-
1
-
-
77953446523
-
The Human Gene Mutation Database: 2008 update
-
Stenson PD, Mort M, Ball EV, Howells K, Phillips AD, et al. (2009) The Human Gene Mutation Database: 2008 update. Genome Med 1: 13.
-
(2009)
Genome Med
, vol.1
, pp. 13
-
-
Stenson, P.D.1
Mort, M.2
Ball, E.V.3
Howells, K.4
Phillips, A.D.5
-
2
-
-
84975795680
-
An integrated map of genetic variation from 1,092 human genomes
-
Consortium TGP, (2012) An integrated map of genetic variation from 1,092 human genomes. Nature 491: 56–65.
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
Consortium, T.G.P.1
-
3
-
-
84872143942
-
Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants
-
Fu W, O'Connor TD, Jun G, Kang HM, Abecasis G, et al. (2013) Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants. Nature 493: 216–220.
-
(2013)
Nature
, vol.493
, pp. 216-220
-
-
Fu, W.1
O'Connor, T.D.2
Jun, G.3
Kang, H.M.4
Abecasis, G.5
-
4
-
-
67249117049
-
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
-
Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, et al. (2009) Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc Natl Acad Sci U S A 106: 9362–9367.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 9362-9367
-
-
Hindorff, L.A.1
Sethupathy, P.2
Junkins, H.A.3
Ramos, E.M.4
Mehta, J.P.5
-
5
-
-
79952674000
-
Interactome networks and human disease
-
Vidal M, Cusick ME, Barabasi AL, (2011) Interactome networks and human disease. Cell 144: 986–998.
-
(2011)
Cell
, vol.144
, pp. 986-998
-
-
Vidal, M.1
Cusick, M.E.2
Barabasi, A.L.3
-
6
-
-
72849142731
-
Edgetic perturbation models of human inherited disorders
-
Zhong Q, Simonis N, Li QR, Charloteaux B, Heuze F, et al. (2009) Edgetic perturbation models of human inherited disorders. Mol Syst Biol 5: 321.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 321
-
-
Zhong, Q.1
Simonis, N.2
Li, Q.R.3
Charloteaux, B.4
Heuze, F.5
-
7
-
-
84863010950
-
Three-dimensional reconstruction of protein networks provides insight into human genetic disease
-
Wang X, Wei X, Thijssen B, Das J, Lipkin SM, et al. (2012) Three-dimensional reconstruction of protein networks provides insight into human genetic disease. Nat Biotechnol 30: 159–164.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 159-164
-
-
Wang, X.1
Wei, X.2
Thijssen, B.3
Das, J.4
Lipkin, S.M.5
-
8
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Res 28: 235–242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
-
9
-
-
53349117774
-
High-quality binary protein interaction map of the yeast interactome network
-
Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, et al. (2008) High-quality binary protein interaction map of the yeast interactome network. Science 322: 104–110.
-
(2008)
Science
, vol.322
, pp. 104-110
-
-
Yu, H.1
Braun, P.2
Yildirim, M.A.3
Lemmens, I.4
Venkatesan, K.5
-
10
-
-
58149242456
-
An experimentally derived confidence score for binary protein-protein interactions
-
Braun P, Tasan M, Dreze M, Barrios-Rodiles M, Lemmens I, et al. (2009) An experimentally derived confidence score for binary protein-protein interactions. Nat Methods 6: 91–97.
-
(2009)
Nat Methods
, vol.6
, pp. 91-97
-
-
Braun, P.1
Tasan, M.2
Dreze, M.3
Barrios-Rodiles, M.4
Lemmens, I.5
-
11
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, et al. (2005) Towards a proteome-scale map of the human protein-protein interaction network. Nature 437: 1173–1178.
-
(2005)
Nature
, vol.437
, pp. 1173-1178
-
-
Rual, J.F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
Dricot, A.5
-
12
-
-
58149305794
-
An empirical framework for binary interactome mapping
-
Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, et al. (2009) An empirical framework for binary interactome mapping. Nat Methods 6: 83–90.
-
(2009)
Nat Methods
, vol.6
, pp. 83-90
-
-
Venkatesan, K.1
Rual, J.F.2
Vazquez, A.3
Stelzl, U.4
Lemmens, I.5
-
13
-
-
79957874673
-
Next-generation sequencing to generate interactome datasets
-
Yu H, Tardivo L, Tam S, Weiner E, Gebreab F, et al. (2011) Next-generation sequencing to generate interactome datasets. Nat Methods 8: 478–480.
-
(2011)
Nat Methods
, vol.8
, pp. 478-480
-
-
Yu, H.1
Tardivo, L.2
Tam, S.3
Weiner, E.4
Gebreab, F.5
-
14
-
-
84919648749
-
-
HI2012 (2012) http://interactomedfciharvardedu/indexphp?page=login&lg=/H_sapiens/indexphp?page=newrelease.
-
-
-
-
15
-
-
26444593986
-
A novel high-throughput (HTP) cloning strategy for site-directed designed chimeragenesis and mutation using the Gateway cloning system
-
Suzuki Y, Kagawa N, Fujino T, Sumiya T, Andoh T, et al. (2005) A novel high-throughput (HTP) cloning strategy for site-directed designed chimeragenesis and mutation using the Gateway cloning system. Nucleic Acids Res 33: e109.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 109
-
-
Suzuki, Y.1
Kagawa, N.2
Fujino, T.3
Sumiya, T.4
Andoh, T.5
-
16
-
-
46249129056
-
Isoform discovery by targeted cloning, ‘deep-well’ pooling and parallel sequencing
-
Salehi-Ashtiani K, Yang X, Derti A, Tian W, Hao T, et al. (2008) Isoform discovery by targeted cloning, ‘deep-well’ pooling and parallel sequencing. Nat Methods 5: 597–600.
-
(2008)
Nat Methods
, vol.5
, pp. 597-600
-
-
Salehi-Ashtiani, K.1
Yang, X.2
Derti, A.3
Tian, W.4
Hao, T.5
-
17
-
-
84898815256
-
Elucidating common structural features of human pathogenic variations using large-scale atomic-resolution protein networks
-
Das J, Lee HR, Sagar A, Fragoza R, Liang J, et al. (2014) Elucidating common structural features of human pathogenic variations using large-scale atomic-resolution protein networks. Hum Mutat 35: 585–593.
-
(2014)
Hum Mutat
, vol.35
, pp. 585-593
-
-
Das, J.1
Lee, H.R.2
Sagar, A.3
Fragoza, R.4
Liang, J.5
-
18
-
-
84885639776
-
Integrative annotation of variants from 1092 humans: application to cancer genomics
-
Khurana E, Fu Y, Colonna V, Mu XJ, Kang HM, et al. (2013) Integrative annotation of variants from 1092 humans: application to cancer genomics. Science 342: 1235587.
-
(2013)
Science
, vol.342
, pp. 1235587
-
-
Khurana, E.1
Fu, Y.2
Colonna, V.3
Mu, X.J.4
Kang, H.M.5
-
19
-
-
80053458464
-
Minor variant detection in amplicons using 454 massive parallel pyrosequencing: experiences and considerations for successful applications
-
Vandenbroucke I, Van Marck H, Verhasselt P, Thys K, Mostmans W, et al. (2011) Minor variant detection in amplicons using 454 massive parallel pyrosequencing: experiences and considerations for successful applications. Biotechniques 51: 167–177.
-
(2011)
Biotechniques
, vol.51
, pp. 167-177
-
-
Vandenbroucke, I.1
Van Marck, H.2
Verhasselt, P.3
Thys, K.4
Mostmans, W.5
-
20
-
-
78651330430
-
COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer
-
Forbes SA, Bindal N, Bamford S, Cole C, Kok CY, et al. (2011) COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer. Nucleic Acids Res 39: D945–950.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D945-950
-
-
Forbes, S.A.1
Bindal, N.2
Bamford, S.3
Cole, C.4
Kok, C.Y.5
-
21
-
-
77956295988
-
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, et al. (2010) The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res 20: 1297–1303.
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
-
22
-
-
10644258336
-
Constitutional aneuploidy and cancer predisposition caused by biallelic mutations in BUB1B
-
Hanks S, Coleman K, Reid S, Plaja A, Firth H, et al. (2004) Constitutional aneuploidy and cancer predisposition caused by biallelic mutations in BUB1B. Nat Genet 36: 1159–1161.
-
(2004)
Nat Genet
, vol.36
, pp. 1159-1161
-
-
Hanks, S.1
Coleman, K.2
Reid, S.3
Plaja, A.4
Firth, H.5
-
23
-
-
77953770988
-
Molecular causes for BUBR1 dysfunction in the human cancer predisposition syndrome mosaic variegated aneuploidy
-
Suijkerbuijk SJ, van Osch MH, Bos FL, Hanks S, Rahman N, et al. (2010) Molecular causes for BUBR1 dysfunction in the human cancer predisposition syndrome mosaic variegated aneuploidy. Cancer Res 70: 4891–4900.
-
(2010)
Cancer Res
, vol.70
, pp. 4891-4900
-
-
Suijkerbuijk, S.J.1
van Osch, M.H.2
Bos, F.L.3
Hanks, S.4
Rahman, N.5
-
24
-
-
32444444090
-
Monoallelic BUB1B mutations and defective mitotic-spindle checkpoint in seven families with premature chromatid separation (PCS) syndrome
-
Matsuura S, Matsumoto Y, Morishima K, Izumi H, Matsumoto H, et al. (2006) Monoallelic BUB1B mutations and defective mitotic-spindle checkpoint in seven families with premature chromatid separation (PCS) syndrome. Am J Med Genet A 140: 358–367.
-
(2006)
Am J Med Genet A
, vol.140
, pp. 358-367
-
-
Matsuura, S.1
Matsumoto, Y.2
Morishima, K.3
Izumi, H.4
Matsumoto, H.5
-
25
-
-
0032865413
-
SMAD genes in juvenile polyposis
-
Roth S, Sistonen P, Salovaara R, Hemminki A, Loukola A, et al. (1999) SMAD genes in juvenile polyposis. Genes Chromosomes Cancer 26: 54–61.
-
(1999)
Genes Chromosomes Cancer
, vol.26
, pp. 54-61
-
-
Roth, S.1
Sistonen, P.2
Salovaara, R.3
Hemminki, A.4
Loukola, A.5
-
26
-
-
7844251203
-
Mutations in DPC4 (SMAD4) cause juvenile polyposis syndrome, but only account for a minority of cases
-
Houlston R, Bevan S, Williams A, Young J, Dunlop M, et al. (1998) Mutations in DPC4 (SMAD4) cause juvenile polyposis syndrome, but only account for a minority of cases. Hum Mol Genet 7: 1907–1912.
-
(1998)
Hum Mol Genet
, vol.7
, pp. 1907-1912
-
-
Houlston, R.1
Bevan, S.2
Williams, A.3
Young, J.4
Dunlop, M.5
-
27
-
-
47549090432
-
TGFbeta in Cancer
-
Massague J, (2008) TGFbeta in Cancer. Cell 134: 215–230.
-
(2008)
Cell
, vol.134
, pp. 215-230
-
-
Massague, J.1
-
28
-
-
81255136932
-
Molecular genetic characterization of SMAD signaling molecules in pulmonary arterial hypertension
-
Nasim MT, Ogo T, Ahmed M, Randall R, Chowdhury HM, et al. (2011) Molecular genetic characterization of SMAD signaling molecules in pulmonary arterial hypertension. Hum Mutat 32: 1385–1389.
-
(2011)
Hum Mutat
, vol.32
, pp. 1385-1389
-
-
Nasim, M.T.1
Ogo, T.2
Ahmed, M.3
Randall, R.4
Chowdhury, H.M.5
-
29
-
-
84919648748
-
The molecular genetics and cellular mechanisms underlying pulmonary arterial hypertension
-
Machado RD, (2012) The molecular genetics and cellular mechanisms underlying pulmonary arterial hypertension. Scientifica (Cairo) 2012: 106576.
-
(2012)
Scientifica (Cairo)
, vol.2012
, pp. 106576
-
-
Machado, R.D.1
-
30
-
-
80052411919
-
Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM
-
Tuncbag N, Gursoy A, Nussinov R, Keskin O, (2011) Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM. Nat Protoc 6: 1341–1354.
-
(2011)
Nat Protoc
, vol.6
, pp. 1341-1354
-
-
Tuncbag, N.1
Gursoy, A.2
Nussinov, R.3
Keskin, O.4
-
31
-
-
84867881743
-
Structure-based prediction of protein-protein interactions on a genome-wide scale
-
Zhang QC, Petrey D, Deng L, Qiang L, Shi Y, et al. (2012) Structure-based prediction of protein-protein interactions on a genome-wide scale. Nature 490: 556–560.
-
(2012)
Nature
, vol.490
, pp. 556-560
-
-
Zhang, Q.C.1
Petrey, D.2
Deng, L.3
Qiang, L.4
Shi, Y.5
-
32
-
-
84878858665
-
INstruct: a database of high-quality 3D structurally resolved protein interactome networks
-
Meyer MJ, Das J, Wang X, Yu H, (2013) INstruct: a database of high-quality 3D structurally resolved protein interactome networks. Bioinformatics 29: 1577–1579.
-
(2013)
Bioinformatics
, vol.29
, pp. 1577-1579
-
-
Meyer, M.J.1
Das, J.2
Wang, X.3
Yu, H.4
-
33
-
-
84871967106
-
Interactome3D: adding structural details to protein networks
-
Mosca R, Ceol A, Aloy P, (2013) Interactome3D: adding structural details to protein networks. Nat Methods 10: 47–53.
-
(2013)
Nat Methods
, vol.10
, pp. 47-53
-
-
Mosca, R.1
Ceol, A.2
Aloy, P.3
-
34
-
-
84889032390
-
Exploring mechanisms of human disease through structurally resolved protein interactome networks
-
Das J, Fragoza R, Lee HR, Cordero NA, Guo Y, et al. (2014) Exploring mechanisms of human disease through structurally resolved protein interactome networks. Mol Biosyst 10: 9–17.
-
(2014)
Mol Biosyst
, vol.10
, pp. 9-17
-
-
Das, J.1
Fragoza, R.2
Lee, H.R.3
Cordero, N.A.4
Guo, Y.5
-
35
-
-
0030882381
-
Mutations predisposing to hereditary nonpolyposis colorectal cancer: database and results of a collaborative study. The International Collaborative Group on Hereditary Nonpolyposis Colorectal Cancer
-
Peltomaki P, Vasen HF, (1997) Mutations predisposing to hereditary nonpolyposis colorectal cancer: database and results of a collaborative study. The International Collaborative Group on Hereditary Nonpolyposis Colorectal Cancer. Gastroenterology 113: 1146–1158.
-
(1997)
Gastroenterology
, vol.113
, pp. 1146-1158
-
-
Peltomaki, P.1
Vasen, H.F.2
-
36
-
-
0038407386
-
A yeast two-hybrid assay provides a simple way to evaluate the vast majority of hMLH1 germ-line mutations
-
Kondo E, Suzuki H, Horii A, Fukushige S, (2003) A yeast two-hybrid assay provides a simple way to evaluate the vast majority of hMLH1 germ-line mutations. Cancer Res 63: 3302–3308.
-
(2003)
Cancer Res
, vol.63
, pp. 3302-3308
-
-
Kondo, E.1
Suzuki, H.2
Horii, A.3
Fukushige, S.4
-
37
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, et al. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1: 376–386.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
-
38
-
-
34247396011
-
A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC)
-
Ong SE, Mann M, (2006) A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nat Protoc 1: 2650–2660.
-
(2006)
Nat Protoc
, vol.1
, pp. 2650-2660
-
-
Ong, S.E.1
Mann, M.2
-
39
-
-
77955476243
-
DNA damage signaling recruits the Rtt107-Slx4 scaffolds via Dpb11 to mediate replication stress response
-
Ohouo PY, Bastos de Oliveira FM, Almeida BS, Smolka MB, (2010) DNA damage signaling recruits the Rtt107-Slx4 scaffolds via Dpb11 to mediate replication stress response. Mol Cell 39: 300–306.
-
(2010)
Mol Cell
, vol.39
, pp. 300-306
-
-
Ohouo, P.Y.1
Bastos de Oliveira, F.M.2
Almeida, B.S.3
Smolka, M.B.4
-
40
-
-
0034717283
-
Identification of a second MutL DNA mismatch repair complex (hPMS1 and hMLH1) in human epithelial cells
-
Leung WK, Kim JJ, Wu L, Sepulveda JL, Sepulveda AR, (2000) Identification of a second MutL DNA mismatch repair complex (hPMS1 and hMLH1) in human epithelial cells. J Biol Chem 275: 15728–15732.
-
(2000)
J Biol Chem
, vol.275
, pp. 15728-15732
-
-
Leung, W.K.1
Kim, J.J.2
Wu, L.3
Sepulveda, J.L.4
Sepulveda, A.R.5
-
41
-
-
34447318130
-
The FANCJ/MutLalpha interaction is required for correction of the cross-link response in FA-J cells
-
Peng M, Litman R, Xie J, Sharma S, Brosh RM, Jret al. (2007) The FANCJ/MutLalpha interaction is required for correction of the cross-link response in FA-J cells. EMBO J 26: 3238–3249.
-
(2007)
EMBO J
, vol.26
, pp. 3238-3249
-
-
Peng, M.1
Litman, R.2
Xie, J.3
Sharma, S.4
Brosh, R.M.5
-
42
-
-
33645803596
-
Differential effects of Hsc70 and Hsp70 on the intracellular trafficking and functional expression of epithelial sodium channels
-
Goldfarb SB, Kashlan OB, Watkins JN, Suaud L, Yan W, et al. (2006) Differential effects of Hsc70 and Hsp70 on the intracellular trafficking and functional expression of epithelial sodium channels. Proc Natl Acad Sci U S A 103: 5817–5822.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 5817-5822
-
-
Goldfarb, S.B.1
Kashlan, O.B.2
Watkins, J.N.3
Suaud, L.4
Yan, W.5
-
43
-
-
0025126351
-
Uncoating protein (hsc70) binds a conformationally labile domain of clathrin light chain LCa to stimulate ATP hydrolysis
-
DeLuca-Flaherty C, McKay DB, Parham P, Hill BL, (1990) Uncoating protein (hsc70) binds a conformationally labile domain of clathrin light chain LCa to stimulate ATP hydrolysis. Cell 62: 875–887.
-
(1990)
Cell
, vol.62
, pp. 875-887
-
-
DeLuca-Flaherty, C.1
McKay, D.B.2
Parham, P.3
Hill, B.L.4
-
44
-
-
84856822460
-
The cellular chaperone hsc70 is specifically recruited to reovirus viral factories independently of its chaperone function
-
Kaufer S, Coffey CM, Parker JS, (2012) The cellular chaperone hsc70 is specifically recruited to reovirus viral factories independently of its chaperone function. J Virol 86: 1079–1089.
-
(2012)
J Virol
, vol.86
, pp. 1079-1089
-
-
Kaufer, S.1
Coffey, C.M.2
Parker, J.S.3
-
45
-
-
77956338533
-
High-resolution mapping of protein sequence-function relationships
-
Fowler DM, Araya CL, Fleishman SJ, Kellogg EH, Stephany JJ, et al. (2010) High-resolution mapping of protein sequence-function relationships. Nat Methods 7: 741–746.
-
(2010)
Nat Methods
, vol.7
, pp. 741-746
-
-
Fowler, D.M.1
Araya, C.L.2
Fleishman, S.J.3
Kellogg, E.H.4
Stephany, J.J.5
-
46
-
-
84875870975
-
Activity-enhancing mutations in an E3 ubiquitin ligase identified by high-throughput mutagenesis
-
Starita LM, Pruneda JN, Lo RS, Fowler DM, Kim HJ, et al. (2013) Activity-enhancing mutations in an E3 ubiquitin ligase identified by high-throughput mutagenesis. Proc Natl Acad Sci U S A 110: E1263–1272.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 1263-1272
-
-
Starita, L.M.1
Pruneda, J.N.2
Lo, R.S.3
Fowler, D.M.4
Kim, H.J.5
-
47
-
-
84867644046
-
A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function
-
Araya CL, Fowler DM, Chen W, Muniez I, Kelly JW, et al. (2012) A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function. Proc Natl Acad Sci U S A 109: 16858–16863.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 16858-16863
-
-
Araya, C.L.1
Fowler, D.M.2
Chen, W.3
Muniez, I.4
Kelly, J.W.5
-
48
-
-
77957963240
-
Rapid construction of empirical RNA fitness landscapes
-
Pitt JN, Ferre-D'Amare AR, (2010) Rapid construction of empirical RNA fitness landscapes. Science 330: 376–379.
-
(2010)
Science
, vol.330
, pp. 376-379
-
-
Pitt, J.N.1
Ferre-D'Amare, A.R.2
-
49
-
-
80052158097
-
The mutational landscape of head and neck squamous cell carcinoma
-
Stransky N, Egloff AM, Tward AD, Kostic AD, Cibulskis K, et al. (2011) The mutational landscape of head and neck squamous cell carcinoma. Science 333: 1157–1160.
-
(2011)
Science
, vol.333
, pp. 1157-1160
-
-
Stransky, N.1
Egloff, A.M.2
Tward, A.D.3
Kostic, A.D.4
Cibulskis, K.5
-
50
-
-
84863922124
-
Comprehensive molecular characterization of human colon and rectal cancer
-
Atlas TCG, (2012) Comprehensive molecular characterization of human colon and rectal cancer. Nature 487: 330–337.
-
(2012)
Nature
, vol.487
, pp. 330-337
-
-
Atlas, T.C.G.1
-
51
-
-
0024403619
-
High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis
-
Cunningham BC, Wells JA, (1989) High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis. Science 244: 1081–1085.
-
(1989)
Science
, vol.244
, pp. 1081-1085
-
-
Cunningham, B.C.1
Wells, J.A.2
-
52
-
-
84857780876
-
Evidence for network evolution in an Arabidopsis interactome map
-
Consortium AIM, (2011) Evidence for network evolution in an Arabidopsis interactome map. Science 333: 601–607.
-
(2011)
Science
, vol.333
, pp. 601-607
-
-
Consortium, A.I.M.1
-
53
-
-
84878287076
-
Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways
-
Das J, Vo TV, Wei X, Mellor JC, Tong V, et al. (2013) Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways. Sci Signal 6: ra38.
-
(2013)
Sci Signal
, vol.6
, pp. a38
-
-
Das, J.1
Vo, T.V.2
Wei, X.3
Mellor, J.C.4
Tong, V.5
-
54
-
-
82355190165
-
Yeast one-hybrid assays for gene-centered human gene regulatory network mapping
-
Reece-Hoyes JS, Barutcu AR, McCord RP, Jeong JS, Jiang L, et al. (2011) Yeast one-hybrid assays for gene-centered human gene regulatory network mapping. Nat Methods 8: 1050–1052.
-
(2011)
Nat Methods
, vol.8
, pp. 1050-1052
-
-
Reece-Hoyes, J.S.1
Barutcu, A.R.2
McCord, R.P.3
Jeong, J.S.4
Jiang, L.5
-
55
-
-
33750882505
-
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
-
Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW, 3rdet al. (2006) Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nat Biotechnol 24: 1429–1435.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 1429-1435
-
-
Berger, M.F.1
Philippakis, A.A.2
Qureshi, A.M.3
He, F.S.4
Estep, P.W.5
-
56
-
-
84864122193
-
Gel mobility shift assays to detect protein-RNA interactions
-
Yakhnin AV, Yakhnin H, Babitzke P, (2012) Gel mobility shift assays to detect protein-RNA interactions. Methods Mol Biol 905: 201–211.
-
(2012)
Methods Mol Biol
, vol.905
, pp. 201-211
-
-
Yakhnin, A.V.1
Yakhnin, H.2
Babitzke, P.3
-
57
-
-
84857148223
-
Chemical chaperones assist intracellular folding to buffer mutational variations
-
Bandyopadhyay A, Saxena K, Kasturia N, Dalal V, Bhatt N, et al. (2012) Chemical chaperones assist intracellular folding to buffer mutational variations. Nat Chem Biol 8: 238–245.
-
(2012)
Nat Chem Biol
, vol.8
, pp. 238-245
-
-
Bandyopadhyay, A.1
Saxena, K.2
Kasturia, N.3
Dalal, V.4
Bhatt, N.5
-
58
-
-
79960617916
-
Structural principles within the human-virus protein-protein interaction network
-
Franzosa EA, Xia Y, (2011) Structural principles within the human-virus protein-protein interaction network. Proc Natl Acad Sci U S A 108: 10538–10543.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 10538-10543
-
-
Franzosa, E.A.1
Xia, Y.2
-
59
-
-
78651344377
-
3did: identification and classification of domain-based interactions of known three-dimensional structure
-
Stein A, Ceol A, Aloy P, (2011) 3did: identification and classification of domain-based interactions of known three-dimensional structure. Nucleic Acids Res 39: D718–723.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D718-723
-
-
Stein, A.1
Ceol, A.2
Aloy, P.3
-
60
-
-
13844264506
-
iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions
-
Finn RD, Marshall M, Bateman A, (2005) iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions. Bioinformatics 21: 410–412.
-
(2005)
Bioinformatics
, vol.21
, pp. 410-412
-
-
Finn, R.D.1
Marshall, M.2
Bateman, A.3
-
61
-
-
79960987021
-
A public genome-scale lentiviral expression library of human ORFs
-
Yang X, Boehm JS, Salehi-Ashtiani K, Hao T, Shen Y, et al. (2011) A public genome-scale lentiviral expression library of human ORFs. Nat Methods 8: 659–661.
-
(2011)
Nat Methods
, vol.8
, pp. 659-661
-
-
Yang, X.1
Boehm, J.S.2
Salehi-Ashtiani, K.3
Hao, T.4
Shen, Y.5
-
62
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754–1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
63
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078–2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
-
64
-
-
0034854563
-
High-throughput yeast two-hybrid assays for large-scale protein interaction mapping
-
Walhout AJ, Vidal M, (2001) High-throughput yeast two-hybrid assays for large-scale protein interaction mapping. Methods 24: 297–306.
-
(2001)
Methods
, vol.24
, pp. 297-306
-
-
Walhout, A.J.1
Vidal, M.2
-
65
-
-
77954237882
-
Network organization of the human autophagy system
-
Behrends C, Sowa ME, Gygi SP, Harper JW, (2010) Network organization of the human autophagy system. Nature 466: 68–76.
-
(2010)
Nature
, vol.466
, pp. 68-76
-
-
Behrends, C.1
Sowa, M.E.2
Gygi, S.P.3
Harper, J.W.4
|