-
1
-
-
0032900496
-
Prediction of location and type of beta-turns in proteins using neural network
-
2144340 10338015
-
Shepherd AJ Gorse D Thornton JM Prediction of location and type of beta-turns in proteins using neural network Protein Science 1999, 8(5):1045-55 2144340 10338015
-
(1999)
Protein Science
, vol.8
, Issue.5
, pp. 1045-1055
-
-
Shepherd, A.J.1
Gorse, D.2
Thornton, J.M.3
-
2
-
-
8844252295
-
A neural network method for prediction of beta-turn types in proteins using evolutionary information
-
15145798
-
Kaur H Raghava GP A neural network method for prediction of beta-turn types in proteins using evolutionary information Bioinformatics 2004, 20(16):2751-8 15145798
-
(2004)
Bioinformatics
, vol.20
, Issue.16
, pp. 2751-2758
-
-
Kaur, H.1
Raghava, G.P.2
-
3
-
-
0021844602
-
Beta-hairpin families in globular proteins
-
4010788
-
Sibanda BL Thornton JM Beta-hairpin families in globular proteins Nature 1985, 316:170-174 4010788
-
(1985)
Nature
, vol.316
, pp. 170-174
-
-
Sibanda, B.L.1
Thornton, J.M.2
-
5
-
-
0035239222
-
The cystine knot motif in toxins and implications for drug design
-
10936622
-
Craik DJ Daly NL Waine C The cystine knot motif in toxins and implications for drug design Toxicon 2001, 39(1):43-60 10936622
-
(2001)
Toxicon
, vol.39
, Issue.1
, pp. 43-60
-
-
Craik, D.J.1
Daly, N.L.2
Waine, C.3
-
6
-
-
0033954256
-
The Protein Data Bank
-
102472 10592235
-
Berman HM Westbrook J Feng Z Gilliland G Bhat TN Weissig H Shindyalov IN Bourne PE The Protein Data Bank Nucleic Acids Research 2000, 28:235-242 102472 10592235
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
9
-
-
0026651391
-
Rapid and sensitive sequence comparison with FASTP and FASTA
-
1584052
-
Pearson WR Rapid and sensitive sequence comparison with FASTP and FASTA Methods Enzymol 1992, 210:575-601 1584052
-
(1992)
Methods Enzymol
, vol.210
, pp. 575-601
-
-
Pearson, W.R.1
-
10
-
-
0041386069
-
ClustalW analysis using distributed and parallel computing
-
12912844
-
Li KB ClustalW analysis using distributed and parallel computing Bioinformatics 2003, 19(12):1585-6 12912844
-
(2003)
Bioinformatics
, vol.19
, Issue.12
, pp. 1585-1586
-
-
Li, K.B.1
-
11
-
-
0031901903
-
Methods and statistics for combining motif match scores
-
9672829
-
Bailey TL Gribskov M Methods and statistics for combining motif match scores Journal of Computational Biology 1998, 5:211-221 9672829
-
(1998)
Journal of Computational Biology
, vol.5
, pp. 211-221
-
-
Bailey, T.L.1
Gribskov, M.2
-
12
-
-
0346869047
-
Recent improvements to the PROSITE database
-
Hulo N Sigrist CJA Le SV Langendijk-Genevaux PS Bordoli L Gattiker A De CE Bucher P Bairoch A Recent improvements to the PROSITE database Nucleic Acids Research 2004, 32:134-137
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 134-137
-
-
Hulo, N.1
Sigrist, C.J.A.2
Le, S.V.3
Langendijk-Genevaux, P.S.4
Bordoli, L.5
Gattiker, A.6
De, C.E.7
Bucher, P.8
Bairoch, A.9
-
13
-
-
0015530828
-
Protein Folding
-
5037986
-
Kuntz ID Protein Folding J Am Chem Soc 1972, 94:4009-4012 5037986
-
(1972)
J Am Chem Soc
, vol.94
, pp. 4009-4012
-
-
Kuntz, I.D.1
-
14
-
-
18644380729
-
Sites for phospatates and iron-sulfur thiolates in the first membranes: 3 to 6 residue anion-binding motifs (nests)
-
15889648
-
Milner-White EJ Russell MJ Sites for phospatates and iron-sulfur thiolates in the first membranes: 3 to 6 residue anion-binding motifs (nests) Orig Life Evol Biosph 2005, 35(1):19-27 15889648
-
(2005)
Orig Life Evol Biosph
, vol.35
, Issue.1
, pp. 19-27
-
-
Milner-White, E.J.1
Russell, M.J.2
-
15
-
-
0036293842
-
A novel main-chain anion-binding site in proteins: The nest a particular combination of φ/ψ values in successive residue gives rise to anion-binding sites that occur commonly and are found often at functionally important regions
-
Watson JD Milner-White EJ A novel main-chain anion-binding site in proteins: The nest a particular combination of φ/ψ values in successive residue gives rise to anion-binding sites that occur commonly and are found often at functionally important regions J Mol Biol 2001, 315:171-182
-
(2001)
J Mol Biol
, vol.315
, pp. 171-182
-
-
Watson, J.D.1
Milner-White, E.J.2
-
16
-
-
31944434043
-
Conversion of type I 4:6 to 3:5 beta-turn types in human acidic fibroblast growth factor: Effects upon structure, stability, folding, and mitogenic function
-
16355415
-
Lee J Dubey VK Somasundaram T Blaber M Conversion of type I 4:6 to 3:5 beta-turn types in human acidic fibroblast growth factor: Effects upon structure, stability, folding, and mitogenic function Proteins 2006, 62(3):686-97 16355415
-
(2006)
Proteins
, vol.62
, Issue.3
, pp. 686-697
-
-
Lee, J.1
Dubey, V.K.2
Somasundaram, T.3
Blaber, M.4
-
17
-
-
0034769527
-
Peptide-plane flipping in proteins
-
2374056 11604529
-
Hayward S Peptide-plane flipping in proteins Protein Science 2001, 10:2219-27 2374056 11604529
-
(2001)
Protein Science
, vol.10
, pp. 2219-2227
-
-
Hayward, S.1
-
18
-
-
0023667797
-
Beta-bulges within loops as recurring features of protein structure
-
3801498
-
Milner-White EJ Beta-bulges within loops as recurring features of protein structure Biochimica et Biophysica Acta 1987, 911:261-265 3801498
-
(1987)
Biochimica Et Biophysica Acta
, vol.911
, pp. 261-265
-
-
Milner-White, E.J.1
-
19
-
-
0027327319
-
Common ring motifs in proteins involving asparagine or glutamine amide groups hydrogen-bonded to main-chain atoms
-
8515458
-
Questel JYL Morris DG Maccallum PH Poet R Milner-White EJ Common ring motifs in proteins involving asparagine or glutamine amide groups hydrogen-bonded to main-chain atoms J Mol Biol 1993, 231:888-896 8515458
-
(1993)
J Mol Biol
, vol.231
, pp. 888-896
-
-
Questel, J.Y.L.1
Morris, D.G.2
Maccallum, P.H.3
Poet, R.4
Milner-White, E.J.5
-
20
-
-
0036289154
-
The conformations of polypeptide chains where the main-chain parts of successive residues are enantiomeric. Their occurence in cation and anion-binding regions of proteins
-
11779238
-
Watson JD Milner-White EJ The conformations of polypeptide chains where the main-chain parts of successive residues are enantiomeric. Their occurence in cation and anion-binding regions of proteins J Mol Biol 2002, 315:183-191 11779238
-
(2002)
J Mol Biol
, vol.315
, pp. 183-191
-
-
Watson, J.D.1
Milner-White, E.J.2
-
21
-
-
0000302360
-
Loops, bulges, turns and hairpins in proteins
-
Milner-White EJ Poet R Loops, bulges, turns and hairpins in proteins Trends Biochem Sci 1987, 12:189-192
-
(1987)
Trends Biochem Sci
, vol.12
, pp. 189-192
-
-
Milner-White, E.J.1
Poet, R.2
-
22
-
-
7244262067
-
Mimicry by asx- and ST-turns of the four main types of beta-turn in proteins
-
2286581 15459339
-
Duddy WJ Nissink JWM Allen FH Milner-White EJ Mimicry by asx- and ST-turns of the four main types of beta-turn in proteins Protein Science 2004, 13:3051-55 2286581 15459339
-
(2004)
Protein Science
, vol.13
, pp. 3051-3055
-
-
Duddy, W.J.1
Nissink, J.W.M.2
Allen, F.H.3
Milner-White, E.J.4
-
24
-
-
0025974401
-
Structure of alpha-alpha-hairpins with short connections
-
1649997
-
Efimov AV Structure of alpha-alpha-hairpins with short connections Protein Eng 1991, 4(3):245-250 1649997
-
(1991)
Protein Eng
, vol.4
, Issue.3
, pp. 245-250
-
-
Efimov, A.V.1
-
25
-
-
0025803604
-
Structure of beta-beta-hairpins and beta-beta-corners
-
2060653
-
Efimov AV Structure of beta-beta-hairpins and beta-beta-corners FEBS Lett 1991, 284:288-292 2060653
-
(1991)
FEBS Lett
, vol.284
, pp. 288-292
-
-
Efimov, A.V.1
-
26
-
-
10844282814
-
MSDsite: A Database Search and Retrieval System for the Analysis and Viewing of Bound Ligands and Active Sites
-
15468317
-
Golovin A Dimitropoulos D Oldfield T Rachedi A Henrick K MSDsite: A Database Search and Retrieval System for the Analysis and Viewing of Bound Ligands and Active Sites Proteins 2005, 58(1):190-9 15468317
-
(2005)
Proteins
, vol.58
, Issue.1
, pp. 190-199
-
-
Golovin, A.1
Dimitropoulos, D.2
Oldfield, T.3
Rachedi, A.4
Henrick, K.5
-
27
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
9254694 146917
-
Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids Res 1997, 25(17):3389-3402 9254694 146917
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
28
-
-
0037339462
-
Protein fragment clustering and canonical local shapes
-
12577264
-
Hunter CG Subramaniam S Protein fragment clustering and canonical local shapes Proteins 2003, 50:580-588 12577264
-
(2003)
Proteins
, vol.50
, pp. 580-588
-
-
Hunter, C.G.1
Subramaniam, S.2
-
29
-
-
9144231249
-
E-MSD: An integrated data resource for bioinformatics
-
308812 14681397
-
Golovin A Oldfield TJ Tate JG Velankar S Barton GJ Boutselakis H Dimitropoulos D Fillon J Hussain A Ionides JMC John M Keller PA Krissinel E McNeil P Naim A Newman R Pajon A Pineda J Rachedi A Copeland J Sitnov A Sobhany S Suarez-Uruena A Swaminathan J Tagari M Tromm S Vranken W Henrick K E-MSD: An integrated data resource for bioinformatics Nucleic Acids Research 2004, 32:D211-D216 308812 14681397
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Golovin, A.1
Oldfield, T.J.2
Tate, J.G.3
Velankar, S.4
Barton, G.J.5
Boutselakis, H.6
Dimitropoulos, D.7
Fillon, J.8
Hussain, A.9
Ionides, J.M.C.10
John, M.11
Keller, P.A.12
Krissinel, E.13
McNeil, P.14
Naim, A.15
Newman, R.16
Pajon, A.17
Pineda, J.18
Rachedi, A.19
Copeland, J.20
Sitnov, A.21
Sobhany, S.22
Suarez-Uruena, A.23
Swaminathan, J.24
Tagari, M.25
Tromm, S.26
Vranken, W.27
Henrick, K.28
more..
-
30
-
-
0037246807
-
E-MSD: The European Bioinformatics Institute Macromolecular Structure Database
-
165512 12520052
-
Boutselakis H Copeland J Dimitropoulos D Fillon J Golovin A Henrick K Hussain A Ionides JMC John M Keller P Krissnel E McNeil P Naim A Newman R Oldfield TJ Pineda J Rachedi A Sitnov A Sobhany S Suarez-Uruena A Swaminathan J Tagari M Tate J Tromm S Velankar S Vranken W E-MSD: The European Bioinformatics Institute Macromolecular Structure Database Nucleic Acids Research 2003, 31:458-462 165512 12520052
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 458-462
-
-
Boutselakis, H.1
Copeland, J.2
Dimitropoulos, D.3
Fillon, J.4
Golovin, A.5
Henrick, K.6
Hussain, A.7
Ionides, J.M.C.8
John, M.9
Keller, P.10
Krissnel, E.11
McNeil, P.12
Naim, A.13
Newman, R.14
Oldfield, T.J.15
Pineda, J.16
Rachedi, A.17
Sitnov, A.18
Sobhany, S.19
Suarez-Uruena, A.20
Swaminathan, J.21
Tagari, M.22
Tate, J.23
Tromm, S.24
Velankar, S.25
Vranken, W.26
more..
-
31
-
-
22244450719
-
Protein families and their evolution - A structural perspective
-
15954844
-
Orengo CA Thornton JM Protein families and their evolution - A structural perspective Annual Review of Biochemistry 2005, 74:867-900 15954844
-
(2005)
Annual Review of Biochemistry
, vol.74
, pp. 867-900
-
-
Orengo, C.A.1
Thornton, J.M.2
-
32
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
7723011
-
Murzin AG Brenner SE Hubbard T Chothia C SCOP: A structural classification of proteins database for the investigation of sequences and structures J Mol Biol 1995, 247:536-540 7723011
-
(1995)
J Mol Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
33
-
-
33644876020
-
Pfam: Clans, web tools and services
-
1347511 16381856
-
Finn RD Mistry J Schuster-Böckler B Griffiths-Jones S Hollich V Lassmann T Moxon S Marshall M Khanna A Durbin R Eddy SR Sonnhammer ELL Bateman A Pfam: Clans, web tools and services Nucleic Acids Research 2006, 34:D247-D251 1347511 16381856
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Böckler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
Durbin, R.10
Eddy, S.R.11
Sonnhammer, E.L.L.12
Bateman, A.13
-
36
-
-
0028276887
-
A workbench for Large Scale Sequence Homology Analysis
-
Sonnhammer ELL Durbin R A workbench for Large Scale Sequence Homology Analysis Comput Applic Biosci 1994, 10:301-307
-
(1994)
Comput Applic Biosci
, vol.10
, pp. 301-307
-
-
Sonnhammer, E.L.L.1
Durbin, R.2
-
37
-
-
33644873213
-
The Universal Protein Resource (UniProt): An expanding universe of protein information
-
1347523 16381842
-
Wu CH Apweiler R Bairoch A Natale DA Barker WC Boeckmann B Ferro S Gasteiger E Huang H Lopez R Magrane M Martin MJ Mazumder R O'Donovan C Redaschi N Suzek B The Universal Protein Resource (UniProt): An expanding universe of protein information Nucleic Acids Research 2006, 34:D187-191 1347523 16381842
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Wu, C.H.1
Apweiler, R.2
Bairoch, A.3
Natale, D.A.4
Barker, W.C.5
Boeckmann, B.6
Ferro, S.7
Gasteiger, E.8
Huang, H.9
Lopez, R.10
Magrane, M.11
Martin, M.J.12
Mazumder, R.13
O'Donovan, C.14
Redaschi, N.15
Suzek, B.16
-
38
-
-
13444251422
-
Ensembl 2005
-
540092 15608235
-
Hubbard T Andrews D Caccamo M Cameron G Chen Y Clamp M Clarke L Coates G Cox T Cunningham F Curwen V Cutts T Down T Durbin R Fernandez-Suarez XM Gilbert J Hammond M Herrero J Hotz H Howe K Iyer V Jekosch K Kahari A Kasprzyk A Keefe D Keenan S Kokocinsci F London D Longden I McVicker G Melsopp C Meidl P Potter S Proctor G Rae M Rios D Schuster M Searle S Severin J Slater G Smedley D Smith J Spooner W Stabenau A Stalker J Storey R Trevanion S Ureta-Vidal A Vogel J White S Woodwark C Birney E Ensembl 2005 Nucleic Acids Research 2005, 33:D447-D453 540092 15608235
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Hubbard, T.1
Andrews, D.2
Caccamo, M.3
Cameron, G.4
Chen, Y.5
Clamp, M.6
Clarke, L.7
Coates, G.8
Cox, T.9
Cunningham, F.10
Curwen, V.11
Cutts, T.12
Down, T.13
Durbin, R.14
Fernandez-Suarez, X.M.15
Gilbert, J.16
Hammond, M.17
Herrero, J.18
Hotz, H.19
Howe, K.20
Iyer, V.21
Jekosch, K.22
Kahari, A.23
Kasprzyk, A.24
Keefe, D.25
Keenan, S.26
Kokocinsci, F.27
London, D.28
Longden, I.29
McVicker, G.30
Melsopp, C.31
Meidl, P.32
Potter, S.33
Proctor, G.34
Rae, M.35
Rios, D.36
Schuster, M.37
Searle, S.38
Severin, J.39
Slater, G.40
Smedley, D.41
Smith, J.42
Spooner, W.43
Stabenau, A.44
Stalker, J.45
Storey, R.46
Trevanion, S.47
Ureta-Vidal, A.48
Vogel, J.49
White, S.50
Woodwark, C.51
Birney, E.52
more..
-
40
-
-
84941143783
-
Calmodulin as a calcium sensor
-
Academic Press, San Diego Van Eldik LJ, Watterson DM
-
Nelson MR Chazin WJ Calmodulin as a calcium sensor Calmodulin and Signal Transduction Academic Press, San Diego Van Eldik LJ, Watterson DM 1998, 17-64
-
(1998)
Calmodulin and Signal Transduction
, pp. 17-64
-
-
Nelson, M.R.1
Chazin, W.J.2
-
44
-
-
0345864027
-
The Catalytic Site Atlas: A resource of catalytic sites and residues identified in enzymes using structural data
-
308762 14681376
-
Porter CT Bartlett GJ Thornton JM The Catalytic Site Atlas: A resource of catalytic sites and residues identified in enzymes using structural data Nucleic Acids Research 2004, 32:D129-D133 308762 14681376
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Porter, C.T.1
Bartlett, G.J.2
Thornton, J.M.3
-
45
-
-
0038820376
-
AstexViewerTM+: A visualisation aid for structure-based drug design
-
Hartshorn MJ AstexViewerTM+: A visualisation aid for structure-based drug design J Computer-Aided Molecular Design 2002, 16(12):871-881
-
(2002)
J Computer-Aided Molecular Design
, vol.16
, Issue.12
, pp. 871-881
-
-
Hartshorn, M.J.1
-
46
-
-
16644394791
-
A Java applet for multiple linked visualisation of protein structure and sequence
-
15562987
-
Oldfield TJ A Java applet for multiple linked visualisation of protein structure and sequence J Comput Aided Mol Des 2004, 18(4):225-234 15562987
-
(2004)
J Comput Aided Mol Des
, vol.18
, Issue.4
, pp. 225-234
-
-
Oldfield, T.J.1
-
49
-
-
23144453296
-
Integrating protein annotation resources through the Distributed Annotation System
-
Web Server 1160224 15980514
-
Olason PI Integrating protein annotation resources through the Distributed Annotation System Nucleic Acids Research 2005, 33: Web Server W468-70 1160224 15980514
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Olason, P.I.1
|