-
1
-
-
0019132335
-
Are growth rates of Escherichia coli in batch cultures limited by respiration?
-
Andersen, K. B. & von Meyenburg, K. (1980). Are growth rates of Escherichia coli in batch cultures limited by respiration? J Bacteriol 144, 114-123.
-
(1980)
J. Bacteriol.
, vol.144
, pp. 114-123
-
-
Andersen, K.B.1
von Meyenburg, K.2
-
2
-
-
0014353859
-
The energy charge of the adenylate pool as a regulatory parameter. Interaction with feedback modifiers
-
Atkinson, D. E. (1968). The energy charge of the adenylate pool as a regulatory parameter. Interaction with feedback modifiers. Biochemistry 7, 4030-4034.
-
(1968)
Biochemistry
, vol.7
, pp. 4030-4034
-
-
Atkinson, D.E.1
-
3
-
-
0000404096
-
The growth of micro-organisms in relation to their energy supply
-
Bauchop, T. & Elsden, S. R. (1960). The growth of micro-organisms in relation to their energy supply. J Gen Microbiol 23, 457-469.
-
(1960)
J. Gen. Microbiol.
, vol.23
, pp. 457-469
-
-
Bauchop, T.1
Elsden, S.R.2
-
4
-
-
0002546375
-
A simple and reliable method for the determination of cellular RNA content
-
Benthin, S., Nielsen, J. & Villadsen, J. (1991). A simple and reliable method for the determination of cellular RNA content. Biotechnol Tech 5, 39-42.
-
(1991)
Biotechnol. Tech.
, vol.5
, pp. 39-42
-
-
Benthin, S.1
Nielsen, J.2
Villadsen, J.3
-
5
-
-
0032945184
-
The udhA gene of Escherichia coli encodes a soluble pyridine nucleotide transhydrogenase
-
Boonstra, B., French, C. E., Wainwright, I. & Bruce, N. C. (1999). The udhA gene of Escherichia coli encodes a soluble pyridine nucleotide transhydrogenase. J Bacteriol 181 1030-1034.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 1030-1034
-
-
Boonstra, B.1
French, C.E.2
Wainwright, I.3
Bruce, N.C.4
-
6
-
-
0015499043
-
Function of energy-dependent transhydrogenase in Escherichia coli
-
Bragg, P. D., Davies, P. L. & Hou, C. (1972). Function of energy-dependent transhydrogenase in Escherichia coli. Biochem Biophys Res Commun 47, 1248-1255.
-
(1972)
Biochem. Biophys. Res. Commun.
, vol.47
, pp. 1248-1255
-
-
Bragg, P.D.1
Davies, P.L.2
Hou, C.3
-
7
-
-
0035856579
-
Metabolic flux response to phosphoglucose isomerase knock-out in Escherichia coli and impact of overexpression of the soluble transhydrogenase UdhA
-
Canonaco, F., Hess, T. A., Heri, S., Wang, T., Szyperski, T. & Sauer, U. (2001). Metabolic flux response to phosphoglucose isomerase knock-out in Escherichia coli and impact of overexpression of the soluble transhydrogenase UdhA. FEMS Microbiol Lett 204, 247-252.
-
(2001)
FEMS Microbiol. Lett.
, vol.204
, pp. 247-252
-
-
Canonaco, F.1
Hess, T.A.2
Heri, S.3
Wang, T.4
Szyperski, T.5
Sauer, U.6
-
8
-
-
0033107836
-
Classification and sensitivity analysis of a proposed primary metabolic reaction network for Streptomyces lividans
-
Daae, E. B. & Ison, A. P. (1999). Classification and sensitivity analysis of a proposed primary metabolic reaction network for Streptomyces lividans. Metab Eng 1, 153-165.
-
(1999)
Metab. Eng.
, vol.1
, pp. 153-165
-
-
Daae, E.B.1
Ison, A.P.2
-
9
-
-
0003127926
-
Regulation of glucose metabolism in bacterial systems
-
Doelle, H. W., Ewing, K. N. & Hollywood, N. W. (1982). Regulation of glucose metabolism in bacterial systems. Adv Biochem Eng 23, 1-35.
-
(1982)
Adv. Biochem. Eng.
, vol.23
, pp. 1-35
-
-
Doelle, H.W.1
Ewing, K.N.2
Hollywood, N.W.3
-
10
-
-
0017073612
-
The energetics of Escherichia coli during aerobic growth in continuous culture
-
Farmer, I. S. & Jones, C. W. (1976). The energetics of Escherichia coli during aerobic growth in continuous culture. Eur J Biochem 67, 115-122.
-
(1976)
Eur. J. Biochem.
, vol.67
, pp. 115-122
-
-
Farmer, I.S.1
Jones, C.W.2
-
12
-
-
0026832754
-
Acetic acid formation in Escherichia coli fermentation
-
Han, K., Lim, H. C. & Hong, J. (1992). Acetic acid formation in Escherichia coli fermentation. Biotechnol Bioeng 39, 663-671.
-
(1992)
Biotechnol. Bioeng.
, vol.39
, pp. 663-671
-
-
Han, K.1
Lim, H.C.2
Hong, J.3
-
13
-
-
77957227509
-
Chemical analysis of microbial cells
-
Herbert, D., Phipps, P. J. & Strange, R. E. (1971). Chemical analysis of microbial cells. Methods Microbiol 5B, 209-344.
-
(1971)
Methods Microbiol.
, vol.5 B
, pp. 209-344
-
-
Herbert, D.1
Phipps, P.J.2
Strange, R.E.3
-
14
-
-
0035829831
-
On-line estimation of the metabolic burden resulting from synthesis of plasmid-encoded and heat-shock proteins by monitoring respiratory energy generation
-
Hoffmann, F. & Rinas, U. (2001). On-line estimation of the metabolic burden resulting from synthesis of plasmid-encoded and heat-shock proteins by monitoring respiratory energy generation. Biotechnol Bioeng 76, 333-340.
-
(2001)
Biotechnol. Bioeng.
, vol.76
, pp. 333-340
-
-
Hoffmann, F.1
Rinas, U.2
-
15
-
-
0345529074
-
Responses of the central metabolism in Escherichia coli to phosphoglucose isomerase and glucose-6-phosphate dehydrogenase knockouts
-
Hua, Q., Yang, C., Baba, T., Mori, H. & Shimizu, K. (2003). Responses of the central metabolism in Escherichia coli to phosphoglucose isomerase and glucose-6-phosphate dehydrogenase knockouts. J Bacteriol 185, 7053-7067.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 7053-7067
-
-
Hua, Q.1
Yang, C.2
Baba, T.3
Mori, H.4
Shimizu, K.5
-
16
-
-
0004212736
-
Chemical synthesis of the bacterial cell: Polymerization, biosynthesis, fueling reactions, and transport
-
Sunderland, MA: Sinauer Associates
-
Ingraham, J. L., Maaloe, O. & Neidhardt, F. C. (1983). Chemical synthesis of the bacterial cell: polymerization, biosynthesis, fueling reactions, and transport. In Growth of the Bacterial Cell, pp. 87-173. Sunderland, MA: Sinauer Associates.
-
(1983)
Growth of the Bacterial Cell
, pp. 87-173
-
-
Ingraham, J.L.1
Maaloe, O.2
Neidhardt, F.C.3
-
17
-
-
0032895464
-
EcoCyc: Encyclopedia of Escherichia coli genes and metabolism
-
Karp, P. D., Riley, M., Paley, S. M., Pellegrini-Toole, A. & Krummenacker, M. (1999). EcoCyc: encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Res 27, 55-58.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 55-58
-
-
Karp, P.D.1
Riley, M.2
Paley, S.M.3
Pellegrini-Toole, A.4
Krummenacker, M.5
-
18
-
-
0029239706
-
Simple fed-batch technique for high cell density cultivation of Escherichia coli
-
Korz, D. J., Rinas, U., Hellmuth, K., Sanders, E. A. & Deckwer, W.-D. (1995). Simple fed-batch technique for high cell density cultivation of Escherichia coli. J Biotechnol 39, 59-65.
-
(1995)
J. Biotechnol.
, vol.39
, pp. 59-65
-
-
Korz, D.J.1
Rinas, U.2
Hellmuth, K.3
Sanders, E.A.4
Deckwer, W.-D.5
-
19
-
-
0025405421
-
Simple constrained-optimization view of acetate overflow in E. coli
-
Majewski, R. A. & Domach, M. M. (1990). Simple constrained-optimization view of acetate overflow in E. coli. Biotechnol Bioeng 35, 732-738.
-
(1990)
Biotechnol. Bioeng.
, vol.35
, pp. 732-738
-
-
Majewski, R.A.1
Domach, M.M.2
-
22
-
-
1842582933
-
Transcription levels of key metabolic genes are the cause for different glucose utilization pathways in E. coli B (BL21) and E. coli K (JM109)
-
Phue, J.-N. & Shiloach, J. (2004). Transcription levels of key metabolic genes are the cause for different glucose utilization pathways in E. coli B (BL21) and E. coli K (JM109). J Biotechnol 109, 21-30.
-
(2004)
J. Biotechnol.
, vol.109
, pp. 21-30
-
-
Phue, J.-N.1
Shiloach, J.2
-
23
-
-
43049089438
-
The maintenance energy of bacteria in growing cultures
-
Pirt, J. (1965). The maintenance energy of bacteria in growing cultures. Proc R Soc Lond B Biol Sci 163, 224-231.
-
(1965)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.163
, pp. 224-231
-
-
Pirt, J.1
-
24
-
-
0343035686
-
Stoichiometric model of Escherichia coli metabolism: Incorporation of growth-rate dependent biomass composition and mechanistic energy requirements
-
Pramanik, J. & Keasling, J. D. (1997). Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements. Biotechnol Bioeng 56, 398-421.
-
(1997)
Biotechnol. Bioeng.
, vol.56
, pp. 398-421
-
-
Pramanik, J.1
Keasling, J.D.2
-
25
-
-
0021831859
-
Mass culture of Escherichia coli: Medium development for low and high density cultivation of Escherichia coli B/r in minimal and complex media
-
Reiling, H. E., Laurila, H. & Fiechter, A. (1985). Mass culture of Escherichia coli: medium development for low and high density cultivation of Escherichia coli B/r in minimal and complex media. J Biotechnol 2, 191-206.
-
(1985)
J. Biotechnol.
, vol.2
, pp. 191-206
-
-
Reiling, H.E.1
Laurila, H.2
Fiechter, A.3
-
26
-
-
0025826932
-
High cell density cultivation of Escherichia coli at controlled specific growth rate
-
Riesenberg, D., Schulz, V., Knorre, W. A., Pohl, H.-D., Korz, D., Sanders, E. A., Roß, A. & Deckwer, W.-D. (1991). High cell density cultivation of Escherichia coli at controlled specific growth rate. J Biotechnol 20, 17-27.
-
(1991)
J. Biotechnol.
, vol.20
, pp. 17-27
-
-
Riesenberg, D.1
Schulz, V.2
Knorre, W.A.3
Pohl, H.-D.4
Korz, D.5
Sanders, E.A.6
Roß, A.7
Deckwer, W.-D.8
-
27
-
-
0017643367
-
Energy-linked nicotinamide nucleotide transhydrogenases
-
Rydström, J. (1977). Energy-linked nicotinamide nucleotide transhydrogenases. Biochim Biophys Acta 463, 155-184.
-
(1977)
Biochim. Biophys. Acta
, vol.463
, pp. 155-184
-
-
Rydström, J.1
-
28
-
-
0025868196
-
Improved ion-pair high-performance liquid chromatographic method for the quantification of a wide variety of nucleotides and sugar-nucleotides in animal cells
-
Ryll, T. & Wagner, R. (1991). Improved ion-pair high-performance liquid chromatographic method for the quantification of a wide variety of nucleotides and sugar-nucleotides in animal cells. J Chromatogr 570, 77-88.
-
(1991)
J. Chromatogr.
, vol.570
, pp. 77-88
-
-
Ryll, T.1
Wagner, R.2
-
29
-
-
0004136246
-
-
2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory
-
Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
30
-
-
0032838693
-
Quantitative analysis of metabolic fluxes in Escherichia coli, using two-dimensional NMR spectroscopy and complete isotopomer models
-
Schmidt, K., Nielsen, J. & Villadsen, J. (1999). Quantitative analysis of metabolic fluxes in Escherichia coli, using two-dimensional NMR spectroscopy and complete isotopomer models. J Biotechnol 71, 175-189.
-
(1999)
J. Biotechnol.
, vol.71
, pp. 175-189
-
-
Schmidt, K.1
Nielsen, J.2
Villadsen, J.3
-
31
-
-
0029804432
-
Growth rate control of protein and nucleic acid content in Streptomyces coelicolor A3(2) and Escherichia coli B/r
-
Shahab, N., Flett, F., Oliver, S. G. & Butler, P. R. (1996). Growth rate control of protein and nucleic acid content in Streptomyces coelicolor A3(2) and Escherichia coli B/r. Microbiology 142, 1927-1935.
-
(1996)
Microbiology
, vol.142
, pp. 1927-1935
-
-
Shahab, N.1
Flett, F.2
Oliver, S.G.3
Butler, P.R.4
-
32
-
-
0015910716
-
A theoretical study on the amount of ATP required for synthesis of microbial cell material
-
Stouthamer, A. H. (1973). A theoretical study on the amount of ATP required for synthesis of microbial cell material. Antonie van Leeuwenhoek 39, 545-565.
-
(1973)
Antonie Van Leeuwenhoek
, vol.39
, pp. 545-565
-
-
Stouthamer, A.H.1
-
33
-
-
0015921314
-
Utilization of energy for growth and maintenance in continuous and batch cultures of microorganisms. A reevaluation of the method for the determination of ATP production by measuring molar growth yields
-
Stouthamer, A. H. & Bettenhaussen, C. (1973). Utilization of energy for growth and maintenance in continuous and batch cultures of microorganisms. A reevaluation of the method for the determination of ATP production by measuring molar growth yields. Biochim Biophys Acta 301, 53-70.
-
(1973)
Biochim. Biophys. Acta
, vol.301
, pp. 53-70
-
-
Stouthamer, A.H.1
Bettenhaussen, C.2
-
34
-
-
0343471961
-
In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae. I. Experimental observations
-
Theobald, U., Mailinger, W., Baltes, M., Rizzi, M. & Reuss, M. (1997). In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae. I. Experimental observations. Biotechnol Bioeng 55, 305-316.
-
(1997)
Biotechnol. Bioeng.
, vol.55
, pp. 305-316
-
-
Theobald, U.1
Mailinger, W.2
Baltes, M.3
Rizzi, M.4
Reuss, M.5
-
35
-
-
0001985853
-
Flux determination in cellular bioreaction networks: Applications to lysine fermentations
-
Edited by S. K. Sikdar, M. Bier & P. Todd. Boca Raton, FL: CRC Press
-
Vallino, J. J. & Stephanopoulos, G. (1990). Flux determination in cellular bioreaction networks: applications to lysine fermentations. In Frontiers in Bioprocessing, pp. 205-219. Edited by S. K. Sikdar, M. Bier & P. Todd. Boca Raton, FL: CRC Press.
-
(1990)
Frontiers in Bioprocessing
, pp. 205-219
-
-
Vallino, J.J.1
Stephanopoulos, G.2
-
36
-
-
0028973161
-
A metabolic network stoichiometry analysis of microbial growth and product formation
-
van Gulik W. M. & Heijnen, J. J. (1995). A metabolic network stoichiometry analysis of microbial growth and product formation. Biotechnol Bioeng 48, 681-698.
-
(1995)
Biotechnol. Bioeng.
, vol.48
, pp. 681-698
-
-
van Gulik, W.M.1
Heijnen, J.J.2
-
37
-
-
0027723421
-
Metabolic capabilities of Escherichia coli. II. Optimal growth patterns
-
Varma, A. & Palsson, B. O. (1993). Metabolic capabilities of Escherichia coli. II. Optimal growth patterns. J Theor Biol 165, 503-522.
-
(1993)
J. Theor. Biol.
, vol.165
, pp. 503-522
-
-
Varma, A.1
Palsson, B.O.2
-
38
-
-
0028146781
-
Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
-
Varma, A. & Palsson, B. O. (1994). Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. Appl Environ Microbiol 60, 3724-3731.
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 3724-3731
-
-
Varma, A.1
Palsson, B.O.2
-
39
-
-
0037027392
-
Metabolic adaptation of Escherichia coli during temperature-induced recombinant protein synthesis: 2. Redirection of metabolic fluxes
-
Weber, J., Hoffmann, F. & Rinas, U. (2002). Metabolic adaptation of Escherichia coli during temperature-induced recombinant protein synthesis: 2. Redirection of metabolic fluxes. Biotechnol Bioeng 80, 320-330.
-
(2002)
Biotechnol. Bioeng.
, vol.80
, pp. 320-330
-
-
Weber, J.1
Hoffmann, F.2
Rinas, U.3
-
40
-
-
15844406532
-
Metabolic flux analysis of Escherichia coli in glucose-limited continuous culture. II. Dynamic response to famine and feast, activation of the methylglyoxal pathway and oscillatory behaviour
-
Weber, J., Kayser, A. & Rinas, U. (2005). Metabolic flux analysis of Escherichia coli in glucose-limited continuous culture. II. Dynamic response to famine and feast, activation of the methylglyoxal pathway and oscillatory behaviour. Microbiology 151, 707-716.
-
(2005)
Microbiology
, vol.151
, pp. 707-716
-
-
Weber, J.1
Kayser, A.2
Rinas, U.3
-
41
-
-
0025514376
-
A method to estimate the efficiency of oxidative phosphorylation and biomass yield from ATP of a facultative anaerobe in continuous culture
-
Zeng, A. P., Ross, A. & Deckwer, W.-D. (1990). A method to estimate the efficiency of oxidative phosphorylation and biomass yield from ATP of a facultative anaerobe in continuous culture. Biotechnol Bioeng 36, 965-969.
-
(1990)
Biotechnol. Bioeng.
, vol.36
, pp. 965-969
-
-
Zeng, A.P.1
Ross, A.2
Deckwer, W.-D.3
|