-
1
-
-
28644437291
-
The amyloid-β precursor protein: Integrating structure with biological function
-
Reinhard, C., Hebert, S. S., and De Strooper, B. (2005) The amyloid-β precursor protein: integrating structure with biological function EMBO J. 24, 3996-4006
-
(2005)
EMBO J.
, vol.24
, pp. 3996-4006
-
-
Reinhard, C.1
Hebert, S.S.2
De Strooper, B.3
-
2
-
-
0037135111
-
Medicine -The amyloid hypothesis of Alzheimer's disease: Progress and problems on the road to therapeutics
-
Hardy, J. and Selkoe, D. J. (2002) Medicine-The amyloid hypothesis of Alzheimer's disease: Progress and problems on the road to therapeutics Science 297, 353-356
-
(2002)
Science
, vol.297
, pp. 353-356
-
-
Hardy, J.1
Selkoe, D.J.2
-
3
-
-
0026597063
-
Alzheimer's disease: The amyloid cascade hypothesis
-
Hardy, J. A. and Higgins, G. A. (1992) Alzheimer's disease: the amyloid cascade hypothesis Science 256, 184-185
-
(1992)
Science
, vol.256
, pp. 184-185
-
-
Hardy, J.A.1
Higgins, G.A.2
-
4
-
-
0030769091
-
Distinct sites of intracellular production for Alzheimer's disease Aβ 40/42 amyloid peptides
-
Hartmann, T., Bieger, S. C., Bruhl, B., Tienari, P. J., Ida, N., Allsop, D., Roberts, G. W., Masters, C. L., Dotti, C. G., Unsicker, K., and Beyreuther, K. (1997) Distinct sites of intracellular production for Alzheimer's disease Aβ 40/42 amyloid peptides Nat. Med. 3, 1016-1020
-
(1997)
Nat. Med.
, vol.3
, pp. 1016-1020
-
-
Hartmann, T.1
Bieger, S.C.2
Bruhl, B.3
Tienari, P.J.4
Ida, N.5
Allsop, D.6
Roberts, G.W.7
Masters, C.L.8
Dotti, C.G.9
Unsicker, K.10
Beyreuther, K.11
-
5
-
-
0037200117
-
Oligomeric and fibrillar species of amyloid-β peptides differentially affect neuronal viability
-
Dahlgren, K. N., Manelli, A. M., Stine, W. B., Baker, L. K., Krafft, G. A., and LaDu, M. J. (2002) Oligomeric and fibrillar species of amyloid-β peptides differentially affect neuronal viability J. Biol. Chem. 277, 32046-32053
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 32046-32053
-
-
Dahlgren, K.N.1
Manelli, A.M.2
Stine, W.B.3
Baker, L.K.4
Krafft, G.A.5
Ladu, M.J.6
-
6
-
-
0033600274
-
Translating cell biology into therapeutic advances in Alzheimer's disease
-
Selkoe, D. J. (1999) Translating cell biology into therapeutic advances in Alzheimer's disease Nature 399, A23-A31
-
(1999)
Nature
, vol.399
-
-
Selkoe, D.J.1
-
7
-
-
0028945660
-
Evidence That Aβ42 Is the Real Culprit in Alzheimers-Disease
-
Younkin, S. G. (1995) Evidence That Aβ42 Is the Real Culprit in Alzheimers-Disease Ann. Neurol. 37, 287-288
-
(1995)
Ann. Neurol.
, vol.37
, pp. 287-288
-
-
Younkin, S.G.1
-
8
-
-
46849090552
-
Effects of Familial Alzheimer's Disease Mutations on the Folding Nucleation of the Amyloid [beta]-Protein
-
Krone, M. G., Baumketner, A., Bernstein, S. L., Wyttenbach, T., Lazo, N. D., Teplow, D. B., Bowers, M. T., and Shea, J. E. (2008) Effects of Familial Alzheimer's Disease Mutations on the Folding Nucleation of the Amyloid [beta]-Protein J. Mol. Biol. 381, 221-228
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 221-228
-
-
Krone, M.G.1
Baumketner, A.2
Bernstein, S.L.3
Wyttenbach, T.4
Lazo, N.D.5
Teplow, D.B.6
Bowers, M.T.7
Shea, J.E.8
-
9
-
-
0242580170
-
Neurotoxicity and physicochemical properties of Aβ mutant peptides from cerebral amyloid angiopathy -Implication for the pathogenesis of cerebral amyloid angiopathy and Alzheimer's disease
-
Murakami, K., Irie, K., Morimoto, A., Ohigashi, H., Shindo, M., Nagao, M., Shimizu, T., and Shirasawa, T. (2003) Neurotoxicity and physicochemical properties of Aβ mutant peptides from cerebral amyloid angiopathy- Implication for the pathogenesis of cerebral amyloid angiopathy and Alzheimer's disease J. Biol. Chem. 278, 46179-46187
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 46179-46187
-
-
Murakami, K.1
Irie, K.2
Morimoto, A.3
Ohigashi, H.4
Shindo, M.5
Nagao, M.6
Shimizu, T.7
Shirasawa, T.8
-
10
-
-
17944368176
-
The 'Arctic' APP mutation (E693G) causes Alzheimer's disease by enhanced Aβ protofibril formation
-
Nilsberth, C., Westlind-Danielsson, A., Eckman, C. B., Condron, M. M., Axelman, K., Forsell, C., Stenh, C., Luthman, J., Teplow, D. B., Younkin, S. G., Naslund, J., and Lannfelt, L. (2001) The 'Arctic' APP mutation (E693G) causes Alzheimer's disease by enhanced Aβ protofibril formation Nat. Neurosci. 4, 887-893
-
(2001)
Nat. Neurosci.
, vol.4
, pp. 887-893
-
-
Nilsberth, C.1
Westlind-Danielsson, A.2
Eckman, C.B.3
Condron, M.M.4
Axelman, K.5
Forsell, C.6
Stenh, C.7
Luthman, J.8
Teplow, D.B.9
Younkin, S.G.10
Naslund, J.11
Lannfelt, L.12
-
11
-
-
0034982951
-
Novel amyloid precursor protein mutation in an Iowa family with dementia and severe cerebral amyloid angiopathy
-
Grabowski, T. J., Cho, H. S., Vonsattel, J. P. G., Rebeck, G. W., and Greenberg, S. M. (2001) Novel amyloid precursor protein mutation in an Iowa family with dementia and severe cerebral amyloid angiopathy Ann. Neurol. 49, 697-705
-
(2001)
Ann. Neurol.
, vol.49
, pp. 697-705
-
-
Grabowski, T.J.1
Cho, H.S.2
Vonsattel, J.P.G.3
Rebeck, G.W.4
Greenberg, S.M.5
-
12
-
-
2542424288
-
Novel amyloid precursor protein gene missense mutation (D678N) in probable familial Alzheimer's disease
-
Wakutani, Y., Watanabe, K., Adachi, Y., Wada-Isoe, K., Urakami, K., Ninomiya, H., Saido, T. C., Hashimoto, T., Iwatsubo, T., and Nakashima, K. (2004) Novel amyloid precursor protein gene missense mutation (D678N) in probable familial Alzheimer's disease J. Neurol., Neurosurg. Psychiatry 75, 1039-1042
-
(2004)
J. Neurol., Neurosurg. Psychiatry
, vol.75
, pp. 1039-1042
-
-
Wakutani, Y.1
Watanabe, K.2
Adachi, Y.3
Wada-Isoe, K.4
Urakami, K.5
Ninomiya, H.6
Saido, T.C.7
Hashimoto, T.8
Iwatsubo, T.9
Nakashima, K.10
-
13
-
-
0037469171
-
Early onset familial Alzheimer's disease -Mutation frequency in 31 families
-
Janssen, J. C., Beck, J. A., Campbell, T. A., Dickinson, A., Fox, N. C., Harvey, R. J., Houlden, H., Rossor, M. N., and Collinge, J. (2003) Early onset familial Alzheimer's disease-Mutation frequency in 31 families Neurology 60, 235-239
-
(2003)
Neurology
, vol.60
, pp. 235-239
-
-
Janssen, J.C.1
Beck, J.A.2
Campbell, T.A.3
Dickinson, A.4
Fox, N.C.5
Harvey, R.J.6
Houlden, H.7
Rossor, M.N.8
Collinge, J.9
-
14
-
-
41749096713
-
A new amyloid-β variant favoring oligomerization in Alzheimer's-type dementia
-
Tomiyama, T., Nagata, T., Shimada, H., Teraoka, R., Fukushima, A., Kanemitsu, H., Takuma, H., Kuwano, R., Imagawa, M., and Ataka, S. (2008) A new amyloid-β variant favoring oligomerization in Alzheimer's-type dementia Ann. Neurol. 63, 377-387
-
(2008)
Ann. Neurol.
, vol.63
, pp. 377-387
-
-
Tomiyama, T.1
Nagata, T.2
Shimada, H.3
Teraoka, R.4
Fukushima, A.5
Kanemitsu, H.6
Takuma, H.7
Kuwano, R.8
Imagawa, M.9
Ataka, S.10
-
15
-
-
84954358028
-
Amyloid β-Protein Monomer Folding: Free-Energy Surfaces Reveal Alloform-Specific Differences
-
Yang, M. F. and Teplow, D. B. (2008) Amyloid β-Protein Monomer Folding: Free-Energy Surfaces Reveal Alloform-Specific Differences J. Mol. Biol. 384, 450-464
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 450-464
-
-
Yang, M.F.1
Teplow, D.B.2
-
16
-
-
33645396508
-
All-atom molecular dynamics studies of the full-length β-amyloid peptides
-
Luttmann, E. and Fels, G. (2006) All-atom molecular dynamics studies of the full-length β-amyloid peptides Chem. Phys. 323, 138-147
-
(2006)
Chem. Phys.
, vol.323
, pp. 138-147
-
-
Luttmann, E.1
Fels, G.2
-
17
-
-
34247234602
-
The Alzheimer's peptides Aβ 40 and 42 adopt distinct conformations in water: A combined MD/NMR study
-
Sgourakis, N. G., Yan, Y. L., McCallum, S. A., Wang, C. Y., and Garcia, A. E. (2007) The Alzheimer's peptides Aβ 40 and 42 adopt distinct conformations in water: A combined MD/NMR study J. Mol. Biol. 368, 1448-1457
-
(2007)
J. Mol. Biol.
, vol.368
, pp. 1448-1457
-
-
Sgourakis, N.G.1
Yan, Y.L.2
McCallum, S.A.3
Wang, C.Y.4
Garcia, A.E.5
-
18
-
-
33845802653
-
Characterizations of distinct amyloidogenic conformations of the Aβ(1-40) and (1-42) peptides
-
Lim, K. H., Collver, H. H., Le, Y. T. H., Nagchowdhuri, P., and Kenney, J. M. (2007) Characterizations of distinct amyloidogenic conformations of the Aβ(1-40) and (1-42) peptides Biochem. Biophys. Res. Commun. 353, 443-449
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.353
, pp. 443-449
-
-
Lim, K.H.1
Collver, H.H.2
Le, Y.T.H.3
Nagchowdhuri, P.4
Kenney, J.M.5
-
19
-
-
10744219665
-
Solution NMR studies of the Aβ(1-40) and Aβ(1-42) peptides establish that the met35 oxidation state affects the mechanism of amyloid formation
-
Hou, L. M., Shao, H. Y., Zhang, Y. B., Li, H., Menon, N. K., Neuhaus, E. B., Brewer, J. M., Byeon, I. J. L., Ray, D. G., Vitek, M. P., Iwashita, T., Makula, R. A., Przybyla, A. B., and Zagorski, M. G. (2004) Solution NMR studies of the Aβ(1-40) and Aβ(1-42) peptides establish that the met35 oxidation state affects the mechanism of amyloid formation J. Am. Chem. Soc. 126, 1992-2005
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 1992-2005
-
-
Hou, L.M.1
Shao, H.Y.2
Zhang, Y.B.3
Li, H.4
Menon, N.K.5
Neuhaus, E.B.6
Brewer, J.M.7
Byeon, I.J.L.8
Ray, D.G.9
Vitek, M.P.10
Iwashita, T.11
Makula, R.A.12
Przybyla, A.B.13
Zagorski, M.G.14
-
20
-
-
63849197629
-
Amyloid beta-Protein Assembly and Alzheimer Disease
-
Roychaudhuri, R., Yang, M., Hoshi, M. M., and Teplow, D. B. (2009) Amyloid beta-Protein Assembly and Alzheimer Disease J. Biol. Chem. 284, 4749-4753
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 4749-4753
-
-
Roychaudhuri, R.1
Yang, M.2
Hoshi, M.M.3
Teplow, D.B.4
-
21
-
-
41749084194
-
Amyloid-β E22Δ variant induces synaptic alteration in mouse hippocampal slices
-
Takuma, H., Teraoka, R., Mori, H., and Tomiyama, T. (2008) Amyloid-β E22Δ variant induces synaptic alteration in mouse hippocampal slices NeuroReport 19, 615
-
(2008)
NeuroReport
, vol.19
, pp. 615
-
-
Takuma, H.1
Teraoka, R.2
Mori, H.3
Tomiyama, T.4
-
22
-
-
79955038897
-
The Osaka FAD Mutation E22Δ Leads to Formation of a Previously Unknown Type of Amyloid β Fibrils and Modulates Aβ Neurotoxicity Fibrillization and Neurotoxicity of E22Δ Variants of Aβ
-
Ovchinnikova, O. Y., Finder, V. H., Vodopivec, I., Nitsch, R. M., and Glockshuber, R. (2011) The Osaka FAD Mutation E22Δ Leads to Formation of a Previously Unknown Type of Amyloid β Fibrils and Modulates Aβ Neurotoxicity Fibrillization and Neurotoxicity of E22Δ Variants of Aβ J. Mol. Biol. 408, 780-791
-
(2011)
J. Mol. Biol.
, vol.408
, pp. 780-791
-
-
Ovchinnikova, O.Y.1
Finder, V.H.2
Vodopivec, I.3
Nitsch, R.M.4
Glockshuber, R.5
-
23
-
-
84866408386
-
E22Δ Mutation in Amyloid β-Protein Promotes β-Sheet Transformation, Radical Production, and Synaptotoxicity, but Not Neurotoxicity
-
Suzuki, T., Murakami, K., Izuo, N., Kume, T., Akaike, A., Nagata, T., Nishizaki, T., Tomiyama, T., Takuma, H., and Mori, H. (2010) E22Δ Mutation in Amyloid β-Protein Promotes β-Sheet Transformation, Radical Production, and Synaptotoxicity, But Not Neurotoxicity Int. J. Alzheimer's Dis. 2011, 1-8
-
(2010)
Int. J. Alzheimer's Dis.
, vol.2011
, pp. 1-8
-
-
Suzuki, T.1
Murakami, K.2
Izuo, N.3
Kume, T.4
Akaike, A.5
Nagata, T.6
Nishizaki, T.7
Tomiyama, T.8
Takuma, H.9
Mori, H.10
-
24
-
-
77950617631
-
A mouse model of amyloid-β oligomers: Their contribution to synaptic alteration, abnormal tau phosphorylation, glial activation, and neuronal loss in vivo
-
Tomiyama, T., Matsuyama, S., Iso, H., Umeda, T., Takuma, H., Ohnishi, K., Ishibashi, K., Teraoka, R., Sakama, N., and Yamashita, T. (2010) A mouse model of amyloid-β oligomers: their contribution to synaptic alteration, abnormal tau phosphorylation, glial activation, and neuronal loss in vivo J. Neurosci. 30, 4845-4856
-
(2010)
J. Neurosci.
, vol.30
, pp. 4845-4856
-
-
Tomiyama, T.1
Matsuyama, S.2
Iso, H.3
Umeda, T.4
Takuma, H.5
Ohnishi, K.6
Ishibashi, K.7
Teraoka, R.8
Sakama, N.9
Yamashita, T.10
-
25
-
-
80052205634
-
Structural dynamics of the Δe22 (Osaka) familial Alzheimer's disease-linked amyloid β-protein
-
Inayathullah, M. and Teplow, D. B. (2011) Structural dynamics of the ΔE22 (Osaka) familial Alzheimer's disease-linked amyloid β-protein Amyloid 1-12
-
(2011)
Amyloid
, pp. 1-12
-
-
Inayathullah, M.1
Teplow, D.B.2
-
26
-
-
84861142911
-
Alzheimer's Disease Amyloid β-Protein Mutations and Deletions That Define Neuronal Binding/Internalization As Early Stage Nonfibrillar/Fibrillar Aggregates and Late Stage Fibrils
-
Poduslo, J. F., Howell, K. G., Olson, N. C., Ramirez-Alvarado, M., and Kandimalla, K. K. (2012) Alzheimer's Disease Amyloid β-Protein Mutations and Deletions That Define Neuronal Binding/Internalization As Early Stage Nonfibrillar/Fibrillar Aggregates and Late Stage Fibrils Biochemistry 51, 3993-4003
-
(2012)
Biochemistry
, vol.51
, pp. 3993-4003
-
-
Poduslo, J.F.1
Howell, K.G.2
Olson, N.C.3
Ramirez-Alvarado, M.4
Kandimalla, K.K.5
-
27
-
-
79952938717
-
The Japanese Mutant Aβ (ΔE22-Aβ(1-39)) Forms Fibrils Instantaneously, with Low-Thioflavin T Fluorescence: Seeding of Wild-Type Aβ(1-40) into Atypical Fibrils by Δe22-Aβ(1-39)
-
Cloe, A. L., Orgel, J. P. R. O., Sachleben, J. R., Tycko, R., and Meredith, S. C. (2011) The Japanese Mutant Aβ (ΔE22-Aβ(1-39)) Forms Fibrils Instantaneously, with Low-Thioflavin T Fluorescence: Seeding of Wild-Type Aβ(1-40) into Atypical Fibrils by ΔE22-Aβ(1-39) Biochemistry 50, 2026-2039
-
(2011)
Biochemistry
, vol.50
, pp. 2026-2039
-
-
Cloe, A.L.1
Orgel, J.P.R.O.2
Sachleben, J.R.3
Tycko, R.4
Meredith, S.C.5
-
28
-
-
84867508405
-
Probing and Trapping a Sensitive Conformation: Amyloid-β Fibrils, Oligomers, and Dimers
-
Fawver, J. N., Duong, K. T., Wise-Scira, O., Schall, H. E., Coskuner, O., Zhu, X., Colom, L. V., and Murray, I. V. J. (2012) Probing and Trapping a Sensitive Conformation: Amyloid-β Fibrils, Oligomers, and Dimers J. Alzheimer's Dis. 32, 197-215
-
(2012)
J. Alzheimer's Dis.
, vol.32
, pp. 197-215
-
-
Fawver, J.N.1
Duong, K.T.2
Wise-Scira, O.3
Schall, H.E.4
Coskuner, O.5
Zhu, X.6
Colom, L.V.7
Murray, I.V.J.8
-
29
-
-
0028265912
-
Secondary structure of amyloid-β peptide correlates with neurotoxic activity in vitro
-
Simmons, L. K., May, P. C., Tomaselli, K. J., Rydel, R. E., Fuson, K. S., Brigham, E. F., Wright, S., Lieberburg, I., Becker, G. W., and Brems, D. N. (1994) Secondary structure of amyloid-β peptide correlates with neurotoxic activity in vitro Mol. Pharmacol. 45, 373-379
-
(1994)
Mol. Pharmacol.
, vol.45
, pp. 373-379
-
-
Simmons, L.K.1
May, P.C.2
Tomaselli, K.J.3
Rydel, R.E.4
Fuson, K.S.5
Brigham, E.F.6
Wright, S.7
Lieberburg, I.8
Becker, G.W.9
Brems, D.N.10
-
30
-
-
0032084472
-
Structural and kinetic features of amyloid β-protein fibrillogenesis
-
Teplow, D. B. (1998) Structural and kinetic features of amyloid β-protein fibrillogenesis Amyloid\ 5, 121-142
-
(1998)
Amyloid\
, vol.5
, pp. 121-142
-
-
Teplow, D.B.1
-
31
-
-
0028981219
-
Structure-Activity Analyses of β-Amyloid Peptides -Contributions of the β25-35 Region to Aggregation and Neurotoxicity
-
Pike, C. J., Walencewiczwasserman, A. J., Kosmoski, J., Cribbs, D. H., Glabe, C. G., and Cotman, C. W. (1995) Structure-Activity Analyses of β-Amyloid Peptides-Contributions of the β25-35 Region to Aggregation and Neurotoxicity J. Neurochem. 64, 253-265
-
(1995)
J. Neurochem.
, vol.64
, pp. 253-265
-
-
Pike, C.J.1
Walencewiczwasserman, A.J.2
Kosmoski, J.3
Cribbs, D.H.4
Glabe, C.G.5
Cotman, C.W.6
-
32
-
-
0020997912
-
Dictionary of Protein Secondary Structure -Pattern-Recognition of Hydrogen-Bonded and Geometrical Features
-
Kabsch, W. and Sander, C. (1983) Dictionary of Protein Secondary Structure-Pattern-Recognition of Hydrogen-Bonded and Geometrical Features Biopolymers 22, 2577-2637
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
33
-
-
22444449900
-
On the nucleation of amyloid β-protein monomer folding
-
Lazo, N. D., Grant, M. A., Condron, M. C., Rigby, A. C., and Teplow, D. B. (2005) On the nucleation of amyloid β-protein monomer folding Protein Sci. 14, 1581-1596
-
(2005)
Protein Sci.
, vol.14
, pp. 1581-1596
-
-
Lazo, N.D.1
Grant, M.A.2
Condron, M.C.3
Rigby, A.C.4
Teplow, D.B.5
-
34
-
-
17844410343
-
Folding events in the 21-30 region of amyloid-β-protein (Aβ) studied in silico
-
Borreguero, J. M., Urbanc, B., Lazo, N. D., Buldyrev, S. V., Teplow, D. B., and Stanley, H. E. (2005) Folding events in the 21-30 region of amyloid-β-protein (Aβ) studied in silico Proc. Natl. Acad. Sci. U.S.A. 102, 6015-6020
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 6015-6020
-
-
Borreguero, J.M.1
Urbanc, B.2
Lazo, N.D.3
Buldyrev, S.V.4
Teplow, D.B.5
Stanley, H.E.6
-
35
-
-
29444439999
-
Solvent and mutation effects on the nucleation of amyloid β-protein folding
-
Cruz, L., Urbanc, B., Borreguero, J. M., Lazo, N. D., Teplow, D. B., and Stanley, H. E. (2005) Solvent and mutation effects on the nucleation of amyloid β-protein folding Proc. Natl. Acad. Sci. U.S.A. 102, 18258-18263
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 18258-18263
-
-
Cruz, L.1
Urbanc, B.2
Borreguero, J.M.3
Lazo, N.D.4
Teplow, D.B.5
Stanley, H.E.6
-
36
-
-
33744467718
-
Structure of the 21-30 fragment of amyloid β-protein
-
Baumketner, A., Bernstein, S. L., Wyttenbach, T., Lazo, N. D., Teplow, D. B., Bowers, M. T., and Shea, J. E. (2006) Structure of the 21-30 fragment of amyloid β-protein Protein Sci. 15, 1239-1247
-
(2006)
Protein Sci.
, vol.15
, pp. 1239-1247
-
-
Baumketner, A.1
Bernstein, S.L.2
Wyttenbach, T.3
Lazo, N.D.4
Teplow, D.B.5
Bowers, M.T.6
Shea, J.E.7
-
37
-
-
33644526613
-
Amyloid β-protein monomer structure: A computational and experimental study
-
Baumketner, A., Bernstein, S. L., Wyttenbach, T., Bitan, G., Teplow, D. B., Bowers, M. T., and Shea, J. E. (2006) Amyloid β-protein monomer structure: A computational and experimental study Protein Sci. 15, 420-428
-
(2006)
Protein Sci.
, vol.15
, pp. 420-428
-
-
Baumketner, A.1
Bernstein, S.L.2
Wyttenbach, T.3
Bitan, G.4
Teplow, D.B.5
Bowers, M.T.6
Shea, J.E.7
-
38
-
-
33845570428
-
Dynamics of Asp23-Lys28 salt-bridge formation in Aβ(10-35) monomers
-
Tarus, B., Straub, J. E., and Thirumalai, D. (2006) Dynamics of Asp23-Lys28 salt-bridge formation in Aβ(10-35) monomers J. Am. Chem. Soc. 128, 16159-16168
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 16159-16168
-
-
Tarus, B.1
Straub, J.E.2
Thirumalai, D.3
-
39
-
-
61949475048
-
Influence of Preformed Asp23-Lys28 Salt Bridge on the Conformational Fluctuations of Monomers and Dimers of A beta Peptides with Implications for Rates of Fibril Formation
-
Reddy, G., Straub, J. E., and Thirumalai, D. (2009) Influence of Preformed Asp23-Lys28 Salt Bridge on the Conformational Fluctuations of Monomers and Dimers of A beta Peptides with Implications for Rates of Fibril Formation J. Phys. Chem B. 113, 1162-1172
-
(2009)
J. Phys. Chem B.
, vol.113
, pp. 1162-1172
-
-
Reddy, G.1
Straub, J.E.2
Thirumalai, D.3
-
40
-
-
82555173714
-
Amyloid-β peptide structure in aqueous solution varies with fragment size
-
Wise-Scira, O., Xu, L., Kitahara, T., Perry, G., and Coskuner, O. (2011) Amyloid-β peptide structure in aqueous solution varies with fragment size J. Chem. Phys. 135, 205101
-
(2011)
J. Chem. Phys.
, vol.135
, pp. 205101
-
-
Wise-Scira, O.1
Xu, L.2
Kitahara, T.3
Perry, G.4
Coskuner, O.5
-
41
-
-
78650863624
-
Atomic-Level Characterization of the Ensemble of the Aβ(1-42) Monomer in Water Using Unbiased Molecular Dynamics Simulations and Spectral Algorithms
-
Sgourakis, N. G., Merced-Serrano, M., Boutsidis, C., Drineas, P., Du, Z. M., Wang, C. Y., and Garcia, A. E. (2011) Atomic-Level Characterization of the Ensemble of the Aβ(1-42) Monomer in Water Using Unbiased Molecular Dynamics Simulations and Spectral Algorithms J. Mol. Biol. 405, 570-583
-
(2011)
J. Mol. Biol.
, vol.405
, pp. 570-583
-
-
Sgourakis, N.G.1
Merced-Serrano, M.2
Boutsidis, C.3
Drineas, P.4
Du, Z.M.5
Wang, C.Y.6
Garcia, A.E.7
-
42
-
-
0028802212
-
Structure of Amyloid Aβ(1-40)-Peptide of Alzheimers-Disease
-
Sticht, H., Bayer, P., Willbold, D., Dames, S., Hilbich, C., Beyreuther, K., Frank, R. W., and Rosch, P. (1995) Structure of Amyloid Aβ(1-40)- Peptide of Alzheimers-Disease Eur. J. Biochem. 233, 293-298
-
(1995)
Eur. J. Biochem.
, vol.233
, pp. 293-298
-
-
Sticht, H.1
Bayer, P.2
Willbold, D.3
Dames, S.4
Hilbich, C.5
Beyreuther, K.6
Frank, R.W.7
Rosch, P.8
-
43
-
-
48549095605
-
Comparative Molecular Dynamics Studies of Wild-Type and Oxidized Forms of Full-Length Alzheimer Amyloid β-Peptides Aβ(1-40) and Aβ(1-42)
-
Triguero, L., Singh, R., and Prabhakar, R. (2008) Comparative Molecular Dynamics Studies of Wild-Type and Oxidized Forms of Full-Length Alzheimer Amyloid β-Peptides Aβ(1-40) and Aβ(1-42) J. Phys. Chem. B 112, 7123-7131
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 7123-7131
-
-
Triguero, L.1
Singh, R.2
Prabhakar, R.3
-
44
-
-
0027258525
-
The Carboxy Terminus of the β-Amyloid Protein Is Critical for the Seeding of Amyloid Formation -Implications for the Pathogenesis of Alzheimers-Disease
-
Jarrett, J. T., Berger, E. P., and Lansbury, P. T. (1993) The Carboxy Terminus of the β-Amyloid Protein Is Critical for the Seeding of Amyloid Formation-Implications for the Pathogenesis of Alzheimers-Disease Biochemistry 32, 4693-4697
-
(1993)
Biochemistry
, vol.32
, pp. 4693-4697
-
-
Jarrett, J.T.1
Berger, E.P.2
Lansbury, P.T.3
-
45
-
-
9044229145
-
On the nucleation and growth of amyloid β-protein fibrils: Detection of nuclei and quantitation of rate constants
-
Lomakin, A., Chung, D. S., Benedek, G. B., Kirschner, D. A., and Teplow, D. B. (1996) On the nucleation and growth of amyloid β-protein fibrils: Detection of nuclei and quantitation of rate constants Proc. Natl. Acad. Sci. U.S.A. 93, 1125-1129
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 1125-1129
-
-
Lomakin, A.1
Chung, D.S.2
Benedek, G.B.3
Kirschner, D.A.4
Teplow, D.B.5
-
46
-
-
0030846441
-
Kinetic theory of fibrillogenesis of amyloid β-protein
-
Lomakin, A., Teplow, D. B., Kirschner, D. A., and Benedek, G. B. (1997) Kinetic theory of fibrillogenesis of amyloid β-protein Proc. Natl. Acad. Sci. U.S.A. 94, 7942-7947
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 7942-7947
-
-
Lomakin, A.1
Teplow, D.B.2
Kirschner, D.A.3
Benedek, G.B.4
-
47
-
-
0037422540
-
Amyloid β-protein (Aβ) assembly: Aβ40 and Aβ42 oligomerize through distinct pathways
-
Bitan, G., Kirkitadze, M. D., Lomakin, A., Vollers, S. S., Benedek, G. B., and Teplow, D. B. (2003) Amyloid β-protein (Aβ) assembly: Aβ40 and Aβ42 oligomerize through distinct pathways Proc. Natl. Acad. Sci. U.S.A. 100, 330-335
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 330-335
-
-
Bitan, G.1
Kirkitadze, M.D.2
Lomakin, A.3
Vollers, S.S.4
Benedek, G.B.5
Teplow, D.B.6
-
48
-
-
0030799122
-
Amyloid β-protein fibrillogenesis -Detection of a protofibrillar intermediate
-
Walsh, D. M., Lomakin, A., Benedek, G. B., Condron, M. M., and Teplow, D. B. (1997) Amyloid β-protein fibrillogenesis-Detection of a protofibrillar intermediate J. Biol. Chem. 272, 22364-22372
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 22364-22372
-
-
Walsh, D.M.1
Lomakin, A.2
Benedek, G.B.3
Condron, M.M.4
Teplow, D.B.5
-
49
-
-
0001616080
-
Replica-exchange molecular dynamics method for protein folding
-
Sugita, Y. and Okamoto, Y. (1999) Replica-exchange molecular dynamics method for protein folding Chem. Phys. Lett. 314, 141-151
-
(1999)
Chem. Phys. Lett.
, vol.314
, pp. 141-151
-
-
Sugita, Y.1
Okamoto, Y.2
-
50
-
-
78049265751
-
-
University of California, San Francisco.
-
Case, D., Darden, T., Cheatham, T., Simmerling, C., Wang, J., Duke, R., Luo, R., Walker, R., Zhang, W., and Merz, K. (2010) AMBER 11, University of California, San Francisco.
-
(2010)
AMBER 11
-
-
Case, D.1
Darden, T.2
Cheatham, T.3
Simmerling, C.4
Wang, J.5
Duke, R.6
Luo, R.7
Walker, R.8
Zhang, W.9
Merz, K.10
-
51
-
-
32344451179
-
The α-to-β Conformational Transition of Alzheimer's Aβ-(1-42) Peptide in Aqueous Media is Reversible: A Step by Step Conformational Analysis Suggests the Location of β Conformation Seeding
-
Tomaselli, S., Esposito, V., Vangone, P., van Nuland, N. A. J., Bonvin, A. M. J. J., Guerrini, R., Tancredi, T., Temussi, P. A., and Picone, D. (2006) The α-to-β Conformational Transition of Alzheimer's Aβ-(1-42) Peptide in Aqueous Media is Reversible: A Step by Step Conformational Analysis Suggests the Location of β Conformation Seeding ChemBioChem 7, 257-267
-
(2006)
ChemBioChem
, vol.7
, pp. 257-267
-
-
Tomaselli, S.1
Esposito, V.2
Vangone, P.3
Van Nuland, N.A.J.4
Bonvin, A.M.J.J.5
Guerrini, R.6
Tancredi, T.7
Temussi, P.A.8
Picone, D.9
-
52
-
-
33748518255
-
Comparison of multiple amber force fields and development of improved protein backbone parameters
-
Simmerling, C., Hornak, V., Abel, R., Okur, A., Strockbine, B., and Roitberg, A. (2006) Comparison of multiple amber force fields and development of improved protein backbone parameters Proteins 65, 712-725
-
(2006)
Proteins
, vol.65
, pp. 712-725
-
-
Simmerling, C.1
Hornak, V.2
Abel, R.3
Okur, A.4
Strockbine, B.5
Roitberg, A.6
-
53
-
-
1842479952
-
Exploring protein native states and large-scale conformational changes with a modified generalized born model
-
Case, D. A., Onufriev, A., and Bashford, D. (2004) Exploring protein native states and large-scale conformational changes with a modified generalized born model Proteins 55, 383-394
-
(2004)
Proteins
, vol.55
, pp. 383-394
-
-
Case, D.A.1
Onufriev, A.2
Bashford, D.3
-
54
-
-
84865652373
-
Structures and free energy landscapes of aqueous zinc(II)-bound amyloid-β(1-40) and zinc(II)-bound amyloid-β(1-42) with dynamics
-
Wise-Scira, O., Xu, L., Perry, G., and Coskuner, O. (2012) Structures and free energy landscapes of aqueous zinc(II)-bound amyloid-β(1-40) and zinc(II)-bound amyloid-β(1-42) with dynamics J. Biol. Inorg. Chem. 17, 927-938
-
(2012)
J. Biol. Inorg. Chem.
, vol.17
, pp. 927-938
-
-
Wise-Scira, O.1
Xu, L.2
Perry, G.3
Coskuner, O.4
-
55
-
-
79960237265
-
Replica Temperatures for Uniform Exchange and Efficient Roundtrip Times in Explicit Solvent Parallel Tempering Simulations
-
Prakash, M. K., Barducci, A., and Parrinello, M. (2011) Replica Temperatures for Uniform Exchange and Efficient Roundtrip Times in Explicit Solvent Parallel Tempering Simulations J. Chem. Theory Comput. 7, 2025-2027
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 2025-2027
-
-
Prakash, M.K.1
Barducci, A.2
Parrinello, M.3
-
58
-
-
41549127613
-
A temperature predictor for parallel tempering simulations
-
van der Spoel, D. and Patriksson, A. (2008) A temperature predictor for parallel tempering simulations Phys. Chem. Chem. Phys. 10, 2073-2077
-
(2008)
Phys. Chem. Chem. Phys.
, vol.10
, pp. 2073-2077
-
-
Van Der Spoel, D.1
Patriksson, A.2
-
59
-
-
0034521981
-
Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models
-
Kollman, P. A., Massova, I., Reyes, C., Kuhn, B., Huo, S. H., Chong, L., Lee, M., Lee, T., Duan, Y., Wang, W., Donini, O., Cieplak, P., Srinivasan, J., Case, D. A., and Cheatham, T. E. (2000) Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models Acc. Chem. Res. 33, 889-897
-
(2000)
Acc. Chem. Res.
, vol.33
, pp. 889-897
-
-
Kollman, P.A.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.H.5
Chong, L.6
Lee, M.7
Lee, T.8
Duan, Y.9
Wang, W.10
Donini, O.11
Cieplak, P.12
Srinivasan, J.13
Case, D.A.14
Cheatham, T.E.15
-
60
-
-
0028331255
-
Normal-Mode Analysis of Protein Dynamics
-
Case, D. A. (1994) Normal-Mode Analysis of Protein Dynamics Curr. Opin. Struct. Biol. 4, 285-290
-
(1994)
Curr. Opin. Struct. Biol.
, vol.4
, pp. 285-290
-
-
Case, D.A.1
-
61
-
-
0001351515
-
Estimation of Absolute and Relative Entropies of Macromolecules Using the Covariance-Matrix
-
Schlitter, J. (1993) Estimation of Absolute and Relative Entropies of Macromolecules Using the Covariance-Matrix Chem. Phys. Lett. 215, 617-621
-
(1993)
Chem. Phys. Lett.
, vol.215
, pp. 617-621
-
-
Schlitter, J.1
-
62
-
-
0037340909
-
MD simulation of protein-ligand interaction: Formation and dissociation of an insulin-phenol complex
-
Schlitter, J., Swegat, W., Kruger, P., and Wollmer, A. (2003) MD simulation of protein-ligand interaction: Formation and dissociation of an insulin-phenol complex Biophys. J. 84, 1493-1506
-
(2003)
Biophys. J.
, vol.84
, pp. 1493-1506
-
-
Schlitter, J.1
Swegat, W.2
Kruger, P.3
Wollmer, A.4
|