-
1
-
-
0034659815
-
Proteomics to study genes and genomes
-
Pandey,A. and Mann,M. (2000) Proteomics to study genes and genomes. Nature, 405, 837-846.
-
(2000)
Nature
, vol.405
, pp. 837-846
-
-
Pandey, A.1
Mann, M.2
-
2
-
-
0037435022
-
Protein analysis on a proteomic scale
-
Phizicky,E., Bastiaens,P.I., Zhu,H., Snyder,M. and Fields,S. (2003) Protein analysis on a proteomic scale. Nature, 422, 208-215.
-
(2003)
Nature
, vol.422
, pp. 208-215
-
-
Phizicky, E.1
Bastiaens, P.I.2
Zhu, H.3
Snyder, M.4
Fields, S.5
-
3
-
-
0035165576
-
WormBase: Network access to the genome and biology of Caenorhabditis elegans
-
Stein,L., Sternberg,P., Durbin,R., Thierry-Mieg,J. and Spieth,J. (2001) WormBase: Network access to the genome and biology of Caenorhabditis elegans. Nucleic Acids Res., 29, 82-86.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 82-86
-
-
Stein, L.1
Sternberg, P.2
Durbin, R.3
Thierry-Mieg, J.4
Spieth, J.5
-
5
-
-
13444251422
-
-
Hubbard,T., Andrews,D., Caccamo,M., Cameron,G., Chen,Y., Clamp,M., Clarke,L., Coates,G., Cox,T., Cunningham,F. et al. (2005) Ensembl 2005. Nucleic Acids Res., 33, D447-D453.
-
Hubbard,T., Andrews,D., Caccamo,M., Cameron,G., Chen,Y., Clamp,M., Clarke,L., Coates,G., Cox,T., Cunningham,F. et al. (2005) Ensembl 2005. Nucleic Acids Res., 33, D447-D453.
-
-
-
-
6
-
-
2942547885
-
The distributed annotation system
-
Dowell,R.D., Jokerst,R.M., Day,A., Eddy,S.R. and Stein,L. (2001) The distributed annotation system. BMC Bioinformatics, 2, 7.
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 7
-
-
Dowell, R.D.1
Jokerst, R.M.2
Day, A.3
Eddy, S.R.4
Stein, L.5
-
7
-
-
27544516284
-
Adding some SPICE to DAS
-
Prlic,A., Down,T.A. and Hubbard,T.J. (2005) Adding some SPICE to DAS. Bioinformatics, 21 (Suppl 2), ii40-ii41.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Prlic, A.1
Down, T.A.2
Hubbard, T.J.3
-
8
-
-
25144483462
-
Dasty and UniProt DAS: A perfect pair for protein feature visualization
-
Jones,P., Vinod,N., Down,T., Hackmann,A., Kahari,A., Kretschmann,E., Quinn,A., Wieser,D., Hermjakob,H. and Apweiler,R. (2005) Dasty and UniProt DAS: A perfect pair for protein feature visualization. Bioinformatics, 21, 3198-3199.
-
(2005)
Bioinformatics
, vol.21
, pp. 3198-3199
-
-
Jones, P.1
Vinod, N.2
Down, T.3
Hackmann, A.4
Kahari, A.5
Kretschmann, E.6
Quinn, A.7
Wieser, D.8
Hermjakob, H.9
Apweiler, R.10
-
9
-
-
13444273448
-
The Universal Protein Resource (UniProt)
-
Bairoch,A., Apweiler,R., Wu,C.H., Barker,W.C., Boeckmann,B., Ferro,S., Gasteiger,E., Huang,H., Lopez,R., Magrane,M. et al. (2005) The Universal Protein Resource (UniProt). Nucleic Acids Res., 33 D154-D159.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
-
10
-
-
33644877439
-
Human protein reference database - 2006 update
-
Mishra,G.R., Suresh,M., Kumaran,K., Kannabiran,N., Suresh,S., Bala,P., Shivakumar,K., Anuradha,N., Reddy,R., Raghavan,T.M. et al. (2006) Human protein reference database - 2006 update. Nucleic Acids Res., 34, D411-D414.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Mishra, G.R.1
Suresh, M.2
Kumaran, K.3
Kannabiran, N.4
Suresh, S.5
Bala, P.6
Shivakumar, K.7
Anuradha, N.8
Reddy, R.9
Raghavan, T.M.10
-
11
-
-
9144236198
-
Human protein reference database as a discovery resource for proteomics
-
Peri,S., Navarro,J.D., Kristiansen,T.Z., Amanchy,R., Surendranath,V., Muthusamy,B., Gandhi,T.K., Chandrika,K.N., Deshpande,N., Suresh,S. et al. (2004) Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res., 32, D497-D501.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Peri, S.1
Navarro, J.D.2
Kristiansen, T.Z.3
Amanchy, R.4
Surendranath, V.5
Muthusamy, B.6
Gandhi, T.K.7
Chandrika, K.N.8
Deshpande, N.9
Suresh, S.10
-
12
-
-
20144381803
-
Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry
-
Desiere,F., Deutsch,E.W., Nesvizhskii,A.I., Mallick,P., King,N.L., Eng,J.K., Aderem,A., Boyle,R., Brunner,E., Donohoe,S. et al. (2005) Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry. Genome Biol., 6, R9.
-
(2005)
Genome Biol
, vol.6
-
-
Desiere, F.1
Deutsch, E.W.2
Nesvizhskii, A.I.3
Mallick, P.4
King, N.L.5
Eng, J.K.6
Aderem, A.7
Boyle, R.8
Brunner, E.9
Donohoe, S.10
-
13
-
-
33747170146
-
Using annotated peptide mass spectrum libraries for protein identification
-
Craig,R., Cortens,J.C., Fenyo,D. and Beavis,R.C. (2006) Using annotated peptide mass spectrum libraries for protein identification. J. Proteome Res., 5, 1843-1849.
-
(2006)
J. Proteome Res
, vol.5
, pp. 1843-1849
-
-
Craig, R.1
Cortens, J.C.2
Fenyo, D.3
Beavis, R.C.4
-
14
-
-
1842424944
-
The need for a public proteomics repository
-
Prince,J.T., Carlson,M.W., Wang,R., Lu,P. and Marcotte,E.M. (2004) The need for a public proteomics repository. Nat. Biotechnol., 22 471-472.
-
(2004)
Nat. Biotechnol
, vol.22
, pp. 471-472
-
-
Prince, J.T.1
Carlson, M.W.2
Wang, R.3
Lu, P.4
Marcotte, E.M.5
-
15
-
-
23944526367
-
-
Martens,L., Hermjakob,H., Jones,P., Adamski,M., Taylor,C., States,D., Gevaert,K., Vandekerckhove,J. and Apweiler,R. (2005) PRIDE: The proteomics identifications database. Proteomics, 5, 3537-3545.
-
Martens,L., Hermjakob,H., Jones,P., Adamski,M., Taylor,C., States,D., Gevaert,K., Vandekerckhove,J. and Apweiler,R. (2005) PRIDE: The proteomics identifications database. Proteomics, 5, 3537-3545.
-
-
-
-
16
-
-
33644875983
-
PRIDE: A public repository of protein and peptide identifications for the proteomics community
-
Jones,P., Cote,R.G., Martens,L., Quinn,A.F., Taylor,C.F., Derache,W., Hermjakob,H. and Apweiler,R. (2006) PRIDE: A public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Res., 34, D659-D663.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Jones, P.1
Cote, R.G.2
Martens, L.3
Quinn, A.F.4
Taylor, C.F.5
Derache, W.6
Hermjakob, H.7
Apweiler, R.8
-
17
-
-
33846691375
-
ProteomeCommons.org IO Framework: Reading and writing multiple proteomics data formats
-
Falkner,J.A., Falkner,J.W. and Andrews,P.C. (2007) ProteomeCommons.org IO Framework: Reading and writing multiple proteomics data formats. Bioinformatics, 23, 262-263.
-
(2007)
Bioinformatics
, vol.23
, pp. 262-263
-
-
Falkner, J.A.1
Falkner, J.W.2
Andrews, P.C.3
-
18
-
-
0037228220
-
Vimentin is secreted by activated macrophages
-
Mor-Vaknin,N., Punturieri,A., Sitwala,K. and Markovitz,D.M. (2003) Vimentin is secreted by activated macrophages. Nat. Cell Biol., 5, 59-63.
-
(2003)
Nat. Cell Biol
, vol.5
, pp. 59-63
-
-
Mor-Vaknin, N.1
Punturieri, A.2
Sitwala, K.3
Markovitz, D.M.4
-
19
-
-
29244477844
-
A human protein atlas for normal and cancer tissues based on antibody proteomics
-
Uhlen,M., Bjorling,E., Agaton,C., Szigyarto,C.A., Amini,B., Andersen,E., Andersson,A.C., Angelidou,P., Asplund,A., Asplund,C. et al. (2005) A human protein atlas for normal and cancer tissues based on antibody proteomics. Mol. Cell Proteomics, 4, 1920-1932.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 1920-1932
-
-
Uhlen, M.1
Bjorling, E.2
Agaton, C.3
Szigyarto, C.A.4
Amini, B.5
Andersen, E.6
Andersson, A.C.7
Angelidou, P.8
Asplund, A.9
Asplund, C.10
-
20
-
-
0038817774
-
eVOC: A controlled vocabulary for unifying gene expression data
-
Kelso,J., Visagie,J., Theiler,G., Christoffels,A., Bardien,S., Smedley,D., Otgaar,D., Greyling,G., Jongeneel,C.V., McCarthy,M.I. et al. (2003) eVOC: A controlled vocabulary for unifying gene expression data. Genome Res., 13, 1222-1230.
-
(2003)
Genome Res
, vol.13
, pp. 1222-1230
-
-
Kelso, J.1
Visagie, J.2
Theiler, G.3
Christoffels, A.4
Bardien, S.5
Smedley, D.6
Otgaar, D.7
Greyling, G.8
Jongeneel, C.V.9
McCarthy, M.I.10
-
21
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner,M., Ball,C.A., Blake,J.A., Botstein,D., Butler,H., Cherry,J.M., Davis,A.P., Dolinski,K., Dwight,S.S., Eppig,J.T. et al. (2000) Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
-
(2000)
Nat. Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
22
-
-
0037250368
-
The RESID Database of Protein Modifications: 2003 developments
-
Garavelli,J.S. (2003) The RESID Database of Protein Modifications: 2003 developments. Nucleic Acids Res., 31, 499-501.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 499-501
-
-
Garavelli, J.S.1
-
23
-
-
0742323374
-
The HUPO PSI's molecular interaction format-a community standard for the representation of protein interaction data
-
Hermjakob,H., Montecchi-Palazzi,L., Bader,G., Wojcik,J., Salwinski,L., Ceol,A., Moore,S., Orchard,S., Sarkans,U., von Mering,C. et al. (2004) The HUPO PSI's molecular interaction format-a community standard for the representation of protein interaction data. Nat. Biotechnol. 22, 177-183.
-
(2004)
Nat. Biotechnol
, vol.22
, pp. 177-183
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Bader, G.3
Wojcik, J.4
Salwinski, L.5
Ceol, A.6
Moore, S.7
Orchard, S.8
Sarkans, U.9
von Mering, C.10
|