 8:213.
    • (2007) BMC Genomics , vol.8 , pp. 213
    • de Cambiaire, J.-C.1    Otis, C.2    Lemieux, C.3    Turmel, M.4
  • 14
    • 33746830079 scopus 로고    scopus 로고
    • Derelle E, Ferraz C, Rombauts S, et al. (26 co-authors). 2006. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci USA. 103:11647-11652.
    • Derelle E, Ferraz C, Rombauts S, et al. (26 co-authors). 2006. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci USA. 103:11647-11652.
  • 15
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 16
    • 84959795073 scopus 로고
    • Phylogenetic analysis under Dollo's Law
    • Farris JS. 1977. Phylogenetic analysis under Dollo's Law. Syst Zool. 26:77-88.
    • (1977) Syst Zool , vol.26 , pp. 77-88
    • Farris, J.S.1
  • 17
    • 0033857703 scopus 로고    scopus 로고
    • Phylogenetic analyses of 18S rDNA sequences reveal a new coccoid lineage of the Prasinophyceae (Chlorophyta)
    • Fawley MW, Yun Y, Qin M. 2000. Phylogenetic analyses of 18S rDNA sequences reveal a new coccoid lineage of the Prasinophyceae (Chlorophyta). J Phycol. 36:387-393.
    • (2000) J Phycol , vol.36 , pp. 387-393
    • Fawley, M.W.1    Yun, Y.2    Qin, M.3
  • 19
    • 3042806881 scopus 로고    scopus 로고
    • Diversity of picoplanktonic prasinophytes assessed by direct nuclear SSU rDNA sequencing of environmental samples and novel isolates retrieved from oceanic and coastal marine ecosystems
    • Guillou L, Eikrem W, Chrétiennot-Dinet M-J, Le Gall F, Massana R, Romari K, Pedrós-Alió C, Vaulot D. 2004. Diversity of picoplanktonic prasinophytes assessed by direct nuclear SSU rDNA sequencing of environmental samples and novel isolates retrieved from oceanic and coastal marine ecosystems. Protist. 155:193-214.
    • (2004) Protist , vol.155 , pp. 193-214
    • Guillou, L.1    Eikrem, W.2    Chrétiennot-Dinet, M.-J.3    Le Gall, F.4    Massana, R.5    Romari, K.6    Pedrós-Alió, C.7    Vaulot, D.8
  • 21
    • 0002780775 scopus 로고
    • Ribosomal RNA as a phylogenetic tool in plant systematics
    • Soltis P, Soltis D, Doyle J, editors, New York: Routledge, Chapman and Hall. p
    • Hamby RK, Zimmer EA. 1991. Ribosomal RNA as a phylogenetic tool in plant systematics. In: Soltis P, Soltis D, Doyle J, editors. Molecular systematics in plants. New York: Routledge, Chapman and Hall. p. 50-91.
    • (1991) Molecular systematics in plants , pp. 50-91
    • Hamby, R.K.1    Zimmer, E.A.2
  • 23
    • 56849104634 scopus 로고    scopus 로고
    • Taxon sampling and the accuracy of phylogenetic analyses
    • Heath TA, Hedtke SM, Hillis DM. 2008. Taxon sampling and the accuracy of phylogenetic analyses. J Syst Evol. 46:239-257.
    • (2008) J Syst Evol , vol.46 , pp. 239-257
    • Heath, T.A.1    Hedtke, S.M.2    Hillis, D.M.3
  • 24
    • 0031450395 scopus 로고    scopus 로고
    • The origin of chlorarachniophyte plastids, as inferred from phylogenetic comparisons of amino acid sequences of EFTu
    • Ishida K, Cao Y, Hasegawa M, Okada N, Hara Y. 1997. The origin of chlorarachniophyte plastids, as inferred from phylogenetic comparisons of amino acid sequences of EFTu. J Mol Evol. 45:682-687.
    • (1997) J Mol Evol , vol.45 , pp. 682-687
    • Ishida, K.1    Cao, Y.2    Hasegawa, M.3    Okada, N.4    Hara, Y.5
  • 25
    • 37649007931 scopus 로고    scopus 로고
    • Jansen RK, Cai Z, Raubeson LA, et al. (16 co-authors). 2007. Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc Natl Acad Sci USA. 104:19369-19374.
    • Jansen RK, Cai Z, Raubeson LA, et al. (16 co-authors). 2007. Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Proc Natl Acad Sci USA. 104:19369-19374.
  • 26
    • 13444259388 scopus 로고    scopus 로고
    • TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics
    • Jobb G, von Haeseler A, Strimmer K. 2004. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol. 4:18.
    • (2004) BMC Evol Biol , vol.4 , pp. 18
    • Jobb, G.1    von Haeseler, A.2    Strimmer, K.3
  • 29
    • 34547781748 scopus 로고    scopus 로고
    • Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: Lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny
    • Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM. 2007. Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Mol Biol Evol. 24:1832-1842.
    • (2007) Mol Biol Evol , vol.24 , pp. 1832-1842
    • Khan, H.1    Parks, N.2    Kozera, C.3    Curtis, B.A.4    Parsons, B.J.5    Bowman, S.6    Archibald, J.M.7
  • 32
    • 11144274477 scopus 로고    scopus 로고
    • Pigment suites and taxonomic groups in Prasinophyceae
    • Latasa M, Scharek R, Le Gall F, Guillou L. 2004. Pigment suites and taxonomic groups in Prasinophyceae. J Phycol. 40:1149-1155.
    • (2004) J Phycol , vol.40 , pp. 1149-1155
    • Latasa, M.1    Scharek, R.2    Le Gall, F.3    Guillou, L.4
  • 33
    • 0034628462 scopus 로고    scopus 로고
    • Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution
    • Lemieux C, Otis C, Turmel M. 2000. Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution. Nature. 403:649-652.
    • (2000) Nature , vol.403 , pp. 649-652
    • Lemieux, C.1    Otis, C.2    Turmel, M.3
  • 34
    • 33846849230 scopus 로고    scopus 로고
    • A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies
    • Lemieux C, Otis C, Turmel M. 2007. A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies. BMC Biol. 5:2.
    • (2007) BMC Biol , vol.5 , pp. 2
    • Lemieux, C.1    Otis, C.2    Turmel, M.3
  • 35
    • 17644368841 scopus 로고    scopus 로고
    • Green algae and the origin of land plants
    • Lewis LA, McCourt RM. 2004. Green algae and the origin of land plants. Am J Bot. 91:1535-1556.
    • (2004) Am J Bot , vol.91 , pp. 1535-1556
    • Lewis, L.A.1    McCourt, R.M.2
  • 36
    • 0035865936 scopus 로고    scopus 로고
    • Rapid evolution of the DNA-binding site in LAGLIDADG homing endonucleases
    • Lucas P, Otis C, Mercier J-P, Turmel M, Lemieux C. 2001. Rapid evolution of the DNA-binding site in LAGLIDADG homing endonucleases. Nucleic Acids Res. 29:960-969.
    • (2001) Nucleic Acids Res , vol.29 , pp. 960-969
    • Lucas, P.1    Otis, C.2    Mercier, J.-P.3    Turmel, M.4    Lemieux, C.5
  • 38
    • 60149108445 scopus 로고
    • Electron microscopical observations on a clone of Monomastix Scherffel in culture
    • Manton I. 1967. Electron microscopical observations on a clone of Monomastix Scherffel in culture. Nova Hedwigia. 14:1-11.
    • (1967) Nova Hedwigia , vol.14 , pp. 1-11
    • Manton, I.1
  • 39
    • 0033381389 scopus 로고    scopus 로고
    • Mesostigmatophyceae, a new class of streptophyte green algae revealed by SSU rRNA sequence comparisons
    • Marin B, Melkonian M. 1999. Mesostigmatophyceae, a new class of streptophyte green algae revealed by SSU rRNA sequence comparisons. Protist. 150:399-417.
    • (1999) Protist , vol.150 , pp. 399-417
    • Marin, B.1    Melkonian, M.2
  • 40
    • 0002980248 scopus 로고
    • Classification of the green algae: A concept based on comparative cytology
    • Irvine DEG, John DM, editors, London: Academic Press. p
    • Mattox KR, Stewart KD. 1984. Classification of the green algae: a concept based on comparative cytology. In: Irvine DEG, John DM, editors. The systematics of the green algae. London: Academic Press. p. 29-72.
    • (1984) The systematics of the green algae , pp. 29-72
    • Mattox, K.R.1    Stewart, K.D.2
  • 42
    • 0040548674 scopus 로고
    • A biochemical and ultrastructural evaluation of the taxonomic position of Glaucosphaera vacuolata Korsch
    • McCracken DA, Nadakavukaren MJ, Cain JR. 1980. A biochemical and ultrastructural evaluation of the taxonomic position of Glaucosphaera vacuolata Korsch. New Phytol. 86:39-44.
    • (1980) New Phytol , vol.86 , pp. 39-44
    • McCracken, D.A.1    Nadakavukaren, M.J.2    Cain, J.R.3
  • 43
    • 0001884671 scopus 로고
    • Flagellar apparatus ultrastructure in relation to green algal classification
    • Irvine DEG, John DM, editors, London: Academic Press. p
    • Melkonian M. 1984. Flagellar apparatus ultrastructure in relation to green algal classification. In: Irvine DEG, John DM, editors. The systematics of the green algae. London: Academic Press. p. 73-120.
    • (1984) The systematics of the green algae , pp. 73-120
    • Melkonian, M.1
  • 44
    • 60149089761 scopus 로고    scopus 로고
    • Melkonian M. 1990. Phylum Chlorophyta. Class Prasinophyceae. In: Margulis L, Corliss JO, Melkonian M, Chapman DJ, editors. Handbook of protoctista. The structure, cultivation, habitats and life histories of the eukaryotic microorganisms and their descendants exclusive of animals, plants and fungi. Boston: Jones and Bartlett Publishers. p. 600-607.
    • Melkonian M. 1990. Phylum Chlorophyta. Class Prasinophyceae. In: Margulis L, Corliss JO, Melkonian M, Chapman DJ, editors. Handbook of protoctista. The structure, cultivation, habitats and life histories of the eukaryotic microorganisms and their descendants exclusive of animals, plants and fungi. Boston: Jones and Bartlett Publishers. p. 600-607.
  • 45
    • 0024428420 scopus 로고
    • Comparative and functional anatomy of group II catalytic introns - a review
    • Michel F, Umesono K, Ozeki H. 1989. Comparative and functional anatomy of group II catalytic introns - a review. Gene. 82:5-30.
    • (1989) Gene , vol.82 , pp. 5-30
    • Michel, F.1    Umesono, K.2    Ozeki, H.3
  • 46
    • 0025678737 scopus 로고
    • Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • Michel F, Westhof E. 1990. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol. 216:585-610.
    • (1990) J Mol Biol , vol.216 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 47
    • 20444463580 scopus 로고    scopus 로고
    • Ultrastructural studies on Cymbomonas tetramitiformis (Prasinophyceae). I. General structure, scale microstructure, and ontogeny
    • Moestrup O, Inouye I, Hori T. 2003. Ultrastructural studies on Cymbomonas tetramitiformis (Prasinophyceae). I. General structure, scale microstructure, and ontogeny. Can J Bot. 81:657-671.
    • (2003) Can J Bot , vol.81 , pp. 657-671
    • Moestrup, O.1    Inouye, I.2    Hori, T.3
  • 48
    • 0016255084 scopus 로고
    • An ultrastructural study of the flagellate Pyramimonas orientalis with particular emphasis on golgi apparatus activity and the flagellar apparatus
    • Moestrup O, Thomsen HA. 1974. An ultrastructural study of the flagellate Pyramimonas orientalis with particular emphasis on golgi apparatus activity and the flagellar apparatus. Protoplasma. 81:247-269.
    • (1974) Protoplasma , vol.81 , pp. 247-269
    • Moestrup, O.1    Thomsen, H.A.2
  • 49
    • 0001673417 scopus 로고
    • Light and electron microscopical studies on Pseudoscourfieldia marina a primitive scaly green flagellate prasinophyceae with posterior flagella
    • Moestrup O, Throndsen J. 1988. Light and electron microscopical studies on Pseudoscourfieldia marina a primitive scaly green flagellate prasinophyceae with posterior flagella. Can J Bot. 66:1415-1434.
    • (1988) Can J Bot , vol.66 , pp. 1415-1434
    • Moestrup, O.1    Throndsen, J.2
  • 50
    • 0032423364 scopus 로고    scopus 로고
    • The basal position of scaly green flagellates among the green algae (Chlorophyta) is revealed by analyses of nuclear-encoded SSU rRNA sequences
    • Nakayama T, Marin B, Kranz HD, Surek B, Huss VAR, Inouye I, Melkonian M. 1998. The basal position of scaly green flagellates among the green algae (Chlorophyta) is revealed by analyses of nuclear-encoded SSU rRNA sequences. Protist. 149:367-380.
    • (1998) Protist , vol.149 , pp. 367-380
    • Nakayama, T.1    Marin, B.2    Kranz, H.D.3    Surek, B.4    Huss, V.A.R.5    Inouye, I.6    Melkonian, M.7
  • 51
    • 36148986480 scopus 로고    scopus 로고
    • Phylogeny and ultrastructure of Nephroselmis and Pseudoscourfieldia (Chlorophyta), including the description of Nephroselmis anterostigmatica sp. nov. and a proposal for the Nephroselmidales ord. nov
    • Nakayama T, Suda S, Kawachi M, Inouye I. 2007. Phylogeny and ultrastructure of Nephroselmis and Pseudoscourfieldia (Chlorophyta), including the description of Nephroselmis anterostigmatica sp. nov. and a proposal for the Nephroselmidales ord. nov. Phycologia. 46:680-697.
    • (2007) Phycologia , vol.46 , pp. 680-697
    • Nakayama, T.1    Suda, S.2    Kawachi, M.3    Inouye, I.4
  • 52
    • 0005591212 scopus 로고
    • Flagellar apparatus architecture and the phylogeny of "green algae": Chlorophytes, euglenoids, glaucophytes
    • Menzel D, editor, Boca Raton: CRC Press. p
    • O'Kelly CJ. 1992. Flagellar apparatus architecture and the phylogeny of "green algae": chlorophytes, euglenoids, glaucophytes. In: Menzel D, editor. The cytoskeleton of the algae. Boca Raton: CRC Press. p. 315-345.
    • (1992) The cytoskeleton of the algae , pp. 315-345
    • O'Kelly, C.J.1
  • 53
    • 3042625932 scopus 로고    scopus 로고
    • A horizontally acquired group II intron in the chloroplast psbA gene of a psychrophilic Chlamydomonas: In vitro self-splicing and genetic evidence formaturase activity
    • Odom OW, Shenkenberg DL, Garcia JA, Herrin DL. 2004. A horizontally acquired group II intron in the chloroplast psbA gene of a psychrophilic Chlamydomonas: in vitro self-splicing and genetic evidence formaturase activity. RNA. 10:1097-1107.
    • (2004) RNA , vol.10 , pp. 1097-1107
    • Odom, O.W.1    Shenkenberg, D.L.2    Garcia, J.A.3    Herrin, D.L.4
  • 54
    • 33947414878 scopus 로고    scopus 로고
    • Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: Comparison with other plastid genomes of the red lineage
    • Oudot-Le Secq M-P, Grimwood J, Shapiro H, Armbrust EV, Bowler C, Green BR. 2007. Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage. Mol Genet Genomics. 277:427-439.
    • (2007) Mol Genet Genomics , vol.277 , pp. 427-439
    • Oudot-Le Secq, M.-P.1    Grimwood, J.2    Shapiro, H.3    Armbrust, E.V.4    Bowler, C.5    Green, B.R.6
  • 55
    • 34250689932 scopus 로고    scopus 로고
    • The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
    • Palenik B, Grimwood J, Aerts A, et al. 2007. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci USA. 104:7705-7710.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 7705-7710
    • Palenik, B.1    Grimwood, J.2    Aerts, A.3
  • 56
    • 0001856419 scopus 로고
    • Plastid chromosomes: Structure and evolution
    • Bogorad L, Vasil K, editors, San Diego: Academic Press. p
    • Palmer JD. 1991. Plastid chromosomes: structure and evolution. In: Bogorad L, Vasil K, editors. The molecular biology of plastids. San Diego: Academic Press. p. 5-53.
    • (1991) The molecular biology of plastids , pp. 5-53
    • Palmer, J.D.1
  • 57
    • 33644938217 scopus 로고    scopus 로고
    • The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes
    • Pombert J-F, Lemieux C, Turmel M. 2006. The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes. BMC Biol. 4:3.
    • (2006) BMC Biol , vol.4 , pp. 3
    • Pombert, J.-F.1    Lemieux, C.2    Turmel, M.3
  • 58
    • 23944523620 scopus 로고    scopus 로고
    • The chloroplast genome sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) reveals unusual structural features and new insights into the branching order of chlorophyte lineages
    • Pombert J-F, Otis C, Lemieux C, Turmel M. 2005. The chloroplast genome sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) reveals unusual structural features and new insights into the branching order of chlorophyte lineages. Mol Biol Evol. 22:1903-1918.
    • (2005) Mol Biol Evol , vol.22 , pp. 1903-1918
    • Pombert, J.-F.1    Otis, C.2    Lemieux, C.3    Turmel, M.4
  • 59
    • 78649843153 scopus 로고    scopus 로고
    • Systematics of the green algae: Conflict of classic and modern approaches
    • Brodie J, Lewis J, editors, Boca Raton: CRC Press, Taylor & Francis. p
    • Proschold T, Leliaert F. 2007. Systematics of the green algae: conflict of classic and modern approaches. In: Brodie J, Lewis J, editors. Unravelling the algae: the past, present, and future of algal systematics. Boca Raton: CRC Press, Taylor & Francis. p. 123-153.
    • (2007) Unravelling the algae: The past, present, and future of algal systematics , pp. 123-153
    • Proschold, T.1    Leliaert, F.2
  • 60
    • 33750303564 scopus 로고    scopus 로고
    • Qiu YL, Li LB, Wang B, et al. (21 co-authors). 2006. The deepest divergences in land plants inferred from phylogenomic evidence. Proc Natl Acad Sci USA. 103:15511-15516.
    • Qiu YL, Li LB, Wang B, et al. (21 co-authors). 2006. The deepest divergences in land plants inferred from phylogenomic evidence. Proc Natl Acad Sci USA. 103:15511-15516.
  • 62
    • 34047227131 scopus 로고    scopus 로고
    • The complete chloroplast and mitochondrial DNA sequence of Ostreococcus tauri: Organelle genomes of the smallest eukaryote are examples of compaction
    • Robbens S, Derelle E, Ferraz C, Wuyts J, Moreau H, Van de Peer Y. 2007. The complete chloroplast and mitochondrial DNA sequence of Ostreococcus tauri: organelle genomes of the smallest eukaryote are examples of compaction. Mol Biol Evol. 24:956-968.
    • (2007) Mol Biol Evol , vol.24 , pp. 956-968
    • Robbens, S.1    Derelle, E.2    Ferraz, C.3    Wuyts, J.4    Moreau, H.5    Van de Peer, Y.6
  • 63
    • 33847637949 scopus 로고    scopus 로고
    • Phylogenetic analyses of nuclear, mitochondrial, and plastid multigene data sets support the placement of Mesostigma in the Streptophyta
    • Rodriguez-Ezpeleta N, Philippe H, Brinkmann H, Becker B, Melkonian M. 2007. Phylogenetic analyses of nuclear, mitochondrial, and plastid multigene data sets support the placement of Mesostigma in the Streptophyta. Mol Biol Evol. 24:723-731.
    • (2007) Mol Biol Evol , vol.24 , pp. 723-731
    • Rodriguez-Ezpeleta, N.1    Philippe, H.2    Brinkmann, H.3    Becker, B.4    Melkonian, M.5
  • 64
    • 38849159102 scopus 로고    scopus 로고
    • Superwobbling facilitates translation with reduced tRNA sets
    • Rogalski M, Karcher D, Bock R. 2008. Superwobbling facilitates translation with reduced tRNA sets. Nat Struct Mol Biol. 15:192-198.
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 192-198
    • Rogalski, M.1    Karcher, D.2    Bock, R.3
  • 65
    • 33845891330 scopus 로고    scopus 로고
    • The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: Evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts
    • Rogers MB, Gilson PR, Su V, McFadden GI, Keeling PJ. 2007. The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts. Mol Biol Evol. 24:54-62.
    • (2007) Mol Biol Evol , vol.24 , pp. 54-62
    • Rogers, M.B.1    Gilson, P.R.2    Su, V.3    McFadden, G.I.4    Keeling, P.J.5
  • 66
    • 33749334992 scopus 로고    scopus 로고
    • Genomics and the tree of life
    • Rokas A. 2006. Genomics and the tree of life. Science. 313:1897-1899.
    • (2006) Science , vol.313 , pp. 1897-1899
    • Rokas, A.1
  • 67
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 68
    • 0035950929 scopus 로고    scopus 로고
    • Isolation and characterization of two viruses with large genome size infecting Chrysochromulina ericina (Prymnesiophyceae) and Pyramimonas orientalis (Prasinophyceae)
    • Sandaa RA, Heldal M, Castberg T, Thyrhaug R, Bratbak G. 2001. Isolation and characterization of two viruses with large genome size infecting Chrysochromulina ericina (Prymnesiophyceae) and Pyramimonas orientalis (Prasinophyceae). Virology. 290:272-280.
    • (2001) Virology , vol.290 , pp. 272-280
    • Sandaa, R.A.1    Heldal, M.2    Castberg, T.3    Thyrhaug, R.4    Bratbak, G.5
  • 69
    • 1342263796 scopus 로고    scopus 로고
    • Recent horizontal intron transfer to a chloroplast genome
    • Sheveleva EV, Hallick RB. 2004. Recent horizontal intron transfer to a chloroplast genome. Nucleic Acids Res. 32:803-810.
    • (2004) Nucleic Acids Res , vol.32 , pp. 803-810
    • Sheveleva, E.V.1    Hallick, R.B.2
  • 70
    • 0028133871 scopus 로고
    • Prasinophytes form independent lineages within the Chlorophyta: Evidence from ribosomal RNA sequence comparisons
    • Steinkotter J, Bhattacharya D, Semmelroth I, Bibeau C, Melkonian M. 1994. Prasinophytes form independent lineages within the Chlorophyta: evidence from ribosomal RNA sequence comparisons. J Phycol. 30:340-345.
    • (1994) J Phycol , vol.30 , pp. 340-345
    • Steinkotter, J.1    Bhattacharya, D.2    Semmelroth, I.3    Bibeau, C.4    Melkonian, M.5
  • 71
    • 60149098968 scopus 로고    scopus 로고
    • Swofford DL. 2003. PAUP*. Phylogenetic analysis using parsimony (*and other methods, Version 4. Sunderland MA, Sinauer Associates
    • Swofford DL. 2003. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sunderland (MA): Sinauer Associates.
  • 72
    • 0000624211 scopus 로고
    • The class Prasinophyceae
    • Round FE, Chapman DJ, editors, Bristol: Biopress Ltd. p
    • Sym SD, Pienaar RN. 1993. The class Prasinophyceae. In: Round FE, Chapman DJ, editors. Progress in phycological research. Bristol: Biopress Ltd. p. 281-376.
    • (1993) Progress in phycological research , pp. 281-376
    • Sym, S.D.1    Pienaar, R.N.2
  • 73
    • 36849080234 scopus 로고    scopus 로고
    • Origins of the secondary plastids of Euglenophyta and Chlorarachniophyta as revealed by an analysis of the plastid-targeting, nuclear-encoded gene psbO
    • Takahashi F, Okabe Y, Nakada T, Sekimoto H, Ito M, Kataoka H, Nozaki H. 2007. Origins of the secondary plastids of Euglenophyta and Chlorarachniophyta as revealed by an analysis of the plastid-targeting, nuclear-encoded gene psbO. J Phycol. 43:1302-1309.
    • (2007) J Phycol , vol.43 , pp. 1302-1309
    • Takahashi, F.1    Okabe, Y.2    Nakada, T.3    Sekimoto, H.4    Ito, M.5    Kataoka, H.6    Nozaki, H.7
  • 74
    • 60149093181 scopus 로고    scopus 로고
    • A decade of euglenoid molecular phylogenetics
    • Brodie J, Lewis J, editors, Boca Raton: CRC Press, Taylor & Francis. p
    • Triemer R, Farmer M. 2007. A decade of euglenoid molecular phylogenetics. In: Brodie J, Lewis J, editors. Unravelling the algae: the past, present, and future of algal systematics. Boca Raton: CRC Press, Taylor & Francis. p. 315-330.
    • (2007) Unravelling the algae: The past, present, and future of algal systematics , pp. 315-330
    • Triemer, R.1    Farmer, M.2
  • 75
    • 44349111714 scopus 로고    scopus 로고
    • Deep division in the Chlorophyceae (Chlorophyta) revealed by chloroplast phylogenomic analyses
    • Turmel M, Brouard JS, Gagnon C, Otis C, Lemieux C. 2008. Deep division in the Chlorophyceae (Chlorophyta) revealed by chloroplast phylogenomic analyses. J Phycol. 44:739-750.
    • (2008) J Phycol , vol.44 , pp. 739-750
    • Turmel, M.1    Brouard, J.S.2    Gagnon, C.3    Otis, C.4    Lemieux, C.5
  • 76
    • 0033197514 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor: Two radically different evolutionary patterns within green algae
    • Turmel M, Lemieux C, Burger G, Lang BF, Otis C, Plante I, Gray MW. 1999a. The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor: two radically different evolutionary patterns within green algae. Plant Cell. 11:1717-1729.
    • (1999) Plant Cell , vol.11 , pp. 1717-1729
    • Turmel, M.1    Lemieux, C.2    Burger, G.3    Lang, B.F.4    Otis, C.5    Plante, I.6    Gray, M.W.7
  • 77
    • 0033621040 scopus 로고    scopus 로고
    • The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: Insights into the architecture of ancestral chloroplast genomes
    • Turmel M, Otis C, Lemieux C. 1999b. The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes. Proc Natl Acad Sci USA. 96:10248-10253.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 10248-10253
    • Turmel, M.1    Otis, C.2    Lemieux, C.3
  • 78
    • 27744492579 scopus 로고    scopus 로고
    • The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales
    • Turmel M, Otis C, Lemieux C. 2005. The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales. BMC Biol. 3:22.
    • (2005) BMC Biol , vol.3 , pp. 22
    • Turmel, M.1    Otis, C.2    Lemieux, C.3
  • 79
    • 33646890404 scopus 로고    scopus 로고
    • The chloroplast genome sequence of Chara vulgaris sheds newlight into the closest green algal relatives of land plants
    • Turmel M, Otis C, Lemieux C. 2006. The chloroplast genome sequence of Chara vulgaris sheds newlight into the closest green algal relatives of land plants. Mol Biol Evol. 23:1324-1338.
    • (2006) Mol Biol Evol , vol.23 , pp. 1324-1338
    • Turmel, M.1    Otis, C.2    Lemieux, C.3
  • 80
    • 12644284525 scopus 로고    scopus 로고
    • Wakasugi T, Nagai T, Kapoor M, et al. (15 co-authors). 1997. Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: the existence of genes possibly involved in chloroplast division. Proc Natl Acad Sci USA. 94:5967-5972.
    • Wakasugi T, Nagai T, Kapoor M, et al. (15 co-authors). 1997. Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: the existence of genes possibly involved in chloroplast division. Proc Natl Acad Sci USA. 94:5967-5972.
  • 81
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors, San Diego: Academic Press. p
    • White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR protocols: a guide to methods and applications. San Diego: Academic Press. p. 315-322.
    • (1990) PCR protocols: A guide to methods and applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 82
    • 21144458976 scopus 로고    scopus 로고
    • The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae)
    • Wolf PG, Karol KG, Mandoli DF, et al. 2005. The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae). Gene. 350:117-128.
    • (2005) Gene , vol.350 , pp. 117-128
    • Wolf, P.G.1    Karol, K.G.2    Mandoli, D.F.3


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