A new method for quantitative analysis of cell surface glycoproteome

Proteomics

Volumn 12, Issue 22, 2012, Pages 3328-3337

  Sun, Zhen ^a   Chen, Rui ^a   Cheng, Kai ^a   Liu, Hongwei ^a   Qin, Hongqiang ^a   Ye, Mingliang ^a   Zou, Hanfa ^a  

^a DALIAN INSTITUTE OF CHEMICAL PHYSICS   (China)

Author keywords

CD annotated protein; Cell surface glycoprotein; Glycopeptides; Glycoproteomics; Non glycopeptides; Quantification

Indexed keywords

BASAL CELL ADHESION MOLECULE; CD147 ANTIGEN; CELL ADHESION MOLECULE; CELL MEMBRANE PROTEIN; CELL SURFACE PROTEIN; PROTEOME; UNCLASSIFIED DRUG;

ARTICLE; CELL LINE; CELL STRAIN HEPG2; CONTROLLED STUDY; DRUG TARGETING; HUMAN; HUMAN CELL; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN GLYCOSYLATION; QUANTITATIVE ANALYSIS; WESTERN BLOTTING;

ANTIGENS, CD147; BLOTTING, WESTERN; CELL ADHESION MOLECULES; CELL MEMBRANE; GLYCOPEPTIDES; HEP G2 CELLS; HUMANS; LUTHERAN BLOOD-GROUP SYSTEM; MEMBRANE GLYCOPROTEINS; PROTEOME; PROTEOMICS;

EID: 84870241467     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201200150     Document Type: Article

References (38)

1. Ott, C. M., Lingappa, V. R., Integral membrane protein biosynthesis: why topology is hard to predict. J. Cell Sci. 2002, 115, 2003-2009.
2. Roth, J., Protein N-glycosylation along the secretory pathway: relationship to organelle topography and function, protein quality control, and cell interactions. Chem. Rev. 2002, 102, 285-303.
3. Glinsky, G. V., Antigen presentation, aberrant glycosylation and tumor progression. Crit. Rev. Oncol. Hematol. 1994, 17, 27-51.
4. Hopkins, A. L., Groom, C. R., The druggable genome. Nat. Rev. Drug Discov. 2002, 1, 727-730.
5. Graham, R. L. J., Pollock, C. E., O'Loughlin, S. N., Ternan, N. G. et al., Multidimensional analysis of the insoluble sub-proteome of Oceanobacillus iheyensis HTE831, an alkaliphilic and halotolerant deep-sea bacterium isolated from the Iheya ridge. Proteomics 2007, 7, 82-91.
6. Klein, C., Garcia-Rizo, C., Bisle, B., Scheffer, B. et al., The membrane proteome of Halobacterium salinarum. Proteomics 2005, 5, 180-197.
7. Pedersen, S. K., Harry, J. L., Sebastian, L., Baker, J. et al., Unseen proteome: mining below the tip of the iceberg to find low abundance and membrane proteins. J. Proteome Res. 2003, 2, 303-311.
8. Schluesener, D., Fischer, F., Kruip, J., Rogner, M., Poetsch, A., Mapping the membrane proteome of Corynebacterium glutamicum. Proteomics 2005, 5, 1317-1330.
9. Zhang, H., Li, X. J., Martin, D. B., Aebersold, R., Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat. Biotechnol. 2003, 21, 660-666.
10. Lis, H., Sharon, N., Lectins: carbohydrate-specific proteins that mediate cellular recognition. Chem. Rev. 1998, 98, 637-674.
11. Springsteen, G., Wang, B., A detailed examination of boronic acid-diol complexation. Tetrahedron 2002, 58, 5291-5300.
12. Larsen, M. R., Jensen, S. S., Jakobsen, L. A., Heegaard, N. H. H., Exploring the sialiome using titanium dioxide chromatography and mass spectrometry. Mol. Cell. Proteomics 2007, 6, 1778-1787.
13. Alpert, A. J., Electrostatic repulsion hydrophilic interaction chromatography for isocratic separation of charged solutes and selective isolation of phosphopeptides. Anal. Chem. 2008, 80, 62-76.
14. Roffman, E., Mermosky, L., Benhur, H., Bayer, E. A., Wilchek, M., Selective labeling of functional-groups on membrane-proteins or glycoproteins using reactive biotin derivatives and I-125 streptavidin. Biochem. Biophys. Res. Commun. 1986, 136, 80-85.
15. Wollscheid, B., Bausch-Fluck, D., Henderson, C., O'Brien, R. et al., Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins. Nat. Biotechnol. 2009, 27, 378-386.
16. Gundry, R. L., Raginski, K., Tarasova, Y., Tchernyshyov, I. et al., The mouse C2C12 myoblast cell surface N-linked glycoproteome. Mol. Cell. Proteomics 2009, 8, 2555-2569.
17. Schiess, R., Mueller, L. N., Schmidt, A., Mueller, M. et al., Analysis of cell surface proteome changes via label-free, quantitative mass spectrometry. Mol. Cell. Proteomics 2008, 8, 624-638.
18. Boersema, P. J., Raijmakers, R., Lemeer, S., Mohammed, S., Heck, A. J. R., Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nat. Protoc. 2009, 4, 484-494.
19. Wang, F., Chen, R., Zhu, J., Sun, D. et al., A fully automated system with online sample loading, isotope dimethyl labeling and multidimensional separation for high-throughput quantitative proteome analysis. Anal. Chem. 2010, 82, 3007-3015.
20. He, P., He, H. Z., Dai, J., Wang, Y. et al., The human plasma proteome: analysis of Chinese serum using shotgun strategy. Proteomics 2005, 5, 3442-3453.
21. Krogh, A., Larsson, B., von Heijne, G., Sonnhammer, E. L. L., Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 2001, 305, 567-580.
22. Zeeberg, B. R., Feng, W. M., Wang, G., Wang, M. D. et al., GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol. 2003, 4, R28.
23. Link, A. J., Eng, J., Schieltz, D. M., Carmack, E. et al., Direct analysis of protein complexes using mass spectrometry. Nat. Biotechnol. 1999, 17, 676-682.
24. Sun, B. Y., Ranish, J. A., Utleg, A. G., White, J. T. et al., Shotgun glycopeptide capture approach coupled with mass spectrometry for comprehensive glycoproteomics. Mol. Cell. Proteomics 2007, 6, 141-149.
25. Geoghegan, K. F., Stroh, J. G., Site-directed conjugation of nonpeptide groups to peptides and proteins via periodate oxidation of a 2-amino alcohol. Application to modification at N-terminal serine. Bioconjugate Chem. 1992, 3, 138-146.
26. McDonald, C. A., Yang, J. Y., Marathe, V., Yen, T. Y., Macher, B. A., Combining results from lectin affinity chromatography and glycocapture approaches substantially improves the coverage of the glycoproteome. Mol. Cell. Proteomics 2009, 8, 287-301.
27. Tang, W., Chang, S. B., Hemler, M. E., Links between CD147 function, glycosylation, and caveolin-1. Mol. Biol. Cell 2004, 15, 4043-4050.
28. Fadool, J. M., Linser, P. J., Evidence for the formation of multimeric forms of the 5A11/HT7 antigen. Biochem. Biophys. Res. Commun. 1996, 229, 280-286.
29. Yoshida, S., Shibata, M., Yamamoto, S., Hagihara, M. et al., Homo-oligomer formation by basigin, an immunoglobulin superfamily member, via its N-terminal immunoglobulin domain. Eur. J. Biochem. 2000, 267, 4372-4380.
30. Jones, J., Krag, S. S., Betenbaugh, M. J., Controlling N-linked glycan site occupancy. Biochimica Et Biophysica Acta-General Subjects 2005, 1726, 121-137.
31. Gawlitzek, M., Estacio, M., Furch, T., Kiss, R., Identification of cell culture conditions to control N-glycosylation site-occupancy of recombinant glycoproteins expressed in CHO cells. Biotechnol. Bioeng. 2009, 103, 1164-1175.
32. Devasahayam, M., Catalino, P. D., Rudd, P. M., Dwek, R. A., Barclay, A. N., The glycan processing and site occupancy of recombinant Thy-1 is markedly affected by the presence of a glycosylphosphatidylinositol anchor. Glycobiology 1999, 9, 1381-1387.
33. Chen, R., Tan, Y. X., Wang, M., Wang, F. J. et al., Development of glycoprotein capture based label-free method for the high-throughput screening of differential glycoproteins in Hepatocellular carcinoma. Mol. Cell. Proteomics 2011, 10, M110.006445.
34. Ellis, S. M., Nabeshima, K., Biswas, C., Monoclonal-antibody preparation and purification of a tumor-cell collagenase-stimulatory factor. Cancer Res. 1989, 49, 3385-3391.
35. Kataoka, H., Decastro, R., Zucker, S., Biswas, C., Tumor cell-derived collagenase-stimulatory factor increases expression of interstitial collagenase, stromelysin, and 72-Kda gelatinase. Cancer Res. 1993, 53, 3154-3158.
36. Jiang, J. L., Zhou, Q., Yu, M. K., Ho, L. S. et al., The involvement of HAb18G/CD147 in regulation of store-operated calcium entry and metastasis of human hepatoma cells. J. Biol. Chem. 2001, 276, 46870-46877.
37. Yu, K. H., Barry, C. G., Austin, D., Busch, C. M. et al., Stable isotope dilution multidimensional liquid chromatography-tandem mass spectrometry for pancreatic cancer serum biomarker discovery. J. Proteome Res. 2009, 8, 1565-1576.
38. Liu, T., Qian, W.-J., Gritsenko, M. A., Camp, D. G. et al., Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. J. Proteome Res. 2005, 4, 2070-2080.