-
1
-
-
33644782643
-
The new higher level classification of eukaryotes with emphasis on the taxonomy of protists
-
Adl SM, et al. 2005. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J Eukaryot Microbiol. 52: 399-451.
-
(2005)
J Eukaryot Microbiol
, vol.52
, pp. 399-451
-
-
Adl, S.M.1
-
2
-
-
84867310470
-
The revised classification of eukaryotes
-
Adl SM, et al. 2012. The revised classification of eukaryotes. J Eukaryot Microbiol. 59: 429-493.
-
(2012)
J Eukaryot Microbiol
, vol.59
, pp. 429-493
-
-
Adl, S.M.1
-
3
-
-
70450251981
-
Genetic evidence that an endosymbiont-derived endoplasmic reticulum-associated protein degradation (ERAD) system functions in import of apicoplast proteins
-
Agrawal S, van Dooren GG, Beatty WL, Striepen B. 2009. Genetic evidence that an endosymbiont-derived endoplasmic reticulum-associated protein degradation (ERAD) system functions in import of apicoplast proteins. J Biol Chem. 284: 33683-33691.
-
(2009)
J Biol Chem
, vol.284
, pp. 33683-33691
-
-
Agrawal, S.1
Van Dooren, G.G.2
Beatty, W.L.3
Striepen, B.4
-
4
-
-
84862894116
-
Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms
-
Allen AE, et al. 2012. Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms. Mol Biol Evol. 29: 367-379.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 367-379
-
-
Allen, A.E.1
-
5
-
-
58349101981
-
The puzzle of plastid evolution
-
Archibald JM. 2009. The puzzle of plastid evolution. Curr Biol. 19: R81-R88.
-
(2009)
Curr Biol
, vol.19
-
-
Archibald, J.M.1
-
7
-
-
23944527127
-
Chlorophyll ccontaining plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages
-
Bachvaroff TR, Sanchez Puerta MV, Delwiche CF. 2005. Chlorophyll ccontaining plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages. Mol Biol Evol. 22: 1772-1782.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1772-1782
-
-
Bachvaroff, T.R.1
Sanchez Puerta, M.V.2
Delwiche, C.F.3
-
8
-
-
0037022379
-
The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba
-
Bapteste E, et al. 2002. The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba. Proc Natl Acad Sci U S A. 99: 1414-1419.
-
(2002)
Proc Natl Acad Sci U S A.
, vol.99
, pp. 1414-1419
-
-
Bapteste, E.1
-
9
-
-
77953749915
-
Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles
-
Baurain D, et al. 2010. Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles. Mol Biol Evol. 27: 1698-1709.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1698-1709
-
-
Baurain, D.1
-
10
-
-
20644433743
-
Do plastid-related characters support the chromalveolate hypothesis?
-
Bodył A. 2005. Do plastid-related characters support the chromalveolate hypothesis? J Phycol 41: 712-719.
-
(2005)
J Phycol
, vol.41
, pp. 712-719
-
-
Bodył, A.1
-
11
-
-
33845510737
-
Did the peridinin plastid evolve through tertiary endosymbioses? A hypothesis
-
Bodył A, Moszczyński K. 2006. Did the peridinin plastid evolve through tertiary endosymbioses? A hypothesis. Eur J Phycol. 41: 435-448.
-
(2006)
Eur J Phycol
, vol.41
, pp. 435-448
-
-
Bodył, A.1
Moszczyński, K.2
-
12
-
-
60949088852
-
Chromalveolate plastids: Direct descent or multiple endosymbioses?
-
Bodył A, Stiller JW, Mackiewicz P. 2009. Chromalveolate plastids: direct descent or multiple endosymbioses? Trends Ecol Evol. 24: 119-121.
-
(2009)
Trends Ecol Evol
, vol.24
, pp. 119-121
-
-
Bodył, A.1
Stiller, J.W.2
MacKiewicz, P.3
-
13
-
-
79951530130
-
Scaffolding pre-assembled contigs using SSPACE
-
Boetzer M, Henkel CV, Jansen HJ, Butler D, PirovanoW. 2011. Scaffolding pre-assembled contigs using SSPACE. Bioinformatics 27: 578-579.
-
(2011)
Bioinformatics
, vol.27
, pp. 578-579
-
-
Boetzer, M.1
Henkel, C.V.2
Jansen, H.J.3
Butler, D.4
Pirovano, W.5
-
14
-
-
79954779971
-
Making new out of old: Recycling and modification of an ancient protein translocation system during eukaryotic evolution. Mechanistic comparison and phylogenetic analysis of ERAD, SELMA and the peroxisomal importomer
-
Bolte K, et al. 2011. Making new out of old: recycling and modification of an ancient protein translocation system during eukaryotic evolution. Mechanistic comparison and phylogenetic analysis of ERAD, SELMA and the peroxisomal importomer. Bioessays 33: 368-376.
-
(2011)
Bioessays
, vol.33
, pp. 368-376
-
-
Bolte, K.1
-
15
-
-
27744524191
-
An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics
-
Brinkmann H, et al. 2005. An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. Syst Biol. 54: 743-757.
-
(2005)
Syst Biol
, vol.54
, pp. 743-757
-
-
Brinkmann, H.1
-
16
-
-
84859945474
-
The evolutionary history of haptophytes and cryptophytes: Phylogenomic evidence for separate origins
-
Burki F, Okamoto N, Pombert JF, Keeling PJ. 2012. The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins. Proc Biol Sci. 279: 2246-2254.
-
(2012)
Proc Biol Sci
, vol.279
, pp. 2246-2254
-
-
Burki, F.1
Okamoto, N.2
Pombert, J.F.3
Keeling, P.J.4
-
17
-
-
46949092431
-
Phylogenomics reveals a new 'megagroup' includingmost photosynthetic eukaryotes
-
Burki F, Shalchian-Tabrizi K, Pawlowski J. 2008. Phylogenomics reveals a new 'megagroup' includingmost photosynthetic eukaryotes. Biol Lett. 4: 366-369.
-
(2008)
Biol Lett
, vol.4
, pp. 366-369
-
-
Burki, F.1
Shalchian-Tabrizi, K.2
Pawlowski, J.3
-
18
-
-
0032838597
-
Principles of protein and lipid targeting in secondary symbiogenesis: Euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree
-
Cavalier-Smith T. 1999. Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J Eukaryot Microbiol. 46: 347-366.
-
(1999)
J Eukaryot Microbiol
, vol.46
, pp. 347-366
-
-
Cavalier-Smith, T.1
-
19
-
-
0031193622
-
Ribosomal RNA analysis indicates a benthic pennate diatom ancestry for the endosymbionts of the dinoflagellates Peridinium foliaceum and Peridinium balticum (Pyrrhophyta)
-
Chesnick JM, Kooistra WH, Wellbrock U, Medlin LK. 1997. Ribosomal RNA analysis indicates a benthic pennate diatom ancestry for the endosymbionts of the dinoflagellates Peridinium foliaceum and Peridinium balticum (Pyrrhophyta). J Eukaryot Microbiol. 44: 314-320.
-
(1997)
J Eukaryot Microbiol
, vol.44
, pp. 314-320
-
-
Chesnick, J.M.1
Kooistra, W.H.2
Wellbrock, U.3
Medlin, L.K.4
-
20
-
-
79958281553
-
Riboneogenesis in yeast
-
Clasquin MF, et al. 2011. Riboneogenesis in yeast. Cell 145: 969-980.
-
(2011)
Cell
, vol.145
, pp. 969-980
-
-
Clasquin, M.F.1
-
21
-
-
0027383390
-
Determinants of coenzyme specificity in glyceraldehyde- 3-phosphate dehydrogenase: Role of the acidic residue in the fingerprint region of the nucleotide binding fold
-
Clermont S, et al. 1993. Determinants of coenzyme specificity in glyceraldehyde- 3-phosphate dehydrogenase: role of the acidic residue in the fingerprint region of the nucleotide binding fold. Biochemistry 32: 10178-10184.
-
(1993)
Biochemistry
, vol.32
, pp. 10178-10184
-
-
Clermont, S.1
-
22
-
-
0032727696
-
Tracing the thread of plastid diversity through the tapestry of life
-
Delwiche CF. 1999. Tracing the thread of plastid diversity through the tapestry of life. Am Nat. 154:S164-S177.
-
(1999)
Am Nat
, vol.154
-
-
Delwiche, C.F.1
-
23
-
-
0029897169
-
Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids
-
Delwiche CF, Palmer JD. 1996. Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids. Mol Biol Evol. 13: 873-882.
-
(1996)
Mol Biol Evol
, vol.13
, pp. 873-882
-
-
Delwiche, C.F.1
Palmer, J.D.2
-
24
-
-
84866394866
-
Reevaluating the green contribution to diatom genomes
-
Deschamps P, Moreira D. 2012. Reevaluating the green contribution to diatom genomes. Genome Biol Evol. 4: 683-688.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 683-688
-
-
Deschamps, P.1
Moreira, D.2
-
25
-
-
84893753562
-
Evolution of chloroplast transcript processing in Plasmodium and its chromerid algal relatives
-
Dorrell RG, Drew J, Nisbet RE, Howe CJ. 2014. Evolution of chloroplast transcript processing in Plasmodium and its chromerid algal relatives. PLoS Genet. 10:e1004008.
-
(2014)
PLoS Genet
, vol.10
-
-
Dorrell, R.G.1
Drew, J.2
Nisbet, R.E.3
Howe, C.J.4
-
26
-
-
79960111189
-
Do red and green make brown?: Perspectives on plastid acquisitions within chromalveolates
-
Dorrell RG, Smith AG. 2011. Do red and green make brown?: perspectives on plastid acquisitions within chromalveolates. Eukaryot Cell. 10: 856-868.
-
(2011)
Eukaryot Cell
, vol.10
, pp. 856-868
-
-
Dorrell, R.G.1
Smith, A.G.2
-
27
-
-
0035953753
-
The highly reduced genome of an enslaved algal nucleus
-
Douglas S, et al. 2001. The highly reduced genome of an enslaved algal nucleus. Nature 410: 1091-1096.
-
(2001)
Nature
, vol.410
, pp. 1091-1096
-
-
Douglas, S.1
-
28
-
-
79954771065
-
ERAD components in organisms with complex red plastids suggest recruitment of a preexisting protein transport pathway for the periplastid membrane
-
Felsner G, et al. 2011. ERAD components in organisms with complex red plastids suggest recruitment of a preexisting protein transport pathway for the periplastid membrane. Genome Biol Evol. 3: 140-150.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 140-150
-
-
Felsner, G.1
-
29
-
-
80053385788
-
The search for the missing link: A relic plastid in Perkinsus?
-
Fernández Robledo JA, et al. 2011. The search for the missing link: a relic plastid in Perkinsus? Int J Parasitol. 41: 1217-1229.
-
(2011)
Int J Parasitol
, vol.41
, pp. 1217-1229
-
-
Fernández Robledo, J.A.1
-
30
-
-
56449118832
-
Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis
-
Frommolt R, et al. 2008. Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis. Mol Biol Evol. 25: 2653-2667.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 2653-2667
-
-
Frommolt, R.1
-
31
-
-
79955604863
-
Genome evolution of a tertiary dinoflagellate plastid
-
Gabrielsen TM, et al. 2011. Genome evolution of a tertiary dinoflagellate plastid. PLoS One 6:e19132.
-
(2011)
PLoS One
, vol.6
-
-
Gabrielsen, T.M.1
-
32
-
-
33745476746
-
Complete nucleotide sequence of the chlorarachniophyte nucleomorph: Nature's smallest nucleus
-
Gilson PR, et al. 2006. Complete nucleotide sequence of the chlorarachniophyte nucleomorph: nature's smallest nucleus. Proc Natl Acad Sci U S A. 103: 9566-9571.
-
(2006)
Proc Natl Acad Sci U S A.
, vol.103
, pp. 9566-9571
-
-
Gilson, P.R.1
-
34
-
-
33645874636
-
Dinoflagellates
-
Graham LE, editor. Upper Saddle River (NJ): Prentice-Hall
-
Graham LE, Wilcox LW. 2000. Dinoflagellates. In: Graham LE, editor. Algae. Upper Saddle River (NJ): Prentice-Hall. p. 198-231.
-
(2000)
Algae
, pp. 198-231
-
-
Graham, L.E.1
Wilcox, L.W.2
-
35
-
-
34249304461
-
Isoprenoid biosynthesis authenticates the classification of the green alga Mesostigma viride as an ancient streptophyte
-
Grauvogel C, Petersen J. 2007. Isoprenoid biosynthesis authenticates the classification of the green alga Mesostigma viride as an ancient streptophyte. Gene 396: 125-133.
-
(2007)
Gene
, vol.396
, pp. 125-133
-
-
Grauvogel, C.1
Petersen, J.2
-
36
-
-
37549066871
-
Plastid isoprenoid metabolism in the oyster parasite Perkinsus marinus connects dinoflagellates and malaria pathogens - New impetus for studying alveolates
-
Grauvogel C, Reece KS, Brinkmann H, Petersen J. 2007. Plastid isoprenoid metabolism in the oyster parasite Perkinsus marinus connects dinoflagellates and malaria pathogens - new impetus for studying alveolates. J Mol Evol. 65: 725-729.
-
(2007)
J Mol Evol
, vol.65
, pp. 725-729
-
-
Grauvogel, C.1
Reece, K.S.2
Brinkmann, H.3
Petersen, J.4
-
37
-
-
79551514620
-
After the primary endosymbiosis: An update on the chromalveolate hypothesis and the origins of algae with Chl c
-
Green BR. 2011. After the primary endosymbiosis: an update on the chromalveolate hypothesis and the origins of algae with Chl c. Photosynth Res. 107: 103-115.
-
(2011)
Photosynth Res
, vol.107
, pp. 103-115
-
-
Green, B.R.1
-
38
-
-
34250179494
-
Protein targeting into complex diatom plastids: Functional characterisation of a specific targeting motif
-
Gruber A, et al. 2007. Protein targeting into complex diatom plastids: functional characterisation of a specific targeting motif. Plant Mol Biol. 64: 519-530.
-
(2007)
Plant Mol Biol
, vol.64
, pp. 519-530
-
-
Gruber, A.1
-
39
-
-
0037388327
-
The mesozoic radiation of eukaryotic algae: The portable plastid hypothesis
-
Grzebyk D, Schofield O, Vetriani C, Falkowski PG. 2003. The mesozoic radiation of eukaryotic algae: the portable plastid hypothesis. J Phycol. 39: 259-267.
-
(2003)
J Phycol
, vol.39
, pp. 259-267
-
-
Grzebyk, D.1
Schofield, O.2
Vetriani, C.3
Falkowski, P.G.4
-
40
-
-
0242584809
-
Phylogenetic evidence for the cryptophyte origin of the plastid of Dinophysis (Dinophysiales, Dinophyceae)
-
Hackett JD, Maranda L, Yoon HS, Bhattacharya D. 2003. Phylogenetic evidence for the cryptophyte origin of the plastid of Dinophysis (Dinophysiales, Dinophyceae). J Phycol. 39: 440-448.
-
(2003)
J Phycol
, vol.39
, pp. 440-448
-
-
Hackett, J.D.1
Maranda, L.2
Yoon, H.S.3
Bhattacharya, D.4
-
41
-
-
0344440735
-
Nucleus-encoded, plastid-targeted glyceraldehyde- 3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids
-
Harper JT, Keeling PJ. 2003. Nucleus-encoded, plastid-targeted glyceraldehyde- 3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. Mol Biol Evol. 20: 1730-1735.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1730-1735
-
-
Harper, J.T.1
Keeling, P.J.2
-
42
-
-
39549122214
-
Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids?
-
Huang J, Gogarten JP. 2007. Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids? Genome Biol. 8:R99.
-
(2007)
Genome Biol
, vol.8
-
-
Huang, J.1
Gogarten, J.P.2
-
43
-
-
21144435581
-
Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum
-
Huang J, et al. 2004. Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum. Genome Biol. 5:R88.
-
(2004)
Genome Biol
, vol.5
-
-
Huang, J.1
-
44
-
-
77954636478
-
A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids
-
Janouskovec J, Horák A, OborníkM, Lukes J, Keeling PJ. 2010. A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc Natl Acad Sci U S A. 107: 10949-10954.
-
(2010)
Proc Natl Acad Sci U S A.
, vol.107
, pp. 10949-10954
-
-
Janouskovec, J.1
Horák, A.2
Oborníkm Lukes, J.3
Keeling, P.J.4
-
45
-
-
0033520336
-
Inhibitors of the non-mevalonate pathway of isoprenoid biosynthesis as antimalarial drugs
-
Jomaa H, et al. 1999. Inhibitors of the non-mevalonate pathway of isoprenoid biosynthesis as antimalarial drugs. Science 285: 1573-1576.
-
(1999)
Science
, vol.285
, pp. 1573-1576
-
-
Jomaa, H.1
-
46
-
-
39749177154
-
Evolutionary biology: Bridge over troublesome plastids
-
Keeling PJ. 2008. Evolutionary biology: bridge over troublesome plastids. Nature 451: 896-897.
-
(2008)
Nature
, vol.451
, pp. 896-897
-
-
Keeling, P.J.1
-
47
-
-
12844260363
-
Identification and characterization of a new conserved motif within the presequence of proteins targeted into complex diatom plastids
-
Kilian O, Kroth PG. 2005. Identification and characterization of a new conserved motif within the presequence of proteins targeted into complex diatom plastids. Plant J. 41: 175-183.
-
(2005)
Plant J.
, vol.41
, pp. 175-183
-
-
Kilian, O.1
Kroth, P.G.2
-
48
-
-
23944440377
-
Symbiodinium (Pyrrhophyta) genome sizes (DNA content) are smallest among dinoflagellates
-
LaJeunesse TC, Lambert G, Andersen RA, Coffroth MA, Galbraith DW. 2005. Symbiodinium (Pyrrhophyta) genome sizes (DNA content) are smallest among dinoflagellates. J Phycol. 41: 880-886.
-
(2005)
J Phycol
, vol.41
, pp. 880-886
-
-
Lajeunesse, T.C.1
Lambert, G.2
Andersen, R.A.3
Coffroth, M.A.4
Galbraith, D.W.5
-
49
-
-
43049085945
-
The eukaryotic tree of life: Endosymbiosis takes its TOL
-
Lane CE, Archibald JM. 2008. The eukaryotic tree of life: endosymbiosis takes its TOL. Trends Ecol Evol. 23: 268-275.
-
(2008)
Trends Ecol Evol
, vol.23
, pp. 268-275
-
-
Lane, C.E.1
Archibald, J.M.2
-
50
-
-
60949096474
-
Reply to bodył, stiller and mackiewicz: "chromalveolate plastids: Direct descent or multiple endosymbioses?"
-
Lane CE, Archibald JM. 2009. Reply to Bodył, Stiller and Mackiewicz: "Chromalveolate plastids: direct descent or multiple endosymbioses?". Trends Ecol Evol. 24: 121-122.
-
(2009)
Trends Ecol Evol
, vol.24
, pp. 121-122
-
-
Lane, C.E.1
Archibald, J.M.2
-
51
-
-
38049150492
-
Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function
-
Lane CE, et al. 2007. Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function. Proc Natl Acad Sci U S A. 104: 19908-19913.
-
(2007)
Proc Natl Acad Sci U S A.
, vol.104
, pp. 19908-19913
-
-
Lane, C.E.1
-
52
-
-
45849154166
-
An improved general amino acid replacement matrix
-
Le SQ, Gascuel O. 2008. An improved general amino acid replacement matrix. Mol Biol Evol. 25: 1307-1320.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
-
53
-
-
0031018799
-
Evolutionary origin of cryptomonad microalgae: Two novel chloroplast/cytosol-specific GAPDH genes as potential markers of ancestral endosymbiont and host cell components
-
Liaud MF, Brandt U, Scherzinger M, Cerff R. 1997. Evolutionary origin of cryptomonad microalgae: two novel chloroplast/cytosol-specific GAPDH genes as potential markers of ancestral endosymbiont and host cell components. J Mol Evol. 44(Suppl 1):S28-S37. (Pubitemid 27098525)
-
(1997)
Journal of Molecular Evolution
, vol.44
, Issue.SUPPL. 1
-
-
Liaud, M.-F.1
Brandt, U.2
Scherzinger, M.3
Cerff, R.4
-
54
-
-
79959953825
-
Genomic understanding of dinoflagellates
-
Lin S. 2011. Genomic understanding of dinoflagellates. Res Microbiol. 162: 551-569.
-
(2011)
Res Microbiol
, vol.162
, pp. 551-569
-
-
Lin, S.1
-
56
-
-
0030293672
-
Higher-plant chloroplast and cytosolic fructose-1,6-bisphosphatase isoenzymes: Origins via duplication rather than prokaryote-eukaryote divergence
-
Martin W, Mustafa AZ, Henze K, Schnarrenberger C. 1996. Higher-plant chloroplast and cytosolic fructose-1,6-bisphosphatase isoenzymes: origins via duplication rather than prokaryote-eukaryote divergence. Plant Mol Biol. 32: 485-491.
-
(1996)
Plant Mol Biol
, vol.32
, pp. 485-491
-
-
Martin, W.1
Mustafa, A.Z.2
Henze, K.3
Schnarrenberger, C.4
-
57
-
-
0030850422
-
The evolution of the Calvin cycle from prokaryotic to eukaryotic chromosomes: A case study of functional redundancy in ancient pathways through endosymbiosis
-
Martin W, Schnarrenberger C. 1997. The evolution of the Calvin cycle from prokaryotic to eukaryotic chromosomes: a case study of functional redundancy in ancient pathways through endosymbiosis. Curr Genet. 32: 1-18.
-
(1997)
Curr Genet
, vol.32
, pp. 1-18
-
-
Martin, W.1
Schnarrenberger, C.2
-
58
-
-
79952453090
-
Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin
-
Matsumoto T, et al. 2011. Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin. Protist 162: 268-276.
-
(2011)
Protist
, vol.162
, pp. 268-276
-
-
Matsumoto, T.1
-
59
-
-
44649178727
-
A cryptic algal group unveiled: A plastid biosynthesis pathway in the oyster parasite Perkinsus marinus
-
Matsuzaki M, Kuroiwa H, Kuroiwa T, Kita K, Nozaki H. 2008. A cryptic algal group unveiled: a plastid biosynthesis pathway in the oyster parasite Perkinsus marinus. Mol Biol Evol. 25: 1167-1179.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1167-1179
-
-
Matsuzaki, M.1
Kuroiwa, H.2
Kuroiwa, T.3
Kita, K.4
Nozaki, H.5
-
60
-
-
77953676978
-
A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum
-
Minge MA, et al. 2010. A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum. BMC Evol Biol. 10: 191.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 191
-
-
Minge, M.A.1
-
61
-
-
39749142234
-
A photosynthetic alveolate closely related to apicomplexan parasites
-
Moore RB, et al. 2008. A photosynthetic alveolate closely related to apicomplexan parasites. Nature 451: 959-963.
-
(2008)
Nature
, vol.451
, pp. 959-963
-
-
Moore, R.B.1
-
62
-
-
0028977898
-
A nuclear-encoded form II RuBisCO in dinoflagellates
-
Morse D, Salois P, Markovic P, Hastings JW. 1995. A nuclear-encoded form II RuBisCO in dinoflagellates. Science 268: 1622-1624.
-
(1995)
Science
, vol.268
, pp. 1622-1624
-
-
Morse, D.1
Salois, P.2
Markovic, P.3
Hastings, J.W.4
-
63
-
-
67649998350
-
Genomic footprints of a cryptic plastid endosymbiosis in diatoms
-
Moustafa A, et al. 2009. Genomic footprints of a cryptic plastid endosymbiosis in diatoms. Science 324: 1724-1726.
-
(2009)
Science
, vol.324
, pp. 1724-1726
-
-
Moustafa, A.1
-
64
-
-
0041669431
-
Plastid ultrastructure defines the protein import pathway in dinoflagellates
-
Nassoury N, Cappadocia M, Morse D. 2003. Plastid ultrastructure defines the protein import pathway in dinoflagellates. J Cell Sci. 116: 2867-2874.
-
(2003)
J Cell Sci
, vol.116
, pp. 2867-2874
-
-
Nassoury, N.1
Cappadocia, M.2
Morse, D.3
-
65
-
-
84856173096
-
Multiple plastids collected by the dinoflagellate Dinophysis mitra through kleptoplastidy
-
Nishitani G, et al. 2011. Multiple plastids collected by the dinoflagellate Dinophysis mitra through kleptoplastidy. Appl Environ Microbiol. 78: 813-821.
-
(2011)
Appl Environ Microbiol
, vol.78
, pp. 813-821
-
-
Nishitani, G.1
-
66
-
-
84856233652
-
Morphology, ultrastructure and life cycle of Vitrella brassicaformis n sp, n gen, a novel chromerid from the Great Barrier Reef
-
Oborník M, et al. 2012. Morphology, ultrastructure and life cycle of Vitrella brassicaformis n. sp., n. gen., a novel chromerid from the Great Barrier Reef. Protist 163: 306-323.
-
(2012)
Protist
, vol.163
, pp. 306-323
-
-
Oborník, M.1
-
67
-
-
57649129659
-
Evolution of the apicoplast and its hosts: From heterotrophy to autotrophy and back again
-
Oborník M, Janouskovec J, Chrudimský T, Lukeš J. 2009. Evolution of the apicoplast and its hosts: from heterotrophy to autotrophy and back again. Int J Parasitol. 39: 1-12.
-
(2009)
Int J Parasitol
, vol.39
, pp. 1-12
-
-
Oborník, M.1
Janouskovec, J.2
Chrudimský, T.3
Lukeš, J.4
-
68
-
-
22744459793
-
The katablepharids are a distant sister group of the Cryptophyta: A proposal for Katablepharidophyta divisio nova/Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny
-
Okamoto N, Inouye I. 2005. The katablepharids are a distant sister group of the Cryptophyta: a proposal for Katablepharidophyta divisio nova/Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny. Protist 156: 163-179.
-
(2005)
Protist
, vol.156
, pp. 163-179
-
-
Okamoto, N.1
Inouye, I.2
-
69
-
-
0031016902
-
Organelle genomes: Going, going, gone!
-
Palmer JD. 1997. Organelle genomes: going, going, gone! Science 275: 790-791.
-
(1997)
Science
, vol.275
, pp. 790-791
-
-
Palmer, J.D.1
-
70
-
-
6344265521
-
Gene replacement of fructose- 1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates
-
Patron NJ, Rogers MB, Keeling PJ. 2004. Gene replacement of fructose- 1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates. Eukaryot Cell. 3: 1169-1175.
-
(2004)
Eukaryot Cell
, vol.3
, pp. 1169-1175
-
-
Patron, N.J.1
Rogers, M.B.2
Keeling, P.J.3
-
71
-
-
33646881141
-
A "green" phosphoribulokinase in complex algae with red plastids: Evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates
-
Petersen J, Teich R, Brinkmann H, Cerff R. 2006. A "green" phosphoribulokinase in complex algae with red plastids: evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates. J Mol Evol. 62: 143-157.
-
(2006)
J Mol Evol
, vol.62
, pp. 143-157
-
-
Petersen, J.1
Teich, R.2
Brinkmann, H.3
Cerff, R.4
-
72
-
-
0027494836
-
MUST, a computer package of management utilities for sequences and trees
-
Philippe H. 1993. MUST, a computer package of management utilities for sequences and trees. Nucleic Acids Res. 21: 5264-5272.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 5264-5272
-
-
Philippe, H.1
-
73
-
-
2342520626
-
Tropical infectious diseases: Metabolic maps and functions of the Plasmodium falciparum apicoplast
-
Ralph SA, et al. 2004. Tropical infectious diseases: metabolic maps and functions of the Plasmodium falciparum apicoplast. Nat RevMicrobiol. 2: 203-216.
-
(2004)
Nat RevMicrobiol
, vol.2
, pp. 203-216
-
-
Ralph, S.A.1
-
74
-
-
22744445156
-
Monophyly of primary photosynthetic eukaryotes: Green plants, red algae, and glaucophytes
-
Rodríguez-Ezpeleta N, et al. 2005. Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes. Curr Biol. 15: 1325-1330.
-
(2005)
Curr Biol
, vol.15
, pp. 1325-1330
-
-
Rodríguez-Ezpeleta, N.1
-
75
-
-
33847656285
-
Detecting and overcoming systematic errors in genome-scale phylogenies
-
Rodríguez-Ezpeleta N, et al. 2007. Detecting and overcoming systematic errors in genome-scale phylogenies. Syst Biol. 56: 389-399.
-
(2007)
Syst Biol
, vol.56
, pp. 389-399
-
-
Rodríguez-Ezpeleta, N.1
-
76
-
-
48049100248
-
A hypothesis for plastid evolution in chromalveolates
-
Sanchez-Puerta MV, Delwiche CF. 2008. A hypothesis for plastid evolution in chromalveolates. J Phycol. 44: 1097-1107.
-
(2008)
J Phycol
, vol.44
, pp. 1097-1107
-
-
Sanchez-Puerta, M.V.1
Delwiche, C.F.2
-
77
-
-
33748041084
-
Heterotachy processes in rhodophyte-derived secondhand plastid genes: Implications for addressing the origin and evolution of dinoflagellate plastids
-
Shalchian-Tabrizi K, et al. 2006. Heterotachy processes in rhodophyte-derived secondhand plastid genes: implications for addressing the origin and evolution of dinoflagellate plastids. Mol Biol Evol. 23: 1504-1515.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1504-1515
-
-
Shalchian-Tabrizi, K.1
-
78
-
-
34047211982
-
Der1-mediated preprotein import into the periplastid compartment of chromalveolates?
-
Sommer MS, et al. 2007. Der1-mediated preprotein import into the periplastid compartment of chromalveolates? Mol Biol Evol. 24: 918-928.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 918-928
-
-
Sommer, M.S.1
-
79
-
-
77954199422
-
Time and memory efficient likelihoodbased tree searches on phylogenomic alignments with missing data
-
Stamatakis A, Alachiotis N. 2010. Time and memory efficient likelihoodbased tree searches on phylogenomic alignments with missing data. Bioinformatics 26:i132-i139.
-
(2010)
Bioinformatics
, vol.26
-
-
Stamatakis, A.1
Alachiotis, N.2
-
80
-
-
0035990251
-
One, two, three: Nature's tool box for building plastids
-
Stoebe B, Maier UG. 2002. One, two, three: nature's tool box for building plastids. Protoplasma 219: 123-130.
-
(2002)
Protoplasma
, vol.219
, pp. 123-130
-
-
Stoebe, B.1
Maier, U.G.2
-
82
-
-
84884909507
-
Three old and one new: Protein import into red algal-derived plastids surrounded by four membranes
-
Stork S, Lau J, Moog D, Maier UG. 2013. Three old and one new: protein import into red algal-derived plastids surrounded by four membranes. Protoplasma 250: 1013-1023.
-
(2013)
Protoplasma
, vol.250
, pp. 1013-1023
-
-
Stork, S.1
Lau, J.2
Moog, D.3
Maier, U.G.4
-
83
-
-
62749167907
-
A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3- phosphate dehydrogenase genes in "chromalveolate" members
-
Takishita K, Yamaguchi H, Maruyama T, Inagaki Y. 2009. A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3- phosphate dehydrogenase genes in "chromalveolate" members. PLoS One 4:e4737.
-
(2009)
PLoS One
, vol.4
-
-
Takishita, K.1
Yamaguchi, H.2
Maruyama, T.3
Inagaki, Y.4
-
84
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
Talavera G, Castresana J. 2007. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol. 56: 564-577.
-
(2007)
Syst Biol
, vol.56
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
85
-
-
34249281858
-
Origin and distribution of Calvin cycle fructose and sedoheptulose bisphosphatases in plantae and complex algae: A single secondary origin of complex red plastids and subsequent propagation via tertiary endosymbioses
-
Teich R, Zauner S, Baurain D, Brinkmann H, Petersen J. 2007. Origin and distribution of Calvin cycle fructose and sedoheptulose bisphosphatases in plantae and complex algae: a single secondary origin of complex red plastids and subsequent propagation via tertiary endosymbioses. Protist 158: 263-276.
-
(2007)
Protist
, vol.158
, pp. 263-276
-
-
Teich, R.1
Zauner, S.2
Baurain, D.3
Brinkmann, H.4
Petersen, J.5
-
86
-
-
34249707387
-
Is there a plastid in Perkinsus atlanticus (Phylum Perkinsozoa)?
-
Teles-Grilo ML, et al. 2007. Is there a plastid in Perkinsus atlanticus (Phylum Perkinsozoa)? Eur J Protistol. 43: 163-167.
-
(2007)
Eur J Protistol
, vol.43
, pp. 163-167
-
-
Teles-Grilo, M.L.1
-
87
-
-
0033624957
-
Phylogenetic analyses indicate that the 19'Hexanoyloxy-fucoxanthin- containing dinoflagellates have tertiary plastids of haptophyte origin
-
Tengs T, et al. 2000. Phylogenetic analyses indicate that the 19'Hexanoyloxy-fucoxanthin-containing dinoflagellates have tertiary plastids of haptophyte origin. Mol Biol Evol. 17: 718-729.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 718-729
-
-
Tengs, T.1
-
88
-
-
0031574072
-
The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
89
-
-
51649091659
-
Toxoplasma gondii Tic20 is essential for apicoplast protein import
-
van Dooren GG, Tomova C, Agrawal S, Humbel BM, Striepen B. 2008. Toxoplasma gondii Tic20 is essential for apicoplast protein import. Proc Natl Acad Sci U S A. 105: 13574-13579.
-
(2008)
Proc Natl Acad Sci U S A.
, vol.105
, pp. 13574-13579
-
-
Van Dooren, G.G.1
Tomova, C.2
Agrawal, S.3
Humbel, B.M.4
Striepen, B.5
-
90
-
-
32644474412
-
Rampant polyuridylylation of plastid gene transcripts in the dinoflagellate Lingulodinium
-
Wang Y, Morse D. 2006. Rampant polyuridylylation of plastid gene transcripts in the dinoflagellate Lingulodinium. Nucleic Acids Res. 34: 613-619.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 613-619
-
-
Wang, Y.1
Morse, D.2
-
91
-
-
0030590259
-
Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum
-
Wilson RJ, et al. 1996. Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum. J Mol Biol. 261: 155-172.
-
(1996)
J Mol Biol
, vol.261
, pp. 155-172
-
-
Wilson, R.J.1
-
92
-
-
84857232993
-
Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia
-
Woehle C, Dagan T, Martin WF, Gould SB. 2011. Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia. Genome Biol Evol. 3: 1220-1230.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 1220-1230
-
-
Woehle, C.1
Dagan, T.2
Martin, W.F.3
Gould, S.B.4
-
93
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18: 821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
94
-
-
0033536215
-
Single gene circles in dinoflagellate chloroplast genomes
-
Zhang Z, Green BR, Cavalier-Smith T. 1999. Single gene circles in dinoflagellate chloroplast genomes. Nature 400: 155-159.
-
(1999)
Nature
, vol.400
, pp. 155-159
-
-
Zhang, Z.1
Green, B.R.2
Cavalier-Smith, T.3
-
95
-
-
0033929166
-
Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: A possible common origin for sporozoan and dinoflagellate plastids
-
Zhang Z, Green BR, Cavalier-Smith T. 2000. Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: a possible common origin for sporozoan and dinoflagellate plastids. J Mol Evol. 51: 26-40.
-
(2000)
J Mol Evol
, vol.51
, pp. 26-40
-
-
Zhang, Z.1
Green, B.R.2
Cavalier-Smith, T.3
|