메뉴 건너뛰기




Volumn 56, Issue 6, 2006, Pages 1439-1447

Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra

Author keywords

[No Author keywords available]

Indexed keywords

PROTOZOAL PROTEIN;

EID: 33745323234     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64061-0     Document Type: Article
Times cited : (28)

References (51)
  • 1
    • 0036843244 scopus 로고    scopus 로고
    • Recycled plastids: A 'green movement' in eukaryotic evolution
    • Archibald, J. M. & Keeling, P. J. (2002). Recycled plastids: a 'green movement' in eukaryotic evolution. Trends Genet 18, 577-584.
    • (2002) Trends Genet , vol.18 , pp. 577-584
    • Archibald, J.M.1    Keeling, P.J.2
  • 2
    • 0038714278 scopus 로고    scopus 로고
    • Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans
    • Archibald, J. M., Rogers, M. B., Toop, M., Ishida, K. & Keeling, P. J. (2003). Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. Proc Natl Acad Sci U S A 100, 7678-7683.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 7678-7683
    • Archibald, J.M.1    Rogers, M.B.2    Toop, M.3    Ishida, K.4    Keeling, P.J.5
  • 3
    • 6044252163 scopus 로고    scopus 로고
    • The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism
    • & 42 other authors
    • Armbrust, E. V., Berges, J. A., Bowler, C. & 42 other authors (2004). The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 306, 79-86.
    • (2004) Science , vol.306 , pp. 79-86
    • Armbrust, E.V.1    Berges, J.A.2    Bowler, C.3
  • 4
    • 1942444640 scopus 로고    scopus 로고
    • Dinoflagellate expressed sequence tags data indicate massive transfer of chloroplast genes to the nuclear genome
    • Bachvaroff, T. R., Concepcion, G. T., Rogers, C. R., Herman, E. M. & Delwiche, C. F. (2004). Dinoflagellate expressed sequence tags data indicate massive transfer of chloroplast genes to the nuclear genome. Protist 155, 65-78.
    • (2004) Protist , vol.155 , pp. 65-78
    • Bachvaroff, T.R.1    Concepcion, G.T.2    Rogers, C.R.3    Herman, E.M.4    Delwiche, C.F.5
  • 5
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf, S. L., Roger, A. J., Wenk-Siefert, I. & Doolittle, W. F. (2000). A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290, 972-977.
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 6
    • 19044379861 scopus 로고    scopus 로고
    • Comparative genomics of two closely related unicellular thermoacidophilic red algae, Galdieria sulphuraria and Cyanidioschyzon merolae, reveals the molecular basis of the metabolic flexibility of Galdieria sulphuraria and significant differences in carbohydrate metabolism of both algae
    • Barbier, G., Oesterhelt, C., Larson, M. D., Halgren, R. G., Wilkerson, C., Garavito, R. M., Banning, C. & Weber, A. P. (2005). Comparative genomics of two closely related unicellular thermoacidophilic red algae, Galdieria sulphuraria and Cyanidioschyzon merolae, reveals the molecular basis of the metabolic flexibility of Galdieria sulphuraria and significant differences in carbohydrate metabolism of both algae. Plant Physiol 137, 460-474.
    • (2005) Plant Physiol , vol.137 , pp. 460-474
    • Barbier, G.1    Oesterhelt, C.2    Larson, M.D.3    Halgren, R.G.4    Wilkerson, C.5    Garavito, R.M.6    Banning, C.7    Weber, A.P.8
  • 7
    • 0033167106 scopus 로고    scopus 로고
    • The non-photosynthetic plastid in malarial parasites and other apicomplexans is derived from outside the green plastid lineage
    • Blanchard, J. L. & Hicks, J. S. (1999). The non-photosynthetic plastid in malarial parasites and other apicomplexans is derived from outside the green plastid lineage. J Eukaryot Microbiol 46, 367-375.
    • (1999) J Eukaryot Microbiol , vol.46 , pp. 367-375
    • Blanchard, J.L.1    Hicks, J.S.2
  • 8
    • 0033984609 scopus 로고    scopus 로고
    • Weighted neighbor joining: A likelihood-based approach to distance-based phylogeny reconstruction
    • Bruno, W. J., Socci, N. D. & Halpern, A. L. (2000). Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction. Mol Biol Evol 17, 189-197.
    • (2000) Mol Biol Evol , vol.17 , pp. 189-197
    • Bruno, W.J.1    Socci, N.D.2    Halpern, A.L.3
  • 9
    • 0242493260 scopus 로고    scopus 로고
    • Apicoplast genome of the coccidian Eimeria tenella
    • Cai, X., Fuller, A. L., McDougald, L. R. & Zhu, G. (2003). Apicoplast genome of the coccidian Eimeria tenella. Gene 321, 39-46.
    • (2003) Gene , vol.321 , pp. 39-46
    • Cai, X.1    Fuller, A.L.2    McDougald, L.R.3    Zhu, G.4
  • 10
    • 0031663016 scopus 로고    scopus 로고
    • A revised six-kingdom system of life
    • Cavalier-Smith, T. (1998). A revised six-kingdom system of life. Biol Rev Camb Philos Soc 73, 203-266.
    • (1998) Biol Rev Camb Philos Soc , vol.73 , pp. 203-266
    • Cavalier-Smith, T.1
  • 11
    • 0032727696 scopus 로고    scopus 로고
    • Tracing the thread of plastid diversity through the tapestry of life
    • Delwiche, C. F. (1999). Tracing the thread of plastid diversity through the tapestry of life. Am Nat 154 (Suppl. 4), S164-S177.
    • (1999) Am Nat , vol.154 , Issue.SUPPL. 4
    • Delwiche, C.F.1
  • 12
    • 0035103466 scopus 로고    scopus 로고
    • Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids
    • Fast, N. M., Kissinger, J. C., Roos, D. S. & Keeling, P. J. (2001). Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids. Mol Biol Evol 18, 418-426.
    • (2001) Mol Biol Evol , vol.18 , pp. 418-426
    • Fast, N.M.1    Kissinger, J.C.2    Roos, D.S.3    Keeling, P.J.4
  • 13
    • 0036124759 scopus 로고    scopus 로고
    • Re-examining alveolate evolution using multiple protein molecular phylogenies
    • Fast, N. M., Xue, L., Bingham, S. & Keeling, P. J. (2002). Re-examining alveolate evolution using multiple protein molecular phylogenies. J Eukaryot Microbiol 49, 30-37.
    • (2002) J Eukaryot Microbiol , vol.49 , pp. 30-37
    • Fast, N.M.1    Xue, L.2    Bingham, S.3    Keeling, P.J.4
  • 15
    • 0026017244 scopus 로고
    • Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates
    • Gajadhar, A. A., Marquardt, W. C., Hall, R., Gunderson, J., Ariztia-Carmona, E. V. & Sogin, M. L. (1991). Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates. Mol Biochem Parasitol 45, 147-154.
    • (1991) Mol Biochem Parasitol , vol.45 , pp. 147-154
    • Gajadhar, A.A.1    Marquardt, W.C.2    Hall, R.3    Gunderson, J.4    Ariztia-Carmona, E.V.5    Sogin, M.L.6
  • 16
    • 0027200066 scopus 로고
    • Phylogenetic position of the genus Perkinsus (Protista, Apicomplexa) based on small subunit ribosomal RNA
    • Goggin, C. L. & Barker, S. C. (1993). Phylogenetic position of the genus Perkinsus (Protista, Apicomplexa) based on small subunit ribosomal RNA. Mol Biochem Parasitol 60, 65-70.
    • (1993) Mol Biochem Parasitol , vol.60 , pp. 65-70
    • Goggin, C.L.1    Barker, S.C.2
  • 17
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 18
    • 0242584809 scopus 로고    scopus 로고
    • Phylogenetic evidence for the cryptophyte origin of the plastid of Dinophysis (Dinophysiales, Dinophyceae)
    • Hackett, J. D., Maranda, L., Yoon, H. S. & Bhattacharya, D. (2003). Phylogenetic evidence for the cryptophyte origin of the plastid of Dinophysis (Dinophysiales, Dinophyceae). J Phycol 39, 440-448.
    • (2003) J Phycol , vol.39 , pp. 440-448
    • Hackett, J.D.1    Maranda, L.2    Yoon, H.S.3    Bhattacharya, D.4
  • 20
    • 17644425978 scopus 로고    scopus 로고
    • Dinoflagellates: A remarkable evolutionary experiment
    • Hackett, J. D., Anderson, D. M., Erdner, D. L. & Bhattacharya, D. (2004b). Dinoflagellates: a remarkable evolutionary experiment. Am J Bot 91, 1523-1534.
    • (2004) Am J Bot , vol.91 , pp. 1523-1534
    • Hackett, J.D.1    Anderson, D.M.2    Erdner, D.L.3    Bhattacharya, D.4
  • 21
    • 0344440735 scopus 로고    scopus 로고
    • Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids
    • Harper, J. T. & Keeling, P. J. (2003). Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. Mol Biol Evol 20, 1730-1735.
    • (2003) Mol Biol Evol , vol.20 , pp. 1730-1735
    • Harper, J.T.1    Keeling, P.J.2
  • 22
    • 13244270095 scopus 로고    scopus 로고
    • On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes
    • Harper, J. T., Waanders, E. & Keeling, P. J. (2005). On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes. Int J Syst Evol Microbiol 55, 487-496.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 487-496
    • Harper, J.T.1    Waanders, E.2    Keeling, P.J.3
  • 23
    • 0028920225 scopus 로고
    • The light-harvesting chlorophyll a-c-binding protein of dinoflagellates: A putative polyprotein
    • Hiller, R. G., Wrench, P. M. & Sharpies, F. P. (1995). The light-harvesting chlorophyll a-c-binding protein of dinoflagellates: a putative polyprotein. FEBS Lett 363, 175-178.
    • (1995) FEBS Lett , vol.363 , pp. 175-178
    • Hiller, R.G.1    Wrench, P.M.2    Sharpies, F.P.3
  • 24
    • 0037047078 scopus 로고    scopus 로고
    • Second- and third-hand chloroplasts in dinoflagellates: Phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont
    • Ishida, K. & Green, B. R. (2002). Second- and third-hand chloroplasts in dinoflagellates: phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont. Proc Natl Acad Sci U S A 99, 9294-9299.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 9294-9299
    • Ishida, K.1    Green, B.R.2
  • 25
    • 0033520336 scopus 로고    scopus 로고
    • Inhibitors of the nonmevalonate pathway of isoprenoid biosynthesis as antimalarial drugs
    • & 9 other authors
    • Jomaa, H., Wiesner, J., Sanderbrand, S. & 9 other authors (1999). Inhibitors of the nonmevalonate pathway of isoprenoid biosynthesis as antimalarial drugs. Science 285, 1573-1576.
    • (1999) Science , vol.285 , pp. 1573-1576
    • Jomaa, H.1    Wiesner, J.2    Sanderbrand, S.3
  • 26
    • 13244259056 scopus 로고    scopus 로고
    • Diversity and evolutionary history of plastids and their hosts
    • Keeling, P. J. (2004). Diversity and evolutionary history of plastids and their hosts. Am J Bot 91, 1481-1493.
    • (2004) Am J Bot , vol.91 , pp. 1481-1493
    • Keeling, P.J.1
  • 28
    • 0036863450 scopus 로고    scopus 로고
    • The phylogeny of colpodellids (Alveolata) using small subunit rRNA gene sequences suggests they are the free-living sister group to apicomplexans
    • Kuvardina, O. N., Leander, B. S., Aleshin, V. V., Myl'nikov, A. P., Keeling, P. J. & Simdyanov, T. G. (2002). The phylogeny of colpodellids (Alveolata) using small subunit rRNA gene sequences suggests they are the free-living sister group to apicomplexans. J Eukaryot Microbiol 49, 498-504.
    • (2002) J Eukaryot Microbiol , vol.49 , pp. 498-504
    • Kuvardina, O.N.1    Leander, B.S.2    Aleshin, V.V.3    Myl'nikov, A.P.4    Keeling, P.J.5    Simdyanov, T.G.6
  • 29
    • 0042666874 scopus 로고    scopus 로고
    • Morphostasis in alveolate evolution
    • Leander, B. S. & Keeling, P. J. (2003). Morphostasis in alveolate evolution. Trends Ecol Evol 18, 395-402.
    • (2003) Trends Ecol Evol , vol.18 , pp. 395-402
    • Leander, B.S.1    Keeling, P.J.2
  • 30
    • 9344244721 scopus 로고    scopus 로고
    • Molecular evolution of dinoflagellate luciferases, enzymes with three catalytic domains in a single polypeptide
    • Liu, L., Wilson, T. & Hastings, J. W. (2004). Molecular evolution of dinoflagellate luciferases, enzymes with three catalytic domains in a single polypeptide. Proc Natl Acad Sci U S A 101, 16555-16560.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 16555-16560
    • Liu, L.1    Wilson, T.2    Hastings, J.W.3
  • 31
    • 11144354393 scopus 로고    scopus 로고
    • Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D
    • & 38 other authors
    • Matsuzaki, M., Misumi, O., Shin-i, T. & 38 other authors (2004). Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature 428, 653-657.
    • (2004) Nature , vol.428 , pp. 653-657
    • Matsuzaki, M.1    Misumi, O.2    Shin-i, T.3
  • 32
    • 0035689472 scopus 로고    scopus 로고
    • Primary and secondary endosymbiosis and the origin of plastids
    • McFadden, G. I. (2001). Primary and secondary endosymbiosis and the origin of plastids. J Phycol 37, 951-959.
    • (2001) J Phycol , vol.37 , pp. 951-959
    • McFadden, G.I.1
  • 33
    • 0031282142 scopus 로고    scopus 로고
    • Plastids in parasites of humans
    • McFadden, G. I. & Waller, R. F. (1997). Plastids in parasites of humans. Bioessays 19, 1033-1040.
    • (1997) Bioessays , vol.19 , pp. 1033-1040
    • McFadden, G.I.1    Waller, R.F.2
  • 34
    • 0041669431 scopus 로고    scopus 로고
    • Plastid ultra-structure defines the protein import pathway in dinoflagellates
    • Nassoury, N., Cappadocia, M. & Morse, D. (2003). Plastid ultra-structure defines the protein import pathway in dinoflagellates. J Cell Sci 116, 2867-2874.
    • (2003) J Cell Sci , vol.116 , pp. 2867-2874
    • Nassoury, N.1    Cappadocia, M.2    Morse, D.3
  • 35
    • 6344265521 scopus 로고    scopus 로고
    • Gene replacement of fructose-1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates
    • Patron, N. J., Rogers, M. B. & Keeling, P. J. (2004). Gene replacement of fructose-1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates. Eukaryot Cell 3, 1169-1175.
    • (2004) Eukaryot Cell , vol.3 , pp. 1169-1175
    • Patron, N.J.1    Rogers, M.B.2    Keeling, P.J.3
  • 36
    • 17544368557 scopus 로고    scopus 로고
    • Complex protein targeting to dinoflagellate plastids
    • Patron, N. J., Waller, R. F., Archibald, J. M. & Keeling, P. J. (2005). Complex protein targeting to dinoflagellate plastids. J Mol Biol 348, 1015-1024.
    • (2005) J Mol Biol , vol.348 , pp. 1015-1024
    • Patron, N.J.1    Waller, R.F.2    Archibald, J.M.3    Keeling, P.J.4
  • 37
    • 33645100385 scopus 로고    scopus 로고
    • A tertiary plastid uses genes from two endosymbionts
    • Patron, N. J., Waller, R. F. & Keeling, P. J. (2006). A tertiary plastid uses genes from two endosymbionts. J Mol Biol 357, 1373-1382.
    • (2006) J Mol Biol , vol.357 , pp. 1373-1382
    • Patron, N.J.1    Waller, R.F.2    Keeling, P.J.3
  • 39
    • 0030096623 scopus 로고    scopus 로고
    • Rubisco in marine symbiotic dinoflagellates: Form II enzymes in eukaryotic oxygenic phototrophs encoded by a nuclear multigene family
    • Rowan, R., Whitney, S. M., Fowler, A. & Yellowlees, D. (1996). Rubisco in marine symbiotic dinoflagellates: form II enzymes in eukaryotic oxygenic phototrophs encoded by a nuclear multigene family. Plant Cell 8, 539-553.
    • (1996) Plant Cell , vol.8 , pp. 539-553
    • Rowan, R.1    Whitney, S.M.2    Fowler, A.3    Yellowlees, D.4
  • 40
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt, H. A., Strimmer, K., Vingron, M. & von Haeseler, A. (2002). TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18, 502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 41
    • 27244455927 scopus 로고    scopus 로고
    • A transcriptional fusion of genes encoding glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and enolase in dinoflagellates
    • Takishita, K., Patron, N. J., Ishida, K., Maruyama, T. & Keeling, P. J. (2005). A transcriptional fusion of genes encoding glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and enolase in dinoflagellates. J Eukaryot Microbiol 52, 343-348.
    • (2005) J Eukaryot Microbiol , vol.52 , pp. 343-348
    • Takishita, K.1    Patron, N.J.2    Ishida, K.3    Maruyama, T.4    Keeling, P.J.5
  • 42
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 43
    • 0344549379 scopus 로고    scopus 로고
    • Nuclear-encoded proteins target to the plastid in Toxoplasma gondii and Plasmodium falciparum
    • & 7 other authors
    • Waller, R. F., Keeling, P. J., Donald, R. G. & 7 other authors (1998). Nuclear-encoded proteins target to the plastid in Toxoplasma gondii and Plasmodium falciparum. Proc Natl Acad Sci USA 95, 12352-12357.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 12352-12357
    • Waller, R.F.1    Keeling, P.J.2    Donald, R.G.3
  • 45
    • 0028951751 scopus 로고
    • Evidence that some dinoflagellates contain a ribulose-1,5-bisphosphate carboxylase/oxygenase related to that of the alpha-proteobacteria
    • Whitney, S. M., Shaw, D. C. & Yellowlees, D. (1995). Evidence that some dinoflagellates contain a ribulose-1,5-bisphosphate carboxylase/ oxygenase related to that of the alpha-proteobacteria. Proc Biol Sci 259, 271-275.
    • (1995) Proc Biol Sci , vol.259 , pp. 271-275
    • Whitney, S.M.1    Shaw, D.C.2    Yellowlees, D.3
  • 46
    • 0030590259 scopus 로고    scopus 로고
    • Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum
    • & 8 other authors
    • Wilson, I. R. J. M., Denny, P. W., Preiser, P. R. & 8 other authors (1996). Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum. J Mol Biol 261, 155-172.
    • (1996) J Mol Biol , vol.261 , pp. 155-172
    • Wilson, I.R.J.M.1    Denny, P.W.2    Preiser, P.R.3
  • 50
    • 0033536215 scopus 로고    scopus 로고
    • Single gene circles in dinoflagellate chloroplast genomes
    • Zhang, Z., Green, B. R. & Cavalier-Smith, T. (1999). Single gene circles in dinoflagellate chloroplast genomes. Nature 400, 155-159.
    • (1999) Nature , vol.400 , pp. 155-159
    • Zhang, Z.1    Green, B.R.2    Cavalier-Smith, T.3
  • 51
    • 0033929166 scopus 로고    scopus 로고
    • Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: A possible common origin for sporozoan and dinoflagellate plastids
    • Zhang, Z., Green, B. R. & Cavalier-Smith, T. (2000). Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: a possible common origin for sporozoan and dinoflagellate plastids. J Mol Evol 51, 26-40.
    • (2000) J Mol Evol , vol.51 , pp. 26-40
    • Zhang, Z.1    Green, B.R.2    Cavalier-Smith, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.