-
1
-
-
77950519937
-
-
R. Rohs, X. Jin, S. M. West, R. Joshi, B. Honig and R. S. Mann, Annu. Rev. Biochem., 2010, 79, 233-269.
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 233-269
-
-
Rohs, R.1
Jin, X.2
West, S.M.3
Joshi, R.4
Honig, B.5
Mann, R.S.6
-
2
-
-
64649095501
-
-
R. Rohs, S. M.West, P. Liu and B. Honig, Curr. Opin. Struct. Biol., 2009, 19, 171-177.
-
(2009)
Curr. Opin Struct. Biol.
, vol.19
, pp. 171-177
-
-
Rohs, R.1
West, S.M.2
Liu, P.3
Honig, B.4
-
3
-
-
0024284650
-
-
A. K. Aggarwal, D. W. Rodgers, M. Drottar, M. Ptashne and S. C. Harrison, Science, 1988, 242, 899-907.
-
(1988)
Science
, vol.242
, pp. 899-907
-
-
Aggarwal, A.K.1
Rodgers, D.W.2
Drottar, M.3
Ptashne, M.4
Harrison, S.C.5
-
4
-
-
0024294634
-
-
Z. Otwinowski,R.W. Schevitz, R. G. Zhang, C. L. Lawson,A. Joachimiak, R. Q. Marmorstein, B. F. Luisi and P. B. Sigler, Nature, 1988, 335, 321-329.
-
(1988)
Nature
, vol.335
, pp. 321-329
-
-
Otwinowski, Z.1
Schevitz, R.W.2
Zhang, R.G.3
Lawson, C.L.4
Joachimiak, A.5
Marmorstein, R.Q.6
Luisi, B.F.7
Sigler, P.B.8
-
10
-
-
0033647653
-
-
REVIEWS001
-
N. M. Luscombe, S. E. Austin, H. M. Berman and J. M. Thornton, Genome Biol., 2000, 1, REVIEWS001.
-
(2000)
Genome Biol.
, vol.1
-
-
Luscombe, N.M.1
Austin, S.E.2
Berman, H.M.3
Thornton, J.M.4
-
11
-
-
34447537903
-
-
ed. T. Ohyama, Georgetown, Tex.: Landes Bioscience; New York, NY.: Springer Science Business Media
-
V. B. Zhurkin, M. Y. Tolstorukov, F. Xu, A. V. Colasanti and W. K. Olson, in DNA conformation and transcription, ed. T. Ohyama, Georgetown, Tex.: Landes Bioscience; New York, NY.: Springer Science Business Media, 2005.
-
(2005)
DNA Conformation and Transcription
-
-
Zhurkin, V.B.1
Tolstorukov, M.Y.2
Xu, F.3
Colasanti, A.V.4
Olson, W.K.5
-
12
-
-
0000388872
-
-
ed. S. Neidle, Oxford, University Press London
-
D. M. Crothers and Z. Shakked, in Oxford Handbook of Nucleic Acid Structures, ed. S. Neidle, Oxford University Press, London, 1999, pp. 455-470.
-
(1999)
Oxford Handbook of Nucleic Acid Structures
, pp. 455-470
-
-
Crothers, D.M.1
Shakked, Z.2
-
17
-
-
70350686719
-
-
R. Rohs, S. M. West, A. Sosinsky, P. Liu, R. S. Mann and B. Honig, Nature, 2009, 461, 1248-1253.
-
(2009)
Nature
, vol.461
, pp. 1248-1253
-
-
Rohs, R.1
West, S.M.2
Sosinsky, A.3
Liu, P.4
Mann, R.S.5
Honig, B.6
-
18
-
-
35548931586
-
-
R. Joshi, J. M. Passner, R. Rohs, R. Jain, A. Sosinsky, M. A. Crickmore, V. Jacob, A. K. Aggarwal, B. Honig and R. S. Mann, Cell, 2007, 131, 530-543.
-
(2007)
Cell
, vol.131
, pp. 530-543
-
-
Joshi, R.1
Passner, J.M.2
Rohs, R.3
Jain, R.4
Sosinsky, A.5
Crickmore, M.A.6
Jacob, V.7
Aggarwal, A.K.8
Honig, B.9
Mann, R.S.10
-
19
-
-
1842411320
-
-
K. Luger, A. W. Mader, R. K. Richmond, D. F. Sargent and T. J. Richmond, Nature, 1997, 389, 251-260.
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
23
-
-
0022964504
-
-
I. Klapper, R. Hagstrom, R. Fine, K. Sharp and B. Honig, Proteins, 1986, 1, 47-59.
-
(1986)
Proteins
, vol.1
, pp. 47-59
-
-
Klapper, I.1
Hagstrom, R.2
Fine, R.3
Sharp, K.4
Honig, B.5
-
24
-
-
0025122169
-
-
K. A. Sharp, B. Honig and S. C. Harvey, Biochemistry, 1990, 29, 340-346.
-
(1990)
Biochemistry
, vol.29
, pp. 340-346
-
-
Sharp, K.A.1
Honig, B.2
Harvey, S.C.3
-
26
-
-
0033573008
-
-
G. A. Patikoglou, J. L. Kim, L. Sun, S. H. Yang, T. Kodadek and S. K. Burley, Genes Dev., 1999, 13, 3217-3230.
-
(1999)
Genes Dev.
, vol.13
, pp. 3217-3230
-
-
Patikoglou, G.A.1
Kim, J.L.2
Sun, L.3
Yang, S.H.4
Kodadek, T.5
Burley, S.K.6
-
27
-
-
0030451819
-
-
P. A. Rice, S. Yang, K. Mizuuchi and H. A. Nash, Cell, 1996, 87, 1295- 1306.
-
(1996)
Cell
, vol.87
, pp. 1295-1306
-
-
Rice, P.A.1
Yang, S.2
Mizuuchi, K.3
Nash, H.A.4
-
28
-
-
0036924813
-
-
J. Aishima, R. K. Gitti, J. E. Noah, H. H. Gan, T. Schlick and C. Wolberger, Nucleic Acids Res., 2002, 30, 5244-5252.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 5244-5252
-
-
Aishima, J.1
Gitti, R.K.2
Noah, J.E.3
Gan, H.H.4
Schlick, T.5
Wolberger, C.6
-
29
-
-
75849126765
-
-
Y. Chen, R. Dey and L. Chen, Structure, 2010, 18, 246-256.
-
(2010)
Structure
, vol.18
, pp. 246-256
-
-
Chen, Y.1
Dey, R.2
Chen, L.3
-
30
-
-
77950484709
-
-
M. Kitayner, H. Rozenberg, R. Rohs, O. Suad, D. Rabinovich, B. Honig and Z. Shakked, Nat. Struct. Mol. Biol., 2010, 17, 423-429.
-
(2010)
Nat. Struct Mol. Biol.
, vol.17
, pp. 423-429
-
-
Kitayner, M.1
Rozenberg, H.2
Rohs, R.3
Suad, O.4
Rabinovich, D.5
Honig, B.6
Shakked, Z.7
-
31
-
-
69849089318
-
-
A. R. Srinivasan, R. R. Sauers, M. O. Fenley, A. H. Boschitsch, A. Matsumoto, A. V. Colasanti and W. K. Olson, Biophys. Rev., 2009, 1, 13-20.
-
(2009)
Biophys. Rev.
, vol.1
, pp. 13-20
-
-
Srinivasan, A.R.1
Sauers, R.R.2
Fenley, M.O.3
Boschitsch, A.H.4
Matsumoto, A.5
Colasanti, A.V.6
Olson, W.K.7
-
33
-
-
0032462645
-
-
M. Montrel, V. P. Chuprina, V. I. Poltev, W. Nerdal and E. Sletten, J. Biomol. Struct. Dyn., 1998, 16, 631-637.
-
(1998)
J. Biomol. Struct. Dyn.
, vol.16
, pp. 631-637
-
-
Montrel, M.1
Chuprina, V.P.2
Poltev, V.I.3
Nerdal, W.4
Sletten, E.5
-
34
-
-
0000184631
-
-
P. K. Weiner, R. Langridge, J. M. Blaney, R. Schaefer and P. A. Kollman, Proc. Natl. Acad. Sci. USA, 1982, 79, 3754-3758.
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 3754-3758
-
-
Weiner, P.K.1
Langridge, R.2
Blaney, J.M.3
Schaefer, R.4
Kollman, P.A.5
-
36
-
-
0024580271
-
-
B. Jayaram, K. A. Sharp and B. Honig, Biopolymers, 1989, 28, 975-993.
-
(1989)
Biopolymers
, vol.28
, pp. 975-993
-
-
Jayaram, B.1
Sharp, K.A.2
Honig, B.3
-
37
-
-
0032707625
-
-
K. Chin, K. A. Sharp, B. Honig and A. M. Pyle, Nat. Struct. Biol., 1999, 6, 1055-1061.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 1055-1061
-
-
Chin, K.1
Sharp, K.A.2
Honig, B.3
Pyle, A.M.4
-
39
-
-
0021959842
-
-
M. L. Kopka, C. Yoon, D. Goodsell, P. Pjura and R. E. Dickerson, Proc. Natl. Acad. Sci. USA., 1985, 82, 1376-1380.
-
(1985)
Proc. Natl. Acad. Sci. USA.
, vol.82
, pp. 1376-1380
-
-
Kopka, M.L.1
Yoon, C.2
Goodsell, D.3
Pjura, P.4
Dickerson, R.E.5
-
40
-
-
0031047279
-
-
M. A. Young, B. Jayaram and D. L. Beveridge, J. Am. Chem. Soc., 1997, 119, 59-69.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 59-69
-
-
Young, M.A.1
Jayaram, B.2
Beveridge, D.L.3
-
41
-
-
40849094011
-
-
D. Min, H. Li, G. Li, B. A. Berg,M. O. Fenley and W. Yang, Chem. Phys. Lett., 2008, 454, 391-395.
-
(2008)
Chem. Phys. Lett.
, vol.454
, pp. 391-395
-
-
Min, D.1
Li, H.2
Li, G.3
Berg, B.A.4
Fenley, M.O.5
Yang, W.6
-
42
-
-
65449166076
-
-
A. G. Tsai, A. E. Engelhart, M. M. Hatmal, S. I. Houston, N. V. Hud, I. S. Haworth and M. R. Lieber, J. Biol. Chem., 2009, 284, 7157-7164.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 7157-7164
-
-
Tsai, A.G.1
Engelhart, A.E.2
Hatmal, M.M.3
Houston, S.I.4
Hud, N.V.5
Haworth, I.S.6
Lieber, M.R.7
-
43
-
-
0028773281
-
-
M. Suzuki, Structure, 1994, 2, 317-326.
-
(1994)
Structure
, vol.2
, pp. 317-326
-
-
Suzuki, M.1
-
44
-
-
33745209412
-
-
M. Kitayner, H. Rozenberg, N. Kessler, D. Rabinovich, L. Shaulov, T. E. Haran and Z. Shakked, Mol. Cell, 2006, 22, 741-753.
-
(2006)
Mol. Cell
, vol.22
, pp. 741-753
-
-
Kitayner, M.1
Rozenberg, H.2
Kessler, N.3
Rabinovich, D.4
Shaulov, L.5
Haran, T.E.6
Shakked, Z.7
-
45
-
-
3142674288
-
-
D. T. Nair, R. E. Johnson, S. Prakash, L. Prakash and A. K. Aggarwal, Nature, 2004, 430, 377-380.
-
(2004)
Nature
, vol.430
, pp. 377-380
-
-
Nair, D.T.1
Johnson, R.E.2
Prakash, S.3
Prakash, L.4
Aggarwal, A.K.5
-
46
-
-
26444528004
-
-
D. T. Nair, R. E. Johnson, L. Prakash, S. Prakash and A. K. Aggarwal, Structure, 2005, 13, 1569-1577.
-
(2005)
Structure
, vol.13
, pp. 1569-1577
-
-
Nair, D.T.1
Johnson, R.E.2
Prakash, L.3
Prakash, S.4
Aggarwal, A.K.5
-
47
-
-
23044439823
-
-
R. E. Johnson, L. Prakash and S. Prakash, Proc. Natl. Acad. Sci. USA, 2005, 102, 10466-10471.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 10466-10471
-
-
Johnson, R.E.1
Prakash, L.2
Prakash, S.3
-
48
-
-
84885848994
-
-
E. N. Nikolova, E. Kim, A. A. Wise, P. J. O'Brien, I. Andricioaei and H. M. Al-Hashimi, Nature, 2011.
-
Nature
, vol.2011
-
-
Nikolova, E.N.1
Kim, E.2
Wise, A.A.3
O'Brien, P.J.4
Andricioaei, I.5
Al-Hashimi, H.M.6
-
49
-
-
60149104606
-
-
J. W. Locasale, A. A. Napoli, S. Chen, H. M. Berman and C. L. Lawson, J. Mol. Biol., 2009, 386, 1054-1065.
-
(2009)
J. Mol. Biol.
, vol.386
, pp. 1054-1065
-
-
Locasale, J.W.1
Napoli, A.A.2
Chen, S.3
Berman, H.M.4
Lawson, C.L.5
-
50
-
-
24044494651
-
-
M. Kitayner, H. Rozenberg, D. Rabinovich and Z. Shakked, Acta Crystallogr. D Biol. Crystallogr., 2005, 61, 236-246.
-
(2005)
Acta Crystallogr. D Biol. Crystallogr.
, vol.61
, pp. 236-246
-
-
Kitayner, M.1
Rozenberg, H.2
Rabinovich, D.3
Shakked, Z.4
-
51
-
-
0021103971
-
-
Z. Shakked, D. Rabinovich, O. Kennard, W. B. Cruse, S. A. Salisbury and M. A. Viswamitra, J. Mol. Biol., 1983, 166, 183-201.
-
(1983)
J. Mol. Biol.
, vol.166
, pp. 183-201
-
-
Shakked, Z.1
Rabinovich, D.2
Kennard, O.3
Cruse, W.B.4
Salisbury, S.A.5
Viswamitra, M.A.6
-
53
-
-
0034655642
-
-
H. Robinson, Y. G. Gao, R. Sanishvili, A. Joachimiak and A. H.-J. Wang, Nucleic Acids Res., 2000, 28, 1760-1766.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1760-1766
-
-
Robinson, H.1
Gao, Y.G.2
Sanishvili, R.3
Joachimiak, A.4
Wang, A.H.-J.5
-
54
-
-
0029131632
-
-
Y. G. Gao, J. H. van Boom and A. H. Wang, Biophys. J., 1995, 69, 559-568.
-
(1995)
Biophys. J.
, vol.69
, pp. 559-568
-
-
Gao, Y.G.1
Van Boom, J.H.2
Wang, A.H.3
-
56
-
-
0028128015
-
-
G. Lamm, L. Wong and G. R. Pack, Biopolymers, 1994, 34, 227-237.
-
(1994)
Biopolymers
, vol.34
, pp. 227-237
-
-
Lamm, G.1
Wong, L.2
Pack, G.R.3
-
58
-
-
0018689799
-
-
A. H. Wang, G. J. Quigley, F. J. Kolpak, J. L. Crawford, J. H. van Boom, G. van der Marel and A. Rich, Nature, 1979, 282, 680-686.
-
(1979)
Nature
, vol.282
, pp. 680-686
-
-
Wang, A.H.1
Quigley, G.J.2
Kolpak, F.J.3
Crawford, J.L.4
Van Boom, J.H.5
Marel Der G.Van6
Rich, A.7
-
59
-
-
13044313489
-
-
T. Schwartz, K. Shafer, K. Lowenhaupt, E. Hanlon, A. Herbert and A. Rich, Acta Crystallogr. D Biol. Crystallogr., 1999, 55, 1362-1364.
-
(1999)
Acta Crystallogr. D Biol. Crystallogr.
, vol.55
, pp. 1362-1364
-
-
Schwartz, T.1
Shafer, K.2
Lowenhaupt, K.3
Hanlon, E.4
Herbert, A.5
Rich, A.6
-
60
-
-
64549150050
-
-
B. Konig, J. J. Muller, E. Lanka and U. Heinemann, Nucleic Acids Res., 2009, 37, 1915-1924.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1915-1924
-
-
Konig, B.1
Muller, J.J.2
Lanka, E.3
Heinemann, U.4
-
61
-
-
0026656038
-
-
R. S. Hegde, S. R. Grossman, L. A. Laimins and P. B. Sigler, Nature, 1992, 359, 505-512.
-
(1992)
Nature
, vol.359
, pp. 505-512
-
-
Hegde, R.S.1
Grossman, S.R.2
Laimins, L.A.3
Sigler, P.B.4
-
63
-
-
0032417684
-
-
H. Rozenberg, D. Rabinovich, F. Frolow, R. S. Hegde and Z. Shakked, Proc. Natl. Acad. Sci. USA, 1998, 95, 15194-15199.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 15194-15199
-
-
Rozenberg, H.1
Rabinovich, D.2
Frolow, F.3
Hegde, R.S.4
Shakked, Z.5
-
64
-
-
0035902529
-
-
J. Hizver, H. Rozenberg, F. Frolow, D. Rabinovich and Z. Shakked, Proc. Natl. Acad. Sci. USA, 2001, 98, 8490-8495.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8490-8495
-
-
Hizver, J.1
Rozenberg, H.2
Frolow, F.3
Rabinovich, D.4
Shakked, Z.5
-
65
-
-
26444478194
-
-
R. Rohs, H. Sklenar and Z. Shakked, Structure, 2005, 13, 1499-1509.
-
(2005)
Structure
, vol.13
, pp. 1499-1509
-
-
Rohs, R.1
Sklenar, H.2
Shakked, Z.3
-
66
-
-
0030046809
-
-
M. H. Werner, A. M. Gronenborn and G. M. Clore, Science, 1996, 271, 778-784.
-
(1996)
Science
, vol.271
, pp. 778-784
-
-
Werner, M.H.1
Gronenborn, A.M.2
Clore, G.M.3
-
67
-
-
0035831044
-
-
T. H. Tahirov, T. Inoue-Bungo, H. Morii, A. Fujikawa, M. Sasaki, K. Kimura, M. Shiina, K. Sato, T. Kumasaka, M. Yamamoto, S. Ishii and K. Ogata, Cell, 2001, 104, 755-767.
-
(2001)
Cell
, vol.104
, pp. 755-767
-
-
Tahirov, T.H.1
Inoue-Bungo, T.2
Morii, H.3
Fujikawa, A.4
Sasaki, M.5
Kimura, K.6
Shiina, M.7
Sato, K.8
Kumasaka, T.9
Yamamoto, M.10
Ishii, S.11
Ogata, K.12
-
68
-
-
0036774088
-
-
D. Bartfeld, L. Shimon, G. C. Couture, D. Rabinovich, F. Frolow, D. Levanon, Y. Groner and Z. Shakked, Structure, 2002, 10, 1395-1407.
-
(2002)
Structure
, vol.10
, pp. 1395-1407
-
-
Bartfeld, D.1
Shimon, L.2
Couture, G.C.3
Rabinovich, D.4
Frolow, F.5
Levanon, D.6
Groner, Y.7
Shakked, Z.8
-
69
-
-
0027490354
-
-
R. Fairman, R. K. Beran-Steed, S. J. Anthony-Cahill, J. D. Lear, W. F. Stafford II, W. F. DeGrado, P. A. Benfield and S. L. Brenner, Proc. Natl. Acad. Sci. USA, 1993, 90, 10429-10433.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 10429-10433
-
-
Fairman, R.1
Beran-Steed, R.K.2
Anthony-Cahill, S.J.3
Lear, J.D.4
Stafford, I.I.W.F.5
Degrado, W.F.6
Benfield, P.A.7
Brenner, S.L.8
-
70
-
-
0033574510
-
-
S. Jones, P. van Heyningen, H. M. Berman and J. M. Thornton, J. Mol. Biol., 1999, 287, 877-896.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 877-896
-
-
Jones, S.1
Van Heyningen, P.2
Berman, H.M.3
Thornton, J.M.4
-
71
-
-
0037470573
-
-
E. W. Stawiski, L. M. Gregoret and Y. Mandel-Gutfreund, J. Mol. Biol., 2003, 326, 1065-1079.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 1065-1079
-
-
Stawiski, E.W.1
Gregoret, L.M.2
Mandel-Gutfreund, Y.3
-
72
-
-
2542557409
-
-
Y. Tsuchiya, K. Kinoshita and H. Nakamura, Proteins, 2004, 55, 885-894.
-
(2004)
Proteins
, vol.55
, pp. 885-894
-
-
Tsuchiya, Y.1
Kinoshita, K.2
Nakamura, H.3
-
73
-
-
0022368152
-
-
J. Warwicker, D. Ollis, F. M. Richards and T. A. Steitz, J. Mol. Biol., 1985, 186, 645-649.
-
(1985)
J. Mol. Biol.
, vol.186
, pp. 645-649
-
-
Warwicker, J.1
Ollis, D.2
Richards, F.M.3
Steitz, T.A.4
-
74
-
-
0028500861
-
-
P. N. S. Yadav, M. J. Modak and J. S. Yadav, J. Mol. Recognit., 1994, 7, 207-209.
-
(1994)
J. Mol. Recognit.
, vol.7
, pp. 207-209
-
-
Yadav, P.N.S.1
Modak, M.J.2
Yadav, J.S.3
-
77
-
-
62649160355
-
-
G. Nimrod, A. Szilagyi, C. Leslie and N. Ben-Tal, J. Mol. Biol., 2009, 387, 1040-1053.
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 1040-1053
-
-
Nimrod, G.1
Szilagyi, A.2
Leslie, C.3
Ben-Tal, N.4
-
79
-
-
0033546005
-
-
T. Schwartz, M. A. Rould, K. Lowenhaupt, A. Herbert and A. Rich, Science, 1999, 284, 1841-1845.
-
(1999)
Science
, vol.284
, pp. 1841-1845
-
-
Schwartz, T.1
Rould, M.A.2
Lowenhaupt, K.3
Herbert, A.4
Rich, A.5
-
81
-
-
0028239626
-
-
V. K. Misra, J. L. Hecht, K. A. Sharp, R. A. Friedman and B. Honig, J. Mol. Biol., 1994, 238, 164-280.
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 164-280
-
-
Misra, V.K.1
Hecht, J.L.2
Sharp, K.A.3
Friedman, R.A.4
Honig, B.5
-
82
-
-
0028246710
-
-
V. K. Misra, K. A. Sharp, R. A. Friedman and B. Honig, J. Mol. Biol., 1994, 238, 245-263.
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 245-263
-
-
Misra, V.K.1
Sharp, K.A.2
Friedman, R.A.3
Honig, B.4
-
83
-
-
77953431662
-
-
eds. R. M. Stroud and J. Finer-Moore, J. Biomolecular Sciences, Royal Society of Chemistry, London, UK
-
M. Kato, S. Braun-Sand and A. Warshel, in Computational and Structural Approaches to Drug Discovery, eds. R. M. Stroud and J. Finer-Moore, J. Biomolecular Sciences, Royal Society of Chemistry, London, UK, 2008, pp. 268-291.
-
(2008)
Computational and Structural Approaches to Drug Discovery
, pp. 268-291
-
-
Kato, M.1
Braun-Sand, S.2
Warshel, A.3
-
86
-
-
0017146579
-
-
M. T. J. Record, T. M. Lohman and P. DeHaseth, J. Mol. Biol., 1976, 107, 145-158.
-
(1976)
J. Mol. Biol.
, vol.107
, pp. 145-158
-
-
Record, M.T.J.1
Lohman, T.M.2
Dehaseth, P.3
-
87
-
-
79954618050
-
-
P. L. Privalov, A. L. Dragan and C. Crane-Robinson, Nucleic Acids Res., 2011, 39, 2483-2491.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 2483-2491
-
-
Privalov, P.L.1
Dragan, A.L.2
Crane-Robinson, C.3
-
90
-
-
79955888291
-
-
R. C. Harris, J. H. Bredenberg, A. R. Silalahi, A. H. Boschitsch and M. O. Fenley, Biophys. Chem., 2011, 156, 79-87.
-
(2011)
Biophys. Chem.
, vol.156
, pp. 79-87
-
-
Harris, R.C.1
Bredenberg, J.H.2
Silalahi, A.R.3
Boschitsch, A.H.4
Fenley, M.O.5
-
91
-
-
77955695135
-
-
M. O. Fenley, R. C. Harris, B. Jayaram and A. H. Boschitsch, Biophys. J., 2010, 99, 879-886.
-
(2010)
Biophys. J.
, vol.99
, pp. 879-886
-
-
Fenley, M.O.1
Harris, R.C.2
Jayaram, B.3
Boschitsch, A.H.4
-
92
-
-
0017820499
-
-
M. T. J. Record, C. F. Anderson and T. M. Lohman, Q. Rev. Biophys., 1978, 11, 103-178.
-
(1978)
Q. Rev. Biophys.
, vol.11
, pp. 103-178
-
-
Record, M.T.J.1
Anderson, C.F.2
Lohman, T.M.3
-
93
-
-
59249087478
-
-
N. S. Dosanjh, A. L. West and S. L. J. Michel, Biochemistry, 2009, 48, 527-536.
-
(2009)
Biochemistry
, vol.48
, pp. 527-536
-
-
Dosanjh, N.S.1
West, A.L.2
Michel, S.L.J.3
-
95
-
-
45849099824
-
-
J. H. Bredenberg, C. Russo and M. O. Fenley, Biophys. J., 2008, 94, 4634- 4645.
-
(2008)
Biophys. J.
, vol.94
, pp. 4634-4645
-
-
Bredenberg, J.H.1
Russo, C.2
Fenley, M.O.3
-
96
-
-
44849123749
-
-
J. H. Bredenberg, A. H. Boschitsch and M. O. Fenley, Commun. Comput. Phys., 2008, 3, 1051-1070.
-
(2008)
Commun. Comput. Phys.
, vol.3
, pp. 1051-1070
-
-
Bredenberg, J.H.1
Boschitsch, A.H.2
Fenley, M.O.3
-
97
-
-
79955888291
-
-
R. C. Harris, J. H. Bredenberg, A. R. Silalahi, A. H. Boschitsch and M. O. Fenley, Biophys. Chem., 2011, 156, 79-87.
-
(2011)
Biophys. Chem.
, vol.156
, pp. 79-87
-
-
Harris, R.C.1
Bredenberg, J.H.2
Silalahi, A.R.3
Boschitsch, A.H.4
Fenley, M.O.5
-
101
-
-
0037079572
-
-
B. Jayaram, K. McConnell, S. B. Dixit, A. Das and D. L. Beveridge, J. Comput. Chem., 2002, 23, 1-14.
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 1-14
-
-
Jayaram, B.1
McConnell, K.2
Dixit, S.B.3
Das, A.4
Beveridge, D.L.5
-
102
-
-
0031588927
-
-
F. Fogolari, A. H. Elcock, G. Esposito, P. Viglino, J. M. Briggs and J. A. McCammon, J. Mol. Biol., 1997, 267, 368-381.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 368-381
-
-
Fogolari, F.1
Elcock, A.H.2
Esposito, G.3
Viglino, P.4
Briggs, J.M.5
McCammon, J.A.6
-
103
-
-
33846625611
-
-
Y. Levy, J. N. Onuchic and P. G. Wolynes, J. Am. Chem. Soc., 2007, 129, 738-739.
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 738-739
-
-
Levy, Y.1
Onuchic, J.N.2
Wolynes, P.G.3
-
104
-
-
0033923367
-
-
T. Selzer, S. Albeck and G. Schreiber, Nat. Struct. Biol., 2000, 7, 537-541.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 537-541
-
-
Selzer, T.1
Albeck, S.2
Schreiber, G.3
-
107
-
-
77953311493
-
-
S. M. West, R. Rohs, R. S. Mann and B. Honig, J. Biomol. Struct. Dyn., 2010, 27, 861-866.
-
(2010)
J. Biomol Struct. Dyn.
, vol.27
, pp. 861-866
-
-
West, S.M.1
Rohs, R.2
Mann, R.S.3
Honig, B.4
-
108
-
-
0035913537
-
-
W. Rocchia, E. Alexov and B. Honig, J. Phys. Chem. B, 2001, 105, 6507-6514.
-
(2001)
J. Phys Chem. B
, vol.105
, pp. 6507-6514
-
-
Rocchia, W.1
Alexov, E.2
Honig, B.3
-
109
-
-
84988087911
-
-
M. K. Gilson, K. Sharp and B. Honig, J. Comput. Chem., 1987, 9, 327-335.
-
(1987)
J. Comput. Chem.
, vol.9
, pp. 327-335
-
-
Gilson, M.K.1
Sharp, K.2
Honig, B.3
-
111
-
-
21944448053
-
-
J. L. Hecht, B. Honig, Y.-K. Shin and W. L. Hubbell, J. Phys. Chem., 1995, 99, 7782-7786.
-
(1995)
J. Phys. Chem.
, vol.99
, pp. 7782-7786
-
-
Hecht, J.L.1
Honig, B.2
Shin, Y.-K.3
Hubbell, W.L.4
-
112
-
-
34249792638
-
-
C. R. Escalante, E. Nistal-Villan, L. Shen, A. Garcia-Sastre and A. K. Aggarwal, Mol. Cell, 2007, 26, 703-716.
-
(2007)
Mol. Cell
, vol.26
, pp. 703-716
-
-
Escalante, C.R.1
Nistal-Villan, E.2
Shen, L.3
Garcia-Sastre, A.4
Aggarwal, A.K.5
-
113
-
-
34250017968
-
-
D. Panne, T. Maniatis and S. C. Harrison, Cell, 2007, 129, 1111-1123.
-
(2007)
Cell
, vol.129
, pp. 1111-1123
-
-
Panne, D.1
Maniatis, T.2
Harrison, S.C.3
-
114
-
-
0025780755
-
-
B. F. Luisi, W. X. Xu, Z. Otwinowski, L. P. Freedman, K. R. Yamamoto and P. B. Sigler, Nature, 1991, 352, 497-505.
-
(1991)
Nature
, vol.352
, pp. 497-505
-
-
Luisi, B.F.1
Xu, W.X.2
Otwinowski, Z.3
Freedman, L.P.4
Yamamoto, K.R.5
Sigler, P.B.6
-
115
-
-
65249167505
-
-
S. H. Meijsing, M. A. Pufall, A. Y. So, D. L. Bates, L. Chen and K. R. Yamamoto, Science, 2009, 324, 407-410.
-
(2009)
Science
, vol.324
, pp. 407-410
-
-
Meijsing, S.H.1
Pufall, M.A.2
So, A.Y.3
Bates, D.L.4
Chen, L.5
Yamamoto, K.R.6
-
116
-
-
80053191609
-
-
S. Shazman, G. Elber and Y. Mandel-Gutfreund, Nucleic Acids Res., 2011, 39, 7390-7399.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 7390-7399
-
-
Shazman, S.1
Elber, G.2
Mandel-Gutfreund, Y.3
-
117
-
-
33745645838
-
-
K. E. Max, M. Zeeb, R. Bienert, J. Balbach and U. Heinemann, J. Mol. Biol., 2006, 360, 702-714.
-
(2006)
J. Mol. Biol.
, vol.360
, pp. 702-714
-
-
Max, K.E.1
Zeeb, M.2
Bienert, R.3
Balbach, J.4
Heinemann, U.5
-
118
-
-
79958071005
-
-
S. Glatt, C. Alfieri and C. W. Muller, Curr. Opin. Struct. Biol., 2011, 21, 335-341.
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 335-341
-
-
Glatt, S.1
Alfieri, C.2
Muller, C.W.3
-
119
-
-
77957367439
-
-
R. D. Makde, J. R. England, H. P. Yennawar and S. Tan, Nature, 2010, 467, 562-566.
-
(2010)
Nature
, vol.467
, pp. 562-566
-
-
Makde, R.D.1
England, J.R.2
Yennawar, H.P.3
Tan, S.4
-
120
-
-
45449115390
-
-
M. F. Berger, G. Badis, A. R. Gehrke, S. Talukder, A. A. Philippakis, L. Pena-Castillo, T. M. Alleyne, S. Mnaimneh, O. B. Botvinnik, E. T. Chan, F. Khalid, W. Zhang, D. Newburger, S. A. Jaeger, Q. D. Morris, M. L. Bulyk and T. R. Hughes, Cell, 2008, 133, 1266-1276.
-
(2008)
Cell
, vol.133
, pp. 1266-1276
-
-
Berger, M.F.1
Badis, G.2
Gehrke, A.R.3
Talukder, S.4
Philippakis, A.A.5
Pena-Castillo, L.6
Alleyne, T.M.7
Mnaimneh, S.8
Botvinnik, O.B.9
Chan, E.T.10
Khalid, F.11
Zhang, W.12
Newburger, D.13
Jaeger, S.A.14
Morris, Q.D.15
Bulyk, M.L.16
Hughes, T.R.17
-
121
-
-
45449111373
-
-
M. B. Noyes, R. G. Christensen, A. Wakabayashi, G. D. Stormo, M. H. Brodsky and S. A. Wolfe, Cell, 2008, 133, 1277-1289.
-
(2008)
Cell
, vol.133
, pp. 1277-1289
-
-
Noyes, M.B.1
Christensen, R.G.2
Wakabayashi, A.3
Stormo, G.D.4
Brodsky, M.H.5
Wolfe, S.A.6
-
122
-
-
50849090969
-
-
A. Valouev, D. S. Johnson, A. Sundquist, C. Medina, E. Anton, S. Batzoglou, R. M. Myers and A. Sidow, Nat. Methods, 2008, 5, 829-834.
-
(2008)
Nat. Methods
, vol.5
, pp. 829-834
-
-
Valouev, A.1
Johnson, D.S.2
Sundquist, A.3
Medina, C.4
Anton, E.5
Batzoglou, S.6
Myers, R.M.7
Sidow, A.8
-
123
-
-
79953311672
-
-
A. Ozdemir, K. I. Fisher-Aylor, S. Pepke, M. Samanta, L. Dunipace, K. McCue, L. Zeng, N. Ogawa, B. Wold and A. Stathopoulos, Genome Res., 2011, 21, 566-577.
-
(2011)
Genome Res.
, vol.21
, pp. 566-577
-
-
Ozdemir, A.1
Fisher-Aylor, K.I.2
Pepke, S.3
Samanta, M.4
Dunipace, L.5
McCue, K.6
Zeng, L.7
Ogawa, N.8
Wold, B.9
Stathopoulos, A.10
-
124
-
-
34250159524
-
-
D. S. Johnson, A. Mortazavi, R. M. Myers and B. Wold, Science, 2007, 316, 1497-1502.
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
125
-
-
83255188878
-
-
M. Slattery, T. Riley, P. Liu, N. Abe, P. Gomez-Alcala, I. Dror, T. Zhou, R. Rohs, B. Honig, H. J. Bussemaker and R. S. Mann, Cell, 2011, 147, 1270-1282.
-
(2011)
Cell
, vol.147
, pp. 1270-1282
-
-
Slattery, M.1
Riley, T.2
Liu, P.3
Abe, N.4
Gomez-Alcala, P.5
Dror, I.6
Zhou, T.7
Rohs, R.8
Honig, B.9
Bussemaker, H.J.10
Mann, R.S.11
-
126
-
-
33747500567
-
-
E. Segal, Y. Fondufe-Mittendorf, L. Chen, A. Thastrom, Y. Field, I. K. Moore, J. P. Wang and J. Widom, Nature, 2006, 442, 772-778.
-
(2006)
Nature
, vol.442
, pp. 772-778
-
-
Segal, E.1
Fondufe-Mittendorf, Y.2
Chen, L.3
Thastrom, A.4
Field, Y.5
Moore, I.K.6
Wang, J.P.7
Widom, J.8
-
127
-
-
62649085538
-
-
N. Kaplan, I. K. Moore, Y. Fondufe-Mittendorf, A. J. Gossett, D. Tillo, Y. Field, E. M. LeProust, T. R. Hughes, J. D. Lieb, J. Widom and E. Segal, Nature, 2009, 458, 362-366.
-
(2009)
Nature
, vol.458
, pp. 362-366
-
-
Kaplan, N.1
Moore, I.K.2
Fondufe-Mittendorf, Y.3
Gossett, A.J.4
Tillo, D.5
Field, Y.6
Leproust, E.M.7
Hughes, T.R.8
Lieb, J.D.9
Widom, J.10
Segal, E.11
-
128
-
-
78149237772
-
-
X. Fan, Z. Moqtaderi, Y. Jin, Y. Zhang, X. S. Liu and K. Struhl, Proc. Natl. Acad. Sci. USA, 2010, 107, 17945-17950.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 17945-17950
-
-
Fan, X.1
Moqtaderi, Z.2
Jin, Y.3
Zhang, Y.4
Liu, X.S.5
Struhl, K.6
-
129
-
-
75649102519
-
-
N. Ponts, E. Y. Harris, J. Prudhomme, I. Wick, C. Eckhardt-Ludka, G. R. Hicks, G. Hardiman, S. Lonardi and K. G. Le Roch, Genome Res., 2010, 20, 228-238.
-
(2010)
Genome Res.
, vol.20
, pp. 228-238
-
-
Ponts, N.1
Harris, E.Y.2
Prudhomme, J.3
Wick, I.4
Eckhardt-Ludka, C.5
Hicks, G.R.6
Hardiman, G.7
Lonardi, S.8
Le Roch, K.G.9
-
130
-
-
57149119464
-
-
Y. Field, N. Kaplan, Y. Fondufe-Mittendorf, I. K. Moore, E. Sharon, Y. Lubling, J. Widom and E. Segal, PLoS Comput. Biol., 2008, 4, e1000216.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Field, Y.1
Kaplan, N.2
Fondufe-Mittendorf, Y.3
Moore, I.K.4
Sharon, E.5
Lubling, Y.6
Widom, J.7
Segal, E.8
-
131
-
-
43749099875
-
-
T. N. Mavrich, C. Jiang, I. P. Ioshikhes, X. Li, B. J. Venters, S. J. Zanton, L. P. Tomsho, J. Qi, R. L. Glaser, S. C. Schuster, D. S. Gilmour, I. Albert and B. F. Pugh, Nature, 2008, 453, 358-362.
-
(2008)
Nature
, vol.453
, pp. 358-362
-
-
Mavrich, T.N.1
Jiang, C.2
Ioshikhes, I.P.3
Li, X.4
Venters, B.J.5
Zanton, S.J.6
Tomsho, L.P.7
Qi, J.8
Glaser, R.L.9
Schuster, S.C.10
Gilmour, D.S.11
Albert, I.12
Pugh, B.F.13
-
132
-
-
65249089637
-
-
S. C. Parker, L. Hansen, H. O. Abaan, T. D. Tullius and E. H. Margulies, Science, 2009, 324, 389-392.
-
(2009)
Science
, vol.324
, pp. 389-392
-
-
Parker, S.C.1
Hansen, L.2
Abaan, H.O.3
Tullius, T.D.4
Margulies, E.H.5
-
134
-
-
84858708697
-
-
E. P. Bishop, R. Rohs, S. C. J. Parker, S. M. West, P. Liu, R. S. Mann, B. Honig and T. D. Tullius, ACS Chem. Biol., 2011, 6, 1314-1320.
-
(2011)
ACS Chem. Biol.
, vol.6
, pp. 1314-1320
-
-
Bishop, E.P.1
Rohs, R.2
Parker, S.C.J.3
West, S.M.4
Liu, P.5
Mann, R.S.6
Honig, B.7
Tullius, T.D.8
-
136
-
-
0029011701
-
-
W. D. Cornell, P. Cieplak, C. I. Bayly, I. R. Gould, K. M. Merz, D. M. Ferguson, D. C. Spellmeyer, T. Fox, J. W. Caldwell and P. A. Kollman, J. Am. Chem. Soc., 1995, 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
137
-
-
34547559704
-
-
T. J. Dolinsky, P. Czodrowski, H. Li, J. E. Nielsen, J. H. Jensen, G. Klebe and N. A. Baker, Nucleic Acids Res., 2007, 35, W522-W525.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Dolinsky, T.J.1
Czodrowski, P.2
Li, H.3
Nielsen, J.E.4
Jensen, J.H.5
Klebe, G.6
Baker, N.A.7
-
138
-
-
80051726307
-
-
M. O. Fenley, C. Russo and G. S. Manning, J. Phys. Chem. B, 2011, 115, 9864-9872.
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 9864-9872
-
-
Fenley, M.O.1
Russo, C.2
Manning, G.S.3
|