Molecular control of sucrose utilization in Escherichia coli W, an efficient sucrose-utilizing strain

Applied and Environmental Microbiology

Volumn 79, Issue 2, 2013, Pages 478-487

  Sabri, Suriana ^a   Nielsen, Lars K ^a   Vickers, Claudia E ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON AVAILABILITY; CARBON SOURCE; COMPLEMENTATION; DE-REPRESSION; E. COLI; FRUCTOKINASE; INDUSTRIAL FERMENTATION; INDUSTRIAL STRAIN; KNOCKOUT MUTANT; MICROBIAL FERMENTATION; MOLECULAR CONTROLS; OVER-EXPRESSION; SUCROSE CONCENTRATION; SUCROSE TRANSPORTERS;

CARBON; ESCHERICHIA COLI; FRUCTOSE; GENES; GROWTH RATE; METABOLISM;

SUGAR (SUCROSE);

ESCHERICHIA COLI PROTEIN; SUCROSE;

CARBOHYDRATE; CARBON; CATABOLISM; CELL ORGANELLE; COLIFORM BACTERIUM; FERMENTATION; GROWTH RATE; MICROBIAL ACTIVITY; MOLECULAR ANALYSIS; PROTEIN;

ARTICLE; ESCHERICHIA COLI; GENE DELETION; GENE EXPRESSION REGULATION; GENETIC COMPLEMENTATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM;

ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE DELETION; GENE EXPRESSION REGULATION, BACTERIAL; GENETIC COMPLEMENTATION TEST; METABOLIC NETWORKS AND PATHWAYS; SUCROSE;

ESCHERICHIA COLI;

EID: 84871871018     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02544-12     Document Type: Article

References (47)

1. Choi J, Lee SY. 1999. Factors affecting the economics of polyhydroxyalkanoate production by bacterial fermentation. Appl. Microbiol. Biotechnol. 51:13-21.
2. Cooney CL. 1983. Strategies for optimizing microbial growth and product formation. Found. Biochem. Eng. 207:179-198.
3. Bevan MW, Franssen MCR. 2006. Investing in green and white biotech. Nat. Biotechnol. 24:765-767.
4. Koutinas AA, Wang R, Webb C. 2004. Evaluation of wheat as generic feedstock for chemical production. Ind. Crop Prod. 20:75-88.
5. Renouf MA, Wegener MK, Nielsen LK. 2008. An environmental life cycle assessment comparing Australian sugarcane with US corn andUKsugar beet as producers of sugars for fermentation. Biomass Bioenerg. 32:1144-1155.
6. Archer C, Kim J, Jeong H, Park JH, Vickers CE, Lee SY, Nielsen LK. 2011. The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli. BMC Genomics 12:9. doi:10.1186/1471-2164-12-9.
7. Fulton L, Howes T, Hardy J. 2004. Biofuels for transport: an international perspective. International Energy Agency. OECD Publications, Paris, France.
8. Treviño-Quintanilla LG, Escalante A, Caro AD, Martínez A, González R, Puente JL, Bolívar F, Gosset G. 2007. The phosphotransferase systemdependent sucrose utilization regulon in enteropathogenic Escherichia coli strains is located in a variable chromosomal region containing iap sequences. J. Mol. Microbiol. Biotechnol. 13:117-125.
9. Tsunekawa H, Azuma S, Okabe M, Okamoto R, Aiba S. 1992. Acquisition of a sucrose utilization system in Escherichia coli K-12 derivatives and its application to industry. Appl. Environ. Microbiol. 58:2081-2088.
10. Bockmann J, Heuel H, Lengeler JW. 1992. Characterization of a chromosomally encoded, non-PTS metabolic pathway for sucrose utilization in Escherichia coli EC3132. Mol. Gen. Genet. 235:22-32.
11. Jahreis K, Bentler L, Bockmann J, Hans S, Meyer A, Siepelmeyer J, Lengeler JW. 2002. Adaptation of sucrose metabolism in the Escherichia coli wild-type strain EC3132. J. Bacteriol. 184:5307-5316.
12. Gleiser IE, Bauer S. 1981. Growth of E. coli W to high cell concentration by oxygen level linked control of carbon source concentration. Biotechnol. Bioeng. 23:1015-1021.
13. Saier MH, Jr, Reizer J. 1992. Proposed uniform nomenclature for the proteins and protein domains of the bacterial phosphoenolpyruvate:sugar phosphotransferase system. J. Bacteriol. 174:1433-1438.
14. Schmid K, Ebner R, Altenbuchner J, Schmitt R, Lengeler JW. 1988. Plasmid-mediated sucrose metabolism in Escherichia coli K12: mapping of the scr genes of pUR400. Mol. Microbiol. 2:1-8.
15. Aulkemeyer P, Ebner R, Heilenmann G, Jahreis K, Schmid K, Wrieden S, Lengeler JW. 1991. Molecular analysis of two fructokinases involved in sucrose metabolism of enteric bacteria. Mol. Microbiol. 5:2913-2922.
16. Doroshenko VG, Livshits VA. 2004. Structure and mode of transposition of Tn2555 carrying sucrose utilization genes. FEMS Microbiol. Lett. 233: 353-359.
17. Hochhut B, Jahreis K, Lengeler JW, Schmid K. 1997. CTnscr94, a conjugative transposon found in enterobacteria. J. Bacteriol. 179:2097-2102.
18. Fricke WF, Wright MS, Lindell AH, Harkins DM, Baker-Austin C, Ravel J, Stepanauskas R. 2008. Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. J. Bacteriol. 190:6779-6794.
19. Iguchi A, Thomson NR, Ogura Y, Saunders D, Ooka T, Henderson IR, Harris D, Asadulghani M, Kurokawa K, Dean P, Kenny B, Quail MA, Thurston S, Dougan G, Hayashi T, Parkhill J, Frankel G. 2009. Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. J. Bacteriol. 191:347-354.
20. Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, Diard M, Dossat C, Karoui ME, Frapy E, Garry L, Ghigo JM, Gilles AM, Johnson J, Le Bouguénec C, Lescat M, Mangenot S, Martinez-Jéhanne V, Matic I, Nassif X, Oztas S, Petit MA, Pichon C, Rouy Z, Ruf CS, Schneider D, Tourret J, Vacherie B, Vallenet D, Médigue C, Rocha EPC, Denamur E. 2009. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet. 5:e1000344. doi:10.1371/journal. pgen.1000344.
21. Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U. S. A. 97:6640-6645.
22. Cherepanov PP, Wackernagel W. 1995. Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of FLP-catalyzed excision of the antibiotic-resistance determinant. Gene 158:9-14.
23. Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
24. Bruschi M, Boyes SJ, Sugiarto H, Nielsen LK, Vickers CE. 2012. A transferable sucrose utilization approach for non-sucrose-utilizing Escherichia coli strains. Biotechnol. Adv. 30:1001-1010.
25. Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
26. Arifin Y, Sabri S, Sugiarto H, Krömer JO, Vickers CE, Nielsen LK. 2010. Deletion of cscR in Escherichia coli W improves growth and poly-3- hydroxybutyrate (PHB) production from sucrose in fed batch culture. J. Biotechnol. 156:275-278.
27. Bruinenberg PM, Van Dijken JP, Scheffers WA. 1983. An enzymic analysis of NADPH production and consumption in Candida utilis. J. Gen. Microbiol. 129:965-971.
28. Schmid K, Schupfner M, Schmitt R. 1982. Plasmid-mediated uptake and metabolism of sucrose by Escherichia coli K-12. J. Bacteriol. 151:68-76.
29. + derivatives of Escherichia coli K12. J. Gen. Microbiol. 134:1635-1644.
30. Pao SS, Paulsen IT, Saier MH. 1998. Major facilitator superfamily. Microbiol. Mol. Biol. Rev. 62:1-34.
31. Dodyk F, Rothstein A. 1964. Factors influencing the appearance of invertase in Saccharomyces cerevisiae. Arch. Biochem. Biophys. 104:478-486.
32. Koschwanez JH, Foster KR, Murray AW. 2011. Sucrose utilization in budding yeast as a model for the origin of undifferentiated multicellularity. PLoS Biol. 9:e1001122. doi:10.1371/journal.pbio.1001122.
33. Lee J, Choi S, Park J, Vickers C, Nielsen L, Lee S. 2010. Development of sucrose-utilizing Escherichia coli K-12 strain by cloning β-fructofuranosidases and its application for L-threonine production. Appl. Microbiol. Biotechnol. 88:905-913.
34. Jahreis K, Lengeler JW. 1993. Molecular analysis of two ScrR repressors and of a ScrR-FruR hybrid repressor for sucrose and D-fructose specific regulons from enteric bacteria. Mol. Microbiol. 9:195-209.
35. Lim HN, Lee Y, Hussein R. 2011. Fundamental relationship between operon organization and gene expression. Proc. Natl. Acad. Sci. U. S. A. 108:10626-10631.
36. Kornberg LH. 2002. If at first you don't succeed. Fructose utilization by Escherichia coli. Adv. Enzyme Regul. 42:349-360.
37. Sebastian J, Asensio C. 1972. Purification and properties of the mannokinase from Escherichia coli. Arch. Biochem. Biophys. 151:227-233.
38. Wang J, Gilles ED, Lengeler JW, Jahreis K. 2001. Modeling of inducer exclusion and catabolite repression based on a PTS-dependent sucrose and non-PTS-dependent glycerol transport systems in Escherichia coli K-12 and its experimental verification. J. Biotechnol. 92:133-158.
39. Postma PW, Lengeler JW, Jacobson GR. 1993. Phosphoenolpyruvate: carbohydrate phosphotransferase systems of bacteria. Microbiol. Mol. Biol. Rev. 57:543-594.
40. Shukla VB, Zhou S, Yomano LP, Shanmugam KT, Preston JF, Ingram LO. 2004. Production of d(-)-lactate from sucrose and molasses. Biotechnol. Lett. 26:689-693.
41. Sahin-Tóth M, Lengyel Z, Tsunekawa H. 1999. Cloning, sequencing, and expression of cscA invertase from Escherichia coli B-62. Can. J. Microbiol. 45:418-422.
42. Scholle RR, Coyne VE, Maharaj R, Robb FT, Woods DR. 1987. Expression and regulation of a Vibrio alginolyticus sucrose utilization system cloned in Escherichia coli. J. Bacteriol. 169:2685-2690.
43. Saier MH, Ramseier TM. 1996. The catabolite repressor/activator (Cra) protein of enteric bacteria. J. Bacteriol. 178:3411-3417.
44. Charbit A, Reizer J, Saier MH. 1996. Function of the duplicated IIB domain and oligomeric structure of the fructose permease of Escherichia coli. J. Biol. Chem. 271:9997-10003.
45. Romano J, Saier MH. 1992. Evolution of the bacterial phosphoenolpyruvate: sugar phosphatase system. I. Physiologic and organismic considerations, p 171-204. In Mortlock RP (ed), The evolution of metabolic function. CRC Press, Boca Raton, FL.
46. Saier MH, Ye JJ, Klinke S, Nino E. 1996. Identification of an anaerobically induced phosphoenolpyruvate-dependent fructose-specific phosphotransferase system and evidence for the Embden-Meyerhof glycolytic pathway in the heterofermentative bacterium Lactobacillus brevis. J. Bacteriol. 178:314-316.
47. Ramseier TM, Bledig S, Michotey V, Feghali R, Jr, Saier MH. 1995. The global regulatory protein FruR modulates the direction of carbon flow in Escherichia coli. Mol. Microbiol. 16:1157-1169.