메뉴 건너뛰기




Volumn 9, Issue 9, 2014, Pages

Analysis of the role of homology arms in gene-targeting vectors in human cells

Author keywords

[No Author keywords available]

Indexed keywords

HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE; DNA LIGASE (ATP); POLYDEOXYRIBONUCLEOTIDE SYNTHASE;

EID: 84907459051     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0108236     Document Type: Article
Times cited : (17)

References (33)
  • 1
    • 84934435281 scopus 로고    scopus 로고
    • Highly proficient gene targeting by homologous recombination in the human pre-B cell line nalm-6
    • Adachi N, Kurosawa A, Koyama H (2008) Highly proficient gene targeting by homologous recombination in the human pre-B cell line Nalm-6. Methods Mol Biol 435: 17-29.
    • (2008) Methods Mol Biol , vol.435 , pp. 17-29
    • Adachi, N.1    Kurosawa, A.2    Koyama, H.3
  • 2
    • 84901291667 scopus 로고    scopus 로고
    • The mechanism of gene targeting in human somatic cells
    • Kan Y, Ruis B, Lin S, Hendrickson EA (2014) The mechanism of gene targeting in human somatic cells. PLoS Genet 10: e1004251.
    • (2014) PLoS Genet , vol.10 , pp. e1004251
    • Kan, Y.1    Ruis, B.2    Lin, S.3    Hendrickson, E.A.4
  • 4
    • 38049115657 scopus 로고    scopus 로고
    • The mechanism of human nonhomologous DNA end joining
    • Lieber MR (2008) The mechanism of human nonhomologous DNA end joining. J Biol Chem 283: 1-5.
    • (2008) J Biol Chem , vol.283 , pp. 1-5
    • Lieber, M.R.1
  • 5
    • 33749529115 scopus 로고    scopus 로고
    • Nonhomologous chromosomal integration of foreign DNA is completely dependent on MUS-53 (human lig4 homolog) in neurospora
    • Ishibashi K, Suzuki K, Ando Y, Takakura C, Inoue H (2006) Nonhomologous chromosomal integration of foreign DNA is completely dependent on MUS-53 (human Lig4 homolog) in Neurospora. Proc Natl Acad Sci U S A 103: 14871-14876.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 14871-14876
    • Ishibashi, K.1    Suzuki, K.2    Ando, Y.3    Takakura, C.4    Inoue, H.5
  • 6
    • 4344691833 scopus 로고    scopus 로고
    • Highly efficient gene replacements in neurospora strains deficient for nonhomologous end-joining
    • Ninomiya Y, Suzuki K, Ishii C, Inoue H (2004) Highly efficient gene replacements in Neurospora strains deficient for nonhomologous end-joining. Proc Natl Acad Sci U S A 101: 12248-12253.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 12248-12253
    • Ninomiya, Y.1    Suzuki, K.2    Ishii, C.3    Inoue, H.4
  • 7
    • 56049086017 scopus 로고    scopus 로고
    • Impact of non-homologous end-joining deficiency on random and targeted DNA integration: Implications for gene targeting
    • Iiizumi S, Kurosawa A, So S, Ishii Y, Chikaraishi Y, et al. (2008) Impact of non-homologous end-joining deficiency on random and targeted DNA integration: implications for gene targeting. Nucleic Acids Res 36: 6333-6342.
    • (2008) Nucleic Acids Res , vol.36 , pp. 6333-6342
    • Iiizumi, S.1    Kurosawa, A.2    So, S.3    Ishii, Y.4    Chikaraishi, Y.5
  • 8
    • 47249150446 scopus 로고    scopus 로고
    • Ku70, an essential gene, modulates the frequency of rAAV-mediated gene targeting in human somatic cells
    • Fattah FJ, Lichter NF, Fattah KR, Oh S, Hendrickson EA (2008) Ku70, an essential gene, modulates the frequency of rAAV-mediated gene targeting in human somatic cells. Proc Natl Acad Sci U S A 105: 8703-8708.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 8703-8708
    • Fattah, F.J.1    Lichter, N.F.2    Fattah, K.R.3    Oh, S.4    Hendrickson, E.A.5
  • 9
    • 0035971074 scopus 로고    scopus 로고
    • Identification of a mutated DNA ligase IV gene in the X-ray-hypersensitive mutant SX10 of mouse FM3A cells
    • Sado K, Ayusawa D, Enomoto A, Suganuma T, Oshimura M, et al. (2001) Identification of a mutated DNA ligase IV gene in the X-ray-hypersensitive mutant SX10 of mouse FM3A cells. J Biol Chem 276: 9742-9748.
    • (2001) J Biol Chem , vol.276 , pp. 9742-9748
    • Sado, K.1    Ayusawa, D.2    Enomoto, A.3    Suganuma, T.4    Oshimura, M.5
  • 10
    • 0024441217 scopus 로고
    • Decreased stable transfection frequencies of six X-ray-sensitive CHO strains, all members of the xrs complementation group
    • Jeggo PA, Smith-Ravin J (1989) Decreased stable transfection frequencies of six X-ray-sensitive CHO strains, all members of the xrs complementation group. Mutat Res 218: 75-86.
    • (1989) Mutat Res , vol.218 , pp. 75-86
    • Jeggo, P.A.1    Smith-Ravin, J.2
  • 11
    • 0035834067 scopus 로고    scopus 로고
    • DNA ligase IV-deficient cells are more resistant to ionizing radiation in the absence of ku70: Implications for DNA double-strand break repair
    • Adachi N, Ishino T, Ishii Y, Takeda S, Koyama H (2001) DNA ligase IV-deficient cells are more resistant to ionizing radiation in the absence of Ku70: Implications for DNA double-strand break repair. Proc Natl Acad Sci U S A 98: 12109-12113.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 12109-12113
    • Adachi, N.1    Ishino, T.2    Ishii, Y.3    Takeda, S.4    Koyama, H.5
  • 12
    • 84876161358 scopus 로고    scopus 로고
    • Alternative end-joining mechanisms: A historical perspective
    • Decottignies A (2013) Alternative end-joining mechanisms: a historical perspective. Front Genet 4: 48.
    • (2013) Front Genet , vol.4 , pp. 48
    • Decottignies, A.1
  • 14
    • 84875484920 scopus 로고    scopus 로고
    • DNA ligases I and III cooperate in alternative non-homologous end-joining in vertebrates
    • Paul K, Wang M, Mladenov E, Bencsik-Theilen A, Bednar T, et al. (2013) DNA ligases I and III cooperate in alternative non-homologous end-joining in vertebrates. PLoS One 8: e59505.
    • (2013) PLoS One , vol.8 , pp. e59505
    • Paul, K.1    Wang, M.2    Mladenov, E.3    Bencsik-Theilen, A.4    Bednar, T.5
  • 15
    • 20144363082 scopus 로고    scopus 로고
    • DNA ligase III as a candidate component of backup pathways of nonhomologous end joining
    • Wang H, Rosidi B, Perrault R, Wang M, Zhang L, et al. (2005) DNA ligase III as a candidate component of backup pathways of nonhomologous end joining. Cancer Res 65: 4020-4030.
    • (2005) Cancer Res , vol.65 , pp. 4020-4030
    • Wang, H.1    Rosidi, B.2    Perrault, R.3    Wang, M.4    Zhang, L.5
  • 16
    • 84905370561 scopus 로고    scopus 로고
    • DNA ligase III and DNA ligase IV carry out genetically distinct forms of end joining in human somatic cells
    • in press
    • Oh S, Harvey A, Zimbric J, Wang Y, Nguyen T, et al. (2014) DNA ligase III and DNA ligase IV carry out genetically distinct forms of end joining in human somatic cells. DNA Repair (Amst), in press.
    • (2014) DNA Repair (Amst)
    • Oh, S.1    Harvey, A.2    Zimbric, J.3    Wang, Y.4    Nguyen, T.5
  • 17
    • 84877321963 scopus 로고    scopus 로고
    • Microhomology-mediated end joining and homologous recombination share the initial end resection step to repair DNA double-strand breaks in mammalian cells
    • Truong LN, Li Y, Shi LZ, Hwang PY, He J, et al. (2013) Microhomology-mediated End Joining and Homologous Recombination share the initial end resection step to repair DNA double-strand breaks in mammalian cells. Proc Natl Acad Sci U S A 110: 7720-7725.
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 7720-7725
    • Truong, L.N.1    Li, Y.2    Shi, L.Z.3    Hwang, P.Y.4    He, J.5
  • 18
    • 84907469627 scopus 로고    scopus 로고
    • Repair of accidental DNA double-strand breaks in the human genome and its relevance to vector DNA integration
    • Adachi N, Saito S, Kurosawa A (2013) Repair of accidental DNA double-strand breaks in the human genome and its relevance to vector DNA integration. Gene Technology 3: 1000e1107.
    • (2013) Gene Technology , vol.3 , pp. 1000e1107
    • Adachi, N.1    Saito, S.2    Kurosawa, A.3
  • 19
    • 84900298762 scopus 로고    scopus 로고
    • Non-homologous end joining often uses microhomology: Implications for alternative end joining
    • Pannunzio NR, Li S, Watanabe G, Lieber MR (2014) Non-homologous end joining often uses microhomology: Implications for alternative end joining. DNA Repair (Amst) 17: 74-80.
    • (2014) DNA Repair (Amst) , vol.17 , pp. 74-80
    • Pannunzio, N.R.1    Li, S.2    Watanabe, G.3    Lieber, M.R.4
  • 20
    • 84888330687 scopus 로고    scopus 로고
    • Alternative end-joining and classical nonhomologous end-joining pathways repair different types of double-strand breaks during class-switch recombination
    • Cortizas EM, Zahn A, Hajjar ME, Patenaude AM, Di Noia JM, et al. (2013) Alternative end-joining and classical nonhomologous end-joining pathways repair different types of double-strand breaks during class-switch recombination. J Immunol 191: 5751-5763.
    • (2013) J Immunol , vol.191 , pp. 5751-5763
    • Cortizas, E.M.1    Zahn, A.2    Hajjar, M.E.3    Patenaude, A.M.4    Di Noia, J.M.5
  • 21
    • 11244251788 scopus 로고    scopus 로고
    • Genetic interactions between BLM and DNA ligase IV in human cells
    • So S, Adachi N, Lieber MR, Koyama H (2004) Genetic interactions between BLM and DNA ligase IV in human cells. J Biol Chem 279: 55433-55442.
    • (2004) J Biol Chem , vol.279 , pp. 55433-55442
    • So, S.1    Adachi, N.2    Lieber, M.R.3    Koyama, H.4
  • 22
    • 77957235402 scopus 로고    scopus 로고
    • Synthesis-dependent microhomology-mediated end joining accounts for multiple types of repair junctions
    • Yu AM, McVey M (2010) Synthesis-dependent microhomology-mediated end joining accounts for multiple types of repair junctions. Nucleic Acids Res 38: 5706-5717.
    • (2010) Nucleic Acids Res , vol.38 , pp. 5706-5717
    • Yu, A.M.1    McVey, M.2
  • 23
    • 77950460776 scopus 로고    scopus 로고
    • Integration of exogenous DNA into mouse embryonic stem cell chromosomes shows preference into genes and frequent modification at junctions
    • Suzuki K, Ohbayashi F, Nikaido I, Okuda A, Takaki H, et al. (2010) Integration of exogenous DNA into mouse embryonic stem cell chromosomes shows preference into genes and frequent modification at junctions. Chromosome Res 18: 191-201.
    • (2010) Chromosome Res , vol.18 , pp. 191-201
    • Suzuki, K.1    Ohbayashi, F.2    Nikaido, I.3    Okuda, A.4    Takaki, H.5
  • 24
    • 48149108735 scopus 로고    scopus 로고
    • Mouse but not human embryonic stem cells are deficient in rejoining of ionizing radiation-induced DNA double-strand breaks
    • Bañuelos CA, Banath JP, MacPhail SH, Zhao J, Eaves CA, et al. (2008) Mouse but not human embryonic stem cells are deficient in rejoining of ionizing radiation-induced DNA double-strand breaks. DNA Repair (Amst) 7: 1471-1483.
    • (2008) DNA Repair (Amst) , vol.7 , pp. 1471-1483
    • Bañuelos, C.A.1    Banath, J.P.2    MacPhail, S.H.3    Zhao, J.4    Eaves, C.A.5
  • 25
    • 83855165105 scopus 로고    scopus 로고
    • Repetitive DNA and next-generation sequencing: Computational challenges and solutions
    • Treangen TJ, Salzberg SL (2012) Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nat Rev Genet 13: 36-46.
    • (2012) Nat Rev Genet , vol.13 , pp. 36-46
    • Treangen, T.J.1    Salzberg, S.L.2
  • 26
    • 34247344319 scopus 로고    scopus 로고
    • Retrotransposable elements and human disease
    • Callinan PA, Batzer MA (2006) Retrotransposable elements and human disease. Genome Dyn 1: 104-115.
    • (2006) Genome Dyn , vol.1 , pp. 104-115
    • Callinan, P.A.1    Batzer, M.A.2
  • 27
    • 34047223844 scopus 로고    scopus 로고
    • Simple one-week method to construct gene-targeting vectors: Application to production of human knockout cell lines
    • Iiizumi S, Nomura Y, So S, Uegaki K, Aoki K, et al. (2006) Simple one-week method to construct gene-targeting vectors: application to production of human knockout cell lines. Biotechniques 41: 311-316.
    • (2006) Biotechniques , vol.41 , pp. 311-316
    • Iiizumi, S.1    Nomura, Y.2    So, S.3    Uegaki, K.4    Aoki, K.5
  • 28
    • 84873639894 scopus 로고    scopus 로고
    • Human LIGIV is synthetically lethal with the loss of rad54b-dependent recombination and is required for certain chromosome fusion events induced by telomere dysfunction
    • Oh S, Wang Y, Zimbric J, Hendrickson EA (2013) Human LIGIV is synthetically lethal with the loss of Rad54B-dependent recombination and is required for certain chromosome fusion events induced by telomere dysfunction. Nucleic Acids Res 41: 1734-1749.
    • (2013) Nucleic Acids Res , vol.41 , pp. 1734-1749
    • Oh, S.1    Wang, Y.2    Zimbric, J.3    Hendrickson, E.A.4
  • 29
    • 0029589559 scopus 로고
    • Human repeat-mediated integration of selectable markers into somatic cell hybrids
    • Watson JE, Slorach EM, Maule J, Lawson D, Porteous DJ, et al. (1995) Human repeat-mediated integration of selectable markers into somatic cell hybrids. Genome Res 5: 444-452.
    • (1995) Genome Res , vol.5 , pp. 444-452
    • Watson, J.E.1    Slorach, E.M.2    Maule, J.3    Lawson, D.4    Porteous, D.J.5
  • 31
    • 84876877091 scopus 로고    scopus 로고
    • A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-ctip controls DNA repair pathway choice
    • Escribano-Diaz C, Orthwein A, Fradet-Turcotte A, Xing M, Young JT, et al. (2013) A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice. Mol Cell 49: 872-883.
    • (2013) Mol Cell , vol.49 , pp. 872-883
    • Escribano-Diaz, C.1    Orthwein, A.2    Fradet-Turcotte, A.3    Xing, M.4    Young, J.T.5
  • 32
    • 84875386413 scopus 로고    scopus 로고
    • Monitoring and robust induction of nephrogenic intermediate mesoderm from human pluripotent stem cells
    • Mae S, Shono A, Shiota F, Yasuno T, Kajiwara M, et al. (2013) Monitoring and robust induction of nephrogenic intermediate mesoderm from human pluripotent stem cells. Nat Commun 4: 1367.
    • (2013) Nat Commun , vol.4 , pp. 1367
    • Mae, S.1    Shono, A.2    Shiota, F.3    Yasuno, T.4    Kajiwara, M.5
  • 33
    • 33645151413 scopus 로고    scopus 로고
    • Enhanced gene targeting efficiency by siRNA that silences the expression of the bloom syndrome gene in human cells
    • So S, Nomura Y, Adachi N, Kobayashi Y, Hori T, et al. (2006) Enhanced gene targeting efficiency by siRNA that silences the expression of the Bloom syndrome gene in human cells. Genes Cells 11: 363-371.
    • (2006) Genes Cells , vol.11 , pp. 363-371
    • So, S.1    Nomura, Y.2    Adachi, N.3    Kobayashi, Y.4    Hori, T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.