-
1
-
-
84865677292
-
-
Chapter 1, John Wiley & Sons Ltd. New York.
-
Henderson, A. S. and Jorm, A. F. (2002) Dementia, Chapter 1, John Wiley & Sons Ltd., New York.
-
(2002)
Dementia
-
-
Henderson, A.S.1
Jorm, A.F.2
-
2
-
-
0037135111
-
Medicine - The amyloid hypothesis of Alzheimer"s disease: Progress and problems on the road to therapeutics
-
Hardy, J. and Selkoe, D. J. (2002) Medicine-The amyloid hypothesis of Alzheimer"s disease: Progress and problems on the road to therapeutics Science 297, 353-356
-
(2002)
Science
, vol.297
, pp. 353-356
-
-
Hardy, J.1
Selkoe, D.J.2
-
3
-
-
4344580888
-
Strategies for disease modification in Alzheimer"s disease
-
Citron, M. (2004) Strategies for disease modification in Alzheimer"s disease Nat. Rev. Neurosci. 5, 677-685
-
(2004)
Nat. Rev. Neurosci.
, vol.5
, pp. 677-685
-
-
Citron, M.1
-
4
-
-
77649202326
-
Protein aggregation diseases: Pathogenicity and therapeutic perspectives
-
Aguzzi, A. and OConnor, T. (2010) Protein aggregation diseases: pathogenicity and therapeutic perspectives Nat. Rev. Drug Discovery 9, 237-248
-
(2010)
Nat. Rev. Drug Discovery
, vol.9
, pp. 237-248
-
-
Aguzzi, A.1
Oconnor, T.2
-
5
-
-
0032888131
-
Soluble amyloid β peptide concentration as a predictor of synaptic change in Alzheimer"s disease
-
Lue, L. F., Kou, Y. M., and Roher, A. E. (1999) Soluble amyloid β peptide concentration as a predictor of synaptic change in Alzheimer"s disease Am. J. Pathol. 155, 853-862
-
(1999)
Am. J. Pathol.
, vol.155
, pp. 853-862
-
-
Lue, L.F.1
Kou, Y.M.2
Roher, A.E.3
-
6
-
-
75449102536
-
Mechanisms of disease Alzheimer"s disease
-
Querfurth, H. W. and Laferla, F. M. (2010) Mechanisms of disease Alzheimer"s disease N. Engl. J. Med. 362, 329-344
-
(2010)
N. Engl. J. Med.
, vol.362
, pp. 329-344
-
-
Querfurth, H.W.1
Laferla, F.M.2
-
7
-
-
3042857903
-
Alzheimer"s Disease
-
Cummings, J. L. (2004) Alzheimer"s Disease N. Engl. J. Med. 351, 56-67
-
(2004)
N. Engl. J. Med.
, vol.351
, pp. 56-67
-
-
Cummings, J.L.1
-
8
-
-
0242668337
-
Common structure of soluble amyloid oligomers implies common mechanism of pathogenesis
-
Kayed, R., Head, E., Thompson, J. L., McIntire, T. M., Milton, S. C., Cotman, C. W., and Glabe, C. G. (2003) Common structure of soluble amyloid oligomers implies common mechanism of pathogenesis Science 300, 486-489
-
(2003)
Science
, vol.300
, pp. 486-489
-
-
Kayed, R.1
Head, E.2
Thompson, J.L.3
McIntire, T.M.4
Milton, S.C.5
Cotman, C.W.6
Glabe, C.G.7
-
9
-
-
0037551741
-
Protofibrils, pores, fibrils, and neurodegeneration: Separating the responsible protein aggregates from the innocent bystanders
-
Caughey, B. and Lansbury, P. T. (2003) Protofibrils, pores, fibrils, and neurodegeneration: Separating the responsible protein aggregates from the innocent bystanders Annu. Rev. Neurosci. 26, 267-298
-
(2003)
Annu. Rev. Neurosci.
, vol.26
, pp. 267-298
-
-
Caughey, B.1
Lansbury, P.T.2
-
10
-
-
34248190279
-
Aβ oligomers - A decade of discovery
-
Walsh, D. M. and Selkoe, D. J. (2007) Aβ oligomers-A decade of discovery J. Neurochem. 101, 1172-1184
-
(2007)
J. Neurochem.
, vol.101
, pp. 1172-1184
-
-
Walsh, D.M.1
Selkoe, D.J.2
-
11
-
-
66149094245
-
Targeting the early steps of Aβ16-22 protofibril disassembly by N-methylated inhibitors: A numerical study
-
Chebaro, Y. and Derreumaux, P. (2009) Targeting the early steps of Aβ16-22 protofibril disassembly by N-methylated inhibitors: A numerical study Proteins 75, 442-452
-
(2009)
Proteins
, vol.75
, pp. 442-452
-
-
Chebaro, Y.1
Derreumaux, P.2
-
12
-
-
56849108519
-
The Alzheimer beta-Amyloid (A beta(1-39)) dimer in an implicit solvent
-
Anand, P., Nandel, F. S., and Hansmann, U. H. E. (2008) The Alzheimer beta-Amyloid (A beta(1-39)) dimer in an implicit solvent J. Chem. Phys. 129, 195102
-
(2008)
J. Chem. Phys.
, vol.129
, pp. 195102
-
-
Anand, P.1
Nandel, F.S.2
Hansmann, U.H.E.3
-
13
-
-
84864187173
-
Structure and dynamics of amyloid-beta segmental polymorphisms
-
Berhanu, W. M. and Hansmann, U. H. E. (2012) Structure and dynamics of amyloid-beta segmental polymorphisms PLoS One 7, e41479
-
(2012)
PLoS One
, vol.7
, pp. 41479
-
-
Berhanu, W.M.1
Hansmann, U.H.E.2
-
14
-
-
77950825396
-
Molecular structures of quiescently grown and brain-derived polymorphic fibrils of the Alzheimer amyloid A beta(9-40) peptide: A comparison to agitated fibrils
-
Wu, C., Bowers, M. T., and Shea, J. E. (2010) Molecular structures of quiescently grown and brain-derived polymorphic fibrils of the Alzheimer amyloid A beta(9-40) peptide: A comparison to agitated fibrils PloS Comput. Biol. 6, e1000693
-
(2010)
PloS Comput. Biol.
, vol.6
, pp. 1000693
-
-
Wu, C.1
Bowers, M.T.2
Shea, J.E.3
-
15
-
-
67849106670
-
Amyloid-beta protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer"s disease
-
Bernstein, S. L., Dupuis, N. F., Lazo, N. D., Wyttenbach, T., Condron, M. M., Bitan, G., Teplow, D. B., Shea, J. E., Ruotolo, B. T., Robinson, C. V., and Bowers, M. T. (2009) Amyloid-beta protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer"s disease Nat. Chem. 1, 326-331
-
(2009)
Nat. Chem.
, vol.1
, pp. 326-331
-
-
Bernstein, S.L.1
Dupuis, N.F.2
Lazo, N.D.3
Wyttenbach, T.4
Condron, M.M.5
Bitan, G.6
Teplow, D.B.7
Shea, J.E.8
Ruotolo, B.T.9
Robinson, C.V.10
Bowers, M.T.11
-
16
-
-
0026879650
-
Presenil dementia and cerebral haemorrhage linked to a mutation at codon 692 of the β-Amyloid precursor protein gene
-
Hendriks, L., van Duijin, C. M., Cras, P., Cruts, M., Hul, W. V., van Harskamp, F., Warren, A., McInnis, M. G., Antoarakis, S. E., Martin, J.-J., Hofman, A., and Broekhoven, C. V. (1992) Presenil dementia and cerebral haemorrhage linked to a mutation at codon 692 of the β-Amyloid precursor protein gene Nat. Genet. 1, 218-221
-
(1992)
Nat. Genet.
, vol.1
, pp. 218-221
-
-
Hendriks, L.1
Van Duijin, C.M.2
Cras, P.3
Cruts, M.4
Hul, W.V.5
Van Harskamp, F.6
Warren, A.7
McInnis, M.G.8
Antoarakis, S.E.9
Martin, J.-J.10
Hofman, A.11
Broekhoven, C.V.12
-
17
-
-
0025296269
-
Mutation of the Alzheimer"s disease amyloid gene in hereditary cerebral hemorrhage, Dutch type
-
Levy, E., Carman, M. D., Fernandez-Madrid, I. J., Power, M. D., Lieberburg, I., van Duinen, S. G., Bots, G. T. A. M., Luyendijk, W., and Frangione, B. (1990) Mutation of the Alzheimer"s disease amyloid gene in hereditary cerebral hemorrhage, Dutch type Science 1, 1124-1126
-
(1990)
Science
, vol.1
, pp. 1124-1126
-
-
Levy, E.1
Carman, M.D.2
Fernandez-Madrid, I.J.3
Power, M.D.4
Lieberburg, I.5
Van Duinen, S.G.6
Bots, G.T.A.M.7
Luyendijk, W.8
Frangione, B.9
-
18
-
-
0000171546
-
An Italian type of HCHWA
-
Bugiani, O., Padovani, A., Magoni, M., Andora, G., Sgarzi, M., Savoiardo, M., Bizzi, A., Giaccone, G., Rossi, G., and Tagliavini, F. (1998) An Italian type of HCHWA Neurobiol. Aging 19, S238
-
(1998)
Neurobiol. Aging
, vol.19
, pp. 238
-
-
Bugiani, O.1
Padovani, A.2
Magoni, M.3
Andora, G.4
Sgarzi, M.5
Savoiardo, M.6
Bizzi, A.7
Giaccone, G.8
Rossi, G.9
Tagliavini, F.10
-
19
-
-
0026733343
-
Linkage and mutational analysis of familial Alzheimer disease kindreds for the APP gene region
-
Kamino, K. 1992, Linkage and mutational analysis of familial Alzheimer disease kindreds for the APP gene region Am. J. Hum. Genet. 51, 998-1014
-
(1992)
Am. J. Hum. Genet.
, vol.51
, pp. 998-1014
-
-
Kamino, K.1
-
20
-
-
0034982951
-
Novel amyloid precursor protein mutation in an Iowa family with dementia and severe cerebral amyloid angiopathy
-
Grabowski, T. J., Cho, H. S., Vonsattel, J. P., Rebeck, G. W., and Greenberg, S. M. (2001) Novel amyloid precursor protein mutation in an Iowa family with dementia and severe cerebral amyloid angiopathy Ann. Nerol. 49, 697-705
-
(2001)
Ann. Nerol.
, vol.49
, pp. 697-705
-
-
Grabowski, T.J.1
Cho, H.S.2
Vonsattel, J.P.3
Rebeck, G.W.4
Greenberg, S.M.5
-
21
-
-
41749096713
-
A new amyloid beta variant favoring oligomerization in Alzheimer"s-type dementia
-
Tomiyama, T., Nagata, T., Shimada, H., Teraoka, R., Fukushima, A., Kanemitsu, H., Takuma, H., Kuwano, R., Imagawa, M., Ataka, S., Wada, Y., Yoshioka, E., Nishizaki, T., Watanabe, Y., and Mori, H. (2008) A new amyloid beta variant favoring oligomerization in Alzheimer"s-type dementia Ann. Neurol. 63, 377-387
-
(2008)
Ann. Neurol.
, vol.63
, pp. 377-387
-
-
Tomiyama, T.1
Nagata, T.2
Shimada, H.3
Teraoka, R.4
Fukushima, A.5
Kanemitsu, H.6
Takuma, H.7
Kuwano, R.8
Imagawa, M.9
Ataka, S.10
Wada, Y.11
Yoshioka, E.12
Nishizaki, T.13
Watanabe, Y.14
Mori, H.15
-
22
-
-
0034901811
-
Probing the origins of increased activity of the E22Q "dutch" mutant Alzheimer"s beta-Amyloid peptide
-
Massi, F. and Straub, J. E. (2001) Probing the origins of increased activity of the E22Q "Dutch" mutant Alzheimer"s beta-Amyloid peptide Biophys. J. 81, 697-709
-
(2001)
Biophys. J.
, vol.81
, pp. 697-709
-
-
Massi, F.1
Straub, J.E.2
-
25
-
-
33751218920
-
Impact of the mutation A21G (Flemish variant) on Alzheimer"s β-Amyloid dimers by molecular dynamics simulations
-
Huet, A. and Derreumaux, P. (2006) Impact of the mutation A21G (Flemish variant) on Alzheimer"s β-Amyloid dimers by molecular dynamics simulations Biophys. J. 91, 3829-3840
-
(2006)
Biophys. J.
, vol.91
, pp. 3829-3840
-
-
Huet, A.1
Derreumaux, P.2
-
26
-
-
84874091627
-
The structures of the E22Δ mutant-type amyloid-β alloforms and the impact of E22Δ mutation on the structures of the wild-type amyloid-β alloforms
-
Coskuner, O., Wise-Scira, O., Perry, G., and Kitahara, T. (2013) The structures of the E22Δ mutant-type amyloid-β alloforms and the impact of E22Δ mutation on the structures of the wild-type amyloid-β alloforms ACS Chem. Neurosci. 4, 310-320
-
(2013)
ACS Chem. Neurosci.
, vol.4
, pp. 310-320
-
-
Coskuner, O.1
Wise-Scira, O.2
Perry, G.3
Kitahara, T.4
-
27
-
-
77955790562
-
Comparing the folding free-energy landscapes of Aβ42 variants with different aggregation properties
-
Mitternacht, S., Staneva, I., Hard, T., and Irback, A. (2010) Comparing the folding free-energy landscapes of Aβ42 variants with different aggregation properties Proteins 78, 2600-2608
-
(2010)
Proteins
, vol.78
, pp. 2600-2608
-
-
Mitternacht, S.1
Staneva, I.2
Hard, T.3
Irback, A.4
-
28
-
-
79958710594
-
Monte Carlo study of the formation and conformational properties of dimers of A beta 42 variants
-
Mitternacht, S., Staneva, I., Hard, T., and Irback, A. (2011) Monte Carlo study of the formation and conformational properties of dimers of A beta 42 variants J. Mol. Biol. 410, 357-367
-
(2011)
J. Mol. Biol.
, vol.410
, pp. 357-367
-
-
Mitternacht, S.1
Staneva, I.2
Hard, T.3
Irback, A.4
-
29
-
-
30744433878
-
Experimental constraints on quaternary structure in Alzheimer"s β-Amyloid Fibrils
-
Petkova, A. T., Yau, W. M., and Tycko, R. (2006) Experimental constraints on quaternary structure in Alzheimer"s β-Amyloid Fibrils Biochemistry 45, 498-512
-
(2006)
Biochemistry
, vol.45
, pp. 498-512
-
-
Petkova, A.T.1
Yau, W.M.2
Tycko, R.3
-
30
-
-
57449091884
-
Molecular structural basis for polymorphism in Alzheimer"s β-Amyloid fibrils
-
Paravastu, A. K., Leapman, R. D., Yau, W. M., and Tycko, R. (2008) Molecular structural basis for polymorphism in Alzheimer"s β-Amyloid fibrils Proc. Natl. Acad. Sci. U.S.A. 105, 18349-18354
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 18349-18354
-
-
Paravastu, A.K.1
Leapman, R.D.2
Yau, W.M.3
Tycko, R.4
-
31
-
-
28444442999
-
3D structure of Alzheimer"s amyloid-β(1-42) fibrils
-
Luhrs, T., Ritter, C., Adrian, M., Riek-Loher, D., Bohrmann, B., Doeli, H., Schubert, D., and Riek, R. (2005) 3D structure of Alzheimer"s amyloid-β(1-42) fibrils Proc. Natl. Acad. Sci. U.S.A. 102, 17342-17347
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 17342-17347
-
-
Luhrs, T.1
Ritter, C.2
Adrian, M.3
Riek-Loher, D.4
Bohrmann, B.5
Doeli, H.6
Schubert, D.7
Riek, R.8
-
32
-
-
80053554845
-
A new structural model of A beta(40) fibrils
-
Bertini, I., Gonnelli, L., Luchinat, C., Mao, J. F., and Nesi, A. (2011) A new structural model of A beta(40) fibrils J. Am. Chem. Soc. 133, 16013-16022
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 16013-16022
-
-
Bertini, I.1
Gonnelli, L.2
Luchinat, C.3
Mao, J.F.4
Nesi, A.5
-
33
-
-
84855835096
-
Dynamics of amyloid beta fibrils revealed by solid-state NMR
-
Scheidt, H. A., Morgado, I., Rothemund, S., and Huster, D. (2012) Dynamics of amyloid beta fibrils revealed by solid-state NMR J. Biol. Chem. 287, 2017-2021
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 2017-2021
-
-
Scheidt, H.A.1
Morgado, I.2
Rothemund, S.3
Huster, D.4
-
34
-
-
84884217594
-
Molecular structure of beta-Amyloid fibrils in Alzheimer"s disease brain tissue
-
Lu, J. X., Qiang, W., Yau, W. M., Schwieters, C. D., Meredith, S. C., and Tycko, R. (2013) Molecular structure of beta-Amyloid fibrils in Alzheimer"s disease brain tissue Cell 154, 1257-1268
-
(2013)
Cell
, vol.154
, pp. 1257-1268
-
-
Lu, J.X.1
Qiang, W.2
Yau, W.M.3
Schwieters, C.D.4
Meredith, S.C.5
Tycko, R.6
-
35
-
-
0037469171
-
Early onset familial Alzheimer"s disease: Mutation frequency in 31 families
-
Janssen, J. C., Beck, J. A., Campbell, T. A., Dickinson, A., Fox, N. C., Harvey, R. J., Houlden, H., Rossor, M. N., and Collinge, J. (2003) Early onset familial Alzheimer"s disease: Mutation frequency in 31 families Neurology 60, 235-239
-
(2003)
Neurology
, vol.60
, pp. 235-239
-
-
Janssen, J.C.1
Beck, J.A.2
Campbell, T.A.3
Dickinson, A.4
Fox, N.C.5
Harvey, R.J.6
Houlden, H.7
Rossor, M.N.8
Collinge, J.9
-
36
-
-
33947505097
-
The Tottori (D7N) and English (H6R) familial Alzheimer Disease mutations accelerate Aβ fibril formation without inscreasing protofibril formation
-
Hori, Y., Hashimoto, T., Wakutani, Y., Urakami, K., Nakashima, K., Condron, M. M., Tsubuki, S., Saido, T. C., Teplow, D. B., and Iwatsubo, T. (2007) The Tottori (D7N) and English (H6R) familial Alzheimer Disease mutations accelerate Aβ fibril formation without inscreasing protofibril formation J. Biol. Chem. 282, 4916-4923
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 4916-4923
-
-
Hori, Y.1
Hashimoto, T.2
Wakutani, Y.3
Urakami, K.4
Nakashima, K.5
Condron, M.M.6
Tsubuki, S.7
Saido, T.C.8
Teplow, D.B.9
Iwatsubo, T.10
-
37
-
-
84860434786
-
Amyloid-beta (Aβ) D7H mutation increases oligomeric Aβ42 and alters properties of Aβ-Zinc/Copper assemblies
-
Chen, W. T., Hong, C. J., Lin, Y. T., Chang, W. H., Huang, H. T., Liao, J. Y., Chang, Y. J., Hsieh, Y. F., Cheng, C. Y., Liu, H. C., Chen, Y. R., and Cheng, I. H. (2012) Amyloid-beta (Aβ) D7H mutation increases oligomeric Aβ42 and alters properties of Aβ-Zinc/Copper assemblies PLoS One 7, e35807
-
(2012)
PLoS One
, vol.7
, pp. 35807
-
-
Chen, W.T.1
Hong, C.J.2
Lin, Y.T.3
Chang, W.H.4
Huang, H.T.5
Liao, J.Y.6
Chang, Y.J.7
Hsieh, Y.F.8
Cheng, C.Y.9
Liu, H.C.10
Chen, Y.R.11
Cheng, I.H.12
-
38
-
-
2542424288
-
Novel amyloid precursor protein gene missense mutation (D678N) in probable familial Alzheimer"s disease
-
Wakutani, Y., Watanabe, K., Adachi, Y., Wada-Isoe, K., Urakami, K., Ninomiya, H., Saido, T. C., Hashimoto, T., Iwatsubo, I., and Nakashima, K. (2004) Novel amyloid precursor protein gene missense mutation (D678N) in probable familial Alzheimer"s disease J. Neurol., Neurosurg. Psychiatry 75, 1039-1042
-
(2004)
J. Neurol., Neurosurg. Psychiatry
, vol.75
, pp. 1039-1042
-
-
Wakutani, Y.1
Watanabe, K.2
Adachi, Y.3
Wada-Isoe, K.4
Urakami, K.5
Ninomiya, H.6
Saido, T.C.7
Hashimoto, T.8
Iwatsubo, I.9
Nakashima, K.10
-
39
-
-
77954927651
-
Effects of the English (H6R) and Tottori (D7N) familial Alzheimer disease mutations on amyloid beta-protein assembly and toxicity
-
Ono, K., Condron, M. M., and Teplow, D. B. (2010) Effects of the English (H6R) and Tottori (D7N) familial Alzheimer disease mutations on amyloid beta-protein assembly and toxicity J. Biol. Chem. 285, 23186-23197
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 23186-23197
-
-
Ono, K.1
Condron, M.M.2
Teplow, D.B.3
-
40
-
-
62449330486
-
Recessive Mutation in the APP Gene with Dominant-Negative Effect on Amyloidogenesis
-
Fede, G. D., Catania, M., Morbin, M., Rossi, G., Suardi, S., Mazzoleni, G., Merlin, M., Giovagnoli, A. R., Prioni, S., Erbetta, A., Falcone, C., Gobbi, M., Colombo, L., Bastone, A., Beeg, M., Manzoni, C., Francescucci, B., Spagnoli, A., Cantù, L., Favero, E. D., Levy, E., Salmona, M., and Tagliavini, F. (2009) Recessive Mutation in the APP Gene with Dominant-Negative Effect on Amyloidogenesis Science 323, 1473-1477
-
(2009)
Science
, vol.323
, pp. 1473-1477
-
-
Fede, G.D.1
Catania, M.2
Morbin, M.3
Rossi, G.4
Suardi, S.5
Mazzoleni, G.6
Merlin, M.7
Giovagnoli, A.R.8
Prioni, S.9
Erbetta, A.10
Falcone, C.11
Gobbi, M.12
Colombo, L.13
Bastone, A.14
Beeg, M.15
Manzoni, C.16
Francescucci, B.17
Spagnoli, A.18
Cantù, L.19
Favero, E.D.20
Levy, E.21
Salmona, M.22
Tagliavini, F.23
more..
-
41
-
-
84885361410
-
Mechanism of amyloid beta-protein dimerization determined using single-molecule AFM force spectroscopy
-
Lv, Z. J., Roychaudhuri, R., Condron, M. M., Teplow, D. B., and Lyubchenko, Y. L. (2013) Mechanism of amyloid beta-protein dimerization determined using single-molecule AFM force spectroscopy Sci. Rep. 3, srep02880
-
(2013)
Sci. Rep.
, vol.3
, pp. 02880
-
-
Lv, Z.J.1
Roychaudhuri, R.2
Condron, M.M.3
Teplow, D.B.4
Lyubchenko, Y.L.5
-
43
-
-
84888339056
-
Effect of the Tottori Familial Disease Mutation (D7N) on the Monomers and Dimers of Aβ40 and Aβ42
-
Viet, M. H., Nguyen, P. H., Ngo, S. T., Li, M. S., and Derreumaux, P. (2013) Effect of the Tottori Familial Disease Mutation (D7N) on the Monomers and Dimers of Aβ40 and Aβ42 ACS Chem. Neurosci. 4, 1446-1457
-
(2013)
ACS Chem. Neurosci.
, vol.4
, pp. 1446-1457
-
-
Viet, M.H.1
Nguyen, P.H.2
Ngo, S.T.3
Li, M.S.4
Derreumaux, P.5
-
44
-
-
61949475048
-
Influence of preformed Asp23-Lys28 salt bridge on the conformational fluctuations of monomers and dimers of Aβ peptides with implications for rates of fibril formation
-
Reddy, G., Straub, J. E., and Thirumalai, D. (2009) Influence of preformed Asp23-Lys28 salt bridge on the conformational fluctuations of monomers and dimers of Aβ peptides with implications for rates of fibril formation J. Phys. Chem. B 113, 1162-1172
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 1162-1172
-
-
Reddy, G.1
Straub, J.E.2
Thirumalai, D.3
-
45
-
-
78349267139
-
Determination of factors governing fibrillogenesis of polypeptide chains using lattice models
-
Li, M. S., Co, N. T., Hu, C. K., Straub, J. E., and Thirumalai, D. (2010) Determination of factors governing fibrillogenesis of polypeptide chains using lattice models Phys. Rev. Lett. 105, 218101
-
(2010)
Phys. Rev. Lett.
, vol.105
, pp. 218101
-
-
Li, M.S.1
Co, N.T.2
Hu, C.K.3
Straub, J.E.4
Thirumalai, D.5
-
46
-
-
17644397372
-
Aβ40-Lactam(D23/K28) models a conformation highly favorable for nucleation of amyloid
-
Sciarretta, K. L., Gordon, D. J., Petkova, A. T., Tycko, R., and Meredith, S. C. (2005) Aβ40-Lactam(D23/K28) models a conformation highly favorable for nucleation of amyloid Biochemistry 44, 6003-6014
-
(2005)
Biochemistry
, vol.44
, pp. 6003-6014
-
-
Sciarretta, K.L.1
Gordon, D.J.2
Petkova, A.T.3
Tycko, R.4
Meredith, S.C.5
-
47
-
-
65249190783
-
Effect of β-sheet propensity on peptide aggregation
-
Bellesia, G. and Shea, J.-E. (2009) Effect of β-sheet propensity on peptide aggregation J. Chem. Phys. 130, 145103
-
(2009)
J. Chem. Phys.
, vol.130
, pp. 145103
-
-
Bellesia, G.1
Shea, J.-E.2
-
48
-
-
77952362678
-
Relationship between population of the fibril-prone conformation in the monomeric state and oligomer formation times of peptides: Insights from all-Atom simulations
-
Nam, H. B., Kouza, M., Zung, H., and Li, M. S. (2010) Relationship between population of the fibril-prone conformation in the monomeric state and oligomer formation times of peptides: Insights from all-Atom simulations J. Chem. Phys. 132, 165104
-
(2010)
J. Chem. Phys.
, vol.132
, pp. 165104
-
-
Nam, H.B.1
Kouza, M.2
Zung, H.3
Li, M.S.4
-
49
-
-
84869858716
-
Familial Alzheimer"s Disease mutations differentially alter amyloid β-protein oligomerization
-
Gessel, M. M., Bernstein, S., Kemper, M., Teplow, D. B., and Bowers, M. T. (2012) Familial Alzheimer"s Disease mutations differentially alter amyloid β-protein oligomerization ACS Chem. Neurosci. 3, 909-918
-
(2012)
ACS Chem. Neurosci.
, vol.3
, pp. 909-918
-
-
Gessel, M.M.1
Bernstein, S.2
Kemper, M.3
Teplow, D.B.4
Bowers, M.T.5
-
50
-
-
33748887803
-
Structural information from ion mobility measurements: Effects of the long range potential
-
Mesleh, M. F., Hunter, J. M., Shvartsburg, A. A., Schatz, G. C., and Jarrold, M. F. (1996) Structural information from ion mobility measurements: Effects of the long range potential J. Phys. Chem. 100, 16082
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 16082
-
-
Mesleh, M.F.1
Hunter, J.M.2
Shvartsburg, A.A.3
Schatz, G.C.4
Jarrold, M.F.5
-
51
-
-
33644526613
-
Amyloid β-protein monomer structure: A computational and experimental study
-
Baumketner, A., Bernstein, S. L., Wyttenbach, T., Bitan, G., Teplow, D. B., Bowers, M. T., and Shea, J. E. (2006) Amyloid β-protein monomer structure: A computational and experimental study Protein Sci. 15, 420-428
-
(2006)
Protein Sci.
, vol.15
, pp. 420-428
-
-
Baumketner, A.1
Bernstein, S.L.2
Wyttenbach, T.3
Bitan, G.4
Teplow, D.B.5
Bowers, M.T.6
Shea, J.E.7
-
52
-
-
0034521981
-
Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models
-
Kollman, P., Massova, I., Reyes, C., Kuhn, B., Huo, S., Chong, L., Lee, M., Lee, T., Duan, Y., Wang, W., Donini, O., Cieplak, P., Srinivasan, J., Case, D., and T.E. Cheatham, I. (2000) Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models Acc. Chem. Res. 33, 889-897
-
(2000)
Acc. Chem. Res.
, vol.33
, pp. 889-897
-
-
Kollman, P.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.5
Chong, L.6
Lee, M.7
Lee, T.8
Duan, Y.9
Wang, W.10
Donini, O.11
Cieplak, P.12
Srinivasan, J.13
Case, D.14
Cheatham I T, E.15
-
53
-
-
80053300058
-
Study of tamiflu sensitivity to variants of A/H5N1 virus using different force fields
-
Nguyen, T. T., Mai, B. K., and Li, M. S. (2011) Study of tamiflu sensitivity to variants of A/H5N1 virus using different force fields J. Chem. Inf. Model. 51, 2266-2276
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 2266-2276
-
-
Nguyen, T.T.1
Mai, B.K.2
Li, M.S.3
-
54
-
-
84863528795
-
42: Evidence from molecular dynamics simulations
-
42: Evidence from molecular dynamics simulations J. Chem. Phys. 136, 245105
-
(2012)
J. Chem. Phys.
, vol.136
, pp. 245105
-
-
Viet, M.H.1
Li, M.S.2
-
55
-
-
0025283002
-
Electrostatic interactions in macromolecules: Theory and applications. Annu. Rev. Biophys
-
Sharp, K. A. and Honig, B. (1990) Electrostatic interactions in macromolecules: theory and applications. Annu. Rev. Biophys Biophys. Chem. 19, 301-332
-
(1990)
Biophys. Chem.
, vol.19
, pp. 301-332
-
-
Sharp, K.A.1
Honig, B.2
-
56
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
Baker, N. A., Sept, D., Joseph, S., Holst, M. J., and McCammon, J. A. (2001) Electrostatics of nanosystems: application to microtubules and the ribosome Proc. Natl. Acad. Sci. U.S.A. 98, 10037-10041
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
57
-
-
0015866154
-
Environment and exposure to solvent of protein atoms-lysozyme and insulin
-
Shrake, A. and Rupley, J. A. (1973) Environment and exposure to solvent of protein atoms-lysozyme and insulin J. Mol. Biol. 79, 351-371
-
(1973)
J. Mol. Biol.
, vol.79
, pp. 351-371
-
-
Shrake, A.1
Rupley, J.A.2
-
58
-
-
32844457567
-
Accurate calculation of hydration free energies using macroscopic solvent models
-
Sitkoff, D., Sharp, K. A., and Honig, B. (1994) Accurate calculation of hydration free energies using macroscopic solvent models J. Phys. Chem. 97, 1978-1988
-
(1994)
J. Phys. Chem.
, vol.97
, pp. 1978-1988
-
-
Sitkoff, D.1
Sharp, K.A.2
Honig, B.3
-
59
-
-
69949190420
-
Amino Acid Position-specific Contributions to Amyloid beta-Protein Oligomerization
-
Maji, S. K., Loo, R. R. O., Inayathullah, M., Spring, S. M., Vollers, S. S., Condron, M. M., Bitan, G., Loo, J. A., and Teplow, D. B. (2009) Amino Acid Position-specific Contributions to Amyloid beta-Protein Oligomerization J. Biol. Chem. 284, 23580-23591
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 23580-23591
-
-
Maji, S.K.1
Loo, R.R.O.2
Inayathullah, M.3
Spring, S.M.4
Vollers, S.S.5
Condron, M.M.6
Bitan, G.7
Loo, J.A.8
Teplow, D.B.9
-
60
-
-
33748518255
-
Comparison of Multiple Amber Force Fields and Development of Improved Protein Backbone Parameters
-
Hornak, V., Abel, R., Okur, A., Strockbine, B., Roitberg, A., and Simmerling, C. (2006) Comparison of Multiple Amber Force Fields and Development of Improved Protein Backbone Parameters Proteins: Struct., Funct., Bioinf. 65, 712-725
-
(2006)
Proteins: Struct., Funct., Bioinf.
, vol.65
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
61
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, J. W., Chandrasekhar, J., Madura, J. D., Imprey, R. W., and Klein, M. L. (1983) Comparison of simple potential functions for simulating liquid water J. Chem. Phys. 79, 926
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926
-
-
Jorgensen, J.W.1
Chandrasekhar, J.2
Madura, J.D.3
Imprey, R.W.4
Klein, M.L.5
-
62
-
-
0003544049
-
-
Vdf Hochschulverlag AG an der ETH Zurich, Zurich.
-
van Gunsteren, W. F., Billeter, S. R., Eising, A. A., Hunenberger, P. H., Kruger, P., Mark, A. E., Scott, W. R. P., and Tironi, I. G. (1996) Biomolecular Simulation: The GROMOS96 Manual and User Guide, Vdf Hochschulverlag AG an der ETH Zurich, Zurich.
-
(1996)
Biomolecular Simulation: The GROMOS96 Manual and User Guide
-
-
Van Gunsteren, W.F.1
Billeter, S.R.2
Eising, A.A.3
Hunenberger, P.H.4
Kruger, P.5
Mark, A.E.6
Scott, W.R.P.7
Tironi, I.G.8
-
63
-
-
84896864699
-
Effects of water models on binding affinity: Evidence from all-Atom simulation of binding of tamiflu to A/H5N1 neuraminidase
-
Nguyen, T. T., Viet, M. H., and Li, M. S. (2014) Effects of water models on binding affinity: Evidence from all-Atom simulation of binding of tamiflu to A/H5N1 neuraminidase Sci. World J. 2014, 536084
-
(2014)
Sci. World J.
, vol.2014
, pp. 536084
-
-
Nguyen, T.T.1
Viet, M.H.2
Li, M.S.3
-
64
-
-
0032483035
-
Solution structure of amyloid beta-peptide(1-40) in a water-micelle environment. Is the membrane-spanning domain where we think it is?
-
Coles, M., Bicknell, W., Watson, A. A., Fairlie, D. P., and Craik, D. J. (1998) Solution structure of amyloid beta-peptide(1-40) in a water-micelle environment. Is the membrane-spanning domain where we think it is? Biochemistry 37, 11064-11077
-
(1998)
Biochemistry
, vol.37
, pp. 11064-11077
-
-
Coles, M.1
Bicknell, W.2
Watson, A.A.3
Fairlie, D.P.4
Craik, D.J.5
-
65
-
-
32344451179
-
The α-to-β conformational transition of Alzheimer"s Aβ-(1-42) peptide in aqueous media is reversible: A step by step conformational analysis suggests the location of β conformation seeding
-
Tomaselli, S., Esposito, V., Vangone, P., van Nuland, N. A., Bonvin, A. M., Guerrini, R., Tancredi, T., Temussi, P. A., and Picone, D. (2006) The α-to-β conformational transition of Alzheimer"s Aβ-(1-42) peptide in aqueous media is reversible: a step by step conformational analysis suggests the location of β conformation seeding ChemBioChem 7, 257-267
-
(2006)
ChemBioChem
, vol.7
, pp. 257-267
-
-
Tomaselli, S.1
Esposito, V.2
Vangone, P.3
Van Nuland, N.A.4
Bonvin, A.M.5
Guerrini, R.6
Tancredi, T.7
Temussi, P.A.8
Picone, D.9
-
66
-
-
0035913529
-
Evaluation and reparametrization of the OPSL-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides
-
Kaminski, G. A. and Friesner, R. A. (2001) Evaluation and reparametrization of the OPSL-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides J. Phys. Chem. B 105, 6474-6487
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 6474-6487
-
-
Kaminski, G.A.1
Friesner, R.A.2
-
69
-
-
46249092554
-
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess, B., Kutzner, C., van der Spoel, D., and Lindahl, E. (2008) GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation J. Chem. Theory Comput. 4, 435-447
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
70
-
-
34247234602
-
The Alzheimer"s peptides Aβ40 and 42 adopt distinct conformations in water: A combined MD/NMR study
-
Sgourakis, N. G., Yan, Y. L., McCallum, S. A., Wang, C. Y., and Garcia, A. E. (2007) The Alzheimer"s peptides Aβ40 and 42 adopt distinct conformations in water: A combined MD/NMR study J. Mol. Biol. 368, 1448-1457
-
(2007)
J. Mol. Biol.
, vol.368
, pp. 1448-1457
-
-
Sgourakis, N.G.1
Yan, Y.L.2
McCallum, S.A.3
Wang, C.Y.4
Garcia, A.E.5
-
72
-
-
0347784245
-
Quit high resolution computer models of plasma
-
Hockney, R. W., Goel, S. P., and Eastwood, J. (1974) Quit high resolution computer models of plasma J. Comput. Phys. 14, 148-158
-
(1974)
J. Comput. Phys.
, vol.14
, pp. 148-158
-
-
Hockney, R.W.1
Goel, S.P.2
Eastwood, J.3
-
73
-
-
0000388705
-
LINCS: A linear constraint solver for molecular simulations
-
Hess, B., Bekker, H., Berendsen, H. J. C., and Fraaije, J. G. E. M. (1997) LINCS: A linear constraint solver for molecular simulations J. Comput. Chem. 18, 1463-1472
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
74
-
-
33846086933
-
Canonical sampling through velocity rescaling
-
Bussi, G., Donadio, D., and Parrinello, M. (2007) Canonical sampling through velocity rescaling J. Chem. Phys. 126, 014101
-
(2007)
J. Chem. Phys.
, vol.126
, pp. 014101
-
-
Bussi, G.1
Donadio, D.2
Parrinello, M.3
-
75
-
-
33750587438
-
Molecular-dynamics with coupling to an external bath
-
Berendsen, H. J. C., Postma, J. P. M., Vangunsteren, W. F., Dinola, A., and Haak, J. R. (1984) Molecular-dynamics with coupling to an external bath J. Chem. Phys. 81, 3684-3690
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Vangunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
76
-
-
33846823909
-
Particle mesh Ewald: An Nlog(N) method for Ewald sums in large systems
-
Darden, T., York, D., and Pedersen, L. (1993) Particle mesh Ewald: An Nlog(N) method for Ewald sums in large systems J. Chem. Phys. 98, 10089-10092
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
77
-
-
3242887525
-
STRIDE: A Web server for secondary structure assignment from known atomic coordinates of proteins
-
Heinig, M. and Frishman, D. (2004) STRIDE: a Web server for secondary structure assignment from known atomic coordinates of proteins Nucleic Acids Res. 32, W500-2
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 500-502
-
-
Heinig, M.1
Frishman, D.2
-
78
-
-
10844292652
-
Energy landscape of a small peptide revealed by dihedral angle principal component analysis
-
Mu, Y., Nguyen, P. H., and Stock, G. (2005) Energy landscape of a small peptide revealed by dihedral angle principal component analysis Proteins 58, 45-52
-
(2005)
Proteins
, vol.58
, pp. 45-52
-
-
Mu, Y.1
Nguyen, P.H.2
Stock, G.3
-
79
-
-
84856010358
-
Atomic-level investigations on the amyloid-β dimerization process and its driving forces in water
-
Chong, S.-H. and Ham, S. (2012) Atomic-level investigations on the amyloid-β dimerization process and its driving forces in water Phys. Chem. Chem. Phys. 14, 1573-1575
-
(2012)
Phys. Chem. Chem. Phys.
, vol.14
, pp. 1573-1575
-
-
Chong, S.-H.1
Ham, S.2
|