-
1
-
-
79960179572
-
The human proteome project: current state and future direction
-
M111 009993
-
Legrain, P., Aebersold, R., Archakov, A., Bairoch, A. et al., The human proteome project: current state and future direction. Mol. Cell. Proteomics 2011, 10, M111 009993.
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Legrain, P.1
Aebersold, R.2
Archakov, A.3
Bairoch, A.4
-
2
-
-
84901280454
-
Mass spectrometry-based membrane proteomics in cancer biomarker discovery
-
Mermelekas, G., Zoidakis, J., Mass spectrometry-based membrane proteomics in cancer biomarker discovery. Expert. Rev. Mol. Diagn. 2014, 14, 549-563.
-
(2014)
Expert. Rev. Mol. Diagn.
, vol.14
, pp. 549-563
-
-
Mermelekas, G.1
Zoidakis, J.2
-
3
-
-
84918582701
-
Mass spectrometry-based proteomics: from cancer biology to protein biomarkers, drug targets, and clinical applications
-
Jimenez, C. R., Verheul, H. M., Mass spectrometry-based proteomics: from cancer biology to protein biomarkers, drug targets, and clinical applications. Am. Soc. Clin. Oncol. Educ. Book 2014, 34, e504-e510.
-
(2014)
Am. Soc. Clin. Oncol. Educ. Book
, vol.34
, pp. e504-e510
-
-
Jimenez, C.R.1
Verheul, H.M.2
-
4
-
-
85005877161
-
Data integration in the era of omics: current and future challenges
-
Gomez-Cabrero, D., Abugessaisa, I., Maier, D., Teschendorff, A. et al., Data integration in the era of omics: current and future challenges. BMC Syst. Biol. 2014, 8 (Suppl 2), I1.
-
(2014)
BMC Syst. Biol.
, vol.8
, pp. I1
-
-
Gomez-Cabrero, D.1
Abugessaisa, I.2
Maier, D.3
Teschendorff, A.4
-
5
-
-
84877254190
-
Integrated genomic characterization of endometrial carcinoma
-
Kandoth, C., Schultz, N., Cherniack, A. D., Akbani, R. et al., Integrated genomic characterization of endometrial carcinoma. Nature 2013, 497, 67-73.
-
(2013)
Nature
, vol.497
, pp. 67-73
-
-
Kandoth, C.1
Schultz, N.2
Cherniack, A.D.3
Akbani, R.4
-
6
-
-
79954617730
-
The cardiokine story unfolds: ischemic stress-induced protein secretion in the heart
-
Doroudgar, S., Glembotski, C. C., The cardiokine story unfolds: ischemic stress-induced protein secretion in the heart. Trends Mol. Med. 2011, 17, 207-214.
-
(2011)
Trends Mol. Med.
, vol.17
, pp. 207-214
-
-
Doroudgar, S.1
Glembotski, C.C.2
-
7
-
-
2542612884
-
Proteomic characterization of the interstitial fluid perfusing the breast tumor microenvironment: a novel resource for biomarker and therapeutic target discovery
-
Celis, J. E., Gromov, P., Cabezon, T., Moreira, J. M. et al., Proteomic characterization of the interstitial fluid perfusing the breast tumor microenvironment: a novel resource for biomarker and therapeutic target discovery. Mol. Cell Proteomics 2004, 3, 327-344.
-
(2004)
Mol. Cell Proteomics
, vol.3
, pp. 327-344
-
-
Celis, J.E.1
Gromov, P.2
Cabezon, T.3
Moreira, J.M.4
-
8
-
-
72549105117
-
Up-regulated proteins in the fluid bathing the tumour cell microenvironment as potential serological markers for early detection of cancer of the breast
-
Gromov, P., Gromova, I., Bunkenborg, J., Cabezon, T. et al., Up-regulated proteins in the fluid bathing the tumour cell microenvironment as potential serological markers for early detection of cancer of the breast. Mol. Oncol. 2010, 4, 65-89.
-
(2010)
Mol. Oncol.
, vol.4
, pp. 65-89
-
-
Gromov, P.1
Gromova, I.2
Bunkenborg, J.3
Cabezon, T.4
-
9
-
-
79551475841
-
Advances in membranous vesicle and exosome proteomics improving biological understanding and biomarker discovery
-
Raimondo, F., Morosi, L., Chinello, C., Magni, F. et al., Advances in membranous vesicle and exosome proteomics improving biological understanding and biomarker discovery. Proteomics 2011, 11, 709-720.
-
(2011)
Proteomics
, vol.11
, pp. 709-720
-
-
Raimondo, F.1
Morosi, L.2
Chinello, C.3
Magni, F.4
-
10
-
-
79551493048
-
Conditioned media from cell lines: a complementary model to clinical specimens for the discovery of disease-specific biomarkers
-
Dowling, P., Clynes, M., Conditioned media from cell lines: a complementary model to clinical specimens for the discovery of disease-specific biomarkers. Proteomics 2011, 11, 794-804.
-
(2011)
Proteomics
, vol.11
, pp. 794-804
-
-
Dowling, P.1
Clynes, M.2
-
11
-
-
84859640829
-
Glycomics, glycoproteomics and the immune system
-
Kolarich, D., Lepenies, B., Seeberger, P. H., Glycomics, glycoproteomics and the immune system. Curr. Opin. Chem. Biol. 2012, 16, 214-220.
-
(2012)
Curr. Opin. Chem. Biol.
, vol.16
, pp. 214-220
-
-
Kolarich, D.1
Lepenies, B.2
Seeberger, P.H.3
-
12
-
-
84861871435
-
Glycoproteomics-based identification of cancer biomarkers
-
Kim, E. H., Misek, D. E., Glycoproteomics-based identification of cancer biomarkers. Int. J. Proteomics 2011, 2011, 601937.
-
(2011)
Int. J. Proteomics
, vol.2011
, pp. 601937
-
-
Kim, E.H.1
Misek, D.E.2
-
13
-
-
0034614637
-
The hallmarks of cancer
-
Hanahan, D., Weinberg, R. A., The hallmarks of cancer. Cell 2000, 100, 57-70.
-
(2000)
Cell
, vol.100
, pp. 57-70
-
-
Hanahan, D.1
Weinberg, R.A.2
-
14
-
-
4644312266
-
Biology of gastrointestinal stromal tumors
-
Corless, C. L., Fletcher, J. A., Heinrich, M. C., Biology of gastrointestinal stromal tumors. J. Clin. Oncol. 2004, 22, 3813-3825.
-
(2004)
J. Clin. Oncol.
, vol.22
, pp. 3813-3825
-
-
Corless, C.L.1
Fletcher, J.A.2
Heinrich, M.C.3
-
15
-
-
70350013557
-
Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes
-
Choudhary, C., Olsen, J. V., Brandts, C., Cox, J. et al., Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes. Mol. Cell 2009, 36, 326-339.
-
(2009)
Mol. Cell
, vol.36
, pp. 326-339
-
-
Choudhary, C.1
Olsen, J.V.2
Brandts, C.3
Cox, J.4
-
16
-
-
26844486610
-
Phosphoproteome analysis of HeLa cells using stable isotope labeling with amino acids in cell culture (SILAC)
-
Amanchy, R., Kalume, D. E., Iwahori, A., Zhong, J. et al., Phosphoproteome analysis of HeLa cells using stable isotope labeling with amino acids in cell culture (SILAC). J. Proteome Res. 2005, 4, 1661-1671.
-
(2005)
J. Proteome Res.
, vol.4
, pp. 1661-1671
-
-
Amanchy, R.1
Kalume, D.E.2
Iwahori, A.3
Zhong, J.4
-
17
-
-
55249083335
-
Identification of c-Src tyrosine kinase substrates using mass spectrometry and peptide microarrays
-
Amanchy, R., Zhong, J., Molina, H., Chaerkady, R. et al., Identification of c-Src tyrosine kinase substrates using mass spectrometry and peptide microarrays. J. Proteome Res. 2008, 7, 3900-3910.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 3900-3910
-
-
Amanchy, R.1
Zhong, J.2
Molina, H.3
Chaerkady, R.4
-
18
-
-
67650901206
-
Quantitative cell signalling analysis reveals down-regulation of MAPK pathway activation in colorectal cancer
-
Gulmann, C., Sheehan, K. M., Conroy, R. M., Wulfkuhle, J. D. et al., Quantitative cell signalling analysis reveals down-regulation of MAPK pathway activation in colorectal cancer. J. Pathol. 2009, 218, 514-519.
-
(2009)
J. Pathol.
, vol.218
, pp. 514-519
-
-
Gulmann, C.1
Sheehan, K.M.2
Conroy, R.M.3
Wulfkuhle, J.D.4
-
19
-
-
54749135378
-
LKB1 is necessary for Akt-mediated phosphorylation of proapoptotic proteins
-
Zhong, D., Liu, X., Khuri, F. R., Sun, S. Y. et al., LKB1 is necessary for Akt-mediated phosphorylation of proapoptotic proteins. Cancer. Res. 2008, 68, 7270-7277.
-
(2008)
Cancer. Res.
, vol.68
, pp. 7270-7277
-
-
Zhong, D.1
Liu, X.2
Khuri, F.R.3
Sun, S.Y.4
-
20
-
-
33746051332
-
Enrichment of integral membrane proteins from small amounts of brain tissue
-
Schindler, J., Jung, S., Niedner-Schatteburg, G., Friauf, E. et al., Enrichment of integral membrane proteins from small amounts of brain tissue. J. Neural. Transm. 2006, 113, 995-1013.
-
(2006)
J. Neural. Transm.
, vol.113
, pp. 995-1013
-
-
Schindler, J.1
Jung, S.2
Niedner-Schatteburg, G.3
Friauf, E.4
-
21
-
-
72449200207
-
Membrane proteomics for leukemia classification and drug target identification
-
Kohnke, P. L., Mulligan, S. P., Christopherson, R. I., Membrane proteomics for leukemia classification and drug target identification. Curr. Opin. Mol. Ther. 2009, 11, 603-610.
-
(2009)
Curr. Opin. Mol. Ther.
, vol.11
, pp. 603-610
-
-
Kohnke, P.L.1
Mulligan, S.P.2
Christopherson, R.I.3
-
22
-
-
0345873477
-
An optimized method for the isolation and identification of membrane proteins
-
Lehner, I., Niehof, M., Borlak, J., An optimized method for the isolation and identification of membrane proteins. Electrophoresis 2003, 24, 1795-1808.
-
(2003)
Electrophoresis
, vol.24
, pp. 1795-1808
-
-
Lehner, I.1
Niehof, M.2
Borlak, J.3
-
23
-
-
84860344567
-
Analysis of a membrane-enriched proteome from postmortem human brain tissue in Alzheimer's disease
-
Donovan, L. E., Higginbotham, L., Dammer, E. B., Gearing, M. et al., Analysis of a membrane-enriched proteome from postmortem human brain tissue in Alzheimer's disease. Proteomics Clin. Appl. 2012, 6, 201-211.
-
(2012)
Proteomics Clin. Appl.
, vol.6
, pp. 201-211
-
-
Donovan, L.E.1
Higginbotham, L.2
Dammer, E.B.3
Gearing, M.4
-
24
-
-
84858049725
-
Protein profiling of microdomains purified from renal cell carcinoma and normal kidney tissue samples
-
Raimondo, F., Morosi, L., Chinello, C., Perego, R. et al., Protein profiling of microdomains purified from renal cell carcinoma and normal kidney tissue samples. Mol. Biosyst. 2012, 8, 1007-1016.
-
(2012)
Mol. Biosyst.
, vol.8
, pp. 1007-1016
-
-
Raimondo, F.1
Morosi, L.2
Chinello, C.3
Perego, R.4
-
25
-
-
77953762037
-
Proteome analysis of a plasma membrane-enriched fraction at the placental feto-maternal barrier
-
Zhang, Q., Schulenborg, T., Tan, T., Lang, B. et al. Proteome analysis of a plasma membrane-enriched fraction at the placental feto-maternal barrier. Proteomics Clin. Appl. 2010, 4, 538-549.
-
(2010)
Proteomics Clin. Appl.
, vol.4
, pp. 538-549
-
-
Zhang, Q.1
Schulenborg, T.2
Tan, T.3
Lang, B.4
-
26
-
-
84865808745
-
Cell surface protein biotinylation for SDS-PAGE analysis
-
Elia, G., Cell surface protein biotinylation for SDS-PAGE analysis. Methods Mol. Biol. 2012, 869, 361-372.
-
(2012)
Methods Mol. Biol.
, vol.869
, pp. 361-372
-
-
Elia, G.1
-
27
-
-
84869503250
-
Plasma membrane proteomics identifies bone marrow stromal antigen 2 as a potential therapeutic target in endometrial cancer
-
Yokoyama, T., Enomoto, T., Serada, S., Morimoto, A. et al., Plasma membrane proteomics identifies bone marrow stromal antigen 2 as a potential therapeutic target in endometrial cancer. Int. J. Cancer 2013, 132, 472-484.
-
(2013)
Int. J. Cancer
, vol.132
, pp. 472-484
-
-
Yokoyama, T.1
Enomoto, T.2
Serada, S.3
Morimoto, A.4
-
28
-
-
61349113308
-
Purification of low-abundance Arabidopsis plasma-membrane protein complexes and identification of candidate components
-
Qi, Y., Katagiri, F., Purification of low-abundance Arabidopsis plasma-membrane protein complexes and identification of candidate components. Plant J. 2009, 57, 932-944.
-
(2009)
Plant J.
, vol.57
, pp. 932-944
-
-
Qi, Y.1
Katagiri, F.2
-
29
-
-
84906051047
-
Cardiac extracellular proteome profiling and membrane topology analysis using glycoproteomics
-
Tian, Y., Koganti, T., Yao, Z., Cannon, P. et al., Cardiac extracellular proteome profiling and membrane topology analysis using glycoproteomics. Prot. Clin. Appl. 2014, 8, 595-602.
-
(2014)
Prot. Clin. Appl
, vol.8
, pp. 595-602
-
-
Tian, Y.1
Koganti, T.2
Yao, Z.3
Cannon, P.4
-
30
-
-
84903692527
-
Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness
-
Liu, Y., Chen, J., Sethi, A., Li, Q. K. et al., Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness. Mol. Cell Proteomics 2014, 13, 1753-1768.
-
(2014)
Mol. Cell Proteomics
, vol.13
, pp. 1753-1768
-
-
Liu, Y.1
Chen, J.2
Sethi, A.3
Li, Q.K.4
-
31
-
-
84901987907
-
Glycoproteomic and glycomic databases
-
Baycin Hizal D., Wolozny, D., Colao, J., Jacobson, E. et al. Glycoproteomic and glycomic databases. Clin. Proteomics 2014, 11, 15.
-
(2014)
Clin. Proteomics
, vol.11
, pp. 15
-
-
Baycin Hizal, D.1
Wolozny, D.2
Colao, J.3
Jacobson, E.4
-
32
-
-
84903779338
-
Glycoproteomic analysis identifies human glycoproteins secreted from HIV latently infected T cells and reveals their presence in HIV+ plasma
-
Yang, W., Zhou, J. Y., Chen, L., Ao, M. et al. Glycoproteomic analysis identifies human glycoproteins secreted from HIV latently infected T cells and reveals their presence in HIV+ plasma. Clin. Proteomics 2014, 11, 9.
-
(2014)
Clin. Proteomics
, vol.11
, pp. 9
-
-
Yang, W.1
Zhou, J.Y.2
Chen, L.3
Ao, M.4
-
33
-
-
84881222169
-
Identification, prioritization, and evaluation of glycoproteins for aggressive prostate cancer using quantitative glycoproteomics and antibody-based assays on tissue specimens
-
Chen, J., Xi, J., Tian, Y., Bova, G. S., et al., Identification, prioritization, and evaluation of glycoproteins for aggressive prostate cancer using quantitative glycoproteomics and antibody-based assays on tissue specimens. Proteomics 2013, 13, 2268-2277.
-
(2013)
Proteomics
, vol.13
, pp. 2268-2277
-
-
Chen, J.1
Xi, J.2
Tian, Y.3
Bova, G.S.4
-
34
-
-
84873948403
-
Characterization of disease-associated N-linked glycoproteins
-
Tian, Y., Zhang, H., Characterization of disease-associated N-linked glycoproteins. Proteomics 2013, 13, 504-511.
-
(2013)
Proteomics
, vol.13
, pp. 504-511
-
-
Tian, Y.1
Zhang, H.2
-
35
-
-
84863206749
-
Application of glycoproteomics for the discovery of biomarkers in lung cancer
-
Li, Q. K., Gabrielson, E., Zhang, H., Application of glycoproteomics for the discovery of biomarkers in lung cancer. Proteomics Clin. Appl. 2012, 6, 244-256.
-
(2012)
Proteomics Clin. Appl.
, vol.6
, pp. 244-256
-
-
Li, Q.K.1
Gabrielson, E.2
Zhang, H.3
-
36
-
-
84863806531
-
Metabolic flux increases glycoprotein sialylation: implications for cell adhesion and cancer metastasis
-
M112 017558
-
Almaraz, R. T., Tian, Y., Bhattarcharya, R., Tan, E. et al., Metabolic flux increases glycoprotein sialylation: implications for cell adhesion and cancer metastasis. Mol. Cell Proteomics 2012, 11, M112 017558.
-
(2012)
Mol. Cell Proteomics
, vol.11
-
-
Almaraz, R.T.1
Tian, Y.2
Bhattarcharya, R.3
Tan, E.4
-
37
-
-
84876337044
-
Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS
-
Liu, Y., Huttenhain, R., Surinova, S., Gillet, L. C. et al., Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS. Proteomics 2013, 13, 1247-1256.
-
(2013)
Proteomics
, vol.13
, pp. 1247-1256
-
-
Liu, Y.1
Huttenhain, R.2
Surinova, S.3
Gillet, L.C.4
-
38
-
-
84875969679
-
N-glycoprotein SRMAtlas: a resource of mass spectrometric assays for N-glycosites enabling consistent and multiplexed protein quantification for clinical applications
-
Huttenhain, R., Surinova, S., Ossola, R., Sun, Z. et al., N-glycoprotein SRMAtlas: a resource of mass spectrometric assays for N-glycosites enabling consistent and multiplexed protein quantification for clinical applications. Mol. Cell Proteomics 2013, 12, 1005-1016.
-
(2013)
Mol. Cell Proteomics
, vol.12
, pp. 1005-1016
-
-
Huttenhain, R.1
Surinova, S.2
Ossola, R.3
Sun, Z.4
-
39
-
-
84901061074
-
Identification of a seven glycopeptide signature for malignant pleural mesothelioma in human serum by selected reaction monitoring
-
Cerciello, F., Choi, M., Nicastri, A., Bausch-Fluck, D. et al., Identification of a seven glycopeptide signature for malignant pleural mesothelioma in human serum by selected reaction monitoring. Clin. Proteomics 2013, 10, 16.
-
(2013)
Clin. Proteomics
, vol.10
, pp. 16
-
-
Cerciello, F.1
Choi, M.2
Nicastri, A.3
Bausch-Fluck, D.4
-
40
-
-
84923081608
-
Quantitative mass spectrometric analysis of glycoproteins combined with enrichment methods
-
Ahn, Y. H., Kim, J. Y., Yoo, J. S. Quantitative mass spectrometric analysis of glycoproteins combined with enrichment methods. Mass Spectrom. Rev. 2014, doi: 10.1002/mas.21428
-
(2014)
Mass Spectrom. Rev
-
-
Ahn, Y.H.1
Kim, J.Y.2
Yoo, J.S.3
-
41
-
-
84893456266
-
Identification of salivary N-glycoproteins and measurement of glycosylation site occupancy by boronate glycoprotein enrichment and liquid chromatography/electrospray ionization tandem mass spectrometry
-
Xu, Y., Bailey, U. M., Punyadeera, C., Schulz, B. L., Identification of salivary N-glycoproteins and measurement of glycosylation site occupancy by boronate glycoprotein enrichment and liquid chromatography/electrospray ionization tandem mass spectrometry. Rapid Commun. Mass Spectrom. 2014, 28, 471-482.
-
(2014)
Rapid Commun. Mass Spectrom.
, vol.28
, pp. 471-482
-
-
Xu, Y.1
Bailey, U.M.2
Punyadeera, C.3
Schulz, B.L.4
-
42
-
-
64349089985
-
Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins
-
Wollscheid, B., Bausch-Fluck, D., Henderson, C., O'Brien, R. et al., Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins. Nat. Biotechnol. 2009, 27, 378-386.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 378-386
-
-
Wollscheid, B.1
Bausch-Fluck, D.2
Henderson, C.3
O'Brien, R.4
-
43
-
-
79958187903
-
GlycoFly: a database of drosophila N-linked glycoproteins identified using SPEG-MS techniques
-
Baycin-Hizal, D., Tian, Y., Akan, I., Jacobson, E. et al., GlycoFly: a database of drosophila N-linked glycoproteins identified using SPEG-MS techniques. J. Proteome Res. 2011, 10, 2777-2784.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 2777-2784
-
-
Baycin-Hizal, D.1
Tian, Y.2
Akan, I.3
Jacobson, E.4
-
44
-
-
34250014373
-
Solid-phase extraction of N-linked glycopeptides
-
Tian, Y., Zhou, Y., Elliott, S., Aebersold, R. et al., Solid-phase extraction of N-linked glycopeptides. Nat. Protoc. 2007, 2, 334-339.
-
(2007)
Nat. Protoc
, vol.2
, pp. 334-339
-
-
Tian, Y.1
Zhou, Y.2
Elliott, S.3
Aebersold, R.4
-
45
-
-
84900385507
-
Glycopeptide capture for cell surface proteomics
-
Lee, M. C., Sun, B., Glycopeptide capture for cell surface proteomics. J. Vis. Exp. 2014, 87, e51349.
-
(2014)
J. Vis. Exp.
, vol.87
, pp. e51349
-
-
Lee, M.C.1
Sun, B.2
-
46
-
-
84870241467
-
A new method for quantitative analysis of cell surface glycoproteome
-
Sun, Z., Chen, R., Cheng, K., Liu, H. et al., A new method for quantitative analysis of cell surface glycoproteome. Proteomics 2012, 12, 3328-3337.
-
(2012)
Proteomics
, vol.12
, pp. 3328-3337
-
-
Sun, Z.1
Chen, R.2
Cheng, K.3
Liu, H.4
-
47
-
-
84893178816
-
Characterization of the membrane proteome and N-glycoproteome in BV-2 mouse microglia by liquid chromatography-tandem mass spectrometry
-
Han, D., Moon, S., Kim, Y., Min, H. et al., Characterization of the membrane proteome and N-glycoproteome in BV-2 mouse microglia by liquid chromatography-tandem mass spectrometry. BMC Genomics 2014, 15, 95.
-
(2014)
BMC Genomics
, vol.15
, pp. 95
-
-
Han, D.1
Moon, S.2
Kim, Y.3
Min, H.4
-
48
-
-
0038699625
-
Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry
-
Zhang, H., Li, X. J., Martin, D. B., Aebersold, R., Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat. Biotechnol. 2003, 21, 660-666.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 660-666
-
-
Zhang, H.1
Li, X.J.2
Martin, D.B.3
Aebersold, R.4
-
49
-
-
84871954135
-
Glycoproteomics enabled by tagging sialic acid- or galactose-terminated glycans
-
Ramya, T. N., Weerapana, E., Cravatt, B. F., Paulson, J. C. Glycoproteomics enabled by tagging sialic acid- or galactose-terminated glycans. Glycobiology 2013, 23, 211-221.
-
(2013)
Glycobiology
, vol.23
, pp. 211-221
-
-
Ramya, T.N.1
Weerapana, E.2
Cravatt, B.F.3
Paulson, J.C.4
-
50
-
-
84874601536
-
Enrichment of plasma membrane proteins using nanoparticle pellicles: comparison between silica and higher density nanoparticles
-
Choksawangkarn, W., Kim, S. K., Cannon, J. R., Edwards, N. J. et al., Enrichment of plasma membrane proteins using nanoparticle pellicles: comparison between silica and higher density nanoparticles. J. Proteome Res. 2013, 12, 1134-1141.
-
(2013)
J. Proteome Res.
, vol.12
, pp. 1134-1141
-
-
Choksawangkarn, W.1
Kim, S.K.2
Cannon, J.R.3
Edwards, N.J.4
-
51
-
-
79960952981
-
Use of colloidal silica-beads for the isolation of cell-surface proteins for mass spectrometry-based proteomics
-
Kim, Y., Elschenbroich, S., Sharma, P., Sepiashvili, L. et al., Use of colloidal silica-beads for the isolation of cell-surface proteins for mass spectrometry-based proteomics. Methods Mol. Biol. 2011, 748, 227-241.
-
(2011)
Methods Mol. Biol.
, vol.748
, pp. 227-241
-
-
Kim, Y.1
Elschenbroich, S.2
Sharma, P.3
Sepiashvili, L.4
-
52
-
-
84856972243
-
A placental sub-proteome: the apical plasma membrane of the syncytiotrophoblast
-
Vandre, D. D., Ackerman, W. E. t., Tewari, A., Kniss, D. A. et al., A placental sub-proteome: the apical plasma membrane of the syncytiotrophoblast. Placenta 2012, 33, 207-213.
-
(2012)
Placenta
, vol.33
, pp. 207-213
-
-
Vandre, D.D.1
Ackerman, W.E.t.2
Tewari, A.3
Kniss, D.A.4
-
53
-
-
56449086663
-
Evaluation of two cell surface modification methods for proteomic analysis of plasma membrane from isolated mouse hepatocytes
-
Li, X., Jin, Q., Cao, J., Xie, C. et al., Evaluation of two cell surface modification methods for proteomic analysis of plasma membrane from isolated mouse hepatocytes. Biochim. Biophys. Acta 2009, 1794, 32-41.
-
(2009)
Biochim. Biophys. Acta
, vol.1794
, pp. 32-41
-
-
Li, X.1
Jin, Q.2
Cao, J.3
Xie, C.4
-
54
-
-
60849103514
-
An in vivo membrane density perturbation strategy for identification of liver sinusoidal surface proteome accessible from the vasculature
-
Li, X., Xie, C., Cao, J., He, Q. et al., An in vivo membrane density perturbation strategy for identification of liver sinusoidal surface proteome accessible from the vasculature. J. Proteome Res. 2009, 8, 123-132.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 123-132
-
-
Li, X.1
Xie, C.2
Cao, J.3
He, Q.4
-
55
-
-
66149125323
-
Analysis of cell surface proteome changes via label-free, quantitative mass spectrometry
-
Schiess, R., Mueller, L. N., Schmidt, A., Mueller, M. et al., Analysis of cell surface proteome changes via label-free, quantitative mass spectrometry. Mol. Cell Proteomics 2009, 8, 624-638.
-
(2009)
Mol. Cell Proteomics
, vol.8
, pp. 624-638
-
-
Schiess, R.1
Mueller, L.N.2
Schmidt, A.3
Mueller, M.4
-
56
-
-
33846548168
-
Mass spectrometric detection of tissue proteins in plasma
-
Zhang, H., Liu, A. Y., Loriaux, P., Wollscheid, B. et al., Mass spectrometric detection of tissue proteins in plasma. Mol. Cell Proteomics 2007, 6, 64-71.
-
(2007)
Mol. Cell Proteomics
, vol.6
, pp. 64-71
-
-
Zhang, H.1
Liu, A.Y.2
Loriaux, P.3
Wollscheid, B.4
-
57
-
-
84861860481
-
Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis
-
O111 016717
-
Gillet, L. C., Navarro, P., Tate, S., Rost, H. et al., Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis. Mol. Cell Proteomics 2012, 11, O111 016717.
-
(2012)
Mol. Cell Proteomics
, vol.11
-
-
Gillet, L.C.1
Navarro, P.2
Tate, S.3
Rost, H.4
-
58
-
-
84887359663
-
Mass spectrometric protein maps for biomarker discovery and clinical research
-
Liu, Y., Huttenhain, R., Collins, B., Aebersold, R., Mass spectrometric protein maps for biomarker discovery and clinical research. Expert. Rev. Mol. Diagn 2013, 13, 811-825.
-
(2013)
Expert. Rev. Mol. Diagn
, vol.13
, pp. 811-825
-
-
Liu, Y.1
Huttenhain, R.2
Collins, B.3
Aebersold, R.4
-
59
-
-
20144383119
-
High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry
-
Zhang, H., Yi, E. C., Li, X. J., Mallick, P. et al., High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry. Mol. Cell Proteomics 2005, 4, 144-155.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 144-155
-
-
Zhang, H.1
Yi, E.C.2
Li, X.J.3
Mallick, P.4
-
60
-
-
84873368065
-
Statistical inference from multiple iTRAQ experiments without using common reference standards
-
Herbrich, S. M., Cole, R. N., West, K. P., Jr., Schulze, K. et al., Statistical inference from multiple iTRAQ experiments without using common reference standards. J. Proteome Res. 2013, 12, 594-604.
-
(2013)
J. Proteome Res.
, vol.12
, pp. 594-604
-
-
Herbrich, S.M.1
Cole, R.N.2
West Jr, K.P.3
Schulze, K.4
-
61
-
-
84887076843
-
Plasma membrane proteomics of tumor spheres identify CD166 as a novel marker for cancer stem-like cells in head and neck squamous cell carcinoma
-
Yan, M., Yang, X., Wang, L., Clark, D. et al., Plasma membrane proteomics of tumor spheres identify CD166 as a novel marker for cancer stem-like cells in head and neck squamous cell carcinoma. Mol. Cell Proteomics 2013, 12, 3271-3284.
-
(2013)
Mol. Cell Proteomics
, vol.12
, pp. 3271-3284
-
-
Yan, M.1
Yang, X.2
Wang, L.3
Clark, D.4
-
62
-
-
0037685263
-
Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins
-
Kaji, H., Saito, H., Yamauchi, Y., Shinkawa, T. et al., Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins. Nat. Biotechnol. 2003, 21, 667-672.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 667-672
-
-
Kaji, H.1
Saito, H.2
Yamauchi, Y.3
Shinkawa, T.4
-
63
-
-
0347134596
-
Affinity enrichment of plasma membrane for proteomics analysis
-
Zhang, W., Zhou, G., Zhao, Y., White, M. A. et al., Affinity enrichment of plasma membrane for proteomics analysis. Electrophoresis 2003, 24, 2855-2863.
-
(2003)
Electrophoresis
, vol.24
, pp. 2855-2863
-
-
Zhang, W.1
Zhou, G.2
Zhao, Y.3
White, M.A.4
-
64
-
-
61849134438
-
Reducing agent-mediated precipitation of high-abundance plasma proteins
-
Warder, S.E., Tucker, L. A., Strelitzer, T. J., McKeegan, E. M. et al., Reducing agent-mediated precipitation of high-abundance plasma proteins. Anal. Biochem. 2009, 387, 184-193.
-
(2009)
Anal. Biochem.
, vol.387
, pp. 184-193
-
-
Warder, S.E.1
Tucker, L.A.2
Strelitzer, T.J.3
McKeegan, E.M.4
-
65
-
-
84874800120
-
A fast and reproducible method for albumin isolation and depletion from serum and cerebrospinal fluid
-
Holewinski, R. J., Jin, Z. C., Powell, M. J., Maust, M. D. et al., A fast and reproducible method for albumin isolation and depletion from serum and cerebrospinal fluid. Proteomics 2013, 13, 743-750.
-
(2013)
Proteomics
, vol.13
, pp. 743-750
-
-
Holewinski, R.J.1
Jin, Z.C.2
Powell, M.J.3
Maust, M.D.4
-
66
-
-
84883199030
-
Analysis of peptides by denaturing ultrafiltration and LC-MALDI-TOF-MS
-
An, Y., Goldman, R., Analysis of peptides by denaturing ultrafiltration and LC-MALDI-TOF-MS. Methods Mol. Biol. 2013, 1023, 13-19.
-
(2013)
Methods Mol. Biol.
, vol.1023
, pp. 13-19
-
-
An, Y.1
Goldman, R.2
-
67
-
-
84870391101
-
Discovery of serum proteomic biomarkers for prediction of response to infliximab (a monoclonal anti-TNF antibody) treatment in rheumatoid arthritis: an exploratory analysis
-
Ortea, I., Roschitzki, B., Ovalles, J. G., Longo, J. L. et al., Discovery of serum proteomic biomarkers for prediction of response to infliximab (a monoclonal anti-TNF antibody) treatment in rheumatoid arthritis: an exploratory analysis. J. Proteomics 2012, 77, 372-382.
-
(2012)
J. Proteomics
, vol.77
, pp. 372-382
-
-
Ortea, I.1
Roschitzki, B.2
Ovalles, J.G.3
Longo, J.L.4
-
68
-
-
84885734352
-
The plasma proteome identifies expected and novel proteins correlated with micronutrient status in undernourished nepalese children
-
Cole, R. N., Ruczinski, I., Schulze, K., Christian, P. et al., The plasma proteome identifies expected and novel proteins correlated with micronutrient status in undernourished nepalese children. J. Nutr. 2013, 143, 1540-1548.
-
(2013)
J. Nutr.
, vol.143
, pp. 1540-1548
-
-
Cole, R.N.1
Ruczinski, I.2
Schulze, K.3
Christian, P.4
-
69
-
-
80052021424
-
Proteomic analysis of cancer stem cells in human prostate cancer cells
-
Lee, E. K., Cho, H., Kim, C. W., Proteomic analysis of cancer stem cells in human prostate cancer cells. Biochem. Biophys. Res. Commun. 2011, 412, 279-285.
-
(2011)
Biochem. Biophys. Res. Commun.
, vol.412
, pp. 279-285
-
-
Lee, E.K.1
Cho, H.2
Kim, C.W.3
-
70
-
-
21144458164
-
Immunoaffinity profiling of tyrosine phosphorylation in cancer cells
-
Rush, J., Moritz, A., Lee, K. A., Guo, A. et al., Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. Nat. Biotechnol. 2005, 23, 94-101.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 94-101
-
-
Rush, J.1
Moritz, A.2
Lee, K.A.3
Guo, A.4
-
71
-
-
53049108920
-
Global impact of oncogenic Src on a phosphotyrosine proteome
-
Luo, W., Slebos, R. J., Hill, S., Li, M. et al., Global impact of oncogenic Src on a phosphotyrosine proteome. J. Proteome Res. 2008, 7, 3447-3460.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 3447-3460
-
-
Luo, W.1
Slebos, R.J.2
Hill, S.3
Li, M.4
-
72
-
-
77954572010
-
Quantitative phosphoproteomic analysis of T cell receptor signaling in diabetes prone and resistant mice
-
Iwai, L. K., Benoist, C., Mathis, D., White, F. M., Quantitative phosphoproteomic analysis of T cell receptor signaling in diabetes prone and resistant mice. J. Proteome Res. 2010, 9, 3135-3145.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 3135-3145
-
-
Iwai, L.K.1
Benoist, C.2
Mathis, D.3
White, F.M.4
-
73
-
-
84895546954
-
Phosphorylation of mutant huntingtin at serine 116 modulates neuronal toxicity
-
Watkin, E. E., Arbez, N., Waldron-Roby, E., O'Meally, R. et al., Phosphorylation of mutant huntingtin at serine 116 modulates neuronal toxicity. PLoS One 2014, 9, e88284.
-
(2014)
PLoS One
, vol.9
, pp. e88284
-
-
Watkin, E.E.1
Arbez, N.2
Waldron-Roby, E.3
O'Meally, R.4
-
74
-
-
84862317369
-
TSLP signaling network revealed by SILAC-based phosphoproteomics
-
M112 017764
-
Zhong, J., Kim, M. S., Chaerkady, R., Wu, X. et al., TSLP signaling network revealed by SILAC-based phosphoproteomics. Mol. Cell Proteomics 2012, 11, M112 017764.
-
(2012)
Mol. Cell Proteomics
, vol.11
-
-
Zhong, J.1
Kim, M.S.2
Chaerkady, R.3
Wu, X.4
-
75
-
-
74549168922
-
Identifying drug effects via pathway alterations using an integer linear programming optimization formulation on phosphoproteomic data
-
Mitsos, A., Melas, I. N., Siminelakis, P., Chairakaki, A. D. et al., Identifying drug effects via pathway alterations using an integer linear programming optimization formulation on phosphoproteomic data. PLoS Comput. Biol. 2009, 5, e1000591.
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. e1000591
-
-
Mitsos, A.1
Melas, I.N.2
Siminelakis, P.3
Chairakaki, A.D.4
-
76
-
-
67849121794
-
Phosphoproteomic analysis of human embryonic stem cells
-
Brill, L. M., Xiong, W., Lee, K. B., Ficarro, S. B. et al., Phosphoproteomic analysis of human embryonic stem cells. Cell Stem Cell 2009, 5, 204-213.
-
(2009)
Cell Stem Cell
, vol.5
, pp. 204-213
-
-
Brill, L.M.1
Xiong, W.2
Lee, K.B.3
Ficarro, S.B.4
-
77
-
-
29144511607
-
MAPK signalling pathways as molecular targets for anti-inflammatory therapy-from molecular mechanisms to therapeutic benefits
-
Kaminska, B., MAPK signalling pathways as molecular targets for anti-inflammatory therapy-from molecular mechanisms to therapeutic benefits. Biochim. Biophys. Acta 2005, 1754, 253-262.
-
(2005)
Biochim. Biophys. Acta
, vol.1754
, pp. 253-262
-
-
Kaminska, B.1
-
78
-
-
33646165882
-
New approaches to the treatment of inflammatory disorders small molecule inhibitors of p38 MAP kinase
-
Peifer, C., Wagner, G., Laufer, S., New approaches to the treatment of inflammatory disorders small molecule inhibitors of p38 MAP kinase. Curr. Top Med. Chem. 2006, 6, 113-149.
-
(2006)
Curr. Top Med. Chem.
, vol.6
, pp. 113-149
-
-
Peifer, C.1
Wagner, G.2
Laufer, S.3
-
79
-
-
33845432866
-
Regulating insulin signaling and beta-cell function through IRS proteins
-
White, M. F., Regulating insulin signaling and beta-cell function through IRS proteins. Can. J. Physiol. Pharmacol. 2006, 84, 725-737.
-
(2006)
Can. J. Physiol. Pharmacol.
, vol.84
, pp. 725-737
-
-
White, M.F.1
-
80
-
-
79960821208
-
Discovery of cellular substrates for protein kinase A using a peptide array screening protocol
-
Smith, F. D., Samelson, B. K., Scott, J. D., Discovery of cellular substrates for protein kinase A using a peptide array screening protocol. Biochem. J. 2011, 438, 103-110.
-
(2011)
Biochem. J.
, vol.438
, pp. 103-110
-
-
Smith, F.D.1
Samelson, B.K.2
Scott, J.D.3
-
81
-
-
84910660856
-
Heterogeneity of pancreatic cancer metastases in a single patient revealed by quantitative proteomics
-
Min-Sik Kim, Y. Z., Shinchi Yachida, N. V., Kumar R., Abel M. L. et al., Heterogeneity of pancreatic cancer metastases in a single patient revealed by quantitative proteomics. Am. Soc. Biochem. Mol. Biol. 2014, 13, 2803-2811.
-
(2014)
Am. Soc. Biochem. Mol. Biol.
, vol.13
, pp. 2803-2811
-
-
Min-Sik Kim, Y.Z.1
Shinchi Yachida, N.V.2
Kumar, R.3
Abel, M.L.4
-
82
-
-
79952177511
-
Identification of novel phosphorylation motifs through an integrative computational and experimental analysis of the human phosphoproteome
-
Amanchy, R., Kandasamy, K., Mathivanan, S., Periaswamy, B. et al., Identification of novel phosphorylation motifs through an integrative computational and experimental analysis of the human phosphoproteome. J. Proteomics Bioinform. 2011, 4, 22-35.
-
(2011)
J. Proteomics Bioinform.
, vol.4
, pp. 22-35
-
-
Amanchy, R.1
Kandasamy, K.2
Mathivanan, S.3
Periaswamy, B.4
-
83
-
-
9144236198
-
Human protein reference database as a discovery resource for proteomics
-
Peri, S., Navarro, J. D., Kristiansen, T. Z., Amanchy, R. et al., Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res. 2004, 32, D497-D501.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D497-D501
-
-
Peri, S.1
Navarro, J.D.2
Kristiansen, T.Z.3
Amanchy, R.4
-
84
-
-
10744224197
-
Development of human protein reference database as an initial platform for approaching systems biology in humans
-
Peri, S., Navarro, J. D., Amanchy, R., Kristiansen, T. Z. et al., Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Res. 2003, 13, 2363-2371.
-
(2003)
Genome Res.
, vol.13
, pp. 2363-2371
-
-
Peri, S.1
Navarro, J.D.2
Amanchy, R.3
Kristiansen, T.Z.4
-
85
-
-
38949210266
-
Human Proteinpedia enables sharing of human protein data
-
Mathivanan, S., Ahmed, M., Ahn, N. G., Alexandre, H. et al., Human Proteinpedia enables sharing of human protein data. Nat. Biotechnol. 2008, 26, 164-167.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 164-167
-
-
Mathivanan, S.1
Ahmed, M.2
Ahn, N.G.3
Alexandre, H.4
-
86
-
-
58149202157
-
Human Proteinpedia: a unified discovery resource for proteomics research
-
Kandasamy, K., Keerthikumar, S., Goel, R., Mathivanan, S. et al., Human Proteinpedia: a unified discovery resource for proteomics research. Nucleic Acids Res. 2009, 37, D773-D781.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D773-D781
-
-
Kandasamy, K.1
Keerthikumar, S.2
Goel, R.3
Mathivanan, S.4
-
87
-
-
84855658379
-
Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis
-
Goel, R., Harsha, H. C., Pandey, A., Prasad, T. S., Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis. Mol. Biosyst. 2012, 8, 453-463.
-
(2012)
Mol. Biosyst.
, vol.8
, pp. 453-463
-
-
Goel, R.1
Harsha, H.C.2
Pandey, A.3
Prasad, T.S.4
-
88
-
-
0035478709
-
Analysis of phosphorylated proteins and peptides by mass spectrometry
-
McLachlin, D. T., Chait, B. T., Analysis of phosphorylated proteins and peptides by mass spectrometry. Curr. Opin. Chem. Biol. 2001, 5, 591-602.
-
(2001)
Curr. Opin. Chem. Biol.
, vol.5
, pp. 591-602
-
-
McLachlin, D.T.1
Chait, B.T.2
-
89
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R., Mann, M., Mass spectrometry-based proteomics. Nature 2003, 422, 198-207.
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
90
-
-
0035987473
-
Identification of the phosphotyrosine proteome from thrombin activated platelets
-
Maguire, P. B., Wynne, K. J., Harney, D. F., O'Donoghue, N. M. et al., Identification of the phosphotyrosine proteome from thrombin activated platelets. Proteomics 2002, 2, 642-648.
-
(2002)
Proteomics
, vol.2
, pp. 642-648
-
-
Maguire, P.B.1
Wynne, K.J.2
Harney, D.F.3
O'Donoghue, N.M.4
-
91
-
-
21144445429
-
Phosphotyrosine proteomic study of interferon alpha signaling pathway using a combination of immunoprecipitation and immobilized metal affinity chromatography
-
Zheng, H., Hu, P., Quinn, D. F., Wang, Y. K., Phosphotyrosine proteomic study of interferon alpha signaling pathway using a combination of immunoprecipitation and immobilized metal affinity chromatography. Mol. Cell Proteomics 2005, 4, 721-730.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 721-730
-
-
Zheng, H.1
Hu, P.2
Quinn, D.F.3
Wang, Y.K.4
-
92
-
-
33847782587
-
Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry
-
Molina, H., Horn, D. M., Tang, N., Mathivanan, S. et al., Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry. Proc. Natl. Acad. Sci. USA 2007, 104, 2199-2204.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 2199-2204
-
-
Molina, H.1
Horn, D.M.2
Tang, N.3
Mathivanan, S.4
-
93
-
-
33745585792
-
Phosphoproteomic analysis of Her2/neu signaling and inhibition
-
Bose, R., Molina, H., Patterson, A. S., Bitok, J. K. et al., Phosphoproteomic analysis of Her2/neu signaling and inhibition. Proc. Natl. Acad. Sci. USA 2006, 103, 9773-9778.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 9773-9778
-
-
Bose, R.1
Molina, H.2
Patterson, A.S.3
Bitok, J.K.4
-
94
-
-
40649095957
-
Quantitative proteomics using stable isotope labeling with amino acids in cell culture
-
Harsha, H. C., Molina, H., Pandey, A., Quantitative proteomics using stable isotope labeling with amino acids in cell culture. Nat. Protoc. 2008, 3, 505-516.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 505-516
-
-
Harsha, H.C.1
Molina, H.2
Pandey, A.3
-
95
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen, J. V., Blagoev, B., Gnad, F., Macek, B. et al., Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2006, 127, 635-648.
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
-
96
-
-
78649849874
-
Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation
-
Nagaraj, N., D'Souza, R. C., Cox, J., Olsen, J. V. et al., Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation. J. Proteome Res. 2010, 9, 6786-6794.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 6786-6794
-
-
Nagaraj, N.1
D'Souza, R.C.2
Cox, J.3
Olsen, J.V.4
-
97
-
-
77949686964
-
Phosphoproteome analysis of human liver tissue by long-gradient nanoflow LC coupled with multiple stage MS analysis
-
Han, G., Ye, M., Liu, H., Song, C. et al., Phosphoproteome analysis of human liver tissue by long-gradient nanoflow LC coupled with multiple stage MS analysis. Electrophoresis 2010, 31, 1080-1089.
-
(2010)
Electrophoresis
, vol.31
, pp. 1080-1089
-
-
Han, G.1
Ye, M.2
Liu, H.3
Song, C.4
-
98
-
-
61649097515
-
Temporal perturbation of tyrosine phosphoproteome dynamics reveals the system-wide regulatory networks
-
Oyama, M., Kozuka-Hata, H., Tasaki, S., Semba, K. et al., Temporal perturbation of tyrosine phosphoproteome dynamics reveals the system-wide regulatory networks. Mol. Cell Proteomics 2009, 8, 226-231.
-
(2009)
Mol. Cell Proteomics
, vol.8
, pp. 226-231
-
-
Oyama, M.1
Kozuka-Hata, H.2
Tasaki, S.3
Semba, K.4
-
99
-
-
70450280616
-
Identification of tyrosine-phosphorylated proteins associated with metastasis and functional analysis of FER in human hepatocellular carcinoma cells
-
Li, H., Ren, Z., Kang, X., Zhang, L. et al., Identification of tyrosine-phosphorylated proteins associated with metastasis and functional analysis of FER in human hepatocellular carcinoma cells. BMC Cancer 2009, 9, 366.
-
(2009)
BMC Cancer
, vol.9
, pp. 366
-
-
Li, H.1
Ren, Z.2
Kang, X.3
Zhang, L.4
-
100
-
-
84878654194
-
Extracellular vesicles as prospective carriers of oncogenic protein signatures in adult and paediatric brain tumors
-
Garnier, D. J. N., Rak, J., Extracellular vesicles as prospective carriers of oncogenic protein signatures in adult and paediatric brain tumors. Proteomics 2012, 13, 1595-1607.
-
(2012)
Proteomics
, vol.13
, pp. 1595-1607
-
-
Garnier, D.J.N.1
Rak, J.2
-
101
-
-
84876927914
-
Exosomes reflect the hypoxic status of glioma cells and mediate hypoxia-dependent activation of vascular cells during tumor development
-
Kucharzewska, P., Christianson, H. C., Welch, J. E., Svensson, K. J. et al., Exosomes reflect the hypoxic status of glioma cells and mediate hypoxia-dependent activation of vascular cells during tumor development. Proc. Natl. Acad. Sci. USA 2013, 110, 7312-7317.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 7312-7317
-
-
Kucharzewska, P.1
Christianson, H.C.2
Welch, J.E.3
Svensson, K.J.4
-
102
-
-
80053175966
-
Microvesicles secreted by macrophages shuttle invasion-potentiating microRNAs into breast cancer cells
-
Yang, M., Chen, J., Su, F., Yu, B. et al., Microvesicles secreted by macrophages shuttle invasion-potentiating microRNAs into breast cancer cells. Mol. Cancer 2011, 10, 117.
-
(2011)
Mol. Cancer
, vol.10
, pp. 117
-
-
Yang, M.1
Chen, J.2
Su, F.3
Yu, B.4
-
103
-
-
84897062699
-
Exosomal proteome profiling: a potential multi-marker cellular phenotyping tool to characterize hypoxia-induced radiation resistance in breast cancer
-
Thomas, S. N., Liao, Z., Clark, D., Chen, Y. et al., Exosomal proteome profiling: a potential multi-marker cellular phenotyping tool to characterize hypoxia-induced radiation resistance in breast cancer. Proteomes 2013, 1, 87-108.
-
(2013)
Proteomes
, vol.1
, pp. 87-108
-
-
Thomas, S.N.1
Liao, Z.2
Clark, D.3
Chen, Y.4
-
104
-
-
84905004665
-
Inferring alterations in cell-to-cell communication in HER2+ breast cancer using secretome profiling of three cell models
-
Klinke, D. J., 2nd, Kulkarni, Y. M., Wu, Y., Byrne-Hoffman, C., Inferring alterations in cell-to-cell communication in HER2+ breast cancer using secretome profiling of three cell models. Biotechnol. Bioeng. 2014, 111, 1853-1863.
-
(2014)
Biotechnol. Bioeng.
, vol.111
, pp. 1853-1863
-
-
Klinke 2nd, D.J.1
Kulkarni, Y.M.2
Wu, Y.3
Byrne-Hoffman, C.4
-
105
-
-
84902161469
-
The overexpression of a single oncogene (ERBB2/HER2) alters the proteomic landscape of extracellular vesicles
-
Amorim, M., Fernandes, G., Oliveira, P., Martins-de-Souza, D. et al., The overexpression of a single oncogene (ERBB2/HER2) alters the proteomic landscape of extracellular vesicles. Proteomics 2014, 14, 1472-1479.
-
(2014)
Proteomics
, vol.14
, pp. 1472-1479
-
-
Amorim, M.1
Fernandes, G.2
Oliveira, P.3
Martins-de-Souza, D.4
-
106
-
-
84902192560
-
Proteomic analysis of hypoxia-induced U373MG glioma secretome reveals novel hypoxia-dependent migration factors
-
Yoon, J. H., Kim, J., Kim, K. L., Kim, D. H. et al., Proteomic analysis of hypoxia-induced U373MG glioma secretome reveals novel hypoxia-dependent migration factors. Proteomics 2014, 14, 1494-1502.
-
(2014)
Proteomics
, vol.14
, pp. 1494-1502
-
-
Yoon, J.H.1
Kim, J.2
Kim, K.L.3
Kim, D.H.4
-
107
-
-
84896972245
-
The proteomics of prostate cancer exosomes
-
Drake, R. R., Kislinger, T., The proteomics of prostate cancer exosomes. Expert. Rev. Proteomics 2014, 11, 167-177.
-
(2014)
Expert. Rev. Proteomics
, vol.11
, pp. 167-177
-
-
Drake, R.R.1
Kislinger, T.2
-
108
-
-
84904253489
-
Bladder cancer exosomes contain EDIL-3/del1 and facilitate cancer progression
-
Beckham, C. J., Olsen, J., Yin, P. N., Wu, C. H. et al., Bladder cancer exosomes contain EDIL-3/del1 and facilitate cancer progression. J. Urol. 2014, 192, 583-592.
-
(2014)
J. Urol
, vol.192
, pp. 583-592
-
-
Beckham, C.J.1
Olsen, J.2
Yin, P.N.3
Wu, C.H.4
-
109
-
-
84898764220
-
Proteomics analysis of cancer exosomes using a novel modified aptamer-based array (SOMAscan) platform
-
Webber, J., Stone, T. C., Katilius, E., Smith, B. C., Gordon, B. et al., Proteomics analysis of cancer exosomes using a novel modified aptamer-based array (SOMAscan) platform. Mol. Cell Proteomics 2014, 13, 1050-1064.
-
(2014)
Mol. Cell Proteomics
, vol.13
, pp. 1050-1064
-
-
Webber, J.1
Stone, T.C.2
Katilius, E.3
Smith, B.C.4
Gordon, B.5
-
110
-
-
84897370572
-
In-depth proteomic analyses of ovarian cancer cell line exosomes reveals differential enrichment of functional categories compared to the NCI 60 proteome
-
Sinha, A., Ignatchenko, V., Ignatchenko, A., Mejia-Guerrero, S. et al., In-depth proteomic analyses of ovarian cancer cell line exosomes reveals differential enrichment of functional categories compared to the NCI 60 proteome. Biochem. Biophys. Res. Commun. 2014, 445, 694-701.
-
(2014)
Biochem. Biophys. Res. Commun.
, vol.445
, pp. 694-701
-
-
Sinha, A.1
Ignatchenko, V.2
Ignatchenko, A.3
Mejia-Guerrero, S.4
-
111
-
-
84895744810
-
Quantitative proteomics of fractionated membrane and lumen exosome proteins from isogenic metastatic and nonmetastatic bladder cancer cells reveal differential expression of EMT factors
-
Jeppesen, D. K., Nawrocki, A., Jensen, S. G., Thorsen, K. et al., Quantitative proteomics of fractionated membrane and lumen exosome proteins from isogenic metastatic and nonmetastatic bladder cancer cells reveal differential expression of EMT factors. Proteomics 2014, 14, 699-712.
-
(2014)
Proteomics
, vol.14
, pp. 699-712
-
-
Jeppesen, D.K.1
Nawrocki, A.2
Jensen, S.G.3
Thorsen, K.4
-
112
-
-
84920770459
-
Exosomal ITGA3 interferes with non-cancerous prostate cell functions and is increased in urine exosomes of metastatic prostate cancer patients
-
Bijnsdorp, I. V., Geldof, A. A., Lavaei, M., Piersma, S. R. et al., Exosomal ITGA3 interferes with non-cancerous prostate cell functions and is increased in urine exosomes of metastatic prostate cancer patients. J. Extracell Vesicles 2013, 2, doi: 10.3402/jev.v2i0.22097
-
(2013)
J. Extracell Vesicles
, vol.2
-
-
Bijnsdorp, I.V.1
Geldof, A.A.2
Lavaei, M.3
Piersma, S.R.4
-
113
-
-
84888384111
-
Unexpected gain of function for the scaffolding protein plectin due to mislocalization in pancreatic cancer
-
Shin, S. J., Smith, J. A., Rezniczek, G. A., Pan, S. et al., Unexpected gain of function for the scaffolding protein plectin due to mislocalization in pancreatic cancer. Proc. Natl. Acad. Sci. USA 2013, 110, 19414-19419.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 19414-19419
-
-
Shin, S.J.1
Smith, J.A.2
Rezniczek, G.A.3
Pan, S.4
-
114
-
-
84884171136
-
MicroRNA and protein profiling of brain metastasis competent cell-derived exosomes
-
Camacho, L., Guerrero, P., Marchetti, D., MicroRNA and protein profiling of brain metastasis competent cell-derived exosomes. PLoS One 2013, 8, e73790.
-
(2013)
PLoS One
, vol.8
, pp. e73790
-
-
Camacho, L.1
Guerrero, P.2
Marchetti, D.3
-
115
-
-
84885915953
-
Increased bisecting N-acetylglucosamine and decreased branched chain glycans of N-linked glycoproteins in expressed prostatic secretions associated with prostate cancer progression
-
Nyalwidhe, J. O., Betesh, L. R., Powers, T. W., Jones, E. E. et al., Increased bisecting N-acetylglucosamine and decreased branched chain glycans of N-linked glycoproteins in expressed prostatic secretions associated with prostate cancer progression. Proteomics Clin. Appl. 2013, 677-689. doi: 10.1002/prca.201200134
-
(2013)
Proteomics Clin. Appl
, pp. 677-689
-
-
Nyalwidhe, J.O.1
Betesh, L.R.2
Powers, T.W.3
Jones, E.E.4
-
116
-
-
84880630042
-
Identification and characterization of proteins isolated from microvesicles derived from human lung cancer pleural effusions
-
Park, J. O., Choi, D. Y., Choi, D. S., Kim, H. J. et al., Identification and characterization of proteins isolated from microvesicles derived from human lung cancer pleural effusions. Proteomics 2013, 13, 2125-2134.
-
(2013)
Proteomics
, vol.13
, pp. 2125-2134
-
-
Park, J.O.1
Choi, D.Y.2
Choi, D.S.3
Kim, H.J.4
-
117
-
-
84877756603
-
Differential protein profiling of renal cell carcinoma urinary exosomes
-
Raimondo, F., Morosi, L., Corbetta, S., Chinello, C. et al., Differential protein profiling of renal cell carcinoma urinary exosomes. Mol. Biosyst. 2013, 9, 1220-1233.
-
(2013)
Mol. Biosyst.
, vol.9
, pp. 1220-1233
-
-
Raimondo, F.1
Morosi, L.2
Corbetta, S.3
Chinello, C.4
-
118
-
-
84899534559
-
Proteomic analysis of saliva in HIV-positive heroin addicts reveals proteins correlated with cognition
-
Dominy, S. S., Brown, J. N., Ryder, M. I., Gritsenko, M. et al., Proteomic analysis of saliva in HIV-positive heroin addicts reveals proteins correlated with cognition. PLoS One 2014, 9, e89366.
-
(2014)
PLoS One
, vol.9
, pp. e89366
-
-
Dominy, S.S.1
Brown, J.N.2
Ryder, M.I.3
Gritsenko, M.4
-
119
-
-
84901259449
-
The use of nanotrap particles technology in capturing HIV-1 virions and viral proteins from infected cells
-
Jaworski, E., Saifuddin, M., Sampey, G., Shafagati, N. et al., The use of nanotrap particles technology in capturing HIV-1 virions and viral proteins from infected cells. PLoS One 2014, 9, e96778.
-
(2014)
PLoS One
, vol.9
, pp. e96778
-
-
Jaworski, E.1
Saifuddin, M.2
Sampey, G.3
Shafagati, N.4
-
120
-
-
84899674650
-
Absence of metalloprotease GP63 alters the protein content of leishmania exosomes
-
Hassani, K., Shio, M. T., Martel, C., Faubert, D. et al., Absence of metalloprotease GP63 alters the protein content of leishmania exosomes. PLoS One 2014, 9, e95007.
-
(2014)
PLoS One
, vol.9
, pp. e95007
-
-
Hassani, K.1
Shio, M.T.2
Martel, C.3
Faubert, D.4
-
121
-
-
84893823896
-
Exosomal proteins in the aqueous humor as novel biomarkers in patients with neovascular age-related macular degeneration
-
Kang, G. Y., Bang, J. Y., Choi, A. J., Yoon, J. et al., Exosomal proteins in the aqueous humor as novel biomarkers in patients with neovascular age-related macular degeneration. J. Proteome Res. 2014, 13, 581-595.
-
(2014)
J. Proteome Res.
, vol.13
, pp. 581-595
-
-
Kang, G.Y.1
Bang, J.Y.2
Choi, A.J.3
Yoon, J.4
-
122
-
-
84866426167
-
Exosomes: vehicles for the transfer of toxic proteins associated with neurodegenerative diseases
-
Bellingham, S. A., Guo, B. B., Coleman, B. M., Hill, A. F., Exosomes: vehicles for the transfer of toxic proteins associated with neurodegenerative diseases? Front Physiol. 2012, 3, 124.
-
(2012)
Front Physiol
, vol.3
, pp. 124
-
-
Bellingham, S.A.1
Guo, B.B.2
Coleman, B.M.3
Hill, A.F.4
-
123
-
-
84900036747
-
Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive dataset
-
Chiasserini, D., van Weering, J. R., Piersma, S. R., Pham, T. V. et al., Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive dataset. J. Proteomics 2014, 106C, 191-204.
-
(2014)
J. Proteomics
, vol.106 C
, pp. 191-204
-
-
Chiasserini, D.1
Weering van, J.R.2
Piersma, S.R.3
Pham, T.V.4
-
124
-
-
84899734394
-
Quantitative proteomic analysis of hepatocyte-secreted extracellular vesicles reveals candidate markers for liver toxicity
-
Rodriguez-Suarez, E., Gonzalez, E., Hughes, C., Conde-Vancells, J. et al., Quantitative proteomic analysis of hepatocyte-secreted extracellular vesicles reveals candidate markers for liver toxicity. J. Proteomics 2014, 103, 227-240.
-
(2014)
J. Proteomics
, vol.103
, pp. 227-240
-
-
Rodriguez-Suarez, E.1
Gonzalez, E.2
Hughes, C.3
Conde-Vancells, J.4
-
125
-
-
84894578152
-
Glioblastoma extracellular vesicles: reservoirs of potential biomarkers
-
Redzic, J. S., Ung, T. H., Graner, M. W., Glioblastoma extracellular vesicles: reservoirs of potential biomarkers. Pharmgenomics Pers. Med. 2014, 7, 65-77.
-
(2014)
Pharmgenomics Pers. Med
, vol.7
, pp. 65-77
-
-
Redzic, J.S.1
Ung, T.H.2
Graner, M.W.3
-
126
-
-
27844450020
-
Purification, characterization and biological significance of tumor-derived exosomes
-
Koga, K., Matsumoto, K., Akiyoshi, T., Kubo, M. et al., Purification, characterization and biological significance of tumor-derived exosomes. Anticancer Res. 2005, 25, 3703-3707.
-
(2005)
Anticancer Res
, vol.25
, pp. 3703-3707
-
-
Koga, K.1
Matsumoto, K.2
Akiyoshi, T.3
Kubo, M.4
-
127
-
-
38048999426
-
Proteomic analysis of microvesicles derived from human colorectal cancer cells
-
Choi, D. S., Lee, J. M., Park, G. W., Lim, H. W. et al., Proteomic analysis of microvesicles derived from human colorectal cancer cells. J. Proteome Res. 2007, 6, 4646-4655.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 4646-4655
-
-
Choi, D.S.1
Lee, J.M.2
Park, G.W.3
Lim, H.W.4
-
128
-
-
84878630476
-
Proteome profiling of exosomes derived from human primary and metastatic colorectal cancer cells reveal differential expression of key metastatic factors and signal transduction components
-
Ji, H., Greening, D. W., Barnes, T. W., Lim, J. W. et al., Proteome profiling of exosomes derived from human primary and metastatic colorectal cancer cells reveal differential expression of key metastatic factors and signal transduction components. Proteomics 2013, 13, 1672-1686.
-
(2013)
Proteomics
, vol.13
, pp. 1672-1686
-
-
Ji, H.1
Greening, D.W.2
Barnes, T.W.3
Lim, J.W.4
-
129
-
-
20244373139
-
Tumor-derived exosomes are a source of shared tumor rejection antigens for CTL cross-priming
-
Wolfers, J., Lozier, A., Raposo, G., Regnault, A. et al., Tumor-derived exosomes are a source of shared tumor rejection antigens for CTL cross-priming. Nat. Med. 2001, 7, 297-303.
-
(2001)
Nat. Med.
, vol.7
, pp. 297-303
-
-
Wolfers, J.1
Lozier, A.2
Raposo, G.3
Regnault, A.4
-
130
-
-
0036120616
-
Laser capture microdissection and two-dimensional polyacrylamide gel electrophoresis: evaluation of tissue preparation and sample limitations
-
Craven, R. A., Totty, N., Harnden, P., Selby, P. J. et al., Laser capture microdissection and two-dimensional polyacrylamide gel electrophoresis: evaluation of tissue preparation and sample limitations. Am. J. Pathol. 2002, 160, 815-822.
-
(2002)
Am. J. Pathol.
, vol.160
, pp. 815-822
-
-
Craven, R.A.1
Totty, N.2
Harnden, P.3
Selby, P.J.4
-
131
-
-
84865477117
-
Melanoma cell-derived exosomes alter macrophage and dendritic cell functions in vitro
-
Marton, A., Vizler, C., Kusz, E., Temesfoi, V. et al., Melanoma cell-derived exosomes alter macrophage and dendritic cell functions in vitro. Immunol. Lett. 2012, 148, 34-38.
-
(2012)
Immunol. Lett
, vol.148
, pp. 34-38
-
-
Marton, A.1
Vizler, C.2
Kusz, E.3
Temesfoi, V.4
-
132
-
-
11144353573
-
Proteomic analysis of exosomes secreted by human mesothelioma cells
-
Hegmans, J. P., Bard, M. P., Hemmes, A., Luider, T. M. et al., Proteomic analysis of exosomes secreted by human mesothelioma cells. Am. J. Pathol. 2004, 164, 1807-1815.
-
(2004)
Am. J. Pathol.
, vol.164
, pp. 1807-1815
-
-
Hegmans, J.P.1
Bard, M.P.2
Hemmes, A.3
Luider, T.M.4
-
133
-
-
70349316341
-
Proteomic and immunologic analyses of brain tumor exosomes
-
Graner, M. W., Alzate, O., Dechkovskaia, A. M., Keene, J. D. et al., Proteomic and immunologic analyses of brain tumor exosomes. FASEB J. 2009, 23, 1541-1557.
-
(2009)
FASEB J
, vol.23
, pp. 1541-1557
-
-
Graner, M.W.1
Alzate, O.2
Dechkovskaia, A.M.3
Keene, J.D.4
-
134
-
-
55749112807
-
Proteomic profiling of exosomes: current perspectives
-
Simpson, R. J., Jensen, S. S., Lim, J. W., Proteomic profiling of exosomes: current perspectives. Proteomics 2008, 8, 4083-4099.
-
(2008)
Proteomics
, vol.8
, pp. 4083-4099
-
-
Simpson, R.J.1
Jensen, S.S.2
Lim, J.W.3
-
135
-
-
66949145155
-
Exosomes: proteomic insights and diagnostic potential
-
Simpson, R. J., Lim, J. W., Moritz, R. L., Mathivanan, S., Exosomes: proteomic insights and diagnostic potential. Expert. Rev. Proteomics 2009, 6, 267-283.
-
(2009)
Expert. Rev. Proteomics
, vol.6
, pp. 267-283
-
-
Simpson, R.J.1
Lim, J.W.2
Moritz, R.L.3
Mathivanan, S.4
-
136
-
-
79960147502
-
Exosome isolation for proteomic analyses and RN A profiling
-
Taylor, D. D., Zacharias, W., Gercel-Taylor, C., Exosome isolation for proteomic analyses and RN A profiling. Methods Mol. Biol. 2011, 728, 235-246.
-
(2011)
Methods Mol. Biol.
, vol.728
, pp. 235-246
-
-
Taylor, D.D.1
Zacharias, W.2
Gercel-Taylor, C.3
-
137
-
-
85015684168
-
The impact of disparate isolation methods for extracellular vesicles on downstream RNA profiling
-
Van Deun, J., Mestdagh, P., Sormunen, R., Cocquyt, V. et al. The impact of disparate isolation methods for extracellular vesicles on downstream RNA profiling. J. Extracell Vesicles 2014, 3, doi: 10.3402/jev.v3.24858
-
(2014)
J. Extracell Vesicles
, vol.3
-
-
Deun Van, J.1
Mestdagh, P.2
Sormunen, R.3
Cocquyt, V.4
-
138
-
-
79960147502
-
Exosome isolation for proteomic analyses and RNA profiling
-
Taylor, D. D., Zacharias, W., Gercel-Taylor, C., Exosome isolation for proteomic analyses and RNA profiling. Methods Mol. Biol. 728, 235-246.
-
Methods Mol. Biol.
, vol.728
, pp. 235-246
-
-
Taylor, D.D.1
Zacharias, W.2
Gercel-Taylor, C.3
-
139
-
-
84884379486
-
Proteome profiling of neuroblastoma-derived exosomes reveal the expression of proteins potentially involved in tumor progression
-
Marimpietri, D., Petretto, A., Raffaghello, L., Pezzolo, A. et al., Proteome profiling of neuroblastoma-derived exosomes reveal the expression of proteins potentially involved in tumor progression. PLoS One 2013, 8, e75054.
-
(2013)
PLoS One
, vol.8
, pp. e75054
-
-
Marimpietri, D.1
Petretto, A.2
Raffaghello, L.3
Pezzolo, A.4
-
140
-
-
84877738076
-
Urinary exosomes and diabetic nephropathy: a proteomic approach
-
Raimondo, F., Corbetta, S., Morosi, L., Chinello, C. et al., Urinary exosomes and diabetic nephropathy: a proteomic approach. Mol. Biosyst. 2013, 9, 1139-1146.
-
(2013)
Mol. Biosyst.
, vol.9
, pp. 1139-1146
-
-
Raimondo, F.1
Corbetta, S.2
Morosi, L.3
Chinello, C.4
-
141
-
-
84893868499
-
Exosomes from myeloid-derived suppressor cells carry biologically active proteins
-
Burke, M., Choksawangkarn, W., Edwards, N., Ostrand-Rosenberg, S. et al., Exosomes from myeloid-derived suppressor cells carry biologically active proteins. J. Proteome Res. 2014, 13, 836-843.
-
(2014)
J. Proteome Res.
, vol.13
, pp. 836-843
-
-
Burke, M.1
Choksawangkarn, W.2
Edwards, N.3
Ostrand-Rosenberg, S.4
-
142
-
-
84855384454
-
Identification and proteomic profiling of exosomes in human cerebrospinal fluid
-
Street, J. M., Barran, P. E., Mackay, C. L., Weidt, S. et al. Identification and proteomic profiling of exosomes in human cerebrospinal fluid. J. Transl. Med. 2012, 10, 5.
-
(2012)
J. Transl. Med
, vol.10
, pp. 5
-
-
Street, J.M.1
Barran, P.E.2
Mackay, C.L.3
Weidt, S.4
-
143
-
-
43249109372
-
Isolation and characterization of exosomes from cell culture supernatants and biological fluids
-
Unit 3 22
-
Thery, C., Amigorena, S., Raposo, G., Clayton, A., Isolation and characterization of exosomes from cell culture supernatants and biological fluids. Curr. Protoc. Cell Biol. Chapter 2006, 3, Unit 3 22.
-
(2006)
Curr. Protoc. Cell Biol. Chapter
, vol.3
-
-
Thery, C.1
Amigorena, S.2
Raposo, G.3
Clayton, A.4
-
144
-
-
84879440040
-
SILAC-based quantitative proteomic analysis of gastric cancer secretome
-
Marimuthu, A., Subbannayya, Y., Sahasrabuddhe, N. A., Balakrishnan, L. et al., SILAC-based quantitative proteomic analysis of gastric cancer secretome. Proteomics Clin. Appl. 2013, 7, 355-366.
-
(2013)
Proteomics Clin. Appl
, vol.7
, pp. 355-366
-
-
Marimuthu, A.1
Subbannayya, Y.2
Sahasrabuddhe, N.A.3
Balakrishnan, L.4
-
145
-
-
77957373390
-
Temporal profiling of the secretome during adipogenesis in humans
-
Zhong, J., Krawczyk, S. A., Chaerkady, R., Huang, H. et al., Temporal profiling of the secretome during adipogenesis in humans. J. Proteome Res. 2010, 9, 5228-5238.
-
(2010)
J. Proteome Res
, vol.9
, pp. 5228-5238
-
-
Zhong, J.1
Krawczyk, S.A.2
Chaerkady, R.3
Huang, H.4
-
146
-
-
84860381828
-
A proteomics approach for the identification and cloning of monoclonal antibodies from serum
-
Cheung, W. C., Beausoleil, S. A., Zhang, X., Sato, S. et al., A proteomics approach for the identification and cloning of monoclonal antibodies from serum. Nat. Biotechnol. 2012, 30, 447-452.
-
(2012)
Nat. Biotechnol
, vol.30
, pp. 447-452
-
-
Cheung, W.C.1
Beausoleil, S.A.2
Zhang, X.3
Sato, S.4
-
147
-
-
84874223925
-
Molecular deconvolution of the monoclonal antibodies that comprise the polyclonal serum response
-
Wine, Y., Boutz, D. R., Lavinder, J. J., Miklos, A. E. et al., Molecular deconvolution of the monoclonal antibodies that comprise the polyclonal serum response. Proc. Natl. Acad. Sci. USA 2013, 110, 2993-2998.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 2993-2998
-
-
Wine, Y.1
Boutz, D.R.2
Lavinder, J.J.3
Miklos, A.E.4
-
148
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S., Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20, 3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
149
-
-
79958164837
-
A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
-
Albaum, S. P., Hahne, H., Otto, A., Haussmann, U. et al. A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study. Proteome Sci 2011, 9, 30.
-
(2011)
Proteome Sci
, vol.9
, pp. 30
-
-
Albaum, S.P.1
Hahne, H.2
Otto, A.3
Haussmann, U.4
-
150
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng, J. K., McCormack, A. L., Yates, J. R., An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.3
-
151
-
-
77950660595
-
TagRecon: high-throughput mutation identification through sequence tagging
-
Dasari, S., Chambers, M. C., Slebos, R. J., Zimmerman, L. J. et al. TagRecon: high-throughput mutation identification through sequence tagging. J. Proteome Res. 2010, 9, 1716-1726.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 1716-1726
-
-
Dasari, S.1
Chambers, M.C.2
Slebos, R.J.3
Zimmerman, L.J.4
-
152
-
-
28844502433
-
Datamining methodology for LC-MALDI-MS based peptide profiling
-
Zucht, H. D., Lamerz, J., Khamenia, V., Schiller, C. et al., Datamining methodology for LC-MALDI-MS based peptide profiling. Comb. Chem. High Throughput Screen 2005, 8, 717-723.
-
(2005)
Comb. Chem. High Throughput Screen
, vol.8
, pp. 717-723
-
-
Zucht, H.D.1
Lamerz, J.2
Khamenia, V.3
Schiller, C.4
-
153
-
-
20644442887
-
MSight: an image analysis software for liquid chromatography-mass spectrometry
-
Palagi, P. M., Walther, D., Quadroni, M., Catherinet, S. et al., MSight: an image analysis software for liquid chromatography-mass spectrometry. Proteomics 2005, 5, 2381-2384.
-
(2005)
Proteomics
, vol.5
, pp. 2381-2384
-
-
Palagi, P.M.1
Walther, D.2
Quadroni, M.3
Catherinet, S.4
-
154
-
-
10744233766
-
Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards
-
Wang, W., Zhou, H., Lin, H., Roy, S. et al., Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards. Anal. Chem. 2003, 75, 4818-4826.
-
(2003)
Anal. Chem.
, vol.75
, pp. 4818-4826
-
-
Wang, W.1
Zhou, H.2
Lin, H.3
Roy, S.4
-
155
-
-
84891760956
-
Data, information, knowledge and principle: back to metabolism in KEGG
-
Kanehisa, M., Goto, S., Sato, Y., Kawashima, M. et al. Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res. 2014, 42, D199-D205.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D199-D205
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Kawashima, M.4
-
156
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
Kanehisa, M., Goto, S., KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000, 28, 27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
157
-
-
0034069495
-
Gene ontology: tool for the unification of biology
-
Ashburner, M., Ball, C. A., Blake, J.A., Botstein, D. et al., Gene ontology: tool for the unification of biology. Gene Ontol. Consortium. Nat. Genet. 2000, 25, 25-29.
-
(2000)
Gene Ontol. Consortium. Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
-
158
-
-
38449101120
-
Integration of biological networks and gene expression data using Cytoscape
-
Cline, M. S., Smoot, M., Cerami, E., Kuchinsky, A. et al., Integration of biological networks and gene expression data using Cytoscape. Nat. Protoc. 2007, 2, 2366-2382.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
-
159
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da W., Sherman, B. T., Lempicki, R. A., Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4, 44-57.
-
(2009)
Nat. Protoc
, vol.4
, pp. 44-57
-
-
Huang da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
160
-
-
58549112996
-
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
-
Huang da W., Sherman, B. T., Lempicki, R. A., Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009, 37, 1-13.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1-13
-
-
Huang da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
161
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
-
Krogh, A., Larsson, B., von Heijne, G., Sonnhammer, E. L., Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 2001, 305, 567-580.
-
(2001)
J. Mol. Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Heijne von, G.3
Sonnhammer, E.L.4
-
162
-
-
2142657817
-
A combined transmembrane topology and signal peptide prediction method
-
Kall, L., Krogh, A., Sonnhammer, E. L., A combined transmembrane topology and signal peptide prediction method. J. Mol. Biol. 2004, 338, 1027-1036.
-
(2004)
J. Mol. Biol
, vol.338
, pp. 1027-1036
-
-
Kall, L.1
Krogh, A.2
Sonnhammer, E.L.3
-
163
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
Emanuelsson, O., Nielsen, H., Brunak, S., von Heijne, G., Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J. Mol. Biol. 2000, 300, 1005-1016.
-
(2000)
J. Mol. Biol
, vol.300
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
Heijne von, G.4
-
164
-
-
3042692704
-
Feature-based prediction of non-classical and leaderless protein secretion
-
Bendtsen, J. D., Jensen, L. J., Blom, N., Von Heijne, G. et al., Feature-based prediction of non-classical and leaderless protein secretion. Protein Eng. Des. Sel. 2004, 17, 349-356.
-
(2004)
Protein Eng. Des. Sel
, vol.17
, pp. 349-356
-
-
Bendtsen, J.D.1
Jensen, L.J.2
Blom, N.3
Heijne Von, G.4
-
165
-
-
0027105007
-
A knowledge base for predicting protein localization sites in eukaryotic cells
-
Nakai, K., Kanehisa, M., A knowledge base for predicting protein localization sites in eukaryotic cells. Genomics 1992, 14, 897-911.
-
(1992)
Genomics
, vol.14
, pp. 897-911
-
-
Nakai, K.1
Kanehisa, M.2
-
166
-
-
34547560275
-
WoLF PSORT: protein localization predictor
-
Horton, P., Park, K. J., Obayashi, T., Fujita, N. et al., WoLF PSORT: protein localization predictor. Nucleic Acids Res. 2007, 35, W585-W587.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W585-W587
-
-
Horton, P.1
Park, K.J.2
Obayashi, T.3
Fujita, N.4
-
167
-
-
13444269483
-
SPD-a web-based secreted protein database
-
Chen, Y., Zhang, Y., Yin, Y., Gao, G. et al., SPD-a web-based secreted protein database. Nucleic Acids Res. 2005, 33, D169-D173.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. D169-D173
-
-
Chen, Y.1
Zhang, Y.2
Yin, Y.3
Gao, G.4
-
168
-
-
84867045160
-
Current challenges in software solutions for mass spectrometry-based quantitative proteomics
-
Cappadona, S., Baker, P. R., Cutillas, P. R., Heck, A. J. et al., Current challenges in software solutions for mass spectrometry-based quantitative proteomics. Amino Acids 2005, 43, 1087-1108.
-
(2005)
Amino Acids
, vol.43
, pp. 1087-1108
-
-
Cappadona, S.1
Baker, P.R.2
Cutillas, P.R.3
Heck, A.J.4
-
169
-
-
5344244656
-
R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria
-
R Core Team. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. 2013. http://www.R-project.org/
-
(2013)
-
-
|