Industrial enzymes and biocatalysis

Handbook of Industrial Chemistry and Biotechnology: Twelfth Edition

Volumn 2-2, Issue , 2012, Pages 1183-1227

  McAuliffe, Joseph C ^a  

^a DUPONT COMPANY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOTECHNOLOGY; GENETIC ENGINEERING;

BIOCATALYSIS; INDUSTRIAL ENZYMES;

ENZYMES;

EID: 84918778279     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-1-4614-4259-2_31     Document Type: Chapter

References (130)

1. Goodsell DS (2009) The machinery of life. Springer, New York
2. Renneberg R (2008) Biotechnology for beginners. Academic, Amsterdam
3. Jencks WP (1987) Catalysis in chemistry and enzymology. McGraw-Hill, New York
4. Cook PF, Cleland WW (2007) Enzyme kinetics and mechanism. Garland Science, New York
5. Buchholz K, Kasche V, Bornscheuer UT (2005) Biocatalysts and enzyme technology. Wiley-VCH, Weinheim
6. Aehle W (ed) (2007) Enzymes in industry: production and applications, 3rd edn. Wiley-VCH, Weinheim
7. Polaina J, MacCabe AP (eds) (2007) Industrial enzymes, structure, functions and applications. Springer, Dordrecht
8. Whitehurst RJ, Van Oort M (eds) (2010) Enzymes in food technology, 2nd edn. Wiley-Blackwell, Oxford
9. Olempska-Beer ZS et al (2006) Food-processing enzymes from recombinant microorganisms-a review. Reg Toxicol Pharm 45:144-158
10. Dewan SS, Enzymes in industrial applications: global markets (2011) Report BIO030F, BCC Research, Wellesley, MD
11. Sandhya C, Nampoothiri KM Pandey A (2005) Microbial proteases. In: Barredo JL (ed) Microbial enzymes and biotrans-formations, Methods in biotechnology, vol 17. Humana Press, Totawa, pp 165-179
12. Eggleston G (2007) Advances in the industrial application of enzymes on carbohydrate-based materials. In: Eggleston G, Vercellotti JR (eds) Industrial application of enzymes on carbohydrate-based materials, ACS symposium series, vol 972. American Chemical Society, New York, pp 1-16
13. Aehle W (ed) (2004) Nonindustrial enzyme usage. In: Enzymes in industry: production and applications (Ch. 6), 2nd edn. Wiley-VCH, Weinheim
14. World enzymes (2007) Study #2229, The Freedonia Group, Cleveland, OH
15. Lairson LL et al (2008) Glycosyltransferases: structures, functions, and mechanisms. Annu Rev Biochem 77:521-555
16. Straathof AJJ, Aldercreutz P (eds) (2001) Applied biocatalysis, 2nd edn. Harwood, Amsterdam
17. Bommarius AS, Riebel BR (2004) Biocatalysis-fundamentals and applications. Wiley-VCH, Weinheim
18. Liese A (2000) Industrial biotransformations. Wiley-VCH, Weinheim
19. Kohler R (1972) The reception of Eduard Buchner's discovery of cell-free fermentation. J Hist Biol 5:327-353
20. Sumner JB (1946) The chemical nature of enzymes. Nobel Lecture, 12 Dec 1946
21. Phillips DC (1967) The hen egg-white lysozyme molecule. Proc Natl Acad Sci U S A 57:484-495
22. Estell DA, Graycar TP, Wells JA (1985) Engineering an enzyme by site-directed mutagenesis to be resistant to chemical oxidation. J Biol Chem 260:6518-6521
23. Manz A, Pamme N, Lossifidis D (2004) Bioanalytical chemistry. World Scientific Publishing Company, Singapore
24. Houg DW, Danson MJ (1999) Extremozymes. Curr Opin Mol Biol 3:39-46
25. Reymond J-L, Fluxa VS, Maillard N (2009) Enzyme assays. Chem Commun 1:34-46
26. Chen LH et al (1992) 4-Oxalocrotonate tautomerase, an enzyme composed of 62 amino acid residues per monomer. J Biol Chem 267:17716-17721
27. Smith S, Witkowski A, Joshi AK (2003) Structural and functional organization of the animal fatty acid synthase. Prog Lipid Res 42:289-317
28. Dill KA, Ozkan SB, Shell MS, Weiki TR (2008) The protein folding problem. Annu Rev Biophys 37:289-316
29. Gevaert K, Vandekerkhove J (2000) Protein identification methods in proteomics. Electrophoresis 21:1145-1154
30. Mittermaier A, Kay LE (2006) New tools provide new insights in NMR studies of protein dynamics. Science 312:224-228
31. Masel RI (2001) Chemical kinetics and catalysis. Wiley-Interscience, Oxford
32. Bugg T (2004) Introduction to enzyme and coenzyme chemistry, 2nd edn. Wiley-Blackwell, Oxford, p 31
33. Benkovic SJ, Hammes GG, Hammes-Schiffer S (2008) Free energy landscape of enzyme catalysis. Biochemistry 47:3317-3321
34. Sauer J et al (2000) Glucoamylase: structure/function relationships and protein engineering. Biochim Biophys Acta 1543:275-293
35. Messerschmidt A (ed) (2011) Handbook of metalloproteins. Wiley-Blackwell, Oxford
36. Eisenmesser EZ et al (2005) Intrinsic dynamics of an enzyme underlies catalysis. Nature 438:117-121
37. Sutcliffe MJ, Scrutton NS (2002) A new conceptual framework for enzyme catalysis. Eur J Biochem 269:3096-3102
38. Menten L, Michaelis MI (1913) Die kinetik der invertinwirkung. Biochem Z 49:333-369
39. Estell DA (1991) Liquid detergent with stabilized enzyme. US Patent 5,039,446
40. Yeh W-K, Yang H-C, McCarthy JR (eds) (2010) Enzyme technologies: metagenomics, evolution, biocatalysis and biosyn-thesis, Part A. Wiley, New York
41. Martin CH et al (2009) Synthetic metabolism: engineering biology at the protein and pathway scales. Chem Biol 16:277-286
42. Warnecke F, Hess MA (2009) A perspective: metatranscriptomics as a tool for the discovery of novel biocatalysts. J Biotechnol 142:91-95
43. Eggert T (2006) Optimization of industrial enzymes by molecular engineering. In: Liese A, Seelbach K, Wandrey C (eds) Industrial biotransformations (Ch. 4), 2nd edn. Wiley-VCH, Weinheim
44. Rondon MR et al (2000) Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl Environ Microbiol 66:2541-2547
45. Knietsch A et al (2003) Construction and screening of metagenomic libraries derived from enrichment cultures: generation of a gene bank for genes conferring alcohol oxidoreductase activity on Escherichia coli. Appl Environ Microbiol 69:1408-1416
46. Ward DE et al (2002) Proteolysis in hyperthermophilic microorganisms. Archaea 1:63-74
47. Böttcher D, Bornscheuer UT (2010) Protein engineering of microbial enzymes. Curr Opin Microbiol 13:274-282
48. Dodge T (2009) Production of industrial enzymes. In: Whitehurst RJ, van Oort M (eds) Enzymes in food technology, 2nd edn. Wiley-Blackwell, Oxford, UK
49. Krishna C (2005) Solid-state fermentation system-an overview. Crit Rev Biotechnol 25:1-30
50. Hood EE (2002) From green plants to industrial enzymes. Enzyme Microb Technol 30:279-283
51. Kumar D et al (2008) Microbial proteases and application as laundry detergent additive. Res J Microbiol 3:661-672
52. Outtrup H, Jørgensen ST (2008) The importance of bacillus species in the production of industrial enzymes. In: Berkeley R, Heyndrickx M, Logan N, De Vos P (eds) Applications and systematics of Bacillus and relatives. Blackwell Science, Oxford
53. Maurer K-H (2004) Detergent proteases. Curr Opin Biotechnol 15:330-334
54. Choudhary RB, Jana AK, Jha MK (2004) Enzyme technology applications in leather processing. Indian J Chem Technol 11:659-671
55. De Souza PM, Magalhães PO (2010) Application of microbial a-amylase in industry-a review. Braz J Microbiol 41:850-861
56. Gupta R et al (2003) Microbial-amylases: a biotechnological perspective. Process Biochem 38:1599-1616
57. Kumar P, Satyanarayana T (2009) Microbial glucoamylases: characteristics and applications. Crit Rev Biotechnol 29:225-255
58. Ito S et al (2003) Carbohydrate-active enzymes from alkaliphiles. J Appl Glycosci 50:257-262
59. Rausch KD, Belyea RL (2006) The future of co-products from corn processing. Appl Biochem Biotechnol 128:47-86
60. Bhosale SH, Rao MB, Deshpande VV (1996) Molecular and industrial aspects of glucose isomerase. Microbiol Rev 60:280-300
61. Sukumaran RK, Singhania RR, Pandey A (2005) Microbial cellulases-production, applications and challenges. J Sci Ind Res 64:832-844
62. Shallom D, Shoham Y (2003) Microbial hemicellulases. Curr Opin Microbiol 6:219-228
63. Soundari SG, Sashi V (2009) Bacterial xylanases. Asian J Microbiol Biotechnol Environ Sci 11:677-682
64. Hoondal GS et al (2002) Microbial alkaline pectinases and their industrial applications: a review. Appl Microbiol Biotechnol 59:409-418
65. Sun Y, Cheng J (2002) Hydrolysis of lignocellulosic materials for ethanol production: a review. Bioresour Technol 83:1-11
66. Shanmugam KT, Ingram LO (2008) Engineering biocatalysts for production of commodity chemicals. J Mol Microbiol Biotechnol 15:8-15
67. Anuradha P et al (2009) Microbial lipases: a potential tool for industrial applications. J Pure Appl Microbiol 3:301-306
68. De Maria L et al (2007) Phospholipases and their industrial applications. Appl Microbiol Biotechnol 74:290-300
69. Singh B, Kunze G, Satyanarayana T (2011) Developments in biochemical aspects and biotechnological applications of microbial phytases. Biotechnol Mol Biol Rev 6:69-87
70. Xu F (2005) Applications of oxidoreductases: recent progress. Ind Biotechnol 1:38-50
71. Bankar SB, Bule MV, Singhal RS, Ananthanarayan L (2009) Glucose oxidase-an overview. Biotechnol Adv 27:489-501
72. Chelikani P, Fita I, Loewen PC (2004) Diversity of structures and properties among catalases. Cell Mol Life Sci 61:19-208
73. Riva S (2006) Laccases: blue enzymes for green chemistry. Trends Biotechnol 24:219-226
74. Majeau J-A, Brar SK, Tyagi RD (2010) Laccases for removal of recalcitrant and emerging pollutants. Bioresour Technol 101:2331-2350
75. Theriot CM, Grunden AM (2010) Hydrolysis of organophosphorus compounds by microbial enzymes. Appl Microbiol Biotechnol 89:35-43
76. Pedreschi F, Kaack K, Granby K (2008) The effect of asparaginase in the formation of acrylamide in French fries. Food Chem 109:386-392
77. Mathews I et al (2007) Structure of a novel enzyme that catalyzes acyl transfer to alcohols in aqueous conditions. Biochemistry 46:8969-8979
78. Ager DJ, May O (2008) Pharmaceutical industry: biocatalysts and chemocatalysts. In: Begley TP (ed) Wiley encyclopedia of chemical biology. Wiley, New York, pp 1-15
79. Takasaki Y, Tanabe O. Enzyme method for converting glucose in glucose syrups to fructose. US Patent 3,616,221
80. Davis BG, Boyer V (2001) Biocatalysis and enzymes in organic synthesis. Nat Prod Rep 18:618-640
81. Kirk O, Christensen MW (2002) Lipases from Candida antarctica-unique biocatalysts from a unique origin. Org Proc Res Dev 6:446-451
82. Greenberg WA et al (2009) Aldolase enzymes for complex synthesis. In: Whittall J, Sutton P (eds) Practical methods for biocatalysis and biotransformations (Ch. 6). Wiley, Chichester
83. Guisan JM (ed) (2006) Immobilization of enzymes and cells (Methods in biotechnology), 2nd edn. Humana Press, Totowa
84. Přenosil JE, Kut ÖM, Dunn IJ, Heinzle E (2009) Biocatalysis, 2. Immobilized biocatalysts. In: Bellussi G et al (eds) Ullmann's encyclopedia of industrial chemistry. Wiley-VCH, Weinheim
85. Berendsen WR, Lapin A, Reuss M (2006) Investigations of reaction kinetics for immobilized enzymes-identification of parameters in the presence of diffusion limitation. Biotechnol Prog 22:1305-1312
86. Fernandez-Lafuente R (2010) Lipase from Thermomyces lanuginosus: uses and prospects as an industrial biocatalyst. J Mol Catal B: Enzym 62:197-212
87. Mateo C et al (2007) Advances in the design of new epoxy supports for enzyme immobilization-stabilization. Biochem Soc Trans 35:1593-1601
88. Kim J, Grate JW, Wang P (2008) Nanobiocatalysis and its potential applications. Trends Biotechnol 26:639-646
89. Betancor L, Luckarift HR (2008) Bioinspired enzyme encapsulation for biocatalysis. Trends Biotechnol 26:566-572
90. Kristenen JB et al (2010) Biomimetic silica encapsulation of enzymes for replacement of biocides in antifouling coatings. Green Chem 12:387-394
91. Becker U et al (2008) Industrial applications of whole-cell biocatalysis. Pharm Technol 41(S6):S8-S11
92. Bechtold M, Panke S (2009) In situ product recovery integrated with biotransformations. Chimia 63:345-348
93. Shuler ML, Kargi F (2002) Bioprocess engineering: basic concepts, 2nd edn. Prentice-Hall, Upper Saddle River
94. Koskinen AMP, Klibanov AM (eds) (1995) Enzymatic reactions in organic media. Springer, Berlin
95. Klibanov AM (2001) Improving enzymes by using them in organic solvents. Nature 409:241-246
96. Adlercreutz P (2008) Fundamentals of biocatalysis in neat organic solvents. In: Carrea G, Riva S (eds) Organic synthesis with enzymes in non-aqueous media (Ch. 1). Wiley-VCH, Weinheim
97. Drauz K, Waldmann H (eds) (2002) Enzyme catalysis in organic synthesis, 2nd edn. Wiley-VCH, Weinheim
98. Krieger N et al (2004) Non-aqueous biocatalysis in heterogeneous solvent systems. Food Technol Biotechnol 42:279-286
99. Tufvesson P et al (2010) Process considerations for the scale-up and implementation of biocatalysis. Food Bioprod Process 88:3-11
100. Parker K, Salas N, Nwosu VC (2010) High fructose corn syrup: production, uses and public health concerns. Biotechnol Mol Biol Rev 5:71-78
101. Yamada H, Kobayashi M (1996) Nitrile hydratase and its application to industrial production of acrylamide. Biosci Biotechnol Biochem 60:391-1400
102. Bruggink A (ed) (2001) Synthesis of b-lactam antibiotics: chemistry, biocatalysis & process integration. Kluwer Academic, Dordrecht
103. Sonke T, Kaptein B, Schoemaker HE (2009) Use of enzymes in the synthesis of amino acids. In: Hughes AB (ed) Amino acids, peptides and proteins in organic chemistry: origins and synthesis of amino acids (Ch. 3), vol 1. Wiley-VCH, Weinheim
104. Tosa T, Mori T, Fuse N, Chibata I (1969) Studies on continuous enzyme reactions 6: enzymatic properties of DEAE-sepharose aminoacylase complex. Agr Biol Chem 33:1047-1056
105. Patel R (ed) (2006) Biocatalysis in the pharmaceutical and bio-technology industries. CRC Press, Florida
106. Woodley JM (2008) New opportunities for biocatalysis: making pharmaceutical processes greener. Trends Biotechnol 26:321-327
107. Erb S (2006) Single-enantiomer drugs poised for further market growth. Pharm Technol 30(suppl):s14-s18
108. Meyer H-P, Turner NJ (2009) Biotechnological manufacturing options for organic chemistry. Mini-Rev Org Chem 6:300-306
109. Stinson SC (2001) Chiral pharmaceuticals. Chem Eng News 79:79-97
110. Tao J, Xu J-H (2009) Biocatalysis in development of green pharmaceutical processes. Curr Opin Chem Biol 13:43-50
111. Pollard DJ, Woodley JM (2007) Biocatalysis for pharmaceutical intermediates: the future is now. Trends Biotechnol 25:66-73
112. Liljeblad A, Kallinen A, Kanerva LT (2009) Biocatalysis in the preparation of the statin side chain. Curr Org Synth 6:362-379
113. Chen X, Kowal P, Wang PG (2000) Large-scale enzymatic synthesis of oligosaccharides. Curr Opin Drug Discov Devel 3:756-763
114. Taniguchi H (2008) Biocatalysis-based development of oligosaccharides in Japan. In: Hou CT, Shaw J-F (eds) Biocatalysis and bioenergy (Ch. 17). Wiley, New York
115. Monsan P, Paul F, Pelenc V, Boures E (1996) Enzymatic production of a-butylglucoside and its fatty acid esters. Ann New York Acad Sci 799:633-641
116. Wong C-H, Whitesides G (1994) Enzymes in synthetic organic chemistry. In: Wong C-H et al (eds) Tetrahedron organic chemistry, vol 12. Pergamon, Oxford
117. Kumar L, Awasthi G, Singh B (2011) Extremophiles: a novel source of industrially important enzymes. Biotechnology 2011:1-15
118. Gomes J, Steiner W (2004) The biocatalytic potential of extremophiles and extremozymes. Food Technol Biotechnol 42:279-286
119. Arnold U (2009) Incorporation of non-natural modules into proteins: structural features beyond the genetic code. Biotechnol Lett 31:1129-1139
120. Tang Y, Tirrell DA (2001) Biosynthesis of a highly stable coiled-coil protein containing hexafluoroleucine in an engineered bacterial host. J Am Chem Soc 123:11089-11090
121. Marti S et al (2008) Computational design of biological catalysts. Chem Soc Rev 37:2634-2643
122. Vieceli J, Muellegger J, Tehrani A (2006) Computer-assisted design of industrial enzymes. The resurgence of rational design and in silico mutagenesis. Ind Biotechnol 2:303-308
123. Gorke J, Srienc F, Kazlauskas R (2010) Toward advanced ionic liquids. Polar, enzyme-friendly solvents for biocatalysis. Biotechnol Bioprocess Eng 15:40-53
124. van Rantwijk F, Madeira Lau R, Sheldon RA (2003) Biocatalytic transformations in ionic liquids. Trends Biotechnol 21:131
125. Cantone S, Hanefeld U, Basso A (2007) Biocatalysis in non-conventional media-ionic liquids, supercritical fluids and the gas phase. Green Chem 9:954-971
126. Matsuda T, Harada T, Nakamura K (2005) Biocatalysis in super-critical CO2. Curr Org Chem 9:299
127. Matsuda T, Ohashi Y, Harada T, Yanagihara R, Nagasawa T, Nakamura K (2001) Conversion of pyrrole to pyrrole-2-carboxylate by cells of Bacillus megaterium in supercritical CO2. Chem Commun 21:2194-2195
128. Reetz MT, Wiesenhoefer W, Francio G, Leitner W (2002) Biocatalysis in ionic liquids: batchwise and continuous flow processes using supercritical carbon dioxide as the mobile phase. Chem Commun 9:992-993
129. Cheng HN, Gross RA (2008) Polymer biocatalysis and biomaterials: current trends and developments. In: Cheng HN, Gross RA (eds) Polymer biocatalysis and biomaterials II, ACS symposium series, vol 999, pp 1-20
130. Wohlgemuth R (2007) Interfacing biocatalysis and organic synthesis. J Chem Technol Biotechnol 82:1055-1062