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Volumn 15, Issue 6, 2014, Pages 11082-11099

The structure and dynamics of BmR1 protein from Brugia malayi: In silico approaches

Author keywords

Bmr1 protein; Brugia malayi; Epitope prediction; Molecular dynamics simulation; Protein structure prediction

Indexed keywords

BMR1 PROTEIN; RECOMBINANT ANTIGEN; UNCLASSIFIED DRUG; HELMINTH PROTEIN;

EID: 84902961144     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms150611082     Document Type: Article
Times cited : (16)

References (79)
  • 1
    • 85100136808 scopus 로고    scopus 로고
    • Global programme to eliminate lymphatic filariasis
    • World Health Organization
    • World Health Organization. Global programme to eliminate lymphatic filariasis. Wkly. Epidemiol. Rec. 2011, 86, 518-588.
    • (2011) Wkly. Epidemiol. Rec , vol.86 , pp. 518-588
  • 2
    • 13644251915 scopus 로고    scopus 로고
    • Homologs of the Brugia malayi diagnostic antigen BmR1 are present in other filarial parasites but induce different humoral immune responses
    • Noordin, R.; Aziz, R.; Ravindran, B. Homologs of the Brugia malayi diagnostic antigen BmR1 are present in other filarial parasites but induce different humoral immune responses. Filaria J. 2004, 3, 10.
    • (2004) Filaria J , vol.3 , pp. 10
    • Noordin, R.1    Aziz, R.2    Ravindran, B.3
  • 3
    • 37849028316 scopus 로고    scopus 로고
    • Multicentre evaluations of two new rapid IgG4 tests (WB rapid and panLF rapid) for detection of lymphatic filariasis
    • Noordin, R.; Itoh, M.; Kimura, E.; Abdul Rahman, R.; Ravindran, B.; Mahmud, R.; Supali, T.; Weerasooriya, M. Multicentre evaluations of two new rapid IgG4 tests (WB rapid and panLF rapid) for detection of lymphatic filariasis. Filaria J. 2007, 6, 9.
    • (2007) Filaria J , vol.6 , pp. 9
    • Noordin, R.1    Itoh, M.2    Kimura, E.3    Abdul, R.R.4    Ravindran, B.5    Mahmud, R.6    Supali, T.7    Weerasooriya, M.8
  • 4
    • 37849011353 scopus 로고    scopus 로고
    • Pan LF-ELISA using BmR1 and BmSXP recombinant antigens for detection of lymphatic filariasis
    • Abdul Rahman, R.; Hwen-Yee, C.; Noordin, R. Pan LF-ELISA using BmR1 and BmSXP recombinant antigens for detection of lymphatic filariasis. Filaria J. 2007, 6, 10.
    • (2007) Filaria J , vol.6 , pp. 10
    • Abdul, R.R.1    Hwen-Yee, C.2    Noordin, R.3
  • 6
    • 48449106792 scopus 로고    scopus 로고
    • The Jpred 3 secondary structure prediction server
    • Cole, C.; Barber, J.D.; Barton, G.J. The Jpred 3 secondary structure prediction server. Nucleic Acids Res. 2008, 36, W197-W201.
    • (2008) Nucleic Acids Res , vol.36
    • Cole, C.1    Barber, J.D.2    Barton, G.J.3
  • 8
    • 17444397116 scopus 로고    scopus 로고
    • Porter: A new, accurate server for protein secondary structure prediction
    • Pollastri, G.; McLysaght, A. Porter: A new, accurate server for protein secondary structure prediction. Bioinformatics 2005, 21, 1719-1720.
    • (2005) Bioinformatics , vol.21 , pp. 1719-1720
    • Pollastri, G.1    McLysaght, A.2
  • 9
    • 3242887525 scopus 로고    scopus 로고
    • A web server for secondary structure assignment from known atomic coordinates of proteins
    • Heinig, M.; Frishman, D. STRIDE: A web server for secondary structure assignment from known atomic coordinates of proteins. Nucleic Acids Res. 2004, 32, W500-W502.
    • (2004) Nucleic Acids Res , vol.32
    • Heinig, M.1    Frishman, D.S.2
  • 11
    • 80855147432 scopus 로고    scopus 로고
    • Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement
    • Xu, D.; Zhang, J.; Roy, A.; Zhang, Y. Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement. Proteins Struct. Funct. Bioinform. 2011, 79 (Suppl. S10), 147-160.
    • (2011) Proteins Struct. Funct. Bioinform , vol.79 , Issue.SUPPL. S10 , pp. 147-160
    • Xu, D.1    Zhang, J.2    Roy, A.3    Zhang, Y.4
  • 15
    • 39449115394 scopus 로고    scopus 로고
    • I-TASSER server for protein 3D structure prediction
    • Zhang, Y. I-TASSER server for protein 3D structure prediction. BMC Bioinform. 2008, 9, 40.
    • (2008) BMC Bioinform , vol.9 , pp. 40
    • Zhang, Y.1
  • 16
    • 33845678630 scopus 로고    scopus 로고
    • Bhageerath: An energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins
    • Jayaram, B.; Bhushan, K.; Shenoy, S.R.; Narang, P.; Bose, S.; Agrawal, P.; Sahu, D.; Pandey, V. Bhageerath: An energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins. Nucleic Acids Res. 2006, 34, 6195-6204.
    • (2006) Nucleic Acids Res , vol.34 , pp. 6195-6204
    • Jayaram, B.1    Bhushan, K.2    Shenoy, S.R.3    Narang, P.4    Bose, S.5    Agrawal, P.6    Sahu, D.7    Pandey, V.8
  • 17
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R.A.; MacArthur, M.W.; Moss, D.S.; Thornton, J.M. PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 1993, 26, 283-291.
    • (1993) J. Appl. Crystallogr , vol.26 , pp. 283-291
    • Laskowski, R.A.1    Macarthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 18
    • 0030767485 scopus 로고    scopus 로고
    • VERIFY3D: Assessment of protein models with three-dimensional profiles
    • Eisenberg, D.; Lüthy, R.; Bowie, J.U. VERIFY3D: Assessment of protein models with three-dimensional profiles. Methods Enzymol. 1997, 277, 396-404.
    • (1997) Methods Enzymol , vol.277 , pp. 396-404
    • Eisenberg, D.1    Lüthy, R.2    Bowie, J.U.3
  • 19
    • 0027180507 scopus 로고
    • Verification of protein structures: Patterns of nonbonded atomic interactions
    • Colovos, C.; Yeates, T.O. Verification of protein structures: Patterns of nonbonded atomic interactions. Protein Sci. 1993, 2, 1511-1519.
    • (1993) Protein Sci , vol.2 , pp. 1511-1519
    • Colovos, C.1    Yeates, T.O.2
  • 20
    • 77954293798 scopus 로고    scopus 로고
    • CPHmodels-3.0-Remote homology modeling using structure-guided sequence profiles
    • Nielsen, M.; Lundegaard, C.; Lund, O.; Petersen, T.N. CPHmodels-3.0-Remote homology modeling using structure-guided sequence profiles. Nucleic Acids Res. 2010, 38, W576-W581.
    • (2010) Nucleic Acids Res , vol.38
    • Nielsen, M.1    Lundegaard, C.2    Lund, O.3    Petersen, T.N.4
  • 21
    • 34547566446 scopus 로고    scopus 로고
    • ProSA-web: Interactive web service for the recognition of errors in three-dimensional structures of proteins
    • Wiederstein, M.; Sippl, M.J. ProSA-web: Interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Res. 2007, 35, W407-W410.
    • (2007) Nucleic Acids Res , vol.35
    • Wiederstein, M.1    Sippl, M.J.2
  • 22
    • 0032540222 scopus 로고    scopus 로고
    • Assessing protein structures with a non-local atomic interaction energy
    • Melo, F.; Feytmans, E. Assessing protein structures with a non-local atomic interaction energy. J. Mol. Biol. 1998, 277, 1141-1152.
    • (1998) J. Mol. Biol , vol.277 , pp. 1141-1152
    • Melo, F.1    Feytmans, E.2
  • 27
    • 22544441094 scopus 로고    scopus 로고
    • ProFunc: A server for predicting protein function from 3D structure
    • Laskowski, R.A.; Watson, J.D.; Thornton, J.M. ProFunc: A server for predicting protein function from 3D structure. Nucleic Acids Res. 2005, 33, W89-W93.
    • (2005) Nucleic Acids Res , vol.33
    • Laskowski, R.A.1    Watson, J.D.2    Thornton, J.M.3
  • 28
    • 77249173864 scopus 로고    scopus 로고
    • The C-terminal lysine of Ogg2 DNA glycosylases is a major molecular determinant for guanine/8-oxoguanine distinction
    • Faucher, F.; Wallace, S.S.; Doublié, S. The C-terminal lysine of Ogg2 DNA glycosylases is a major molecular determinant for guanine/8-oxoguanine distinction. J. Mol. Biol. 2010, 397, 46-56.
    • (2010) J. Mol. Biol , vol.397 , pp. 46-56
    • Faucher, F.1    Wallace, S.S.2    Doublié, S.3
  • 29
    • 65149095677 scopus 로고    scopus 로고
    • Crystal structures of two archaeal 8-oxoguanine DNA glycosylases provide structural insight into guanine/8-oxoguanine distinction
    • Faucher, F.; Duclos, S.; Bandaru, V.; Wallace, S.S.; Doublié, S. Crystal structures of two archaeal 8-oxoguanine DNA glycosylases provide structural insight into guanine/8-oxoguanine distinction. Structure 2009, 17, 703-712.
    • (2009) Structure , vol.17 , pp. 703-712
    • Faucher, F.1    Duclos, S.2    Bandaru, V.3    Wallace, S.S.4    Doublié, S.5
  • 30
    • 48549093368 scopus 로고    scopus 로고
    • MSDmotif: Exploring protein sites and motifs
    • Golovin, A.; Henrick, K. MSDmotif: Exploring protein sites and motifs. BMC Bioinform. 2008, 9, 312.
    • (2008) BMC Bioinform , vol.9 , pp. 312
    • Golovin, A.1    Henrick, K.2
  • 34
    • 34548301416 scopus 로고    scopus 로고
    • Prediction of linear B-cell epitopes using amino acid pair antigenicity scale
    • Chen, J.; Liu, H.; Yang, J.; Chou, K.C. Prediction of linear B-cell epitopes using amino acid pair antigenicity scale. Amino Acids 2007, 33, 423-428.
    • (2007) Amino Acids , vol.33 , pp. 423-428
    • Chen, J.1    Liu, H.2    Yang, J.3    Chou, K.C.4
  • 35
    • 33751104704 scopus 로고    scopus 로고
    • Improved method for predicting linear B-cell epitopes
    • Larsen, J.; Lund, O.; Nielsen, M. Improved method for predicting linear B-cell epitopes. Immunome Res. 2006, 2, 2.
    • (2006) Immunome Res , vol.2 , pp. 2
    • Larsen, J.1    Lund, O.2    Nielsen, M.3
  • 36
    • 84872049601 scopus 로고    scopus 로고
    • Reliable B cell epitope predictions: Impacts of method development and improved benchmarking
    • Kringelum, J.V.; Lundegaard, C.; Lund, O.; Nielsen, M. Reliable B cell epitope predictions: Impacts of method development and improved benchmarking. PLoS Comput. Biol. 2012, 8, e1002829.
    • (2012) PLoS Comput. Biol , vol.8
    • Kringelum, J.V.1    Lundegaard, C.2    Lund, O.3    Nielsen, M.4
  • 37
    • 33751099863 scopus 로고    scopus 로고
    • Prediction of residues in discontinuous B-cell epitopes using protein 3D structures
    • Haste Andersen, P.; Nielsen, M.; Lund, O. Prediction of residues in discontinuous B-cell epitopes using protein 3D structures. Protein Sci. 2006, 15, 2558-2567.
    • (2006) Protein Sci , vol.15 , pp. 2558-2567
    • Haste Andersen, P.1    Nielsen, M.2    Lund, O.3
  • 38
    • 84864485292 scopus 로고    scopus 로고
    • ProBiS-2012: Web server and web services for detection of structurally similar binding sites in proteins
    • Konc, J.; Janežič, D. ProBiS-2012: Web server and web services for detection of structurally similar binding sites in proteins. Nucleic Acids Res. 2012, 40, W214-W221.
    • (2012) Nucleic Acids Res , vol.40
    • Konc, J.1    Janežič, D.2
  • 40
    • 79953281433 scopus 로고    scopus 로고
    • Structural and functional studies of a 50 kda antigenic protein from Salmonella enterica serovar Typhi
    • Choong, Y.S.; Lim, T.S.; Chew, A.L.; Aziah, I.; Ismail, A. Structural and functional studies of a 50 kda antigenic protein from Salmonella enterica serovar Typhi. J. Mol. Graph. Model. 2011, 29, 834-842.
    • (2011) J. Mol. Graph. Model , vol.29 , pp. 834-842
    • Choong, Y.S.1    Lim, T.S.2    Chew, A.L.3    Aziah, I.4    Ismail, A.5
  • 41
    • 0037339236 scopus 로고    scopus 로고
    • Detection of unrelated proteins in sequences multiple alignments by using predicted secondary structures
    • Errami, M.; Geourjon, C.; Deléage, G. Detection of unrelated proteins in sequences multiple alignments by using predicted secondary structures. Bioinformatics 2003, 19, 506-512.
    • (2003) Bioinformatics , vol.19 , pp. 506-512
    • Errami, M.1    Geourjon, C.2    Deléage, G.3
  • 42
    • 61849129612 scopus 로고    scopus 로고
    • Combination of several bioinformatics approaches for the identification of new putative glycosyltransferases in arabidopsis
    • Hansen, S.F.; Bettler, E.; Wimmerová, M.; Imberty, A.; Lerouxel, O.; Breton, C. Combination of several bioinformatics approaches for the identification of new putative glycosyltransferases in arabidopsis. J. Proteome Res. 2008, 8, 743-753.
    • (2008) J. Proteome Res , vol.8 , pp. 743-753
    • Hansen, S.F.1    Bettler, E.2    Wimmerová, M.3    Imberty, A.4    Lerouxel, O.5    Breton, C.6
  • 44
    • 49649114605 scopus 로고    scopus 로고
    • Protein structure modeling with MODELLER
    • Kobe, B., Guss, M., Huber, T., Eds.; Humana Press: New York City, NY, USA
    • Eswar, N.; Eramian, D.; Webb, B.; Shen, M.-Y.; Sali, A. Protein structure modeling with MODELLER. In Structural Proteomics; Kobe, B., Guss, M., Huber, T., Eds.; Humana Press: New York City, NY, USA, 2008; Volume 426, pp. 145-159.
    • (2008) Structural Proteomics , vol.426 , pp. 145-159
    • Eswar, N.1    Eramian, D.2    Webb, B.3    Shen, M.-Y.4    Sali, A.5
  • 45
    • 84873864473 scopus 로고    scopus 로고
    • Exoproteome and secretome derived broad spectrum novel drug and vaccine candidates in Vibrio cholerae targeted by piper betel/derived compounds
    • Barh, D.; Barve, N.; Gupta, K.; Chandra, S.; Jain, N.; Tiwari, S.; Leon-Sicairos, N.; Canizalez-Roman, A.; Rodrigues dos Santos, A.; Hassan, S.S. et al. Exoproteome and secretome derived broad spectrum novel drug and vaccine candidates in Vibrio cholerae targeted by piper betel/derived compounds. PLoS One 2013, 8, e52773.
    • (2013) PLoS One , vol.8
    • Barh, D.1    Barve, N.2    Gupta, K.3    Chandra, S.4    Jain, N.5    Tiwari, S.6    Leon-Sicairos, N.7    Canizalez-Roman, A.8    Rodrigues, S.A.9    Hassan, S.S.10
  • 46
    • 32144432437 scopus 로고    scopus 로고
    • The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
    • Arnold, K.; Bordoli, L.; Kopp, J.; Schwede, T. The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling. Bioinformatics 2006, 22, 195-201.
    • (2006) Bioinformatics , vol.22 , pp. 195-201
    • Arnold, K.1    Bordoli, L.2    Kopp, J.3    Schwede, T.4
  • 47
    • 0035747672 scopus 로고    scopus 로고
    • Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM
    • Bates, P.A.; Kelley, L.A.; MacCallum, R.M.; Sternberg, M.J.E. Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM. Proteins Struct. Funct. Bioinform. 2001, 45, 39-46.
    • (2001) Proteins Struct. Funct. Bioinform , vol.45 , pp. 39-46
    • Bates, P.A.1    Kelley, L.A.2    Maccallum, R.M.3    Sternberg, M.J.E.4
  • 49
    • 0036172167 scopus 로고    scopus 로고
    • Geno3D: Automatic comparative molecular modelling of protein
    • Combet, C.; Jambon, M.; Deléage, G.; Geourjon, C. Geno3D: Automatic comparative molecular modelling of protein. Bioinformatics 2002, 18, 213-214.
    • (2002) Bioinformatics , vol.18 , pp. 213-214
    • Combet, C.1    Jambon, M.2    Deléage, G.3    Geourjon, C.4
  • 50
    • 84863864586 scopus 로고    scopus 로고
    • Accurate prediction of protein structural classes using functional domains and predicted secondary structure sequences
    • Ahmadi Adl, A.; Nowzari-Dalini, A.; Xue, B.; Uversky, V.N.; Qian, X. Accurate prediction of protein structural classes using functional domains and predicted secondary structure sequences. J. Biomol. Struct. Dyn. 2012, 29, 1127-1137.
    • (2012) J. Biomol. Struct. Dyn , vol.29 , pp. 1127-1137
    • Ahmadi, A.A.1    Nowzari-Dalini, A.2    Xue, B.3    Uversky, V.N.4    Qian, X.5
  • 51
    • 78649774404 scopus 로고    scopus 로고
    • Improving protein secondary structure prediction based on short subsequences with local structure similarity
    • Lin, H.-N.; Sung, T.-Y.; Ho, S.-Y.; Hsu, W.-L. Improving protein secondary structure prediction based on short subsequences with local structure similarity. BMC Genomics 2010, 11, S4.
    • (2010) BMC Genomics , vol.11
    • Lin, H.-N.1    Sung, T.-Y.2    Ho, S.-Y.3    Hsu, W.-L.4
  • 52
    • 84864032316 scopus 로고    scopus 로고
    • In Protein secondary structure prediction using blast and exhaustive rt-rico, the search for optimal segment length and threshold. In Proceedings of the
    • San Diego, CA, USA, 9-12 May
    • Lee, L.; Leopold, J.L.; Frank, R.L. In Protein secondary structure prediction using blast and exhaustive rt-rico, the search for optimal segment length and threshold. In Proceedings of the 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), San Diego, CA, USA, 9-12 May 2012; pp. 35-42.
    • (2012) IEEE Symposium On Computational Intelligence In Bioinformatics and Computational Biology (CIBCB) , pp. 35-42
    • Lee, L.1    Leopold, J.L.2    Frank, R.L.3
  • 54
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • Notredame, C.; Higgins, D.G.; Heringa, J. T-Coffee: A novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 2000, 302, 205-217.
    • (2000) J. Mol. Biol , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 55
    • 84878768610 scopus 로고    scopus 로고
    • Molecular characterization and functions of fatty acid and retinoid binding protein gene (Ab-far-1) in Aphelenchoides besseyi
    • Cheng, X.; Xiang, Y.; Xie, H.; Xu, C.-L.; Xie, T.-F.; Zhang, C.; Li, Y. Molecular characterization and functions of fatty acid and retinoid binding protein gene (Ab-far-1) in Aphelenchoides besseyi. PLoS One 2013, 8, e66011.
    • (2013) PLoS One , vol.8
    • Cheng, X.1    Xiang, Y.2    Xie, H.3    Xu, C.-L.4    Xie, T.-F.5    Zhang, C.6    Li, Y.7
  • 56
    • 85067773033 scopus 로고    scopus 로고
    • The potential role of binding proteins in human parasitic infections: An in-depth look at the novel family of nematode-specific fatty acid and retinol binding proteins
    • Abdelmohsen, K., Ed.; InTech: Rijeka, Croatia
    • Jennifer, L.B.; Amber, E.F. The potential role of binding proteins in human parasitic infections: An in-depth look at the novel family of nematode-specific fatty acid and retinol binding proteins. In Binding Protein; Abdelmohsen, K., Ed.; InTech: Rijeka, Croatia, 2012.
    • (2012) Binding Protein
    • Jennifer, L.B.1    Amber, E.F.2
  • 57
    • 70349776075 scopus 로고    scopus 로고
    • Characterisation of a fatty acid and retinol binding protein orthologue from the hookworm Ancylostoma ceylanicum
    • Fairfax, K.C.; Vermeire, J.J.; Harrison, L.M.; Bungiro, R.D.; Grant, W.; Husain, S.Z.; Cappello, M. Characterisation of a fatty acid and retinol binding protein orthologue from the hookworm Ancylostoma ceylanicum. Int. J. Parasitol. 2009, 39, 1561-1571.
    • (2009) Int. J. Parasitol , vol.39 , pp. 1561-1571
    • Fairfax, K.C.1    Vermeire, J.J.2    Harrison, L.M.3    Bungiro, R.D.4    Grant, W.5    Husain, S.Z.6    Cappello, M.7
  • 58
    • 56249104176 scopus 로고    scopus 로고
    • Stage and gender-specific proteomic analysis of Brugia malayi excretory-secretory products
    • Moreno, Y.; Geary, T.G. Stage and gender-specific proteomic analysis of Brugia malayi excretory-secretory products. PLoS Negl. Trop. Dis. 2008, 2, e326.
    • (2008) PLoS Negl. Trop. Dis , vol.2
    • Moreno, Y.1    Geary, T.G.2
  • 59
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa, A.; Götz, S.; García-Gómez, J.M.; Terol, J.; Talón, M.; Robles, M. Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21, 3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gómez, J.M.3    Terol, J.4    Talón, M.5    Robles, M.6
  • 60
    • 65549088510 scopus 로고    scopus 로고
    • Brugia malayi excreted/secreted proteins at the host/parasite interface: Stage and gender-specific proteomic profiling
    • Bennuru, S.; Semnani, R.; Meng, Z.; Ribeiro, J.M.C.; Veenstra, T.D.; Nutman, T.B. Brugia malayi excreted/secreted proteins at the host/parasite interface: Stage and gender-specific proteomic profiling. PLoS Negl. Trop. Dis. 2009, 3, e410.
    • (2009) PLoS Negl. Trop. Dis , vol.3
    • Bennuru, S.1    Semnani, R.2    Meng, Z.3    Ribeiro, J.M.C.4    Veenstra, T.D.5    Nutman, T.B.6
  • 61
    • 72149128900 scopus 로고    scopus 로고
    • Fatty acid and retinoid-binding proteins have distinct binding pockets for the two types of cargo
    • Jordanova, R.; Groves, M.R.; Kostova, E.; Woltersdorf, C.; Liebau, E.; Tucker, P.A. Fatty acid and retinoid-binding proteins have distinct binding pockets for the two types of cargo. J. Biol. Chem. 2009, 284, 35818-35826.
    • (2009) J. Biol. Chem , vol.284 , pp. 35818-35826
    • Jordanova, R.1    Groves, M.R.2    Kostova, E.3    Woltersdorf, C.4    Liebau, E.5    Tucker, P.A.6
  • 62
    • 0030682113 scopus 로고    scopus 로고
    • The Ov20 protein of the parasitic nematode Onchocerca volvulus: A structurally novel class of small helix-rich retinol-binding proteins
    • Kennedy, M.W.; Garside, L.H.; Goodrick, L.E.; McDermott, L.; Brass, A.; Price, N.C.; Kelly, S.M.; Cooper, A.; Bradley, J.E. The Ov20 protein of the parasitic nematode Onchocerca volvulus: A structurally novel class of small helix-rich retinol-binding proteins. J. Biol. Chem. 1997, 272, 29442-29448.
    • (1997) J. Biol. Chem , vol.272 , pp. 29442-29448
    • Kennedy, M.W.1    Garside, L.H.2    Goodrick, L.E.3    McDermott, L.4    Brass, A.5    Price, N.C.6    Kelly, S.M.7    Cooper, A.8    Bradley, J.E.9
  • 64
    • 0022446684 scopus 로고
    • Continuous and discontinuous protein antigenic determinants
    • Barlow, D.J.; Edwards, M.S.; Thornton, J.M. Continuous and discontinuous protein antigenic determinants. Nature 1986, 322, 747-748.
    • (1986) Nature , vol.322 , pp. 747-748
    • Barlow, D.J.1    Edwards, M.S.2    Thornton, J.M.3
  • 66
    • 84907249485 scopus 로고    scopus 로고
    • Prediction of B-cell linear epitopes with a combination of support vector machine classification and amino acid propensity identification
    • Wang, H.-W.; Lin, Y.-C.; Pai, T.-W.; Chang, H.-T. Prediction of B-cell linear epitopes with a combination of support vector machine classification and amino acid propensity identification. J. Biomed. Biotechnol. 2011, 2011, 12.
    • (2011) J. Biomed. Biotechnol , vol.2011 , pp. 12
    • Wang, H.-W.1    Lin, Y.-C.2    Pai, T.-W.3    Chang, H.-T.4
  • 67
    • 3242887157 scopus 로고    scopus 로고
    • CD-search: Protein domain annotations on the fly
    • Marchler-Bauer, A.; Bryant, S.H. CD-search: Protein domain annotations on the fly. Nucleic Acids Res. 2004, 32, W327-W331.
    • (2004) Nucleic Acids Res , vol.32
    • Marchler-Bauer, A.1    Bryant, S.H.2
  • 70
    • 58149194624 scopus 로고    scopus 로고
    • Smart 6: Recent updates and new developments
    • Letunic, I.; Doerks, T.; Bork, P. Smart 6: Recent updates and new developments. Nucleic Acids Res. 2009, 37, D229-D232.
    • (2009) Nucleic Acids Res , vol.37
    • Letunic, I.1    Doerks, T.2    Bork, P.3
  • 74
    • 41149152855 scopus 로고    scopus 로고
    • Biochemical and structural basis for feedback inhibition of mevalonate kinase and isoprenoid metabolism
    • Fu, Z.; Voynova, N.E.; Herdendorf, T.J.; Miziorko, H.M.; Kim, J.-J.P. Biochemical and structural basis for feedback inhibition of mevalonate kinase and isoprenoid metabolism. Biochemistry 2008, 47, 3715-3724.
    • (2008) Biochemistry , vol.47 , pp. 3715-3724
    • Fu, Z.1    Voynova, N.E.2    Herdendorf, T.J.3    Miziorko, H.M.4    Kim, J.-J.P.5
  • 75
    • 3242887695 scopus 로고    scopus 로고
    • Protein structure prediction and analysis using the Robetta server
    • Kim, D.E.; Chivian, D.; Baker, D. Protein structure prediction and analysis using the Robetta server. Nucleic Acids Res. 2004, 32, W526-W531.
    • (2004) Nucleic Acids Res , vol.32
    • Kim, D.E.1    Chivian, D.2    Baker, D.3
  • 78
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert, J.-P.; Ciccotti, G.; Berendsen, H. Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes. J. Comput. Phys. 1977, 23, 327-341.
    • (1977) J. Comput. Phys , vol.23 , pp. 327-341
    • Ryckaert, J.-P.1    Ciccotti, G.2    Berendsen, H.3
  • 79
    • 84885655034 scopus 로고    scopus 로고
    • Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment
    • Yang, J.; Roy, A.; Zhang, Y. Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics 2013, 29, 2588-2595.
    • (2013) Bioinformatics , vol.29 , pp. 2588-2595
    • Yang, J.1    Roy, A.2    Zhang, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.