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Volumn 6, Issue 3, 2014, Pages 666-684

Chromera velia, endosymbioses and the rhodoplex hypothesis - Plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages)

Author keywords

Chromalveolate hypothesis; Eukaryote to eukaryote endosymbioses; Horizontal and endosymbiotic gene transfer; Long branch attraction artifacts; Next generation sequencing

Indexed keywords

CAROTENOID; PERIDININ;

EID: 84902970129     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evu043     Document Type: Article
Times cited : (88)

References (95)
  • 1
    • 33644782643 scopus 로고    scopus 로고
    • The new higher level classification of eukaryotes with emphasis on the taxonomy of protists
    • Adl SM, et al. 2005. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J Eukaryot Microbiol. 52: 399-451.
    • (2005) J Eukaryot Microbiol , vol.52 , pp. 399-451
    • Adl, S.M.1
  • 2
    • 84867310470 scopus 로고    scopus 로고
    • The revised classification of eukaryotes
    • Adl SM, et al. 2012. The revised classification of eukaryotes. J Eukaryot Microbiol. 59: 429-493.
    • (2012) J Eukaryot Microbiol , vol.59 , pp. 429-493
    • Adl, S.M.1
  • 3
    • 70450251981 scopus 로고    scopus 로고
    • Genetic evidence that an endosymbiont-derived endoplasmic reticulum-associated protein degradation (ERAD) system functions in import of apicoplast proteins
    • Agrawal S, van Dooren GG, Beatty WL, Striepen B. 2009. Genetic evidence that an endosymbiont-derived endoplasmic reticulum-associated protein degradation (ERAD) system functions in import of apicoplast proteins. J Biol Chem. 284: 33683-33691.
    • (2009) J Biol Chem , vol.284 , pp. 33683-33691
    • Agrawal, S.1    Van Dooren, G.G.2    Beatty, W.L.3    Striepen, B.4
  • 4
    • 84862894116 scopus 로고    scopus 로고
    • Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms
    • Allen AE, et al. 2012. Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms. Mol Biol Evol. 29: 367-379.
    • (2012) Mol Biol Evol , vol.29 , pp. 367-379
    • Allen, A.E.1
  • 5
    • 58349101981 scopus 로고    scopus 로고
    • The puzzle of plastid evolution
    • Archibald JM. 2009. The puzzle of plastid evolution. Curr Biol. 19: R81-R88.
    • (2009) Curr Biol , vol.19
    • Archibald, J.M.1
  • 7
    • 23944527127 scopus 로고    scopus 로고
    • Chlorophyll ccontaining plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages
    • Bachvaroff TR, Sanchez Puerta MV, Delwiche CF. 2005. Chlorophyll ccontaining plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages. Mol Biol Evol. 22: 1772-1782.
    • (2005) Mol Biol Evol , vol.22 , pp. 1772-1782
    • Bachvaroff, T.R.1    Sanchez Puerta, M.V.2    Delwiche, C.F.3
  • 8
    • 0037022379 scopus 로고    scopus 로고
    • The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba
    • Bapteste E, et al. 2002. The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba. Proc Natl Acad Sci U S A. 99: 1414-1419.
    • (2002) Proc Natl Acad Sci U S A. , vol.99 , pp. 1414-1419
    • Bapteste, E.1
  • 9
    • 77953749915 scopus 로고    scopus 로고
    • Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles
    • Baurain D, et al. 2010. Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes, and stramenopiles. Mol Biol Evol. 27: 1698-1709.
    • (2010) Mol Biol Evol , vol.27 , pp. 1698-1709
    • Baurain, D.1
  • 10
    • 20644433743 scopus 로고    scopus 로고
    • Do plastid-related characters support the chromalveolate hypothesis?
    • Bodył A. 2005. Do plastid-related characters support the chromalveolate hypothesis? J Phycol 41: 712-719.
    • (2005) J Phycol , vol.41 , pp. 712-719
    • Bodył, A.1
  • 11
    • 33845510737 scopus 로고    scopus 로고
    • Did the peridinin plastid evolve through tertiary endosymbioses? A hypothesis
    • Bodył A, Moszczyński K. 2006. Did the peridinin plastid evolve through tertiary endosymbioses? A hypothesis. Eur J Phycol. 41: 435-448.
    • (2006) Eur J Phycol , vol.41 , pp. 435-448
    • Bodył, A.1    Moszczyński, K.2
  • 12
    • 60949088852 scopus 로고    scopus 로고
    • Chromalveolate plastids: Direct descent or multiple endosymbioses?
    • Bodył A, Stiller JW, Mackiewicz P. 2009. Chromalveolate plastids: direct descent or multiple endosymbioses? Trends Ecol Evol. 24: 119-121.
    • (2009) Trends Ecol Evol , vol.24 , pp. 119-121
    • Bodył, A.1    Stiller, J.W.2    MacKiewicz, P.3
  • 14
    • 79954779971 scopus 로고    scopus 로고
    • Making new out of old: Recycling and modification of an ancient protein translocation system during eukaryotic evolution. Mechanistic comparison and phylogenetic analysis of ERAD, SELMA and the peroxisomal importomer
    • Bolte K, et al. 2011. Making new out of old: recycling and modification of an ancient protein translocation system during eukaryotic evolution. Mechanistic comparison and phylogenetic analysis of ERAD, SELMA and the peroxisomal importomer. Bioessays 33: 368-376.
    • (2011) Bioessays , vol.33 , pp. 368-376
    • Bolte, K.1
  • 15
    • 27744524191 scopus 로고    scopus 로고
    • An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics
    • Brinkmann H, et al. 2005. An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. Syst Biol. 54: 743-757.
    • (2005) Syst Biol , vol.54 , pp. 743-757
    • Brinkmann, H.1
  • 16
    • 84859945474 scopus 로고    scopus 로고
    • The evolutionary history of haptophytes and cryptophytes: Phylogenomic evidence for separate origins
    • Burki F, Okamoto N, Pombert JF, Keeling PJ. 2012. The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins. Proc Biol Sci. 279: 2246-2254.
    • (2012) Proc Biol Sci , vol.279 , pp. 2246-2254
    • Burki, F.1    Okamoto, N.2    Pombert, J.F.3    Keeling, P.J.4
  • 17
    • 46949092431 scopus 로고    scopus 로고
    • Phylogenomics reveals a new 'megagroup' includingmost photosynthetic eukaryotes
    • Burki F, Shalchian-Tabrizi K, Pawlowski J. 2008. Phylogenomics reveals a new 'megagroup' includingmost photosynthetic eukaryotes. Biol Lett. 4: 366-369.
    • (2008) Biol Lett , vol.4 , pp. 366-369
    • Burki, F.1    Shalchian-Tabrizi, K.2    Pawlowski, J.3
  • 18
    • 0032838597 scopus 로고    scopus 로고
    • Principles of protein and lipid targeting in secondary symbiogenesis: Euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree
    • Cavalier-Smith T. 1999. Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J Eukaryot Microbiol. 46: 347-366.
    • (1999) J Eukaryot Microbiol , vol.46 , pp. 347-366
    • Cavalier-Smith, T.1
  • 19
    • 0031193622 scopus 로고    scopus 로고
    • Ribosomal RNA analysis indicates a benthic pennate diatom ancestry for the endosymbionts of the dinoflagellates Peridinium foliaceum and Peridinium balticum (Pyrrhophyta)
    • Chesnick JM, Kooistra WH, Wellbrock U, Medlin LK. 1997. Ribosomal RNA analysis indicates a benthic pennate diatom ancestry for the endosymbionts of the dinoflagellates Peridinium foliaceum and Peridinium balticum (Pyrrhophyta). J Eukaryot Microbiol. 44: 314-320.
    • (1997) J Eukaryot Microbiol , vol.44 , pp. 314-320
    • Chesnick, J.M.1    Kooistra, W.H.2    Wellbrock, U.3    Medlin, L.K.4
  • 20
    • 79958281553 scopus 로고    scopus 로고
    • Riboneogenesis in yeast
    • Clasquin MF, et al. 2011. Riboneogenesis in yeast. Cell 145: 969-980.
    • (2011) Cell , vol.145 , pp. 969-980
    • Clasquin, M.F.1
  • 21
    • 0027383390 scopus 로고
    • Determinants of coenzyme specificity in glyceraldehyde- 3-phosphate dehydrogenase: Role of the acidic residue in the fingerprint region of the nucleotide binding fold
    • Clermont S, et al. 1993. Determinants of coenzyme specificity in glyceraldehyde- 3-phosphate dehydrogenase: role of the acidic residue in the fingerprint region of the nucleotide binding fold. Biochemistry 32: 10178-10184.
    • (1993) Biochemistry , vol.32 , pp. 10178-10184
    • Clermont, S.1
  • 22
    • 0032727696 scopus 로고    scopus 로고
    • Tracing the thread of plastid diversity through the tapestry of life
    • Delwiche CF. 1999. Tracing the thread of plastid diversity through the tapestry of life. Am Nat. 154:S164-S177.
    • (1999) Am Nat , vol.154
    • Delwiche, C.F.1
  • 23
    • 0029897169 scopus 로고    scopus 로고
    • Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids
    • Delwiche CF, Palmer JD. 1996. Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids. Mol Biol Evol. 13: 873-882.
    • (1996) Mol Biol Evol , vol.13 , pp. 873-882
    • Delwiche, C.F.1    Palmer, J.D.2
  • 24
    • 84866394866 scopus 로고    scopus 로고
    • Reevaluating the green contribution to diatom genomes
    • Deschamps P, Moreira D. 2012. Reevaluating the green contribution to diatom genomes. Genome Biol Evol. 4: 683-688.
    • (2012) Genome Biol Evol , vol.4 , pp. 683-688
    • Deschamps, P.1    Moreira, D.2
  • 25
    • 84893753562 scopus 로고    scopus 로고
    • Evolution of chloroplast transcript processing in Plasmodium and its chromerid algal relatives
    • Dorrell RG, Drew J, Nisbet RE, Howe CJ. 2014. Evolution of chloroplast transcript processing in Plasmodium and its chromerid algal relatives. PLoS Genet. 10:e1004008.
    • (2014) PLoS Genet , vol.10
    • Dorrell, R.G.1    Drew, J.2    Nisbet, R.E.3    Howe, C.J.4
  • 26
    • 79960111189 scopus 로고    scopus 로고
    • Do red and green make brown?: Perspectives on plastid acquisitions within chromalveolates
    • Dorrell RG, Smith AG. 2011. Do red and green make brown?: perspectives on plastid acquisitions within chromalveolates. Eukaryot Cell. 10: 856-868.
    • (2011) Eukaryot Cell , vol.10 , pp. 856-868
    • Dorrell, R.G.1    Smith, A.G.2
  • 27
    • 0035953753 scopus 로고    scopus 로고
    • The highly reduced genome of an enslaved algal nucleus
    • Douglas S, et al. 2001. The highly reduced genome of an enslaved algal nucleus. Nature 410: 1091-1096.
    • (2001) Nature , vol.410 , pp. 1091-1096
    • Douglas, S.1
  • 28
    • 79954771065 scopus 로고    scopus 로고
    • ERAD components in organisms with complex red plastids suggest recruitment of a preexisting protein transport pathway for the periplastid membrane
    • Felsner G, et al. 2011. ERAD components in organisms with complex red plastids suggest recruitment of a preexisting protein transport pathway for the periplastid membrane. Genome Biol Evol. 3: 140-150.
    • (2011) Genome Biol Evol , vol.3 , pp. 140-150
    • Felsner, G.1
  • 29
    • 80053385788 scopus 로고    scopus 로고
    • The search for the missing link: A relic plastid in Perkinsus?
    • Fernández Robledo JA, et al. 2011. The search for the missing link: a relic plastid in Perkinsus? Int J Parasitol. 41: 1217-1229.
    • (2011) Int J Parasitol , vol.41 , pp. 1217-1229
    • Fernández Robledo, J.A.1
  • 30
    • 56449118832 scopus 로고    scopus 로고
    • Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis
    • Frommolt R, et al. 2008. Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis. Mol Biol Evol. 25: 2653-2667.
    • (2008) Mol Biol Evol , vol.25 , pp. 2653-2667
    • Frommolt, R.1
  • 31
    • 79955604863 scopus 로고    scopus 로고
    • Genome evolution of a tertiary dinoflagellate plastid
    • Gabrielsen TM, et al. 2011. Genome evolution of a tertiary dinoflagellate plastid. PLoS One 6:e19132.
    • (2011) PLoS One , vol.6
    • Gabrielsen, T.M.1
  • 32
    • 33745476746 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the chlorarachniophyte nucleomorph: Nature's smallest nucleus
    • Gilson PR, et al. 2006. Complete nucleotide sequence of the chlorarachniophyte nucleomorph: nature's smallest nucleus. Proc Natl Acad Sci U S A. 103: 9566-9571.
    • (2006) Proc Natl Acad Sci U S A. , vol.103 , pp. 9566-9571
    • Gilson, P.R.1
  • 34
    • 33645874636 scopus 로고    scopus 로고
    • Dinoflagellates
    • Graham LE, editor. Upper Saddle River (NJ): Prentice-Hall
    • Graham LE, Wilcox LW. 2000. Dinoflagellates. In: Graham LE, editor. Algae. Upper Saddle River (NJ): Prentice-Hall. p. 198-231.
    • (2000) Algae , pp. 198-231
    • Graham, L.E.1    Wilcox, L.W.2
  • 35
    • 34249304461 scopus 로고    scopus 로고
    • Isoprenoid biosynthesis authenticates the classification of the green alga Mesostigma viride as an ancient streptophyte
    • Grauvogel C, Petersen J. 2007. Isoprenoid biosynthesis authenticates the classification of the green alga Mesostigma viride as an ancient streptophyte. Gene 396: 125-133.
    • (2007) Gene , vol.396 , pp. 125-133
    • Grauvogel, C.1    Petersen, J.2
  • 36
    • 37549066871 scopus 로고    scopus 로고
    • Plastid isoprenoid metabolism in the oyster parasite Perkinsus marinus connects dinoflagellates and malaria pathogens - New impetus for studying alveolates
    • Grauvogel C, Reece KS, Brinkmann H, Petersen J. 2007. Plastid isoprenoid metabolism in the oyster parasite Perkinsus marinus connects dinoflagellates and malaria pathogens - new impetus for studying alveolates. J Mol Evol. 65: 725-729.
    • (2007) J Mol Evol , vol.65 , pp. 725-729
    • Grauvogel, C.1    Reece, K.S.2    Brinkmann, H.3    Petersen, J.4
  • 37
    • 79551514620 scopus 로고    scopus 로고
    • After the primary endosymbiosis: An update on the chromalveolate hypothesis and the origins of algae with Chl c
    • Green BR. 2011. After the primary endosymbiosis: an update on the chromalveolate hypothesis and the origins of algae with Chl c. Photosynth Res. 107: 103-115.
    • (2011) Photosynth Res , vol.107 , pp. 103-115
    • Green, B.R.1
  • 38
    • 34250179494 scopus 로고    scopus 로고
    • Protein targeting into complex diatom plastids: Functional characterisation of a specific targeting motif
    • Gruber A, et al. 2007. Protein targeting into complex diatom plastids: functional characterisation of a specific targeting motif. Plant Mol Biol. 64: 519-530.
    • (2007) Plant Mol Biol , vol.64 , pp. 519-530
    • Gruber, A.1
  • 39
    • 0037388327 scopus 로고    scopus 로고
    • The mesozoic radiation of eukaryotic algae: The portable plastid hypothesis
    • Grzebyk D, Schofield O, Vetriani C, Falkowski PG. 2003. The mesozoic radiation of eukaryotic algae: the portable plastid hypothesis. J Phycol. 39: 259-267.
    • (2003) J Phycol , vol.39 , pp. 259-267
    • Grzebyk, D.1    Schofield, O.2    Vetriani, C.3    Falkowski, P.G.4
  • 40
    • 0242584809 scopus 로고    scopus 로고
    • Phylogenetic evidence for the cryptophyte origin of the plastid of Dinophysis (Dinophysiales, Dinophyceae)
    • Hackett JD, Maranda L, Yoon HS, Bhattacharya D. 2003. Phylogenetic evidence for the cryptophyte origin of the plastid of Dinophysis (Dinophysiales, Dinophyceae). J Phycol. 39: 440-448.
    • (2003) J Phycol , vol.39 , pp. 440-448
    • Hackett, J.D.1    Maranda, L.2    Yoon, H.S.3    Bhattacharya, D.4
  • 41
    • 0344440735 scopus 로고    scopus 로고
    • Nucleus-encoded, plastid-targeted glyceraldehyde- 3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids
    • Harper JT, Keeling PJ. 2003. Nucleus-encoded, plastid-targeted glyceraldehyde- 3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. Mol Biol Evol. 20: 1730-1735.
    • (2003) Mol Biol Evol , vol.20 , pp. 1730-1735
    • Harper, J.T.1    Keeling, P.J.2
  • 42
    • 39549122214 scopus 로고    scopus 로고
    • Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids?
    • Huang J, Gogarten JP. 2007. Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids? Genome Biol. 8:R99.
    • (2007) Genome Biol , vol.8
    • Huang, J.1    Gogarten, J.P.2
  • 43
    • 21144435581 scopus 로고    scopus 로고
    • Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum
    • Huang J, et al. 2004. Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum. Genome Biol. 5:R88.
    • (2004) Genome Biol , vol.5
    • Huang, J.1
  • 44
    • 77954636478 scopus 로고    scopus 로고
    • A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids
    • Janouskovec J, Horák A, OborníkM, Lukes J, Keeling PJ. 2010. A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc Natl Acad Sci U S A. 107: 10949-10954.
    • (2010) Proc Natl Acad Sci U S A. , vol.107 , pp. 10949-10954
    • Janouskovec, J.1    Horák, A.2    Oborníkm Lukes, J.3    Keeling, P.J.4
  • 45
    • 0033520336 scopus 로고    scopus 로고
    • Inhibitors of the non-mevalonate pathway of isoprenoid biosynthesis as antimalarial drugs
    • Jomaa H, et al. 1999. Inhibitors of the non-mevalonate pathway of isoprenoid biosynthesis as antimalarial drugs. Science 285: 1573-1576.
    • (1999) Science , vol.285 , pp. 1573-1576
    • Jomaa, H.1
  • 46
    • 39749177154 scopus 로고    scopus 로고
    • Evolutionary biology: Bridge over troublesome plastids
    • Keeling PJ. 2008. Evolutionary biology: bridge over troublesome plastids. Nature 451: 896-897.
    • (2008) Nature , vol.451 , pp. 896-897
    • Keeling, P.J.1
  • 47
    • 12844260363 scopus 로고    scopus 로고
    • Identification and characterization of a new conserved motif within the presequence of proteins targeted into complex diatom plastids
    • Kilian O, Kroth PG. 2005. Identification and characterization of a new conserved motif within the presequence of proteins targeted into complex diatom plastids. Plant J. 41: 175-183.
    • (2005) Plant J. , vol.41 , pp. 175-183
    • Kilian, O.1    Kroth, P.G.2
  • 48
    • 23944440377 scopus 로고    scopus 로고
    • Symbiodinium (Pyrrhophyta) genome sizes (DNA content) are smallest among dinoflagellates
    • LaJeunesse TC, Lambert G, Andersen RA, Coffroth MA, Galbraith DW. 2005. Symbiodinium (Pyrrhophyta) genome sizes (DNA content) are smallest among dinoflagellates. J Phycol. 41: 880-886.
    • (2005) J Phycol , vol.41 , pp. 880-886
    • Lajeunesse, T.C.1    Lambert, G.2    Andersen, R.A.3    Coffroth, M.A.4    Galbraith, D.W.5
  • 49
    • 43049085945 scopus 로고    scopus 로고
    • The eukaryotic tree of life: Endosymbiosis takes its TOL
    • Lane CE, Archibald JM. 2008. The eukaryotic tree of life: endosymbiosis takes its TOL. Trends Ecol Evol. 23: 268-275.
    • (2008) Trends Ecol Evol , vol.23 , pp. 268-275
    • Lane, C.E.1    Archibald, J.M.2
  • 50
    • 60949096474 scopus 로고    scopus 로고
    • Reply to bodył, stiller and mackiewicz: "chromalveolate plastids: Direct descent or multiple endosymbioses?"
    • Lane CE, Archibald JM. 2009. Reply to Bodył, Stiller and Mackiewicz: "Chromalveolate plastids: direct descent or multiple endosymbioses?". Trends Ecol Evol. 24: 121-122.
    • (2009) Trends Ecol Evol , vol.24 , pp. 121-122
    • Lane, C.E.1    Archibald, J.M.2
  • 51
    • 38049150492 scopus 로고    scopus 로고
    • Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function
    • Lane CE, et al. 2007. Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function. Proc Natl Acad Sci U S A. 104: 19908-19913.
    • (2007) Proc Natl Acad Sci U S A. , vol.104 , pp. 19908-19913
    • Lane, C.E.1
  • 52
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • Le SQ, Gascuel O. 2008. An improved general amino acid replacement matrix. Mol Biol Evol. 25: 1307-1320.
    • (2008) Mol Biol Evol , vol.25 , pp. 1307-1320
    • Le, S.Q.1    Gascuel, O.2
  • 53
    • 0031018799 scopus 로고    scopus 로고
    • Evolutionary origin of cryptomonad microalgae: Two novel chloroplast/cytosol-specific GAPDH genes as potential markers of ancestral endosymbiont and host cell components
    • Liaud MF, Brandt U, Scherzinger M, Cerff R. 1997. Evolutionary origin of cryptomonad microalgae: two novel chloroplast/cytosol-specific GAPDH genes as potential markers of ancestral endosymbiont and host cell components. J Mol Evol. 44(Suppl 1):S28-S37. (Pubitemid 27098525)
    • (1997) Journal of Molecular Evolution , vol.44 , Issue.SUPPL. 1
    • Liaud, M.-F.1    Brandt, U.2    Scherzinger, M.3    Cerff, R.4
  • 54
    • 79959953825 scopus 로고    scopus 로고
    • Genomic understanding of dinoflagellates
    • Lin S. 2011. Genomic understanding of dinoflagellates. Res Microbiol. 162: 551-569.
    • (2011) Res Microbiol , vol.162 , pp. 551-569
    • Lin, S.1
  • 56
    • 0030293672 scopus 로고    scopus 로고
    • Higher-plant chloroplast and cytosolic fructose-1,6-bisphosphatase isoenzymes: Origins via duplication rather than prokaryote-eukaryote divergence
    • Martin W, Mustafa AZ, Henze K, Schnarrenberger C. 1996. Higher-plant chloroplast and cytosolic fructose-1,6-bisphosphatase isoenzymes: origins via duplication rather than prokaryote-eukaryote divergence. Plant Mol Biol. 32: 485-491.
    • (1996) Plant Mol Biol , vol.32 , pp. 485-491
    • Martin, W.1    Mustafa, A.Z.2    Henze, K.3    Schnarrenberger, C.4
  • 57
    • 0030850422 scopus 로고    scopus 로고
    • The evolution of the Calvin cycle from prokaryotic to eukaryotic chromosomes: A case study of functional redundancy in ancient pathways through endosymbiosis
    • Martin W, Schnarrenberger C. 1997. The evolution of the Calvin cycle from prokaryotic to eukaryotic chromosomes: a case study of functional redundancy in ancient pathways through endosymbiosis. Curr Genet. 32: 1-18.
    • (1997) Curr Genet , vol.32 , pp. 1-18
    • Martin, W.1    Schnarrenberger, C.2
  • 58
    • 79952453090 scopus 로고    scopus 로고
    • Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin
    • Matsumoto T, et al. 2011. Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin. Protist 162: 268-276.
    • (2011) Protist , vol.162 , pp. 268-276
    • Matsumoto, T.1
  • 59
    • 44649178727 scopus 로고    scopus 로고
    • A cryptic algal group unveiled: A plastid biosynthesis pathway in the oyster parasite Perkinsus marinus
    • Matsuzaki M, Kuroiwa H, Kuroiwa T, Kita K, Nozaki H. 2008. A cryptic algal group unveiled: a plastid biosynthesis pathway in the oyster parasite Perkinsus marinus. Mol Biol Evol. 25: 1167-1179.
    • (2008) Mol Biol Evol , vol.25 , pp. 1167-1179
    • Matsuzaki, M.1    Kuroiwa, H.2    Kuroiwa, T.3    Kita, K.4    Nozaki, H.5
  • 60
    • 77953676978 scopus 로고    scopus 로고
    • A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum
    • Minge MA, et al. 2010. A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum. BMC Evol Biol. 10: 191.
    • (2010) BMC Evol Biol , vol.10 , pp. 191
    • Minge, M.A.1
  • 61
    • 39749142234 scopus 로고    scopus 로고
    • A photosynthetic alveolate closely related to apicomplexan parasites
    • Moore RB, et al. 2008. A photosynthetic alveolate closely related to apicomplexan parasites. Nature 451: 959-963.
    • (2008) Nature , vol.451 , pp. 959-963
    • Moore, R.B.1
  • 62
    • 0028977898 scopus 로고
    • A nuclear-encoded form II RuBisCO in dinoflagellates
    • Morse D, Salois P, Markovic P, Hastings JW. 1995. A nuclear-encoded form II RuBisCO in dinoflagellates. Science 268: 1622-1624.
    • (1995) Science , vol.268 , pp. 1622-1624
    • Morse, D.1    Salois, P.2    Markovic, P.3    Hastings, J.W.4
  • 63
    • 67649998350 scopus 로고    scopus 로고
    • Genomic footprints of a cryptic plastid endosymbiosis in diatoms
    • Moustafa A, et al. 2009. Genomic footprints of a cryptic plastid endosymbiosis in diatoms. Science 324: 1724-1726.
    • (2009) Science , vol.324 , pp. 1724-1726
    • Moustafa, A.1
  • 64
    • 0041669431 scopus 로고    scopus 로고
    • Plastid ultrastructure defines the protein import pathway in dinoflagellates
    • Nassoury N, Cappadocia M, Morse D. 2003. Plastid ultrastructure defines the protein import pathway in dinoflagellates. J Cell Sci. 116: 2867-2874.
    • (2003) J Cell Sci , vol.116 , pp. 2867-2874
    • Nassoury, N.1    Cappadocia, M.2    Morse, D.3
  • 65
    • 84856173096 scopus 로고    scopus 로고
    • Multiple plastids collected by the dinoflagellate Dinophysis mitra through kleptoplastidy
    • Nishitani G, et al. 2011. Multiple plastids collected by the dinoflagellate Dinophysis mitra through kleptoplastidy. Appl Environ Microbiol. 78: 813-821.
    • (2011) Appl Environ Microbiol , vol.78 , pp. 813-821
    • Nishitani, G.1
  • 66
    • 84856233652 scopus 로고    scopus 로고
    • Morphology, ultrastructure and life cycle of Vitrella brassicaformis n sp, n gen, a novel chromerid from the Great Barrier Reef
    • Oborník M, et al. 2012. Morphology, ultrastructure and life cycle of Vitrella brassicaformis n. sp., n. gen., a novel chromerid from the Great Barrier Reef. Protist 163: 306-323.
    • (2012) Protist , vol.163 , pp. 306-323
    • Oborník, M.1
  • 67
    • 57649129659 scopus 로고    scopus 로고
    • Evolution of the apicoplast and its hosts: From heterotrophy to autotrophy and back again
    • Oborník M, Janouskovec J, Chrudimský T, Lukeš J. 2009. Evolution of the apicoplast and its hosts: from heterotrophy to autotrophy and back again. Int J Parasitol. 39: 1-12.
    • (2009) Int J Parasitol , vol.39 , pp. 1-12
    • Oborník, M.1    Janouskovec, J.2    Chrudimský, T.3    Lukeš, J.4
  • 68
    • 22744459793 scopus 로고    scopus 로고
    • The katablepharids are a distant sister group of the Cryptophyta: A proposal for Katablepharidophyta divisio nova/Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny
    • Okamoto N, Inouye I. 2005. The katablepharids are a distant sister group of the Cryptophyta: a proposal for Katablepharidophyta divisio nova/Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny. Protist 156: 163-179.
    • (2005) Protist , vol.156 , pp. 163-179
    • Okamoto, N.1    Inouye, I.2
  • 69
    • 0031016902 scopus 로고    scopus 로고
    • Organelle genomes: Going, going, gone!
    • Palmer JD. 1997. Organelle genomes: going, going, gone! Science 275: 790-791.
    • (1997) Science , vol.275 , pp. 790-791
    • Palmer, J.D.1
  • 70
    • 6344265521 scopus 로고    scopus 로고
    • Gene replacement of fructose- 1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates
    • Patron NJ, Rogers MB, Keeling PJ. 2004. Gene replacement of fructose- 1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates. Eukaryot Cell. 3: 1169-1175.
    • (2004) Eukaryot Cell , vol.3 , pp. 1169-1175
    • Patron, N.J.1    Rogers, M.B.2    Keeling, P.J.3
  • 71
    • 33646881141 scopus 로고    scopus 로고
    • A "green" phosphoribulokinase in complex algae with red plastids: Evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates
    • Petersen J, Teich R, Brinkmann H, Cerff R. 2006. A "green" phosphoribulokinase in complex algae with red plastids: evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates. J Mol Evol. 62: 143-157.
    • (2006) J Mol Evol , vol.62 , pp. 143-157
    • Petersen, J.1    Teich, R.2    Brinkmann, H.3    Cerff, R.4
  • 72
    • 0027494836 scopus 로고
    • MUST, a computer package of management utilities for sequences and trees
    • Philippe H. 1993. MUST, a computer package of management utilities for sequences and trees. Nucleic Acids Res. 21: 5264-5272.
    • (1993) Nucleic Acids Res , vol.21 , pp. 5264-5272
    • Philippe, H.1
  • 73
    • 2342520626 scopus 로고    scopus 로고
    • Tropical infectious diseases: Metabolic maps and functions of the Plasmodium falciparum apicoplast
    • Ralph SA, et al. 2004. Tropical infectious diseases: metabolic maps and functions of the Plasmodium falciparum apicoplast. Nat RevMicrobiol. 2: 203-216.
    • (2004) Nat RevMicrobiol , vol.2 , pp. 203-216
    • Ralph, S.A.1
  • 74
    • 22744445156 scopus 로고    scopus 로고
    • Monophyly of primary photosynthetic eukaryotes: Green plants, red algae, and glaucophytes
    • Rodríguez-Ezpeleta N, et al. 2005. Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes. Curr Biol. 15: 1325-1330.
    • (2005) Curr Biol , vol.15 , pp. 1325-1330
    • Rodríguez-Ezpeleta, N.1
  • 75
    • 33847656285 scopus 로고    scopus 로고
    • Detecting and overcoming systematic errors in genome-scale phylogenies
    • Rodríguez-Ezpeleta N, et al. 2007. Detecting and overcoming systematic errors in genome-scale phylogenies. Syst Biol. 56: 389-399.
    • (2007) Syst Biol , vol.56 , pp. 389-399
    • Rodríguez-Ezpeleta, N.1
  • 76
    • 48049100248 scopus 로고    scopus 로고
    • A hypothesis for plastid evolution in chromalveolates
    • Sanchez-Puerta MV, Delwiche CF. 2008. A hypothesis for plastid evolution in chromalveolates. J Phycol. 44: 1097-1107.
    • (2008) J Phycol , vol.44 , pp. 1097-1107
    • Sanchez-Puerta, M.V.1    Delwiche, C.F.2
  • 77
    • 33748041084 scopus 로고    scopus 로고
    • Heterotachy processes in rhodophyte-derived secondhand plastid genes: Implications for addressing the origin and evolution of dinoflagellate plastids
    • Shalchian-Tabrizi K, et al. 2006. Heterotachy processes in rhodophyte-derived secondhand plastid genes: implications for addressing the origin and evolution of dinoflagellate plastids. Mol Biol Evol. 23: 1504-1515.
    • (2006) Mol Biol Evol , vol.23 , pp. 1504-1515
    • Shalchian-Tabrizi, K.1
  • 78
    • 34047211982 scopus 로고    scopus 로고
    • Der1-mediated preprotein import into the periplastid compartment of chromalveolates?
    • Sommer MS, et al. 2007. Der1-mediated preprotein import into the periplastid compartment of chromalveolates? Mol Biol Evol. 24: 918-928.
    • (2007) Mol Biol Evol , vol.24 , pp. 918-928
    • Sommer, M.S.1
  • 79
    • 77954199422 scopus 로고    scopus 로고
    • Time and memory efficient likelihoodbased tree searches on phylogenomic alignments with missing data
    • Stamatakis A, Alachiotis N. 2010. Time and memory efficient likelihoodbased tree searches on phylogenomic alignments with missing data. Bioinformatics 26:i132-i139.
    • (2010) Bioinformatics , vol.26
    • Stamatakis, A.1    Alachiotis, N.2
  • 80
    • 0035990251 scopus 로고    scopus 로고
    • One, two, three: Nature's tool box for building plastids
    • Stoebe B, Maier UG. 2002. One, two, three: nature's tool box for building plastids. Protoplasma 219: 123-130.
    • (2002) Protoplasma , vol.219 , pp. 123-130
    • Stoebe, B.1    Maier, U.G.2
  • 82
    • 84884909507 scopus 로고    scopus 로고
    • Three old and one new: Protein import into red algal-derived plastids surrounded by four membranes
    • Stork S, Lau J, Moog D, Maier UG. 2013. Three old and one new: protein import into red algal-derived plastids surrounded by four membranes. Protoplasma 250: 1013-1023.
    • (2013) Protoplasma , vol.250 , pp. 1013-1023
    • Stork, S.1    Lau, J.2    Moog, D.3    Maier, U.G.4
  • 83
    • 62749167907 scopus 로고    scopus 로고
    • A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3- phosphate dehydrogenase genes in "chromalveolate" members
    • Takishita K, Yamaguchi H, Maruyama T, Inagaki Y. 2009. A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3- phosphate dehydrogenase genes in "chromalveolate" members. PLoS One 4:e4737.
    • (2009) PLoS One , vol.4
    • Takishita, K.1    Yamaguchi, H.2    Maruyama, T.3    Inagaki, Y.4
  • 84
    • 34547489084 scopus 로고    scopus 로고
    • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    • Talavera G, Castresana J. 2007. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol. 56: 564-577.
    • (2007) Syst Biol , vol.56 , pp. 564-577
    • Talavera, G.1    Castresana, J.2
  • 85
    • 34249281858 scopus 로고    scopus 로고
    • Origin and distribution of Calvin cycle fructose and sedoheptulose bisphosphatases in plantae and complex algae: A single secondary origin of complex red plastids and subsequent propagation via tertiary endosymbioses
    • Teich R, Zauner S, Baurain D, Brinkmann H, Petersen J. 2007. Origin and distribution of Calvin cycle fructose and sedoheptulose bisphosphatases in plantae and complex algae: a single secondary origin of complex red plastids and subsequent propagation via tertiary endosymbioses. Protist 158: 263-276.
    • (2007) Protist , vol.158 , pp. 263-276
    • Teich, R.1    Zauner, S.2    Baurain, D.3    Brinkmann, H.4    Petersen, J.5
  • 86
    • 34249707387 scopus 로고    scopus 로고
    • Is there a plastid in Perkinsus atlanticus (Phylum Perkinsozoa)?
    • Teles-Grilo ML, et al. 2007. Is there a plastid in Perkinsus atlanticus (Phylum Perkinsozoa)? Eur J Protistol. 43: 163-167.
    • (2007) Eur J Protistol , vol.43 , pp. 163-167
    • Teles-Grilo, M.L.1
  • 87
    • 0033624957 scopus 로고    scopus 로고
    • Phylogenetic analyses indicate that the 19'Hexanoyloxy-fucoxanthin- containing dinoflagellates have tertiary plastids of haptophyte origin
    • Tengs T, et al. 2000. Phylogenetic analyses indicate that the 19'Hexanoyloxy-fucoxanthin-containing dinoflagellates have tertiary plastids of haptophyte origin. Mol Biol Evol. 17: 718-729.
    • (2000) Mol Biol Evol , vol.17 , pp. 718-729
    • Tengs, T.1
  • 88
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 90
    • 32644474412 scopus 로고    scopus 로고
    • Rampant polyuridylylation of plastid gene transcripts in the dinoflagellate Lingulodinium
    • Wang Y, Morse D. 2006. Rampant polyuridylylation of plastid gene transcripts in the dinoflagellate Lingulodinium. Nucleic Acids Res. 34: 613-619.
    • (2006) Nucleic Acids Res , vol.34 , pp. 613-619
    • Wang, Y.1    Morse, D.2
  • 91
    • 0030590259 scopus 로고    scopus 로고
    • Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum
    • Wilson RJ, et al. 1996. Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum. J Mol Biol. 261: 155-172.
    • (1996) J Mol Biol , vol.261 , pp. 155-172
    • Wilson, R.J.1
  • 92
    • 84857232993 scopus 로고    scopus 로고
    • Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia
    • Woehle C, Dagan T, Martin WF, Gould SB. 2011. Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia. Genome Biol Evol. 3: 1220-1230.
    • (2011) Genome Biol Evol , vol.3 , pp. 1220-1230
    • Woehle, C.1    Dagan, T.2    Martin, W.F.3    Gould, S.B.4
  • 93
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18: 821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 94
    • 0033536215 scopus 로고    scopus 로고
    • Single gene circles in dinoflagellate chloroplast genomes
    • Zhang Z, Green BR, Cavalier-Smith T. 1999. Single gene circles in dinoflagellate chloroplast genomes. Nature 400: 155-159.
    • (1999) Nature , vol.400 , pp. 155-159
    • Zhang, Z.1    Green, B.R.2    Cavalier-Smith, T.3
  • 95
    • 0033929166 scopus 로고    scopus 로고
    • Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: A possible common origin for sporozoan and dinoflagellate plastids
    • Zhang Z, Green BR, Cavalier-Smith T. 2000. Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: a possible common origin for sporozoan and dinoflagellate plastids. J Mol Evol. 51: 26-40.
    • (2000) J Mol Evol , vol.51 , pp. 26-40
    • Zhang, Z.1    Green, B.R.2    Cavalier-Smith, T.3


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