메뉴 건너뛰기




Volumn 14, Issue 1, 2015, Pages 61-73

Evolving insights on how cytosine methylation affects protein-DNA binding

Author keywords

5 methylcytosine; DNA methylation; DNase i endonuclease; Epigenetics; Protein DNA interactions; Transcription factors

Indexed keywords

5 METHYLCYTOSINE; CYTOSINE; DEOXYRIBONUCLEASE I; DNA; DNA BASE; DNA BINDING PROTEIN; ENDONUCLEASE; METHYL GROUP; PROTEIN; TRANSCRIPTION FACTOR; NUCLEOSOME; PROTEIN BINDING;

EID: 84922424278     PISSN: 20412649     EISSN: 20412657     Source Type: Journal    
DOI: 10.1093/bfgp/elu040     Document Type: Article
Times cited : (93)

References (112)
  • 1
    • 0026708177 scopus 로고
    • Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
    • Li E, Bestor TH, Jaenisch R. Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell 1992;69: 915-26.
    • (1992) Cell , vol.69 , pp. 915-926
    • Li, E.1    Bestor, T.H.2    Jaenisch, R.3
  • 2
    • 79956306617 scopus 로고    scopus 로고
    • Regulation of X-chromosome inactivation by the X-inactivation centre
    • Augui S, Nora EP, Heard E. Regulation of X-chromosome inactivation by the X-inactivation centre. Nat Rev Genet 2011;12: 429-42.
    • (2011) Nat Rev Genet , vol.12 , pp. 429-442
    • Augui, S.1    Nora, E.P.2    Heard, E.3
  • 4
    • 84902197893 scopus 로고    scopus 로고
    • Reprogramming the methylome: erasing memory and creating diversity
    • Lee HJ, Hore TA, Reik W. Reprogramming the methylome: erasing memory and creating diversity. Cell Stem Cell 2014;14: 710-9.
    • (2014) Cell Stem Cell , vol.14 , pp. 710-719
    • Lee, H.J.1    Hore, T.A.2    Reik, W.3
  • 5
    • 0031662164 scopus 로고    scopus 로고
    • Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
    • Walsh CP, Chaillet JR, Bestor TH. Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. Nature 1998;20: 116-7.
    • (1998) Nature , vol.20 , pp. 116-117
    • Walsh, C.P.1    Chaillet, J.R.2    Bestor, T.H.3
  • 6
    • 77953429462 scopus 로고    scopus 로고
    • Brain function and chromatin plasticity
    • Dulac C. Brain function and chromatin plasticity. Nature 2010;465: 728-35.
    • (2010) Nature , vol.465 , pp. 728-735
    • Dulac, C.1
  • 7
    • 84864125260 scopus 로고    scopus 로고
    • The aging epigenome: DNA methylation from the cradle to the grave
    • Winnefeld M, Lyko F. The aging epigenome: DNA methylation from the cradle to the grave. Genome Biol 2012;13: 165.
    • (2012) Genome Biol , vol.13 , pp. 165
    • Winnefeld, M.1    Lyko, F.2
  • 8
    • 84866406017 scopus 로고    scopus 로고
    • DNA methylation: a promising landscape for immune system-related diseases
    • Suarez-Alvarez B, Rodriguez RM, Fraga MF, et al. DNA methylation: a promising landscape for immune system-related diseases. Trends Genet 2012;28: 506-14.
    • (2012) Trends Genet , vol.28 , pp. 506-514
    • Suarez-alvarez, B.1    Rodriguez, R.M.2    Fraga, M.F.3
  • 9
    • 0037007175 scopus 로고    scopus 로고
    • Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases
    • Jeltsch A. Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases. Chembiochem 2002;3: 274-93.
    • (2002) Chembiochem , vol.3 , pp. 274-293
    • Jeltsch, A.1
  • 10
    • 66149146320 scopus 로고    scopus 로고
    • Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
    • Tahiliani M, Koh KP, Shen Y, et al. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 2009;324: 930-5.
    • (2009) Science , vol.324 , pp. 930-935
    • Tahiliani, M.1    Koh, K.P.2    Shen, Y.3
  • 11
    • 83855163995 scopus 로고    scopus 로고
    • Uncovering the role of 5-hydroxymethylcytosine in the epigenome
    • Branco MR, Ficz G, Reik W. Uncovering the role of 5-hydroxymethylcytosine in the epigenome. Nat Rev Genet 2012;13: 7-13.
    • (2012) Nat Rev Genet , vol.13 , pp. 7-13
    • Branco, M.R.1    Ficz, G.2    Reik, W.3
  • 12
    • 78651280460 scopus 로고    scopus 로고
    • Selective chemical labeling reveals the genome-wide distribution of 5-hydro-xymethylcytosine
    • Song CX, Szulwach KE, Fu Y, et al. Selective chemical labeling reveals the genome-wide distribution of 5-hydro-xymethylcytosine. Nat Biotechnol 2010;29: 68-72.
    • (2010) Nat Biotechnol , vol.29 , pp. 68-72
    • Song, C.X.1    Szulwach, K.E.2    Fu, Y.3
  • 13
    • 84455167621 scopus 로고    scopus 로고
    • Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells
    • Yildirim O, Li R, Hung JH, et al. Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells. Cell 2011;147: 1498-510.
    • (2011) Cell , vol.147 , pp. 1498-1510
    • Yildirim, O.1    Li, R.2    Hung, J.H.3
  • 14
    • 82255192294 scopus 로고    scopus 로고
    • 5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging
    • Szulwach KE, Li X, Li Y, et al. 5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging. Nat Neurosci 2011;14: 1607-16.
    • (2011) Nat Neurosci , vol.14 , pp. 1607-1616
    • Szulwach, K.E.1    Li, X.2    Li, Y.3
  • 15
    • 0033615717 scopus 로고    scopus 로고
    • DNA methyltrans-ferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
    • Okano M, Bell DW, Haber DA, et al. DNA methyltrans-ferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 1999;99: 247-57.
    • (1999) Cell , vol.99 , pp. 247-257
    • Okano, M.1    Bell, D.W.2    Haber, D.A.3
  • 16
    • 0037168587 scopus 로고    scopus 로고
    • The DNA methyltransferase-like protein DNMT3L stimulates de novo methylation by Dnmt3a
    • Chedin F, Lieber MR, Hsieh CL. The DNA methyltransferase-like protein DNMT3L stimulates de novo methylation by Dnmt3a. Proc Natl Acad Sci USA 2002;99: 16916-21.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 16916-16921
    • Chedin, F.1    Lieber, M.R.2    Hsieh, C.L.3
  • 17
    • 0034625064 scopus 로고    scopus 로고
    • Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a
    • Ramsahoye BH, Biniszkiewicz D, Lyko F, et al. Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a. Proc Natl Acad Sci USA 2000;97: 5237-42.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 5237-5242
    • Ramsahoye, B.H.1    Biniszkiewicz, D.2    Lyko, F.3
  • 18
    • 84879663784 scopus 로고    scopus 로고
    • Global epigenomic reconfiguration during mammalian brain development
    • Lister R, Mukamel EA, Nery JR, et al. Global epigenomic reconfiguration during mammalian brain development. Science 2013;341: 1237905.
    • (2013) Science , vol.341 , pp. 1237905
    • Lister, R.1    Mukamel, E.A.2    Nery, J.R.3
  • 19
    • 84893740377 scopus 로고    scopus 로고
    • Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain
    • Guo JU, Su Y, Shin JH, et al. Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain. Nat Neurosci 2014;17: 215-22.
    • (2014) Nat Neurosci , vol.17 , pp. 215-222
    • Guo, J.U.1    Su, Y.2    Shin, J.H.3
  • 20
    • 33748629119 scopus 로고    scopus 로고
    • Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis
    • Zhang X, Yazaki J, Sundaresan A, et al. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell 2006;126: 1189-201.
    • (2006) Cell , vol.126 , pp. 1189-1201
    • Zhang, X.1    Yazaki, J.2    Sundaresan, A.3
  • 21
    • 33845880624 scopus 로고    scopus 로고
    • Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
    • Zilberman D, Gehring M, Tran RK, et al. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet 2006;39: 61-9.
    • (2006) Nat Genet , vol.39 , pp. 61-69
    • Zilberman, D.1    Gehring, M.2    Tran, R.K.3
  • 22
    • 0028031830 scopus 로고
    • RNA-directed de novo methylation of genomic sequences in plants
    • Wassenegger M, Heimes S, Riedel L. RNA-directed de novo methylation of genomic sequences in plants. Cell 1994;76: 567-76.
    • (1994) Cell , vol.76 , pp. 567-576
    • Wassenegger, M.1    Heimes, S.2    Riedel, L.3
  • 23
    • 34249330696 scopus 로고    scopus 로고
    • Epigenetic inheritance in plants
    • Henderson IR, Jacobsen SE. Epigenetic inheritance in plants. Nature 2007;447: 418-24.
    • (2007) Nature , vol.447 , pp. 418-424
    • Henderson, I.R.1    Jacobsen, S.E.2
  • 24
    • 84899870930 scopus 로고    scopus 로고
    • Genome methylation in D. melanogaster is found at specific short motifs and is independent of DNMT2 activity
    • Takayama S, Dhahbi J, Roberts A, et al. Genome methylation in D. melanogaster is found at specific short motifs and is independent of DNMT2 activity. Genome Res 2014;24: 821-30.
    • (2014) Genome Res , vol.24 , pp. 821-830
    • Takayama, S.1    Dhahbi, J.2    Roberts, A.3
  • 25
    • 0242416979 scopus 로고    scopus 로고
    • The methylated component of the Neurospora crassa genome
    • Selker EU, Tountas NA, Cross SH, et al. The methylated component of the Neurospora crassa genome. Nature 2003;422: 893-7.
    • (2003) Nature , vol.422 , pp. 893-897
    • Selker, E.U.1    Tountas, N.A.2    Cross, S.H.3
  • 26
    • 55949137722 scopus 로고    scopus 로고
    • Persistent epigenetic differences associated with prenatal exposure to famine in humans
    • Heijmans BT, Tobi EW, Stein AD, et al. Persistent epigenetic differences associated with prenatal exposure to famine in humans. Proc Natl Acad Sci USA 2008;105: 17046-9.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 17046-17049
    • Heijmans, B.T.1    Tobi, E.W.2    Stein, A.D.3
  • 27
    • 84897139220 scopus 로고    scopus 로고
    • Transgenerational epigenetic inheritance: myths and mechanisms
    • Heard E, Martienssen RA. Transgenerational epigenetic inheritance: myths and mechanisms. Cell 2014;157: 95-109.
    • (2014) Cell , vol.157 , pp. 95-109
    • Heard, E.1    Martienssen, R.A.2
  • 28
    • 84899796235 scopus 로고    scopus 로고
    • Maternal nutrition at conception modulates DNA methylation of human metastable epialleles
    • Dominguez-Salas P, Moore SE, Baker MS, et al. Maternal nutrition at conception modulates DNA methylation of human metastable epialleles. Nat Commun 2014;5: 3746.
    • (2014) Nat Commun , vol.5 , pp. 3746
    • Dominguez-salas, P.1    Moore, S.E.2    Baker, M.S.3
  • 29
    • 84906088773 scopus 로고    scopus 로고
    • In utero effects
    • utero undernourishment perturbs the adult sperm methylome and intergenerational metabolism
    • Radford EJ, Ito M, Shi H, et al. In utero effects. In utero undernourishment perturbs the adult sperm methylome and intergenerational metabolism. Science 2014;345: 1255903.
    • (2014) Science , vol.345 , pp. 1255903
    • Radford, E.J.1    Ito, M.2    Shi, H.3
  • 30
    • 84906839886 scopus 로고    scopus 로고
    • Role of CpG deserts in the epigenetic transgenerational inheritance of differential DNA methylation regions
    • Skinner MK, Guerrero-Bosagna C. Role of CpG deserts in the epigenetic transgenerational inheritance of differential DNA methylation regions. BMC Genomics 2014;15: 692.
    • (2014) BMC Genomics , vol.15 , pp. 692
    • Skinner, M.K.1    Guerrero-bosagna, C.2
  • 31
    • 84991529670 scopus 로고    scopus 로고
    • Contribution of genetic variation to transgenerational inheritance of DNA methylation
    • McRae AF, Powell JE, Henders AK, et al. Contribution of genetic variation to transgenerational inheritance of DNA methylation. Genome Biol 2014;15: R73.
    • (2014) Genome Biol , vol.15 , pp. R73
    • McRae, A.F.1    Powell, J.E.2    Henders, A.K.3
  • 32
    • 40849139208 scopus 로고    scopus 로고
    • Epigenetics in cancer
    • Esteller M. Epigenetics in cancer. N Engl J Med 2008;358: 1148-59.
    • (2008) N Engl J Med , vol.358 , pp. 1148-1159
    • Esteller, M.1
  • 33
    • 80053144962 scopus 로고    scopus 로고
    • A decade of exploring the cancer epigenome - biological and translational implications
    • Baylin SB, Jones PA. A decade of exploring the cancer epigenome - biological and translational implications. Nat Rev Cancer 2011;11: 726-34.
    • (2011) Nat Rev Cancer , vol.11 , pp. 726-734
    • Baylin, S.B.1    Jones, P.A.2
  • 34
    • 84863986133 scopus 로고    scopus 로고
    • Functions of DNA methylation: islands, start sites, gene bodies and beyond
    • Jones PA. Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat Rev Genet 2012;13: 484-92.
    • (2012) Nat Rev Genet , vol.13 , pp. 484-492
    • Jones, P.A.1
  • 36
    • 0020699979 scopus 로고
    • Hypomethylation distinguishes genes of some human cancers from their normal counter-parts
    • Feinberg AP, Vogelstein B. Hypomethylation distinguishes genes of some human cancers from their normal counter-parts. Nature 1983;301: 89-92.
    • (1983) Nature , vol.301 , pp. 89-92
    • Feinberg, A.P.1    Vogelstein, B.2
  • 37
    • 0032960181 scopus 로고    scopus 로고
    • Cancer epigenetics comes of age
    • Jones PA, Laird PW. Cancer epigenetics comes of age. Nat Genet 1999;21: 163-7.
    • (1999) Nat Genet , vol.21 , pp. 163-167
    • Jones, P.A.1    Laird, P.W.2
  • 38
    • 84907011938 scopus 로고    scopus 로고
    • Targeted p16Ink4a epimutation causes tumorigenesis and reduces survival in mice
    • Yu DH, Waterland RA, Zhang P, et al. Targeted p16Ink4a epimutation causes tumorigenesis and reduces survival in mice. J Clin Invest 2014;124: 3708-12.
    • (2014) J Clin Invest , vol.124 , pp. 3708-3712
    • Yu, D.H.1    Waterland, R.A.2    Zhang, P.3
  • 39
    • 79960927422 scopus 로고    scopus 로고
    • Increased methylation variation in epigenetic domains across cancer types
    • Hansen KD, Timp W, Bravo HC, et al. Increased methylation variation in epigenetic domains across cancer types. Nat Genet 2011;43: 768-75.
    • (2011) Nat Genet , vol.43 , pp. 768-775
    • Hansen, K.D.1    Timp, W.2    Bravo, H.C.3
  • 40
    • 33744805399 scopus 로고    scopus 로고
    • Specific activation of microRNA-127 with downregulation of the proto-onco-gene BCL6 by chromatin-modifying drugs in human cancer cells
    • Saito Y, Liang G, Egger G, et al. Specific activation of microRNA-127 with downregulation of the proto-onco-gene BCL6 by chromatin-modifying drugs in human cancer cells. Cancer Cell 2006;9: 435-43.
    • (2006) Cancer Cell , vol.9 , pp. 435-443
    • Saito, Y.1    Liang, G.2    Egger, G.3
  • 41
    • 78649274945 scopus 로고    scopus 로고
    • Genome architecture marked by retrotransposons modulates predisposition to DNA methylation in cancer
    • Estecio MR, Gallegos J, Vallot C, et al. Genome architecture marked by retrotransposons modulates predisposition to DNA methylation in cancer. Genome Res 2010;20: 1369-82.
    • (2010) Genome Res , vol.20 , pp. 1369-1382
    • Estecio, M.R.1    Gallegos, J.2    Vallot, C.3
  • 42
    • 0032830639 scopus 로고    scopus 로고
    • Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2
    • Amir RE, Van den Veyver IB, Wan M, et al. Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2. Nat Genet 1999;23: 185-8.
    • (1999) Nat Genet , vol.23 , pp. 185-188
    • Amir, R.E.1    Van den Veyver, I.B.2    Wan, M.3
  • 43
    • 0029022770 scopus 로고
    • Rubinstein-Taybi syndrome caused by mutations in the transcriptional co-activator CBP
    • Petrij F, Giles RH, Dauwerse HG, et al. Rubinstein-Taybi syndrome caused by mutations in the transcriptional co-activator CBP. Nature 1995;376: 348-51.
    • (1995) Nature , vol.376 , pp. 348-351
    • Petrij, F.1    Giles, R.H.2    Dauwerse, H.G.3
  • 44
    • 0026922707 scopus 로고
    • DNA methylation represses FMR-1 transcription in fragile X syndrome
    • Sutcliffe JS, Nelson DL, Zhang F, et al. DNA methylation represses FMR-1 transcription in fragile X syndrome. Hum Mol Genet 1992;1: 397-400.
    • (1992) Hum Mol Genet , vol.1 , pp. 397-400
    • Sutcliffe, J.S.1    Nelson, D.L.2    Zhang, F.3
  • 45
    • 56949102195 scopus 로고    scopus 로고
    • The epigenetic effects of amyloid-beta(1-40) on global DNA and neprilysin genes in murine cerebral endothelial cells
    • Chen KL, Wang SS, Yang YY, et al. The epigenetic effects of amyloid-beta(1-40) on global DNA and neprilysin genes in murine cerebral endothelial cells. Biochem Biophys Res Commun 2009;378: 57-61.
    • (2009) Biochem Biophys Res Commun , vol.378 , pp. 57-61
    • Chen, K.L.1    Wang, S.S.2    Yang, Y.Y.3
  • 46
    • 67649867069 scopus 로고    scopus 로고
    • Epigenetic dysregulation in cognitive disorders
    • Graff J, Mansuy IM. Epigenetic dysregulation in cognitive disorders. EurJ Neurosci 2009;30: 1-8.
    • (2009) EurJ Neurosci , vol.30 , pp. 1-8
    • Graff, J.1    Mansuy, I.M.2
  • 47
    • 70350148422 scopus 로고    scopus 로고
    • Chromatin regulation in drug addiction and depression
    • Renthal W, Nestler EJ. Chromatin regulation in drug addiction and depression. Dialogues Clin Neurosci 2009;11: 257-68.
    • (2009) Dialogues Clin Neurosci , vol.11 , pp. 257-268
    • Renthal, W.1    Nestler, E.J.2
  • 48
    • 21544433777 scopus 로고    scopus 로고
    • Reelin promoter hypermethylation in schizophrenia
    • Grayson DR, Jia X, Chen Y, et al. Reelin promoter hypermethylation in schizophrenia. Proc Natl Acad Sci USA 2005;102: 9341-6.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 9341-9346
    • Grayson, D.R.1    Jia, X.2    Chen, Y.3
  • 49
    • 3142672297 scopus 로고    scopus 로고
    • DNA methylation polymorphisms precede any histological sign of atherosclerosis in mice lacking apolipoprotein E
    • Lund G, Andersson L, Lauria M, et al. DNA methylation polymorphisms precede any histological sign of atherosclerosis in mice lacking apolipoprotein E. J Biol Chem 2004;279: 29147-54.
    • (2004) J Biol Chem , vol.279 , pp. 29147-29154
    • Lund, G.1    Andersson, L.2    Lauria, M.3
  • 50
    • 78650291801 scopus 로고    scopus 로고
    • Obesity related methylation changes in DNA of peripheral blood leukocytes
    • Wang X, Zhu H, Snieder H, et al. Obesity related methylation changes in DNA of peripheral blood leukocytes. BMC Med 2010;8: 87.
    • (2010) BMC Med , vol.8 , pp. 87
    • Wang, X.1    Zhu, H.2    Snieder, H.3
  • 51
    • 84927073068 scopus 로고    scopus 로고
    • Newborns of obese parents have altered DNA methylation patterns at imprinted genes
    • Soubry A, Murphy SK, Wang F, et al. Newborns of obese parents have altered DNA methylation patterns at imprinted genes. Int J Obes (Lond) 2013; doi: 10.1038/ijo.2013.193.
    • (2013) Int J Obes (Lond)
    • Soubry, A.1    Murphy, S.K.2    Wang, F.3
  • 52
    • 78650446334 scopus 로고    scopus 로고
    • Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals
    • Carone BR, Fauquier L, Habib N, et al. Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals. Cell 2010;143: 1084-96.
    • (2010) Cell , vol.143 , pp. 1084-1096
    • Carone, B.R.1    Fauquier, L.2    Habib, N.3
  • 53
    • 84857191455 scopus 로고    scopus 로고
    • Demethylation of the FCER1G promoter leads to FcepsilonRI overexpression on monocytes of patients with atopic dermatitis
    • Liang Y, Wang P, Zhao M, et al. Demethylation of the FCER1G promoter leads to FcepsilonRI overexpression on monocytes of patients with atopic dermatitis. Allergy 2012;67: 424-30.
    • (2012) Allergy , vol.67 , pp. 424-430
    • Liang, Y.1    Wang, P.2    Zhao, M.3
  • 54
    • 75749090357 scopus 로고    scopus 로고
    • Key role of ERK pathway signaling in lupus
    • Gorelik G, Richardson B. Key role of ERK pathway signaling in lupus. Autoimmunity 2010;43: 17-22.
    • (2010) Autoimmunity , vol.43 , pp. 17-22
    • Gorelik, G.1    Richardson, B.2
  • 55
    • 77955651636 scopus 로고    scopus 로고
    • Epigenetic alterations in aging
    • Gonzalo S. Epigenetic alterations in aging. J Appl Physiol 2010;109: 586-97.
    • (2010) J Appl Physiol , vol.109 , pp. 586-597
    • Gonzalo, S.1
  • 56
    • 84884692057 scopus 로고    scopus 로고
    • DNA methylation presents distinct binding sites for human transcription factors
    • Hu S, Wan J, Su Y, et al. DNA methylation presents distinct binding sites for human transcription factors. eLife 2013;2: e00726.
    • (2013) eLife , vol.2 , pp. e00726
    • Hu, S.1    Wan, J.2    Su, Y.3
  • 57
    • 84902596852 scopus 로고    scopus 로고
    • Single-cell nucleosome mapping reveals the molecular basis of gene expression heterogeneity
    • Smalla EC, Xi L, Wang JP, et al. Single-cell nucleosome mapping reveals the molecular basis of gene expression heterogeneity. Proc Natl Acad Sci USA 2014;111: E2462-71.
    • (2014) Proc Natl Acad Sci USA , vol.111 , pp. E2462-E2471
    • Smalla, E.C.1    Xi, L.2    Wang, J.P.3
  • 58
    • 77954659099 scopus 로고    scopus 로고
    • Relationship between nucleosome positioning and DNA methylation
    • Chodavarapu RK, Feng S, Bernatavichute YV, et al. Relationship between nucleosome positioning and DNA methylation. Nature 2010;466: 388-92.
    • (2010) Nature , vol.466 , pp. 388-392
    • Chodavarapu, R.K.1    Feng, S.2    Bernatavichute, Y.V.3
  • 59
    • 84899627202 scopus 로고    scopus 로고
    • Training-free atomistic prediction of nucleosome occupancy
    • Minary P, Levitt M. Training-free atomistic prediction of nucleosome occupancy. Proc Natl Acad Sci USA 2014;111: 6293-8.
    • (2014) Proc Natl Acad Sci USA , vol.111 , pp. 6293-6298
    • Minary, P.1    Levitt, M.2
  • 60
    • 84888223867 scopus 로고    scopus 로고
    • Understanding the connection between epigenetic DNA methylation and nucleosome positioning from computer simulations
    • Portella G, Battistini F, Orozco M. Understanding the connection between epigenetic DNA methylation and nucleosome positioning from computer simulations. PLoS Comput Biol 2013;9: e1003354.
    • (2013) PLoS Comput Biol , vol.9 , pp. e1003354
    • Portella, G.1    Battistini, F.2    Orozco, M.3
  • 61
    • 0037068372 scopus 로고    scopus 로고
    • DNA methylation and chromatin-un-raveling the tangled web
    • Robertson KD. DNA methylation and chromatin-un-raveling the tangled web. Oncogene 2002;21: 5361-79.
    • (2002) Oncogene , vol.21 , pp. 5361-5379
    • Robertson, K.D.1
  • 62
    • 0034744639 scopus 로고    scopus 로고
    • Aberrant patterns of DNA methylation, chromatin formation and gene expression in cancer
    • Baylin SB, Esteller M, Rountree MR, et al. Aberrant patterns of DNA methylation, chromatin formation and gene expression in cancer. Hum Mol Genet 2001;10: 687-92.
    • (2001) Hum Mol Genet , vol.10 , pp. 687-692
    • Baylin, S.B.1    Esteller, M.2    Rountree, M.R.3
  • 63
    • 84876245094 scopus 로고    scopus 로고
    • Probing DNA shape and methylation state on a genomic scale with DNase I
    • Lazarovici A, Zhou T, Shafer A, et al. Probing DNA shape and methylation state on a genomic scale with DNase I. Proc Natl Acad Sci USA 2013;110: 6376-81.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 6376-6381
    • Lazarovici, A.1    Zhou, T.2    Shafer, A.3
  • 64
    • 84865708757 scopus 로고    scopus 로고
    • An expansive human regulatory lexicon encoded in transcription factor foot-prints
    • Neph S, Vierstra J, Stergachis AB, et al. An expansive human regulatory lexicon encoded in transcription factor foot-prints. Nature 2012;489: 83-90.
    • (2012) Nature , vol.489 , pp. 83-90
    • Neph, S.1    Vierstra, J.2    Stergachis, A.B.3
  • 65
    • 84894613651 scopus 로고    scopus 로고
    • Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification
    • He HH, Meyer CA, Hu SS, et al. Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification. Nat Methods 2014;11: 73-8.
    • (2014) Nat Methods , vol.11 , pp. 73-78
    • He, H.H.1    Meyer, C.A.2    Hu, S.S.3
  • 66
    • 70350686719 scopus 로고    scopus 로고
    • The role of DNA shape in protein-DNA recognition
    • Rohs R, West SM, Sosinsky A, et al. The role of DNA shape in protein-DNA recognition. Nature 2009;461: 1248-53.
    • (2009) Nature , vol.461 , pp. 1248-1253
    • Rohs, R.1    West, S.M.2    Sosinsky, A.3
  • 67
    • 84872522659 scopus 로고    scopus 로고
    • Opposites attract: shape and electrostatic complementarity in protein-DNA complexes
    • Schlick T (ed), London: Royal Society of Chemistry
    • Harris R, Mackoy T, Dantas Machado AC, et al. Opposites attract: shape and electrostatic complementarity in protein-DNA complexes. In: Schlick T (ed). Innovations in Biomolecular Modeling and Simulation, Vol. 2. London: Royal Society of Chemistry, 2012:53-80.
    • (2012) Innovations in Biomolecular Modeling and Simulation , vol.2 , pp. 53-80
    • Harris, R.1    Mackoy, T.2    Dantas Machado, A.C.3
  • 68
    • 0026354983 scopus 로고
    • DNase I-induced DNA conformation. 2 A structure of a DNase I-octamer complex
    • Lahm A, Suck D. DNase I-induced DNA conformation. 2 A structure of a DNase I-octamer complex. J Mol Biol 1991;222: 645-67.
    • (1991) J Mol Biol , vol.222 , pp. 645-667
    • Lahm, A.1    Suck, D.2
  • 69
    • 26444478194 scopus 로고    scopus 로고
    • Structural and energetic origins of sequence-specific DNA bending: Monte Carlo simulations of papillomavirus E2-DNA binding sites
    • Rohs R, Sklenar H, Shakked Z. Structural and energetic origins of sequence-specific DNA bending: Monte Carlo simulations of papillomavirus E2-DNA binding sites. Structure 2005;13: 1499-509.
    • (2005) Structure , vol.13 , pp. 1499-1509
    • Rohs, R.1    Sklenar, H.2    Shakked, Z.3
  • 70
    • 84895833555 scopus 로고    scopus 로고
    • Conformations of p53 response elements in solution deduced using site-directed spin labeling and Monte Carlo sampling
    • Zhang X, Dantas Machado AC, Ding Y, et al. Conformations of p53 response elements in solution deduced using site-directed spin labeling and Monte Carlo sampling. Nucleic Acids Res 2014;42: 2789-97.
    • (2014) Nucleic Acids Res , vol.42 , pp. 2789-2797
    • Zhang, X.1    Dantas Machado, A.C.2    Ding, Y.3
  • 71
    • 84883590358 scopus 로고    scopus 로고
    • DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale
    • Zhou T, Yang L, Lu Y, et al. DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale. Nucleic Acids Res 2013;41: W56-62.
    • (2013) Nucleic Acids Res , vol.41 , pp. W56-W62
    • Zhou, T.1    Yang, L.2    Lu, Y.3
  • 72
    • 77950519937 scopus 로고    scopus 로고
    • Origins of specificity in protein-DNA recognition
    • Rohs R, Jin X, West SM, et al. Origins of specificity in protein-DNA recognition. Annu Rev Biochem 2010;79: 233-69.
    • (2010) Annu Rev Biochem , vol.79 , pp. 233-269
    • Rohs, R.1    Jin, X.2    West, S.M.3
  • 73
    • 84902810053 scopus 로고    scopus 로고
    • In pursuit of design principles of regulatory sequences
    • Levo M, Segal E. In pursuit of design principles of regulatory sequences. Nat Rev Genet 2014;15: 453-68.
    • (2014) Nat Rev Genet , vol.15 , pp. 453-468
    • Levo, M.1    Segal, E.2
  • 74
    • 84906935775 scopus 로고    scopus 로고
    • Absence of a simple code: how transcription factors read the genome
    • Slattery M, Zhou T, Yang L, et al. Absence of a simple code: how transcription factors read the genome. Trends Biochem Sci 2014;39: 381-99.
    • (2014) Trends Biochem Sci , vol.39 , pp. 381-399
    • Slattery, M.1    Zhou, T.2    Yang, L.3
  • 75
    • 84892690160 scopus 로고    scopus 로고
    • Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions
    • Feldmann A, Ivanek R, Murr R, et al. Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions. PLoS Genet 2013;9: e1003994.
    • (2013) PLoS Genet , vol.9 , pp. e1003994
    • Feldmann, A.1    Ivanek, R.2    Murr, R.3
  • 76
    • 76749132083 scopus 로고    scopus 로고
    • General transcription factor binding at CpG islands in normal cells correlates with resistance to de novo DNA methylation in cancer cells
    • Gebhard C, Benner C, Ehrich M, et al. General transcription factor binding at CpG islands in normal cells correlates with resistance to de novo DNA methylation in cancer cells. Cancer Res 2010;70: 1398-407.
    • (2010) Cancer Res , vol.70 , pp. 1398-1407
    • Gebhard, C.1    Benner, C.2    Ehrich, M.3
  • 77
    • 84860437700 scopus 로고    scopus 로고
    • Impact of methylation on the physical properties of DNA
    • Perez A, Castellazzi CL, Battistini F, et al. Impact of methylation on the physical properties of DNA. Biophys J 2012;102: 2140-8.
    • (2012) Biophys J , vol.102 , pp. 2140-2148
    • Perez, A.1    Castellazzi, C.L.2    Battistini, F.3
  • 78
    • 80455168293 scopus 로고    scopus 로고
    • Cytosine methylation alters DNA mechanical properties
    • Severin PM, Zou X, Gaub HE, et al. Cytosine methylation alters DNA mechanical properties. Nucleic Acids Res 2011;39: 8740-51.
    • (2011) Nucleic Acids Res , vol.39 , pp. 8740-8751
    • Severin, P.M.1    Zou, X.2    Gaub, H.E.3
  • 79
    • 77956120147 scopus 로고    scopus 로고
    • Sequence-specific recognition of methylated DNA by human zinc-finger proteins
    • Sasai N, Nakao M, Defossez PA. Sequence-specific recognition of methylated DNA by human zinc-finger proteins. Nucleic Acids Res 2010;38: 5015-22.
    • (2010) Nucleic Acids Res , vol.38 , pp. 5015-5022
    • Sasai, N.1    Nakao, M.2    Defossez, P.A.3
  • 80
    • 84864301890 scopus 로고    scopus 로고
    • The role of methylbinding proteins in chromatin organization and epigenome maintenance
    • Fournier A, Sasai N, Nakao M, et al. The role of methylbinding proteins in chromatin organization and epigenome maintenance. Brief Funct Genomics 2012;11: 251-64.
    • (2012) Brief Funct Genomics , vol.11 , pp. 251-264
    • Fournier, A.1    Sasai, N.2    Nakao, M.3
  • 81
    • 84859305463 scopus 로고    scopus 로고
    • Recognition of methylated DNA through methyl-CpG binding domain proteins
    • Zou X, Ma W, Solov'yov IA, et al. Recognition of methylated DNA through methyl-CpG binding domain proteins. Nucleic Acids Res 2012;40: 2747-58.
    • (2012) Nucleic Acids Res , vol.40 , pp. 2747-2758
    • Zou, X.1    Ma, W.2    Solov'yov, I.A.3
  • 82
    • 0031576993 scopus 로고    scopus 로고
    • Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5 CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC (Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA
    • Tippin DB, Sundaralingam M. Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5 CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC (Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. J Mol Biol 1997;267: 1171-85.
    • (1997) J Mol Biol , vol.267 , pp. 1171-1185
    • Tippin, D.B.1    Sundaralingam, M.2
  • 83
    • 64649095501 scopus 로고    scopus 로고
    • Nuance in the double-helix and its role in protein-DNA recognition
    • Rohs R, West SM, Liu P, et al. Nuance in the double-helix and its role in protein-DNA recognition. Curr Opin Struct Biol 2009;19: 171-7.
    • (2009) Curr Opin Struct Biol , vol.19 , pp. 171-177
    • Rohs, R.1    West, S.M.2    Liu, P.3
  • 84
    • 84876955991 scopus 로고    scopus 로고
    • Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape
    • Gordân R, Shen N, Dror I, et al. Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape. Cell Rep 2013;3: 1093-104.
    • (2013) Cell Rep , vol.3 , pp. 1093-1104
    • Gordân, R.1    Shen, N.2    Dror, I.3
  • 85
    • 84891768983 scopus 로고    scopus 로고
    • TFBSshape: a motif database for DNA shape features of transcription factor binding sites
    • Yang L, Zhou T, Dror I, et al. TFBSshape: a motif database for DNA shape features of transcription factor binding sites. Nucleic Acids Res 2014;42: D148-55.
    • (2014) Nucleic Acids Res , vol.42 , pp. D148-D155
    • Yang, L.1    Zhou, T.2    Dror, I.3
  • 86
    • 84891777143 scopus 로고    scopus 로고
    • Covariation between homeodomain transcription factors and the shape of their DNA binding sites
    • Dror I, Zhou T, Mandel-Gutfreund Y, et al. Covariation between homeodomain transcription factors and the shape of their DNA binding sites. Nucleic Acids Res 2014;42: 430-41.
    • (2014) Nucleic Acids Res , vol.42 , pp. 430-441
    • Dror, I.1    Zhou, T.2    Mandel-gutfreund, Y.3
  • 87
    • 0035906936 scopus 로고    scopus 로고
    • Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA
    • Ohki I, Shimotake N, Fujita N, et al. Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA. Cell 2001;105: 487-97.
    • (2001) Cell , vol.105 , pp. 487-497
    • Ohki, I.1    Shimotake, N.2    Fujita, N.3
  • 88
    • 80052016907 scopus 로고    scopus 로고
    • Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence
    • Scarsdale JN, Webb HD, Ginder GD, et al. Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence. Nucleic Acids Res 2011;39: 6741-52.
    • (2011) Nucleic Acids Res , vol.39 , pp. 6741-6752
    • Scarsdale, J.N.1    Webb, H.D.2    Ginder, G.D.3
  • 89
    • 0032079703 scopus 로고    scopus 로고
    • Hydration and recognition of methylated CpG steps in DNA
    • Mayer-Jung C, Moras D, Timsit Y. Hydration and recognition of methylated CpG steps in DNA. EMBO J 1998;17: 2709-18.
    • (1998) EMBO J , vol.17 , pp. 2709-2718
    • Mayer-jung, C.1    Moras, D.2    Timsit, Y.3
  • 90
    • 39549090166 scopus 로고    scopus 로고
    • MeCP2 binding to DNA depends upon hydration at methyl-CpG
    • Ho KL, McNae IW, Schmiedeberg L, et al. MeCP2 binding to DNA depends upon hydration at methyl-CpG. Mol Cell 2008;29: 525-31.
    • (2008) Mol Cell , vol.29 , pp. 525-531
    • Ho, K.L.1    McNae, I.W.2    Schmiedeberg, L.3
  • 91
    • 84866544521 scopus 로고    scopus 로고
    • Molecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein Kaiso
    • Buck-Koehntop BA, Stanfield RL, Ekiert DC, et al. Molecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein Kaiso. Proc Natl Acad Sci USA 2012;109: 15229-34.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 15229-15234
    • Buck-koehntop, B.A.1    Stanfield, R.L.2    Ekiert, D.C.3
  • 92
    • 84899840015 scopus 로고    scopus 로고
    • Structural basis for Klf4 recognition of methylated DNA
    • Liu Y, Olanrewaju YO, Zheng Y, et al. Structural basis for Klf4 recognition of methylated DNA. Nucleic Acids Res 2014;42: 4859-67.
    • (2014) Nucleic Acids Res , vol.42 , pp. 4859-4867
    • Liu, Y.1    Olanrewaju, Y.O.2    Zheng, Y.3
  • 93
    • 80052260520 scopus 로고    scopus 로고
    • The structure of the Klf4 DNA-binding domain links to self-renewal and macrophage differentiation
    • Schuetz A, Nana D, Rose C, et al. The structure of the Klf4 DNA-binding domain links to self-renewal and macrophage differentiation. Cell Mol Life Sci 2011;68: 3121-31.
    • (2011) Cell Mol Life Sci , vol.68 , pp. 3121-3131
    • Schuetz, A.1    Nana, D.2    Rose, C.3
  • 94
    • 84875505675 scopus 로고    scopus 로고
    • A common mode of recognition for methylated CpG
    • Liu Y, Zhang X, Blumenthal RM, et al. A common mode of recognition for methylated CpG. Trends Biochem Sci 2013;38: 177-83.
    • (2013) Trends Biochem Sci , vol.38 , pp. 177-183
    • Liu, Y.1    Zhang, X.2    Blumenthal, R.M.3
  • 95
    • 84868556202 scopus 로고    scopus 로고
    • An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence
    • Liu Y, Toh H, Sasaki H, et al. An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence. Genes Dev 2012;26: 2374-9.
    • (2012) Genes Dev , vol.26 , pp. 2374-2379
    • Liu, Y.1    Toh, H.2    Sasaki, H.3
  • 96
    • 0019318994 scopus 로고
    • DNA methylation and gene function
    • Razin A, Riggs AD. DNA methylation and gene function. Science 1980;210: 604-10.
    • (1980) Science , vol.210 , pp. 604-610
    • Razin, A.1    Riggs, A.D.2
  • 97
    • 39749145842 scopus 로고    scopus 로고
    • P22 c2 repressor-operator complex: mechanisms of direct and indirect read-out
    • Watkins D, Hsiao C, Woods KK, et al. P22 c2 repressor-operator complex: mechanisms of direct and indirect read-out. Biochemistry 2008;47: 2325-38.
    • (2008) Biochemistry , vol.47 , pp. 2325-2338
    • Watkins, D.1    Hsiao, C.2    Woods, K.K.3
  • 98
    • 0032540011 scopus 로고    scopus 로고
    • A role for CH... O interactions in protein-DNA recognition
    • Mandel-Gutfreund Y, Margalit H, Jernigan RL, et al. A role for CH... O interactions in protein-DNA recognition. J Mol Biol 1998;277: 1129-40.
    • (1998) J Mol Biol , vol.277 , pp. 1129-1140
    • Mandel-gutfreund, Y.1    Margalit, H.2    Jernigan, R.L.3
  • 99
    • 84879306703 scopus 로고    scopus 로고
    • Passive and active DNA methylation and the interplay with genetic variation in gene regulation
    • Gutierrez-Arcelus M, Lappalainen T, Montgomery SB, et al. Passive and active DNA methylation and the interplay with genetic variation in gene regulation. eLife 2013;2: e00523.
    • (2013) eLife , vol.2 , pp. e00523
    • Gutierrez-arcelus, M.1    Lappalainen, T.2    Montgomery, S.B.3
  • 100
    • 0026747761 scopus 로고
    • Purification, sequence, and cellular localization of a novel chromosomal to methylated DNA
    • Lewis JD, Meehan RR, Henzel WJ, et al. Purification, sequence, and cellular localization of a novel chromosomal to methylated DNA. Cell 1992;69: 905-14.
    • (1992) Cell , vol.69 , pp. 905-914
    • Lewis, J.D.1    Meehan, R.R.2    Henzel, W.J.3
  • 101
    • 0031837109 scopus 로고    scopus 로고
    • Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription
    • Jones PL, Veenstra GJ, Wade PA, et al. Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription. Nature 1998;19: 187-91.
    • (1998) Nature , vol.19 , pp. 187-191
    • Jones, P.L.1    Veenstra, G.J.2    Wade, P.A.3
  • 102
    • 0032574977 scopus 로고    scopus 로고
    • Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex
    • Nan X, Ng HH, Johnson CA, et al. Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex. Nature 1998;393: 386-9.
    • (1998) Nature , vol.393 , pp. 386-389
    • Nan, X.1    Ng, H.H.2    Johnson, C.A.3
  • 103
    • 0033945861 scopus 로고    scopus 로고
    • DNMT1 binds HDAC2 and a new co-repressor, DMAP1, to form a complex at replication foci
    • Rountree MR, Bachman KE, Baylin SB. DNMT1 binds HDAC2 and a new co-repressor, DMAP1, to form a complex at replication foci. Nat Genet 2000;25: 269-77.
    • (2000) Nat Genet , vol.25 , pp. 269-277
    • Rountree, M.R.1    Bachman, K.E.2    Baylin, S.B.3
  • 104
    • 0032845039 scopus 로고    scopus 로고
    • Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation
    • Wade PA, Gegonne A, Jones PL, et al. Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation. Nat Genet 1999;23: 62-6.
    • (1999) Nat Genet , vol.23 , pp. 62-66
    • Wade, P.A.1    Gegonne, A.2    Jones, P.L.3
  • 105
    • 55549141877 scopus 로고    scopus 로고
    • Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
    • Zilberman D, Coleman-Derr D, Ballinger T, et al. Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature 2008;456: 125-9.
    • (2008) Nature , vol.456 , pp. 125-129
    • Zilberman, D.1    Coleman-derr, D.2    Ballinger, T.3
  • 106
    • 84869765376 scopus 로고    scopus 로고
    • Proteopedia: 3D visualization and annotation of transcription factor-DNA readout modes
    • Dantas Machado AC, Saleebyan SB, Holmes BT, et al. Proteopedia: 3D visualization and annotation of transcription factor-DNA readout modes. Biochem Mol Biol Educ 2012;40: 400-1.
    • (2012) Biochem Mol Biol Educ , vol.40 , pp. 400-401
    • Dantas Machado, A.C.1    Saleebyan, S.B.2    Holmes, B.T.3
  • 107
    • 84901921616 scopus 로고    scopus 로고
    • Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers
    • Barozzi I, Simonatto M, Bonifacio S, et al. Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers. Mol Cell 2014;54: 844-57.
    • (2014) Mol Cell , vol.54 , pp. 844-857
    • Barozzi, I.1    Simonatto, M.2    Bonifacio, S.3
  • 108
    • 80052490463 scopus 로고    scopus 로고
    • Nucleosomes protect DNA from DNA methylation in vivo and in vitro
    • Felle M, Hoffmeister H, Rothammer J, et al. Nucleosomes protect DNA from DNA methylation in vivo and in vitro. Nucleic Acids Res 2011;39: 6956-69.
    • (2011) Nucleic Acids Res , vol.39 , pp. 6956-6969
    • Felle, M.1    Hoffmeister, H.2    Rothammer, J.3
  • 110
    • 84888994574 scopus 로고    scopus 로고
    • Cross-talk between site-specific transcription factors and DNA methylation states
    • Blattler A, Farnham PJ. Cross-talk between site-specific transcription factors and DNA methylation states. J Biol Chem 2013;288: 34287-94.
    • (2013) J Biol Chem , vol.288 , pp. 34287-34294
    • Blattler, A.1    Farnham, P.J.2
  • 111
    • 84895801889 scopus 로고    scopus 로고
    • Genomic patterns and context specific interpretation of DNA methylation
    • Baubec T, Schübeler D. Genomic patterns and context specific interpretation of DNA methylation. Curr Opin Genet Dev 2014;25: 85-92.
    • (2014) Curr Opin Genet Dev , vol.25 , pp. 85-92
    • Baubec, T.1    Schübeler, D.2
  • 112
    • 84870222914 scopus 로고    scopus 로고
    • Disentangling the many layers of eukaryotic transcriptional regulation
    • Lelli KM, Slattery M, Mann RS. Disentangling the many layers of eukaryotic transcriptional regulation. Annu Rev Genet 2012;46: 43-68.
    • (2012) Annu Rev Genet , vol.46 , pp. 43-68
    • Lelli, K.M.1    Slattery, M.2    Mann, R.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.