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Volumn 32, Issue WEB SERVER ISS., 2004, Pages

STRIDE: A web server for secondary structure assignment from known atomic coordinates of proteins

Author keywords

[No Author keywords available]

Indexed keywords

MATRIX METALLOPROTEINASE;

EID: 3242887525     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh429     Document Type: Article
Times cited : (816)

References (15)
  • 2
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 3
    • 0023927904 scopus 로고
    • Identification of structural motifs from protein coordinate data: Secondary structure and first-level supersecondary structure
    • Richards,F.M. and Kundrot,L.E. (1988) Identification of structural motifs from protein coordinate data: secondary structure and first-level supersecondary structure. Proteins, 3, 71-84.
    • (1988) Proteins , vol.3 , pp. 71-84
    • Richards, F.M.1    Kundrot, L.E.2
  • 4
    • 0024821134 scopus 로고
    • Describing protein structure: A general algorithm yielding complete helicoidal parameters and a unique overall axis
    • Sklenar,H., Etchebest,C. and Lavery,R. (1989) Describing protein structure: a general algorithm yielding complete helicoidal parameters and a unique overall axis. Proteins, 6, 46-60.
    • (1989) Proteins , vol.6 , pp. 46-60
    • Sklenar, H.1    Etchebest, C.2    Lavery, R.3
  • 5
    • 0029619259 scopus 로고
    • Knowledge-based protein secondary structure assignment
    • Frishman,D. and Argos,P. (1995) Knowledge-based protein secondary structure assignment. Proteins, 23, 566-579.
    • (1995) Proteins , vol.23 , pp. 566-579
    • Frishman, D.1    Argos, P.2
  • 6
    • 0036174712 scopus 로고    scopus 로고
    • Continuum secondary structure captures protein flexibility
    • Andersen,C.A.F., Palmer,A.G., Brunak,S. and Rost,B. (2002) Continuum secondary structure captures protein flexibility. Structure, 10, 175-185.
    • (2002) Structure , vol.10 , pp. 175-185
    • Andersen, C.A.F.1    Palmer, A.G.2    Brunak, S.3    Rost, B.4
  • 8
    • 0024566942 scopus 로고
    • New hydrogen-bond potentials for use in determining energetically favorable binding sites in molecules of known structure
    • Boobbyer,D.N.A., Goodford,P.J., McWhinnie,P.M. and Wade,R. (1989) New hydrogen-bond potentials for use in determining energetically favorable binding sites in molecules of known structure. J. Med. Chem., 32, 1083-1094.
    • (1989) J. Med. Chem. , vol.32 , pp. 1083-1094
    • Boobbyer, D.N.A.1    Goodford, P.J.2    McWhinnie, P.M.3    Wade, R.4
  • 9
    • 0027439587 scopus 로고
    • Further development of hydrogen bond functions for use in determining energetically favorable binding sites on molecules of known structure
    • Wade,R.C., Clark,K.J. and Googford,P.J. (1993) Further development of hydrogen bond functions for use in determining energetically favorable binding sites on molecules of known structure. J. Med. Chem., 36, 140-156.
    • (1993) J. Med. Chem. , vol.36 , pp. 140-156
    • Wade, R.C.1    Clark, K.J.2    Googford, P.J.3
  • 11
    • 84913591509 scopus 로고
    • Improved strategy in analytic surface calculation for molecular systems: Handling of singularities and computational efficiency
    • Eisenhaber,F. and Argos,P. (1993) Improved strategy in analytic surface calculation for molecular systems: handling of singularities and computational efficiency. J. Comput. Chem., 14, 1272-1280.
    • (1993) J. Comput. Chem. , vol.14 , pp. 1272-1280
    • Eisenhaber, F.1    Argos, P.2
  • 12
    • 84986483798 scopus 로고
    • The double cubic lattice method: Efficient approaches to numerical integration of surface area and volume and to dot surface contouring of molecular assemblies
    • Eisenhaber,F., Lijnzaad,P., Argos,P., Sander,C. and Scharf,M. (1995) The double cubic lattice method: efficient approaches to numerical integration of surface area and volume and to dot surface contouring of molecular assemblies. J. Comput. Chem., 16, 273-284.
    • (1995) J. Comput. Chem. , vol.16 , pp. 273-284
    • Eisenhaber, F.1    Lijnzaad, P.2    Argos, P.3    Sander, C.4    Scharf, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.