-
1
-
-
0033954256
-
The Protein Data Bank
-
Berman,H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
2
-
-
0036568279
-
Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles
-
Pollastri,G., Przybylski,D., Rost,B. and Baldi,P. (2002) Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins, 47, 228-235.
-
(2002)
Proteins
, vol.47
, pp. 228-235
-
-
Pollastri, G.1
Przybylski, D.2
Rost, B.3
Baldi, P.4
-
3
-
-
0036568293
-
Prediction of coordination number and relative solvent accessibility in proteins
-
Pollastri,G., Baldi,P., Fariselli,P. and Casadio,R. (2002) Prediction of coordination number and relative solvent accessibility in proteins. Proteins, 47, 142-153.
-
(2002)
Proteins
, vol.47
, pp. 142-153
-
-
Pollastri, G.1
Baldi, P.2
Fariselli, P.3
Casadio, R.4
-
4
-
-
84898931668
-
Large-scale prediction of disulphide bond connectivity
-
Baldi,P., Cheng,J. and Vullo,A. (2004) Large-scale prediction of disulphide bond connectivity. Adv. Neural Inf. Process Syst., 17, 97-104.
-
(2004)
Adv. Neural Inf. Process Syst.
, vol.17
, pp. 97-104
-
-
Baldi, P.1
Cheng, J.2
Vullo, A.3
-
5
-
-
0041719954
-
Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners
-
Pollastri,G. and Baldi,P. (2002) Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners. Bioinformatics, 18 (Suppl. 1), S62-S70.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Pollastri, G.1
Baldi, P.2
-
6
-
-
2542420004
-
The principled design of large-scale recursive neural network architectures - DAG-RNNs and the protein structure prediction problem
-
Baldi,P.F. and Pollastri,G. (2003) The principled design of large-scale recursive neural network architectures - DAG-RNNs and the protein structure prediction problem. J. Mach. Learn. Res., 4, 575-602.
-
(2003)
J. Mach. Learn. Res.
, vol.4
, pp. 575-602
-
-
Baldi, P.F.1
Pollastri, G.2
-
7
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
8
-
-
0024258385
-
Ichnology of the pleistocene ironshore formation, Grand Cayman Island, British West-Indies
-
Pemberton,S.G. and Jones,B. (1999) Ichnology of the pleistocene ironshore formation, Grand Cayman Island, British West-Indies. J. Paleontol., 62, 495.
-
(1999)
J. Paleontol.
, vol.62
, pp. 495
-
-
Pemberton, S.G.1
Jones, B.2
-
9
-
-
0036467068
-
Alignments grow, secondary structure prediction improves
-
Przybylski,D. and Rost,B. (2002) Alignments grow, secondary structure prediction improves. Proteins, 46, 197-205.
-
(2002)
Proteins
, vol.46
, pp. 197-205
-
-
Przybylski, D.1
Rost, B.2
-
10
-
-
0033985050
-
Assigning genomic sequences to CATH
-
Pearl,F.M., Lee,D., Bray,J.E., Sillitoe,I., Todd,A.E., Harrison,A.P., Thornton,J.M. and Orengo,C.A. (2000) Assigning genomic sequences to CATH. Nucleic Acids Res., 28, 277-282.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 277-282
-
-
Pearl, F.M.1
Lee, D.2
Bray, J.E.3
Sillitoe, I.4
Todd, A.E.5
Harrison, A.P.6
Thornton, J.M.7
Orengo, C.A.8
-
11
-
-
0031585984
-
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
-
Simons,K.T., Kooperberg,C., Huang,E. and Baker,D. (1997) Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions. J. Mol. Biol., 268, 209-225.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 209-225
-
-
Simons, K.T.1
Kooperberg, C.2
Huang, E.3
Baker, D.4
-
12
-
-
0032929780
-
Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins
-
Simons,K.T., Ruczinski,I., Kooperberg,C., Fox,B.A., Bystroff,C. and Baker,D. (1999) Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins. Proteins, 34, 82-95.
-
(1999)
Proteins
, vol.34
, pp. 82-95
-
-
Simons, K.T.1
Ruczinski, I.2
Kooperberg, C.3
Fox, B.A.4
Bystroff, C.5
Baker, D.6
-
13
-
-
0030627407
-
Recovery of protein structure from contact maps
-
Vendruscolo,M., Kussell,E. and Domany,E. (1997) Recovery of protein structure from contact maps. Fold Des., 2, 295-306.
-
(1997)
Fold Des.
, vol.2
, pp. 295-306
-
-
Vendruscolo, M.1
Kussell, E.2
Domany, E.3
-
14
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
15
-
-
0025978283
-
Database algorithm for generating protein backbone and side-chain co-ordinates from the C alpha trace application to model building and detection of co-ordinate errors
-
Holm,L. and Sander,C. (1991) Database algorithm for generating protein backbone and side-chain co-ordinates from the C alpha trace application to model building and detection of co-ordinate errors. J. Mol. Biol., 218, 183-194.
-
(1991)
J. Mol. Biol.
, vol.218
, pp. 183-194
-
-
Holm, L.1
Sander, C.2
-
16
-
-
0042511005
-
A graph-theory algorithm for rapid protein side-chain prediction
-
Canutescu,A.A., Shelenkov,A.A. and Dunbrack,R.L.,Jr (2003) A graph-theory algorithm for rapid protein side-chain prediction. Protein Sci., 12, 2001-2014.
-
(2003)
Protein Sci.
, vol.12
, pp. 2001-2014
-
-
Canutescu, A.A.1
Shelenkov, A.A.2
Dunbrack Jr., R.L.3
-
17
-
-
0036139410
-
EVA: Continuous automatic evaluation of protein structure prediction servers
-
Eyrich,V.A., Marti-Renom,M.A., Przybylski,D., Madhusudhan,M.S., Fiser,A., Pazos,F., Valencia,A., Sali,A. and Rost,B. (2001) EVA: continuous automatic evaluation of protein structure prediction servers. Bioinformatics, 17, 1242-1243.
-
(2001)
Bioinformatics
, vol.17
, pp. 1242-1243
-
-
Eyrich, V.A.1
Marti-Renom, M.A.2
Przybylski, D.3
Madhusudhan, M.S.4
Fiser, A.5
Pazos, F.6
Valencia, A.7
Sali, A.8
Rost, B.9
-
18
-
-
0242267517
-
Critical assessment of methods of protein structure prediction (CASP )-round V
-
Moult,J., Fidelis,K., Zemla,A. and Hubbard,T. (2003) Critical assessment of methods of protein structure prediction (CASP)-round V. Proteins, 53 (Suppl. 6), 334-339.
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 334-339
-
-
Moult, J.1
Fidelis, K.2
Zemla, A.3
Hubbard, T.4
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