메뉴 건너뛰기




Volumn 7, Issue 1, 2014, Pages

Dynamic changes in DNA modification states during late gestation male germ line development in the rat

Author keywords

5 carboxylcytosine; 5 formylcytosine; 5 hydroxymethylcytosine; 5 methylcytosine; DNA modification; Germ cells; Rat; Thymine DNA Glycosylase

Indexed keywords

5 CARBOXYLCYTOSINE; 5 FORMYLCYTOSINE; 5 HYDROXYMETHYLCYTOSINE; 5 METHYLCYTOSINE; CYTOSINE DERIVATIVE; THYMINE DNA GLYCOSYLASE; UNCLASSIFIED DRUG;

EID: 84907213298     PISSN: None     EISSN: 17568935     Source Type: Journal    
DOI: 10.1186/1756-8935-7-19     Document Type: Article
Times cited : (13)

References (64)
  • 2
    • 84875167169 scopus 로고    scopus 로고
    • Non-canonical functions of the DNA methylome in gene regulation
    • 23489368
    • Non-canonical functions of the DNA methylome in gene regulation. Reddington JP, Pennings S, Meehan RR, Biochem J 2013 451 13 23 10.1042/BJ20121585 23489368
    • (2013) Biochem J , vol.451 , pp. 13-23
    • Reddington, J.P.1    Pennings, S.2    Meehan, R.R.3
  • 3
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • 11782440
    • DNA methylation patterns and epigenetic memory. Bird A, Genes Dev 2002 16 6 21 10.1101/gad.947102 11782440
    • (2002) Genes Dev , vol.16 , pp. 6-21
    • Bird, A.1
  • 6
    • 81555195724 scopus 로고    scopus 로고
    • Nuclear reprogramming in mouse primordial germ cells: Epigenetic contribution
    • 21969835
    • Nuclear reprogramming in mouse primordial germ cells: epigenetic contribution. De Felici M, Stem Cells Int 2011 2011 425863 21969835
    • (2011) Stem Cells Int , vol.2011 , pp. 425863
    • De Felici, M.1
  • 7
    • 77954345408 scopus 로고    scopus 로고
    • Genome-wide reprogramming in the mouse germ line entails the base excision repair pathway
    • 20595612
    • Genome-wide reprogramming in the mouse germ line entails the base excision repair pathway. Hajkova P, Jeffries SJ, Lee C, Miller N, Jackson SP, Surani MA, Science 2010 329 78 82 10.1126/science.1187945 20595612
    • (2010) Science , vol.329 , pp. 78-82
    • Hajkova, P.1    Jeffries, S.J.2    Lee, C.3    Miller, N.4    Jackson, S.P.5    Surani, M.A.6
  • 8
    • 79960037025 scopus 로고    scopus 로고
    • Epigenetic reprogramming in the germline: Towards the ground state of the epigenome
    • 21727132
    • Epigenetic reprogramming in the germline: towards the ground state of the epigenome. Hajkova P, Philos Trans R Soc Lond B Biol Sci 2011 366 2266 2273 10.1098/rstb.2011.0042 21727132
    • (2011) Philos Trans R Soc Lond B Biol Sci , vol.366 , pp. 2266-2273
    • Hajkova, P.1
  • 9
    • 64149124530 scopus 로고    scopus 로고
    • Gonocytes, the forgotten cells of the germ cell lineage
    • Gonocytes, the forgotten cells of the germ cell lineage. Culty M, Birth Defects Research Part C 2009 87 1 26 10.1002/bdrc.20142
    • (2009) Birth Defects Research Part C , vol.87 , pp. 1-26
    • Culty, M.1
  • 10
    • 78649459828 scopus 로고    scopus 로고
    • Targets and dynamics of promoter DNA methylation during early mouse development
    • 21057502
    • Targets and dynamics of promoter DNA methylation during early mouse development. Borgel J, Guibert S, Li Y, Chiba H, Schubeler D, Sasaki H, Forne T, Weber M, Nat Genet 2010 42 1093 1100 10.1038/ng.708 21057502
    • (2010) Nat Genet , vol.42 , pp. 1093-1100
    • Borgel, J.1    Guibert, S.2    Li, Y.3    Chiba, H.4    Schubeler, D.5    Sasaki, H.6    Forne, T.7    Weber, M.8
  • 12
    • 51649129596 scopus 로고    scopus 로고
    • Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors
    • 18514006
    • Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors. Mohn F, Weber M, Rebhan M, Roloff TC, Richter J, Stadler MB, Bibel M, Schubeler D, Mol Cell 2008 30 755 766 10.1016/j.molcel.2008.05.007 18514006
    • (2008) Mol Cell , vol.30 , pp. 755-766
    • Mohn, F.1    Weber, M.2    Rebhan, M.3    Roloff, T.C.4    Richter, J.5    Stadler, M.B.6    Bibel, M.7    Schubeler, D.8
  • 13
    • 84872770694 scopus 로고    scopus 로고
    • Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine
    • 23223451
    • Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine. Hackett JA, Sengupta R, Zylicz JJ, Murakami K, Lee C, Down TA, Surani MA, Science 2013 339 448 452 10.1126/science.1229277 23223451
    • (2013) Science , vol.339 , pp. 448-452
    • Hackett, J.A.1    Sengupta, R.2    Zylicz, J.J.3    Murakami, K.4    Lee, C.5    Down, T.A.6    Surani, M.A.7
  • 15
    • 84859519339 scopus 로고    scopus 로고
    • Global profiling of DNA methylation erasure in mouse primordial germ cells
    • 22357612
    • Global profiling of DNA methylation erasure in mouse primordial germ cells. Guibert S, Forne T, Weber M, Genome Res 2012 22 633 641 10.1101/gr.130997.111 22357612
    • (2012) Genome Res , vol.22 , pp. 633-641
    • Guibert, S.1    Forne, T.2    Weber, M.3
  • 16
    • 84899423389 scopus 로고    scopus 로고
    • Defending the genome from the enemy within: Mechanisms of retrotransposon suppression in the mouse germline
    • 24045705
    • Defending the genome from the enemy within: mechanisms of retrotransposon suppression in the mouse germline. Crichton J, Dunican D, MacLennan M, Meehan R, Adams I, Cell Mol Life Sci 2014 71 1581 1605 10.1007/s00018-013-1468-0 24045705
    • (2014) Cell Mol Life Sci , vol.71 , pp. 1581-1605
    • Crichton, J.1    Dunican, D.2    Maclennan, M.3    Meehan, R.4    Adams, I.5
  • 17
    • 0037710466 scopus 로고    scopus 로고
    • Methylation dynamics of repetitive DNA elements in the mouse germ cell lineage
    • 12837272
    • Methylation dynamics of repetitive DNA elements in the mouse germ cell lineage. Lees-Murdock DJ, De Felici M, Walsh CP, Genomics 2003 82 230 237 10.1016/S0888-7543(03)00105-8 12837272
    • (2003) Genomics , vol.82 , pp. 230-237
    • Lees-Murdock, D.J.1    De Felici, M.2    Walsh, C.P.3
  • 18
    • 7944221225 scopus 로고    scopus 로고
    • Timing of establishment of paternal methylation imprints in the mouse
    • 15533712
    • Timing of establishment of paternal methylation imprints in the mouse. Li JY, Lees-Murdock DJ, Xu GL, Walsh CP, Genomics 2004 84 952 960 10.1016/j.ygeno.2004.08.012 15533712
    • (2004) Genomics , vol.84 , pp. 952-960
    • Li, J.Y.1    Lees-Murdock, D.J.2    Xu, G.L.3    Walsh, C.P.4
  • 21
    • 0036205914 scopus 로고    scopus 로고
    • Methylation dynamics of imprinted genes in mouse germ cells
    • 11944985
    • Methylation dynamics of imprinted genes in mouse germ cells. Lucifero D, Mertineit C, Clarke HJ, Bestor TH, Trasler JM, Genomics 2002 79 530 538 10.1006/geno.2002.6732 11944985
    • (2002) Genomics , vol.79 , pp. 530-538
    • Lucifero, D.1    Mertineit, C.2    Clarke, H.J.3    Bestor, T.H.4    Trasler, J.M.5
  • 24
    • 3543097592 scopus 로고    scopus 로고
    • DNA methylation in the preimplantation embryo: The differing stories of the mouse and sheep
    • 15271444
    • DNA methylation in the preimplantation embryo: the differing stories of the mouse and sheep. Young LE, Beaujean N, Anim Reprod Sci 2004 82 61 78 15271444
    • (2004) Anim Reprod Sci , vol.82 , pp. 61-78
    • Young, L.E.1    Beaujean, N.2
  • 26
    • 77956189495 scopus 로고    scopus 로고
    • Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
    • 20639862
    • Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Ito S, D'Alessio AC, Taranova OV, Hong K, Sowers LC, Zhang Y, Nature 2010 466 1129 1133 10.1038/nature09303 20639862
    • (2010) Nature , vol.466 , pp. 1129-1133
    • Ito, S.1    D'Alessio, A.C.2    Taranova, O.V.3    Hong, K.4    Sowers, L.C.5    Zhang, Y.6
  • 29
    • 80052461558 scopus 로고    scopus 로고
    • Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
    • 21778364
    • Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Ito S, Shen L, Dai Q, Wu SC, Collins LB, Swenberg JA, He C, Zhang Y, Science 2011 333 1300 1303 10.1126/science.1210597 21778364
    • (2011) Science , vol.333 , pp. 1300-1303
    • Ito, S.1    Shen, L.2    Dai, Q.3    Wu, S.C.4    Collins, L.B.5    Swenberg, J.A.6    He, C.7    Zhang, Y.8
  • 31
    • 79959209733 scopus 로고    scopus 로고
    • 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells
    • 21689397
    • 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells. Stroud H, Feng S, Morey Kinney S, Pradhan S, Jacobsen SE, Genome Biol 2011 12 54 10.1186/gb-2011-12-6-r54 21689397
    • (2011) Genome Biol , vol.12 , pp. 1854
    • Stroud, H.1    Feng, S.2    Morey Kinney, S.3    Pradhan, S.4    Jacobsen, S.E.5
  • 34
    • 84897061863 scopus 로고    scopus 로고
    • Base-resolution maps of 5-methylcytosine and 5-hydroxymethylcytosine in Dahl S rats: Effect of salt and genomic sequence
    • 24420542
    • Base-resolution maps of 5-methylcytosine and 5-hydroxymethylcytosine in Dahl S rats: Effect of salt and genomic sequence. Liu Y, Liu P, Yang C, Cowley AW, Liang M, Hypertension 2014 63 827 838 10.1161/HYPERTENSIONAHA.113.02637 24420542
    • (2014) Hypertension , vol.63 , pp. 827-838
    • Liu, Y.1    Liu, P.2    Yang, C.3    Cowley, A.W.4    Liang, M.5
  • 35
    • 84864722177 scopus 로고    scopus 로고
    • 5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription
    • 22820989
    • 5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription. Kellinger MW, Song CX, Chong J, Lu XY, He C, Wang D, Nat Struct Mol Biol 2012 19 831 833 10.1038/nsmb.2346 22820989
    • (2012) Nat Struct Mol Biol , vol.19 , pp. 831-833
    • Kellinger, M.W.1    Song, C.X.2    Chong, J.3    Lu, X.Y.4    He, C.5    Wang, D.6
  • 36
    • 84857147244 scopus 로고    scopus 로고
    • Semi-quantitative immunohistochemical detection of 5-hydroxymethyl-cytosine reveals conservation of its tissue distribution between amphibians and mammals
    • 22395462
    • Semi-quantitative immunohistochemical detection of 5-hydroxymethyl-cytosine reveals conservation of its tissue distribution between amphibians and mammals. Almeida RD, Sottile V, Loose M, De Sousa PA, Johnson AD, Ruzov A, Epigenetics 2012 7 137 140 10.4161/epi.7.2.18949 22395462
    • (2012) Epigenetics , vol.7 , pp. 137-140
    • Almeida, R.D.1    Sottile, V.2    Loose, M.3    De Sousa, P.A.4    Johnson, A.D.5    Ruzov, A.6
  • 37
    • 82655187105 scopus 로고    scopus 로고
    • Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development
    • 22124233
    • Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development. Inoue A, Shen L, Dai Q, He C, Zhang Y, Cell Res 2011 21 1670 1676 10.1038/cr.2011.189 22124233
    • (2011) Cell Res , vol.21 , pp. 1670-1676
    • Inoue, A.1    Shen, L.2    Dai, Q.3    He, C.4    Zhang, Y.5
  • 38
    • 79952763586 scopus 로고    scopus 로고
    • Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine
    • 21321204
    • Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine. Iqbal K, Jin SG, Pfeifer GP, Szabo PE, Proc Natl Acad Sci U S A 2011 108 3642 3647 10.1073/pnas.1014033108 21321204
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 3642-3647
    • Iqbal, K.1    Jin, S.G.2    Pfeifer, G.P.3    Szabo, P.E.4
  • 40
    • 80054097425 scopus 로고    scopus 로고
    • Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos
    • 21940858
    • Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos. Inoue A, Zhang Y, Science 2011 334 194 10.1126/science.1212483 21940858
    • (2011) Science , vol.334 , pp. 194
    • Inoue, A.1    Zhang, Y.2
  • 41
    • 84887354987 scopus 로고    scopus 로고
    • Active demethylation in mouse zygotes involves cytosine deamination and base excision repair
    • 24279473
    • Active demethylation in mouse zygotes involves cytosine deamination and base excision repair. Santos F, Peat J, Burgess H, Rada C, Reik W, Dean W, Epigenetics Chromatin 2013 6 39 10.1186/1756-8935-6-39 24279473
    • (2013) Epigenetics Chromatin , vol.6 , pp. 39
    • Santos, F.1    Peat, J.2    Burgess, H.3    Rada, C.4    Reik, W.5    Dean, W.6
  • 42
    • 84874655393 scopus 로고    scopus 로고
    • Dynamics of 5-methylcytosine and 5-hydroxymethylcytosine during germ cell reprogramming
    • 23399596
    • Dynamics of 5-methylcytosine and 5-hydroxymethylcytosine during germ cell reprogramming. Yamaguchi S, Hong K, Liu R, Inoue A, Shen L, Zhang K, Zhang Y, Cell Res 2013 23 329 339 10.1038/cr.2013.22 23399596
    • (2013) Cell Res , vol.23 , pp. 329-339
    • Yamaguchi, S.1    Hong, K.2    Liu, R.3    Inoue, A.4    Shen, L.5    Zhang, K.6    Zhang, Y.7
  • 43
    • 84865061978 scopus 로고    scopus 로고
    • Genome-wide distribution of 5-formylcytosine in ES cells is associated with transcription and depends on thymine DNA glycosylase
    • 22902005
    • Genome-wide distribution of 5-formylcytosine in ES cells is associated with transcription and depends on thymine DNA glycosylase. Raiber E-A, Beraldi D, Ficz G, Burgess H, Branco M, Murat P, Oxley D, Booth M, Reik W, Balasubramanian S, Genome Biol 2012 13 69 10.1186/gb-2012-13-8-r69 22902005
    • (2012) Genome Biol , vol.13 , pp. 1869
    • Raiber, E.-A.1    Beraldi, D.2    Ficz, G.3    Burgess, H.4    Branco, M.5    Murat, P.6    Oxley, D.7    Booth, M.8    Reik, W.9    Balasubramanian, S.10
  • 47
    • 80053917872 scopus 로고    scopus 로고
    • Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: Potential implications for active demethylation of CpG sites
    • 21862836
    • Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites. Maiti A, Drohat AC, J Biol Chem 2011 286 35334 35338 10.1074/jbc.C111.284620 21862836
    • (2011) J Biol Chem , vol.286 , pp. 35334-35338
    • Maiti, A.1    Drohat, A.C.2
  • 48
    • 84876946045 scopus 로고    scopus 로고
    • Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics
    • 23602152
    • Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics. Shen L, Wu H, Diep D, Yamaguchi S, D'Alessio Ana C, Fung H-L, Zhang K, Zhang Y, Cell 2013 153 692 706 10.1016/j.cell.2013.04.002 23602152
    • (2013) Cell , vol.153 , pp. 692-706
    • Shen, L.1    Wu, H.2    Diep, D.3    Yamaguchi, S.4    D'Alessio Ana, C.5    Fung, H.-L.6    Zhang, K.7    Zhang, Y.8
  • 49
    • 84859002909 scopus 로고    scopus 로고
    • Parallel mechanisms of epigenetic reprogramming in the germline
    • 22386917
    • Parallel mechanisms of epigenetic reprogramming in the germline. Hackett JA, Zylicz JJ, Surani MA, Trends Genet 2012 28 164 174 10.1016/j.tig.2012.01.005 22386917
    • (2012) Trends Genet , vol.28 , pp. 164-174
    • Hackett, J.A.1    Zylicz, J.J.2    Surani, M.A.3
  • 50
    • 77249148019 scopus 로고    scopus 로고
    • Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency
    • 20098412
    • Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Popp C, Dean W, Feng S, Cokus SJ, Andrews S, Pellegrini M, Jacobsen SE, Reik W, Nature 2010 463 1101 1105 10.1038/nature08829 20098412
    • (2010) Nature , vol.463 , pp. 1101-1105
    • Popp, C.1    Dean, W.2    Feng, S.3    Cokus, S.J.4    Andrews, S.5    Pellegrini, M.6    Jacobsen, S.E.7    Reik, W.8
  • 51
    • 0142123105 scopus 로고    scopus 로고
    • Reprogramming of primordial germ cells begins before migration into the genital ridge, making these cells inadequate donors for reproductive cloning
    • 14506296
    • Reprogramming of primordial germ cells begins before migration into the genital ridge, making these cells inadequate donors for reproductive cloning. Yamazaki Y, Mann MR, Lee SS, Marh J, McCarrey JR, Yanagimachi R, Bartolomei MS, Proc Natl Acad Sci U S A 2003 100 12207 12212 10.1073/pnas.2035119100 14506296
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 12207-12212
    • Yamazaki, Y.1    Mann, M.R.2    Lee, S.S.3    Marh, J.4    McCarrey, J.R.5    Yanagimachi, R.6    Bartolomei, M.S.7
  • 52
    • 0026740497 scopus 로고
    • Developmental pattern of gene-specific DNA methylation in the mouse embryo and germ line
    • Developmental pattern of gene-specific DNA methylation in the mouse embryo and germ line. Kafri T, Ariel M, Brandeis M, Shemer R, Urven L, McCarrey J, Cedar H, Razin A, Genes Dev 1992 6 705 714 10.1101/gad.6.5.705 1577268
    • (1992) Genes Dev , vol.6 , pp. 705-714
    • Kafri, T.1    Ariel, M.2    Brandeis, M.3    Shemer, R.4    Urven, L.5    McCarrey, J.6    Cedar, H.7    Razin, A.8
  • 53
  • 55
  • 58
    • 84861665776 scopus 로고    scopus 로고
    • 5-methylcytosine and 5-hydroxymethylcytosine spatiotemporal profiles in the mouse zygote
    • 22693592
    • 5-methylcytosine and 5-hydroxymethylcytosine spatiotemporal profiles in the mouse zygote. Salvaing J, Aguirre-Lavin T, Boulesteix C, Lehmann G, Debey P, Beaujean N, PLoS One 2012 7 38156 10.1371/journal.pone.0038156 22693592
    • (2012) PLoS One , vol.7 , pp. 538156
    • Salvaing, J.1    Aguirre-Lavin, T.2    Boulesteix, C.3    Lehmann, G.4    Debey, P.5    Beaujean, N.6
  • 59
    • 81055136660 scopus 로고    scopus 로고
    • Multigenerational programming in the glucocorticoid programmed rat is associated with generation-specific and parent of origin effects
    • 22086116
    • Multigenerational programming in the glucocorticoid programmed rat is associated with generation-specific and parent of origin effects. Drake AJ, Liu L, Kerrigan D, Meehan RR, Seckl JR, Epigenetics 2011 6 1334 1343 10.4161/epi.6.11.17942 22086116
    • (2011) Epigenetics , vol.6 , pp. 1334-1343
    • Drake, A.J.1    Liu, L.2    Kerrigan, D.3    Meehan, R.R.4    Seckl, J.R.5
  • 60
    • 11144310595 scopus 로고    scopus 로고
    • Intergenerational consequences of fetal programming by in utero exposure to glucocorticoids in rats
    • Intergenerational consequences of fetal programming by in utero exposure to glucocorticoids in rats. Drake AJ, Walker BR, Seckl JR, Am J Physiol 2005 288 34 R38
    • (2005) Am J Physiol , vol.288 , pp. 1834-R38
    • Drake, A.J.1    Walker, B.R.2    Seckl, J.R.3
  • 62
    • 77950609149 scopus 로고    scopus 로고
    • Intergenerational transmission of programmed effects: Public health consequences
    • 20005734
    • Intergenerational transmission of programmed effects: public health consequences. Drake AJ, Liu L, Trends Endocrinol Metab 2010 21 206 213 10.1016/j.tem.2009.11.006 20005734
    • (2010) Trends Endocrinol Metab , vol.21 , pp. 206-213
    • Drake, A.J.1    Liu, L.2
  • 63
    • 78650061153 scopus 로고    scopus 로고
    • Transgenerational epigenetic inheritance: More questions than answers
    • 21041414
    • Transgenerational epigenetic inheritance: more questions than answers. Daxinger L, Whitelaw E, Genome Res 2010 20 1623 1628 10.1101/gr.106138.110 21041414
    • (2010) Genome Res , vol.20 , pp. 1623-1628
    • Daxinger, L.1    Whitelaw, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.