메뉴 건너뛰기




Volumn 10, Issue 12, 2014, Pages

A Massively Parallel Pipeline to Clone DNA Variants and Examine Molecular Phenotypes of Human Disease Mutations

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GREEN FLUORESCENT PROTEIN; MLH1 PROTEIN, HUMAN; NUCLEAR PROTEIN; SIGNAL TRANSDUCING ADAPTOR PROTEIN;

EID: 84919684016     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004819     Document Type: Article
Times cited : (37)

References (65)
  • 2
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1,092 human genomes
    • Consortium TGP, (2012) An integrated map of genetic variation from 1,092 human genomes. Nature 491: 56–65.
    • (2012) Nature , vol.491 , pp. 56-65
    • Consortium, T.G.P.1
  • 3
    • 84872143942 scopus 로고    scopus 로고
    • Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants
    • Fu W, O'Connor TD, Jun G, Kang HM, Abecasis G, et al. (2013) Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants. Nature 493: 216–220.
    • (2013) Nature , vol.493 , pp. 216-220
    • Fu, W.1    O'Connor, T.D.2    Jun, G.3    Kang, H.M.4    Abecasis, G.5
  • 4
    • 67249117049 scopus 로고    scopus 로고
    • Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
    • Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, et al. (2009) Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc Natl Acad Sci U S A 106: 9362–9367.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 9362-9367
    • Hindorff, L.A.1    Sethupathy, P.2    Junkins, H.A.3    Ramos, E.M.4    Mehta, J.P.5
  • 5
    • 79952674000 scopus 로고    scopus 로고
    • Interactome networks and human disease
    • Vidal M, Cusick ME, Barabasi AL, (2011) Interactome networks and human disease. Cell 144: 986–998.
    • (2011) Cell , vol.144 , pp. 986-998
    • Vidal, M.1    Cusick, M.E.2    Barabasi, A.L.3
  • 7
    • 84863010950 scopus 로고    scopus 로고
    • Three-dimensional reconstruction of protein networks provides insight into human genetic disease
    • Wang X, Wei X, Thijssen B, Das J, Lipkin SM, et al. (2012) Three-dimensional reconstruction of protein networks provides insight into human genetic disease. Nat Biotechnol 30: 159–164.
    • (2012) Nat Biotechnol , vol.30 , pp. 159-164
    • Wang, X.1    Wei, X.2    Thijssen, B.3    Das, J.4    Lipkin, S.M.5
  • 9
    • 53349117774 scopus 로고    scopus 로고
    • High-quality binary protein interaction map of the yeast interactome network
    • Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, et al. (2008) High-quality binary protein interaction map of the yeast interactome network. Science 322: 104–110.
    • (2008) Science , vol.322 , pp. 104-110
    • Yu, H.1    Braun, P.2    Yildirim, M.A.3    Lemmens, I.4    Venkatesan, K.5
  • 10
    • 58149242456 scopus 로고    scopus 로고
    • An experimentally derived confidence score for binary protein-protein interactions
    • Braun P, Tasan M, Dreze M, Barrios-Rodiles M, Lemmens I, et al. (2009) An experimentally derived confidence score for binary protein-protein interactions. Nat Methods 6: 91–97.
    • (2009) Nat Methods , vol.6 , pp. 91-97
    • Braun, P.1    Tasan, M.2    Dreze, M.3    Barrios-Rodiles, M.4    Lemmens, I.5
  • 11
    • 27144530248 scopus 로고    scopus 로고
    • Towards a proteome-scale map of the human protein-protein interaction network
    • Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, et al. (2005) Towards a proteome-scale map of the human protein-protein interaction network. Nature 437: 1173–1178.
    • (2005) Nature , vol.437 , pp. 1173-1178
    • Rual, J.F.1    Venkatesan, K.2    Hao, T.3    Hirozane-Kishikawa, T.4    Dricot, A.5
  • 13
    • 79957874673 scopus 로고    scopus 로고
    • Next-generation sequencing to generate interactome datasets
    • Yu H, Tardivo L, Tam S, Weiner E, Gebreab F, et al. (2011) Next-generation sequencing to generate interactome datasets. Nat Methods 8: 478–480.
    • (2011) Nat Methods , vol.8 , pp. 478-480
    • Yu, H.1    Tardivo, L.2    Tam, S.3    Weiner, E.4    Gebreab, F.5
  • 14
    • 84919648749 scopus 로고    scopus 로고
    • HI2012 (2012) http://interactomedfciharvardedu/indexphp?page=login&lg=/H_sapiens/indexphp?page=newrelease.
  • 15
    • 26444593986 scopus 로고    scopus 로고
    • A novel high-throughput (HTP) cloning strategy for site-directed designed chimeragenesis and mutation using the Gateway cloning system
    • Suzuki Y, Kagawa N, Fujino T, Sumiya T, Andoh T, et al. (2005) A novel high-throughput (HTP) cloning strategy for site-directed designed chimeragenesis and mutation using the Gateway cloning system. Nucleic Acids Res 33: e109.
    • (2005) Nucleic Acids Res , vol.33 , pp. 109
    • Suzuki, Y.1    Kagawa, N.2    Fujino, T.3    Sumiya, T.4    Andoh, T.5
  • 16
    • 46249129056 scopus 로고    scopus 로고
    • Isoform discovery by targeted cloning, ‘deep-well’ pooling and parallel sequencing
    • Salehi-Ashtiani K, Yang X, Derti A, Tian W, Hao T, et al. (2008) Isoform discovery by targeted cloning, ‘deep-well’ pooling and parallel sequencing. Nat Methods 5: 597–600.
    • (2008) Nat Methods , vol.5 , pp. 597-600
    • Salehi-Ashtiani, K.1    Yang, X.2    Derti, A.3    Tian, W.4    Hao, T.5
  • 17
    • 84898815256 scopus 로고    scopus 로고
    • Elucidating common structural features of human pathogenic variations using large-scale atomic-resolution protein networks
    • Das J, Lee HR, Sagar A, Fragoza R, Liang J, et al. (2014) Elucidating common structural features of human pathogenic variations using large-scale atomic-resolution protein networks. Hum Mutat 35: 585–593.
    • (2014) Hum Mutat , vol.35 , pp. 585-593
    • Das, J.1    Lee, H.R.2    Sagar, A.3    Fragoza, R.4    Liang, J.5
  • 18
    • 84885639776 scopus 로고    scopus 로고
    • Integrative annotation of variants from 1092 humans: application to cancer genomics
    • Khurana E, Fu Y, Colonna V, Mu XJ, Kang HM, et al. (2013) Integrative annotation of variants from 1092 humans: application to cancer genomics. Science 342: 1235587.
    • (2013) Science , vol.342 , pp. 1235587
    • Khurana, E.1    Fu, Y.2    Colonna, V.3    Mu, X.J.4    Kang, H.M.5
  • 19
    • 80053458464 scopus 로고    scopus 로고
    • Minor variant detection in amplicons using 454 massive parallel pyrosequencing: experiences and considerations for successful applications
    • Vandenbroucke I, Van Marck H, Verhasselt P, Thys K, Mostmans W, et al. (2011) Minor variant detection in amplicons using 454 massive parallel pyrosequencing: experiences and considerations for successful applications. Biotechniques 51: 167–177.
    • (2011) Biotechniques , vol.51 , pp. 167-177
    • Vandenbroucke, I.1    Van Marck, H.2    Verhasselt, P.3    Thys, K.4    Mostmans, W.5
  • 20
    • 78651330430 scopus 로고    scopus 로고
    • COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer
    • Forbes SA, Bindal N, Bamford S, Cole C, Kok CY, et al. (2011) COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer. Nucleic Acids Res 39: D945–950.
    • (2011) Nucleic Acids Res , vol.39 , pp. D945-950
    • Forbes, S.A.1    Bindal, N.2    Bamford, S.3    Cole, C.4    Kok, C.Y.5
  • 21
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, et al. (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20: 1297–1303.
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3    Sivachenko, A.4    Cibulskis, K.5
  • 22
    • 10644258336 scopus 로고    scopus 로고
    • Constitutional aneuploidy and cancer predisposition caused by biallelic mutations in BUB1B
    • Hanks S, Coleman K, Reid S, Plaja A, Firth H, et al. (2004) Constitutional aneuploidy and cancer predisposition caused by biallelic mutations in BUB1B. Nat Genet 36: 1159–1161.
    • (2004) Nat Genet , vol.36 , pp. 1159-1161
    • Hanks, S.1    Coleman, K.2    Reid, S.3    Plaja, A.4    Firth, H.5
  • 23
    • 77953770988 scopus 로고    scopus 로고
    • Molecular causes for BUBR1 dysfunction in the human cancer predisposition syndrome mosaic variegated aneuploidy
    • Suijkerbuijk SJ, van Osch MH, Bos FL, Hanks S, Rahman N, et al. (2010) Molecular causes for BUBR1 dysfunction in the human cancer predisposition syndrome mosaic variegated aneuploidy. Cancer Res 70: 4891–4900.
    • (2010) Cancer Res , vol.70 , pp. 4891-4900
    • Suijkerbuijk, S.J.1    van Osch, M.H.2    Bos, F.L.3    Hanks, S.4    Rahman, N.5
  • 24
    • 32444444090 scopus 로고    scopus 로고
    • Monoallelic BUB1B mutations and defective mitotic-spindle checkpoint in seven families with premature chromatid separation (PCS) syndrome
    • Matsuura S, Matsumoto Y, Morishima K, Izumi H, Matsumoto H, et al. (2006) Monoallelic BUB1B mutations and defective mitotic-spindle checkpoint in seven families with premature chromatid separation (PCS) syndrome. Am J Med Genet A 140: 358–367.
    • (2006) Am J Med Genet A , vol.140 , pp. 358-367
    • Matsuura, S.1    Matsumoto, Y.2    Morishima, K.3    Izumi, H.4    Matsumoto, H.5
  • 26
    • 7844251203 scopus 로고    scopus 로고
    • Mutations in DPC4 (SMAD4) cause juvenile polyposis syndrome, but only account for a minority of cases
    • Houlston R, Bevan S, Williams A, Young J, Dunlop M, et al. (1998) Mutations in DPC4 (SMAD4) cause juvenile polyposis syndrome, but only account for a minority of cases. Hum Mol Genet 7: 1907–1912.
    • (1998) Hum Mol Genet , vol.7 , pp. 1907-1912
    • Houlston, R.1    Bevan, S.2    Williams, A.3    Young, J.4    Dunlop, M.5
  • 27
    • 47549090432 scopus 로고    scopus 로고
    • TGFbeta in Cancer
    • Massague J, (2008) TGFbeta in Cancer. Cell 134: 215–230.
    • (2008) Cell , vol.134 , pp. 215-230
    • Massague, J.1
  • 28
    • 81255136932 scopus 로고    scopus 로고
    • Molecular genetic characterization of SMAD signaling molecules in pulmonary arterial hypertension
    • Nasim MT, Ogo T, Ahmed M, Randall R, Chowdhury HM, et al. (2011) Molecular genetic characterization of SMAD signaling molecules in pulmonary arterial hypertension. Hum Mutat 32: 1385–1389.
    • (2011) Hum Mutat , vol.32 , pp. 1385-1389
    • Nasim, M.T.1    Ogo, T.2    Ahmed, M.3    Randall, R.4    Chowdhury, H.M.5
  • 29
    • 84919648748 scopus 로고    scopus 로고
    • The molecular genetics and cellular mechanisms underlying pulmonary arterial hypertension
    • Machado RD, (2012) The molecular genetics and cellular mechanisms underlying pulmonary arterial hypertension. Scientifica (Cairo) 2012: 106576.
    • (2012) Scientifica (Cairo) , vol.2012 , pp. 106576
    • Machado, R.D.1
  • 30
    • 80052411919 scopus 로고    scopus 로고
    • Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM
    • Tuncbag N, Gursoy A, Nussinov R, Keskin O, (2011) Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM. Nat Protoc 6: 1341–1354.
    • (2011) Nat Protoc , vol.6 , pp. 1341-1354
    • Tuncbag, N.1    Gursoy, A.2    Nussinov, R.3    Keskin, O.4
  • 31
    • 84867881743 scopus 로고    scopus 로고
    • Structure-based prediction of protein-protein interactions on a genome-wide scale
    • Zhang QC, Petrey D, Deng L, Qiang L, Shi Y, et al. (2012) Structure-based prediction of protein-protein interactions on a genome-wide scale. Nature 490: 556–560.
    • (2012) Nature , vol.490 , pp. 556-560
    • Zhang, Q.C.1    Petrey, D.2    Deng, L.3    Qiang, L.4    Shi, Y.5
  • 32
    • 84878858665 scopus 로고    scopus 로고
    • INstruct: a database of high-quality 3D structurally resolved protein interactome networks
    • Meyer MJ, Das J, Wang X, Yu H, (2013) INstruct: a database of high-quality 3D structurally resolved protein interactome networks. Bioinformatics 29: 1577–1579.
    • (2013) Bioinformatics , vol.29 , pp. 1577-1579
    • Meyer, M.J.1    Das, J.2    Wang, X.3    Yu, H.4
  • 33
    • 84871967106 scopus 로고    scopus 로고
    • Interactome3D: adding structural details to protein networks
    • Mosca R, Ceol A, Aloy P, (2013) Interactome3D: adding structural details to protein networks. Nat Methods 10: 47–53.
    • (2013) Nat Methods , vol.10 , pp. 47-53
    • Mosca, R.1    Ceol, A.2    Aloy, P.3
  • 34
    • 84889032390 scopus 로고    scopus 로고
    • Exploring mechanisms of human disease through structurally resolved protein interactome networks
    • Das J, Fragoza R, Lee HR, Cordero NA, Guo Y, et al. (2014) Exploring mechanisms of human disease through structurally resolved protein interactome networks. Mol Biosyst 10: 9–17.
    • (2014) Mol Biosyst , vol.10 , pp. 9-17
    • Das, J.1    Fragoza, R.2    Lee, H.R.3    Cordero, N.A.4    Guo, Y.5
  • 35
    • 0030882381 scopus 로고    scopus 로고
    • Mutations predisposing to hereditary nonpolyposis colorectal cancer: database and results of a collaborative study. The International Collaborative Group on Hereditary Nonpolyposis Colorectal Cancer
    • Peltomaki P, Vasen HF, (1997) Mutations predisposing to hereditary nonpolyposis colorectal cancer: database and results of a collaborative study. The International Collaborative Group on Hereditary Nonpolyposis Colorectal Cancer. Gastroenterology 113: 1146–1158.
    • (1997) Gastroenterology , vol.113 , pp. 1146-1158
    • Peltomaki, P.1    Vasen, H.F.2
  • 36
    • 0038407386 scopus 로고    scopus 로고
    • A yeast two-hybrid assay provides a simple way to evaluate the vast majority of hMLH1 germ-line mutations
    • Kondo E, Suzuki H, Horii A, Fukushige S, (2003) A yeast two-hybrid assay provides a simple way to evaluate the vast majority of hMLH1 germ-line mutations. Cancer Res 63: 3302–3308.
    • (2003) Cancer Res , vol.63 , pp. 3302-3308
    • Kondo, E.1    Suzuki, H.2    Horii, A.3    Fukushige, S.4
  • 37
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, et al. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1: 376–386.
    • (2002) Mol Cell Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5
  • 38
    • 34247396011 scopus 로고    scopus 로고
    • A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)
    • Ong SE, Mann M, (2006) A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nat Protoc 1: 2650–2660.
    • (2006) Nat Protoc , vol.1 , pp. 2650-2660
    • Ong, S.E.1    Mann, M.2
  • 39
    • 77955476243 scopus 로고    scopus 로고
    • DNA damage signaling recruits the Rtt107-Slx4 scaffolds via Dpb11 to mediate replication stress response
    • Ohouo PY, Bastos de Oliveira FM, Almeida BS, Smolka MB, (2010) DNA damage signaling recruits the Rtt107-Slx4 scaffolds via Dpb11 to mediate replication stress response. Mol Cell 39: 300–306.
    • (2010) Mol Cell , vol.39 , pp. 300-306
    • Ohouo, P.Y.1    Bastos de Oliveira, F.M.2    Almeida, B.S.3    Smolka, M.B.4
  • 40
    • 0034717283 scopus 로고    scopus 로고
    • Identification of a second MutL DNA mismatch repair complex (hPMS1 and hMLH1) in human epithelial cells
    • Leung WK, Kim JJ, Wu L, Sepulveda JL, Sepulveda AR, (2000) Identification of a second MutL DNA mismatch repair complex (hPMS1 and hMLH1) in human epithelial cells. J Biol Chem 275: 15728–15732.
    • (2000) J Biol Chem , vol.275 , pp. 15728-15732
    • Leung, W.K.1    Kim, J.J.2    Wu, L.3    Sepulveda, J.L.4    Sepulveda, A.R.5
  • 41
    • 34447318130 scopus 로고    scopus 로고
    • The FANCJ/MutLalpha interaction is required for correction of the cross-link response in FA-J cells
    • Peng M, Litman R, Xie J, Sharma S, Brosh RM, Jret al. (2007) The FANCJ/MutLalpha interaction is required for correction of the cross-link response in FA-J cells. EMBO J 26: 3238–3249.
    • (2007) EMBO J , vol.26 , pp. 3238-3249
    • Peng, M.1    Litman, R.2    Xie, J.3    Sharma, S.4    Brosh, R.M.5
  • 42
    • 33645803596 scopus 로고    scopus 로고
    • Differential effects of Hsc70 and Hsp70 on the intracellular trafficking and functional expression of epithelial sodium channels
    • Goldfarb SB, Kashlan OB, Watkins JN, Suaud L, Yan W, et al. (2006) Differential effects of Hsc70 and Hsp70 on the intracellular trafficking and functional expression of epithelial sodium channels. Proc Natl Acad Sci U S A 103: 5817–5822.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 5817-5822
    • Goldfarb, S.B.1    Kashlan, O.B.2    Watkins, J.N.3    Suaud, L.4    Yan, W.5
  • 43
    • 0025126351 scopus 로고
    • Uncoating protein (hsc70) binds a conformationally labile domain of clathrin light chain LCa to stimulate ATP hydrolysis
    • DeLuca-Flaherty C, McKay DB, Parham P, Hill BL, (1990) Uncoating protein (hsc70) binds a conformationally labile domain of clathrin light chain LCa to stimulate ATP hydrolysis. Cell 62: 875–887.
    • (1990) Cell , vol.62 , pp. 875-887
    • DeLuca-Flaherty, C.1    McKay, D.B.2    Parham, P.3    Hill, B.L.4
  • 44
    • 84856822460 scopus 로고    scopus 로고
    • The cellular chaperone hsc70 is specifically recruited to reovirus viral factories independently of its chaperone function
    • Kaufer S, Coffey CM, Parker JS, (2012) The cellular chaperone hsc70 is specifically recruited to reovirus viral factories independently of its chaperone function. J Virol 86: 1079–1089.
    • (2012) J Virol , vol.86 , pp. 1079-1089
    • Kaufer, S.1    Coffey, C.M.2    Parker, J.S.3
  • 46
    • 84875870975 scopus 로고    scopus 로고
    • Activity-enhancing mutations in an E3 ubiquitin ligase identified by high-throughput mutagenesis
    • Starita LM, Pruneda JN, Lo RS, Fowler DM, Kim HJ, et al. (2013) Activity-enhancing mutations in an E3 ubiquitin ligase identified by high-throughput mutagenesis. Proc Natl Acad Sci U S A 110: E1263–1272.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 1263-1272
    • Starita, L.M.1    Pruneda, J.N.2    Lo, R.S.3    Fowler, D.M.4    Kim, H.J.5
  • 47
    • 84867644046 scopus 로고    scopus 로고
    • A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function
    • Araya CL, Fowler DM, Chen W, Muniez I, Kelly JW, et al. (2012) A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function. Proc Natl Acad Sci U S A 109: 16858–16863.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 16858-16863
    • Araya, C.L.1    Fowler, D.M.2    Chen, W.3    Muniez, I.4    Kelly, J.W.5
  • 48
    • 77957963240 scopus 로고    scopus 로고
    • Rapid construction of empirical RNA fitness landscapes
    • Pitt JN, Ferre-D'Amare AR, (2010) Rapid construction of empirical RNA fitness landscapes. Science 330: 376–379.
    • (2010) Science , vol.330 , pp. 376-379
    • Pitt, J.N.1    Ferre-D'Amare, A.R.2
  • 49
    • 80052158097 scopus 로고    scopus 로고
    • The mutational landscape of head and neck squamous cell carcinoma
    • Stransky N, Egloff AM, Tward AD, Kostic AD, Cibulskis K, et al. (2011) The mutational landscape of head and neck squamous cell carcinoma. Science 333: 1157–1160.
    • (2011) Science , vol.333 , pp. 1157-1160
    • Stransky, N.1    Egloff, A.M.2    Tward, A.D.3    Kostic, A.D.4    Cibulskis, K.5
  • 50
    • 84863922124 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of human colon and rectal cancer
    • Atlas TCG, (2012) Comprehensive molecular characterization of human colon and rectal cancer. Nature 487: 330–337.
    • (2012) Nature , vol.487 , pp. 330-337
    • Atlas, T.C.G.1
  • 51
    • 0024403619 scopus 로고
    • High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis
    • Cunningham BC, Wells JA, (1989) High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis. Science 244: 1081–1085.
    • (1989) Science , vol.244 , pp. 1081-1085
    • Cunningham, B.C.1    Wells, J.A.2
  • 52
    • 84857780876 scopus 로고    scopus 로고
    • Evidence for network evolution in an Arabidopsis interactome map
    • Consortium AIM, (2011) Evidence for network evolution in an Arabidopsis interactome map. Science 333: 601–607.
    • (2011) Science , vol.333 , pp. 601-607
    • Consortium, A.I.M.1
  • 53
    • 84878287076 scopus 로고    scopus 로고
    • Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways
    • Das J, Vo TV, Wei X, Mellor JC, Tong V, et al. (2013) Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways. Sci Signal 6: ra38.
    • (2013) Sci Signal , vol.6 , pp. a38
    • Das, J.1    Vo, T.V.2    Wei, X.3    Mellor, J.C.4    Tong, V.5
  • 54
    • 82355190165 scopus 로고    scopus 로고
    • Yeast one-hybrid assays for gene-centered human gene regulatory network mapping
    • Reece-Hoyes JS, Barutcu AR, McCord RP, Jeong JS, Jiang L, et al. (2011) Yeast one-hybrid assays for gene-centered human gene regulatory network mapping. Nat Methods 8: 1050–1052.
    • (2011) Nat Methods , vol.8 , pp. 1050-1052
    • Reece-Hoyes, J.S.1    Barutcu, A.R.2    McCord, R.P.3    Jeong, J.S.4    Jiang, L.5
  • 55
    • 33750882505 scopus 로고    scopus 로고
    • Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
    • Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW, 3rdet al. (2006) Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nat Biotechnol 24: 1429–1435.
    • (2006) Nat Biotechnol , vol.24 , pp. 1429-1435
    • Berger, M.F.1    Philippakis, A.A.2    Qureshi, A.M.3    He, F.S.4    Estep, P.W.5
  • 56
    • 84864122193 scopus 로고    scopus 로고
    • Gel mobility shift assays to detect protein-RNA interactions
    • Yakhnin AV, Yakhnin H, Babitzke P, (2012) Gel mobility shift assays to detect protein-RNA interactions. Methods Mol Biol 905: 201–211.
    • (2012) Methods Mol Biol , vol.905 , pp. 201-211
    • Yakhnin, A.V.1    Yakhnin, H.2    Babitzke, P.3
  • 57
    • 84857148223 scopus 로고    scopus 로고
    • Chemical chaperones assist intracellular folding to buffer mutational variations
    • Bandyopadhyay A, Saxena K, Kasturia N, Dalal V, Bhatt N, et al. (2012) Chemical chaperones assist intracellular folding to buffer mutational variations. Nat Chem Biol 8: 238–245.
    • (2012) Nat Chem Biol , vol.8 , pp. 238-245
    • Bandyopadhyay, A.1    Saxena, K.2    Kasturia, N.3    Dalal, V.4    Bhatt, N.5
  • 58
    • 79960617916 scopus 로고    scopus 로고
    • Structural principles within the human-virus protein-protein interaction network
    • Franzosa EA, Xia Y, (2011) Structural principles within the human-virus protein-protein interaction network. Proc Natl Acad Sci U S A 108: 10538–10543.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 10538-10543
    • Franzosa, E.A.1    Xia, Y.2
  • 59
    • 78651344377 scopus 로고    scopus 로고
    • 3did: identification and classification of domain-based interactions of known three-dimensional structure
    • Stein A, Ceol A, Aloy P, (2011) 3did: identification and classification of domain-based interactions of known three-dimensional structure. Nucleic Acids Res 39: D718–723.
    • (2011) Nucleic Acids Res , vol.39 , pp. D718-723
    • Stein, A.1    Ceol, A.2    Aloy, P.3
  • 60
    • 13844264506 scopus 로고    scopus 로고
    • iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions
    • Finn RD, Marshall M, Bateman A, (2005) iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions. Bioinformatics 21: 410–412.
    • (2005) Bioinformatics , vol.21 , pp. 410-412
    • Finn, R.D.1    Marshall, M.2    Bateman, A.3
  • 61
    • 79960987021 scopus 로고    scopus 로고
    • A public genome-scale lentiviral expression library of human ORFs
    • Yang X, Boehm JS, Salehi-Ashtiani K, Hao T, Shen Y, et al. (2011) A public genome-scale lentiviral expression library of human ORFs. Nat Methods 8: 659–661.
    • (2011) Nat Methods , vol.8 , pp. 659-661
    • Yang, X.1    Boehm, J.S.2    Salehi-Ashtiani, K.3    Hao, T.4    Shen, Y.5
  • 62
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754–1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 64
    • 0034854563 scopus 로고    scopus 로고
    • High-throughput yeast two-hybrid assays for large-scale protein interaction mapping
    • Walhout AJ, Vidal M, (2001) High-throughput yeast two-hybrid assays for large-scale protein interaction mapping. Methods 24: 297–306.
    • (2001) Methods , vol.24 , pp. 297-306
    • Walhout, A.J.1    Vidal, M.2
  • 65
    • 77954237882 scopus 로고    scopus 로고
    • Network organization of the human autophagy system
    • Behrends C, Sowa ME, Gygi SP, Harper JW, (2010) Network organization of the human autophagy system. Nature 466: 68–76.
    • (2010) Nature , vol.466 , pp. 68-76
    • Behrends, C.1    Sowa, M.E.2    Gygi, S.P.3    Harper, J.W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.