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Volumn 24, Issue 6, 2012, Pages 2415-2426

Preferential retention of circadian clock genes during diploidization following whole genome triplication in Brassica rapa

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; BRASSICA RAPA; EUKARYOTA;

EID: 84864467620     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.112.099499     Document Type: Article
Times cited : (93)

References (90)
  • 4
    • 79959858471 scopus 로고    scopus 로고
    • Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints
    • Bekaert, M., Edger, P.P., Pires, J.C., and Conant, G.C. (2011). Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints. Plant Cell 23: 1719-1728.
    • (2011) Plant Cell , vol.23 , pp. 1719-1728
    • Bekaert, M.1    Edger, P.P.2    Pires, J.C.3    Conant, G.C.4
  • 5
    • 34250632677 scopus 로고    scopus 로고
    • The gene balance hypothesis: From classical genetics to modern genomics
    • Birchler, J.A., and Veitia, R.A. (2007). The gene balance hypothesis: From classical genetics to modern genomics. Plant Cell 19: 395-402.
    • (2007) Plant Cell , vol.19 , pp. 395-402
    • Birchler, J.A.1    Veitia, R.A.2
  • 6
    • 3142700743 scopus 로고    scopus 로고
    • Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
    • Blanc, G., and Wolfe, K.H. (2004). Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 16: 1667-1678.
    • (2004) Plant Cell , vol.16 , pp. 1667-1678
    • Blanc, G.1    Wolfe, K.H.2
  • 7
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • Bowers, J.E., Chapman, B.A., Rong, J., and Paterson, A.H. (2003). Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422: 433-438.
    • (2003) Nature , vol.422 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 8
    • 77950946551 scopus 로고    scopus 로고
    • Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping
    • Buggs, R.J.A., Chamala, S., Wu, W.E.I., Gao, L.U., May, G.D., Schnable, P.S., Soltis, D.E., Soltis, P.S., and Barbazuk, W.B. (2010). Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Mol. Ecol. 19 (Suppl 1): 132-146.
    • (2010) Mol. Ecol , vol.19 , Issue.1 SUPPL. , pp. 132-146
    • Buggs, R.J.A.1    Chamala, S.2    Wu, W.E.I.3    Gao, L.U.4    May, G.D.5    Schnable, P.S.6    Soltis, D.E.7    Soltis, P.S.8    Barbazuk, W.B.9
  • 9
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge, C., and Karlin, S. (1997). Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268: 78-94.
    • (1997) J. Mol. Biol , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 10
    • 0030450851 scopus 로고    scopus 로고
    • Mapping loci controlling flowering time in Brassica oleracea
    • Camargo, L.E.A., and Osborn, T.C. (1996). Mapping loci controlling flowering time in Brassica oleracea. Theor. Appl. Genet. 92: 610-616.
    • (1996) Theor. Appl. Genet , vol.92 , pp. 610-616
    • Camargo, L.E.A.1    Osborn, T.C.2
  • 11
    • 84860424914 scopus 로고    scopus 로고
    • Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa
    • Cheng, F., Wu, J., Fang, L., Sun, S., Liu, B., Lin, K., Bonnema, G., and Wang, X. (2012). Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa. PLoS ONE 7: e36442.
    • (2012) PLoS ONE , vol.7
    • Cheng, F.1    Wu, J.2    Fang, L.3    Sun, S.4    Liu, B.5    Lin, K.6    Bonnema, G.7    Wang, X.8
  • 12
    • 79953703428 scopus 로고    scopus 로고
    • Comparative evolution of photosynthetic genes in response to polyploid and nonpolyploid duplication
    • Coate, J.E., Schlueter, J.A., Whaley, A.M., and Doyle, J.J. (2011). Comparative evolution of photosynthetic genes in response to polyploid and nonpolyploid duplication. Plant Physiol. 155: 2081-2095.
    • (2011) Plant Physiol , vol.155 , pp. 2081-2095
    • Coate, J.E.1    Schlueter, J.A.2    Whaley, A.M.3    Doyle, J.J.4
  • 13
    • 73249122674 scopus 로고    scopus 로고
    • Clocks in the green lineage: Comparative functional analysis of the circadian architecture of the picoeukaryote ostreococcus
    • Corellou, F., Schwartz, C., Motta, J.-P., Djouani-Tahri, B., Sanchez, F., and Bouget, F.-Y. (2009). Clocks in the green lineage: Comparative functional analysis of the circadian architecture of the picoeukaryote ostreococcus. Plant Cell 21: 3436-3449.
    • (2009) Plant Cell , vol.21 , pp. 3436-3449
    • Corellou, F.1    Schwartz, C.2    Motta, J.-P.3    Djouani-Tahri, B.4    Sanchez, F.5    Bouget, F.-Y.6
  • 14
    • 33744822985 scopus 로고    scopus 로고
    • Widespread genome duplications throughout the history of flowering plants
    • Cui, L. et al. (2006). Widespread genome duplications throughout the history of flowering plants. Genome Res. 16: 738-749.
    • (2006) Genome Res , vol.16 , pp. 738-749
    • Cui, L.1
  • 15
    • 70349682921 scopus 로고    scopus 로고
    • Gene and genome duplications: The impact of dosage-sensitivity on the fate of nuclear genes
    • Edger, P.P., and Pires, J.C. (2009). Gene and genome duplications: The impact of dosage-sensitivity on the fate of nuclear genes. Chromosome Res. 17: 699-717.
    • (2009) Chromosome Res , vol.17 , pp. 699-717
    • Edger, P.P.1    Pires, J.C.2
  • 17
    • 79955007772 scopus 로고    scopus 로고
    • Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation
    • Farinas, B., and Mas, P. (2011). Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation. Plant J. 66: 318-329.
    • (2011) Plant J , vol.66 , pp. 318-329
    • Farinas, B.1    Mas, P.2
  • 18
    • 11844289579 scopus 로고    scopus 로고
    • Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock
    • Farré, E.M., Harmer, S.L., Harmon, F.G., Yanovsky, M.J., and Kay, S.A. (2005). Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock. Curr. Biol. 15: 47-54.
    • (2005) Curr. Biol , vol.15 , pp. 47-54
    • Farré, E.M.1    Harmer, S.L.2    Harmon, F.G.3    Yanovsky, M.J.4    Kay, S.A.5
  • 19
    • 77950931393 scopus 로고    scopus 로고
    • Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation
    • Flagel, L.E., and Wendel, J.F. (2010). Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation. New Phytol. 186: 184-193.
    • (2010) New Phytol , vol.186 , pp. 184-193
    • Flagel, L.E.1    Wendel, J.F.2
  • 20
    • 67651039811 scopus 로고    scopus 로고
    • Bias in plant gene content following different sorts of duplication: Tandem, whole-genome, segmental, or by transposition
    • Freeling, M. (2009). Bias in plant gene content following different sorts of duplication: Tandem, whole-genome, segmental, or by transposition. Annu. Rev. Plant Biol. 60: 433-453.
    • (2009) Annu. Rev. Plant Biol , vol.60 , pp. 433-453
    • Freeling, M.1
  • 21
    • 33745610025 scopus 로고    scopus 로고
    • Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
    • Freeling, M., and Thomas, B.C. (2006). Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. Genome Res. 16: 805-814.
    • (2006) Genome Res , vol.16 , pp. 805-814
    • Freeling, M.1    Thomas, B.C.2
  • 23
    • 0018692402 scopus 로고
    • The spandrels of San Marco and the Panglossian paradigm: A critique of the adaptationist programme
    • Gould, S.J., and Lewontin, R.C. (1979). The spandrels of San Marco and the Panglossian paradigm: A critique of the adaptationist programme. Proc. R. Soc. Lond. B Biol. Sci. 205: 581-598.
    • (1979) Proc. R. Soc. Lond. B Biol. Sci , vol.205 , pp. 581-598
    • Gould, S.J.1    Lewontin, R.C.2
  • 25
    • 66449087281 scopus 로고    scopus 로고
    • The circadian system in higher plants
    • Harmer, S.L. (2009). The circadian system in higher plants. Annu. Rev. Plant Biol. 60: 357-377.
    • (2009) Annu. Rev. Plant Biol , vol.60 , pp. 357-377
    • Harmer, S.L.1
  • 26
    • 79151483227 scopus 로고    scopus 로고
    • LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock
    • Helfer, A., Nusinow, D.A., Chow, B.Y., Gehrke, A.R., Bulyk, M.L., and Kay, S.A. (2011). LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Curr. Biol. 21: 126-133.
    • (2011) Curr. Biol , vol.21 , pp. 126-133
    • Helfer, A.1    Nusinow, D.A.2    Chow, B.Y.3    Gehrke, A.R.4    Bulyk, M.L.5    Kay, S.A.6
  • 27
    • 84859043500 scopus 로고    scopus 로고
    • EARLY FLOWERING4 recruitment of EARLY FLOWERING3 in the nucleus sustains the Arabidopsis circadian clock
    • Herrero, E. et al. (2012). EARLY FLOWERING4 recruitment of EARLY FLOWERING3 in the nucleus sustains the Arabidopsis circadian clock. Plant Cell 24: 428-443.
    • (2012) Plant Cell , vol.24 , pp. 428-443
    • Herrero, E.1
  • 28
    • 77953380723 scopus 로고    scopus 로고
    • Does the core circadian clock in the moss Physcomitrella patens (Bryophyta) comprise a single loop?
    • Holm, K., Källman, T., Gyllenstrand, N., Hedman, H., and Lagercrantz, U. (2010). Does the core circadian clock in the moss Physcomitrella patens (Bryophyta) comprise a single loop? BMC Plant Biol. 10: 109.
    • (2010) BMC Plant Biol , vol.10 , pp. 109
    • Holm, K.1    Källman, T.2    Gyllenstrand, N.3    Hedman, H.4    Lagercrantz, U.5
  • 29
    • 48749098861 scopus 로고    scopus 로고
    • Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini zinc finger gene families
    • Hu, W., dePamphilis, C.W., and Ma, H. (2008). Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini zinc finger gene families. J. Integr. Plant Biol. 50: 1031-1045.
    • (2008) J. Integr. Plant Biol , vol.50 , pp. 1031-1045
    • Hu, W.1    Depamphilis, C.W.2    Ma, H.3
  • 30
    • 0036923850 scopus 로고    scopus 로고
    • Phylogenetic analysis of Brassiceae based on the nucleotide sequences of the S-locus related gene, SLR1
    • Inaba, R., and Nishio, T. (2002). Phylogenetic analysis of Brassiceae based on the nucleotide sequences of the S-locus related gene, SLR1. Theor. Appl. Genet. 105: 1159-1165.
    • (2002) Theor. Appl. Genet , vol.105 , pp. 1159-1165
    • Inaba, R.1    Nishio, T.2
  • 31
    • 79955630390 scopus 로고    scopus 로고
    • Ancestral polyploidy in seed plants and angiosperms
    • Jiao, Y. et al. (2011). Ancestral polyploidy in seed plants and angiosperms. Nature 473: 97-1165.
    • (2011) Nature , vol.473 , pp. 97-1165
    • Jiao, Y.1
  • 32
    • 84861481002 scopus 로고    scopus 로고
    • Comparative mapping, genomic structure, and expression analysis of eight pseudo-response regulator genes in Brassica rapa
    • Kim, J.A., Kim, J.S., Hong, J.K., Lee, Y.-H., Choi, B.-S., Seol, Y.-J., and Jeon, C.H. (2012). Comparative mapping, genomic structure, and expression analysis of eight pseudo-response regulator genes in Brassica rapa. Mol. Genet. Genomics 287: 373-388.
    • (2012) Mol. Genet. Genomics , vol.287 , pp. 373-388
    • Kim, J.A.1    Kim, J.S.2    Hong, J.K.3    Lee, Y.-H.4    Choi, B.-S.5    Seol, Y.-J.6    Jeon, C.H.7
  • 33
    • 34248172920 scopus 로고    scopus 로고
    • Isolation of circadian-associated genes in Brassica rapa by comparative genomics with Arabidopsis thaliana
    • Kim, J.A. et al. (2007). Isolation of circadian-associated genes in Brassica rapa by comparative genomics with Arabidopsis thaliana. Mol. Cells 23: 145-153.
    • (2007) Mol. Cells , vol.23 , pp. 145-153
    • Kim, J.A.1
  • 34
    • 0142060793 scopus 로고    scopus 로고
    • The novel MYB protein EARLY-PHYTOCHROME-RESPONSIVE1 is a component of a slave circadian oscillator in Arabidopsis
    • Kuno, N., Møller, S.G., Shinomura, T., Xu, X.M., Chua, N.-H., and Furuya, M. (2003). The novel MYB protein EARLY-PHYTOCHROME-RESPONSIVE1 is a component of a slave circadian oscillator in Arabidopsis. Plant Cell 15: 2476-2488.
    • (2003) Plant Cell , vol.15 , pp. 2476-2488
    • Kuno, N.1    Møller, S.G.2    Shinomura, T.3    Xu, X.M.4    Chua, N.-H.5    Furuya, M.6
  • 35
    • 36448991500 scopus 로고    scopus 로고
    • Clustal W and Clustal X version 2.0
    • Larkin, M.A. et al. (2007). Clustal W and Clustal X version 2.0. Bio-informatics 23: 2947-2948.
    • (2007) Bio-informatics , vol.23 , pp. 2947-2948
    • Larkin, M.A.1
  • 36
  • 37
    • 66649134368 scopus 로고    scopus 로고
    • CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis
    • Lu, S.X., Knowles, S.M., Andronis, C., Ong, M.S., and Tobin, E.M. (2009). CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis. Plant Physiol. 150: 834-843.
    • (2009) Plant Physiol , vol.150 , pp. 834-843
    • Lu, S.X.1    Knowles, S.M.2    Andronis, C.3    Ong, M.S.4    Tobin, E.M.5
  • 38
    • 38949151064 scopus 로고    scopus 로고
    • How to usefully compare homologous plant genes and chromosomes as DNA sequences
    • Lyons, E., and Freeling, M. (2008). How to usefully compare homologous plant genes and chromosomes as DNA sequences. Plant J. 53: 661-673.
    • (2008) Plant J , vol.53 , pp. 661-673
    • Lyons, E.1    Freeling, M.2
  • 41
    • 33749870468 scopus 로고    scopus 로고
    • Phytochrome-mediated development in land plants: Red light sensing evolves to meet the challenges of changing light environments
    • Mathews, S. (2006). Phytochrome-mediated development in land plants: Red light sensing evolves to meet the challenges of changing light environments. Mol. Ecol. 15: 3483-3503.
    • (2006) Mol Ecol , vol.15 , pp. 3483-3503
    • Mathews, S.1
  • 43
    • 80052903129 scopus 로고    scopus 로고
    • The genetics of plant clocks
    • McClung, C.R. (2011). The genetics of plant clocks. Adv. Genet. 74: 105-139.
    • (2011) Adv Genet , vol.74 , pp. 105-139
    • McClung, C.R.1
  • 44
    • 78349308717 scopus 로고    scopus 로고
    • Network news: Prime time for systems biology of the plant circadian clock
    • McClung, C.R., and Gutiérrez, R.A. (2010). Network news: Prime time for systems biology of the plant circadian clock. Curr. Opin. Genet. Dev. 20: 588-598.
    • (2010) Curr. Opin. Genet. Dev , vol.20 , pp. 588-598
    • McClung, C.R.1    Gutiérrez, R.A.2
  • 45
    • 0028902249 scopus 로고
    • Circadian clock mutants in Arabidopsis identified by luciferase imaging
    • Millar, A.J., Carré, I.A., Strayer, C.A., Chua, N.-H., and Kay, S.A. (1995). Circadian clock mutants in Arabidopsis identified by luciferase imaging. Science 267: 1161-1163.
    • (1995) Science , vol.267 , pp. 1161-1163
    • Millar, A.J.1    Carré, I.A.2    Strayer, C.A.3    Chua, N.-H.4    Kay, S.A.5
  • 46
    • 77952919484 scopus 로고    scopus 로고
    • PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clock
    • Nakamichi, N., Kiba, T., Henriques, R., Mizuno, T., Chua, N.-H., and Sakakibara, H. (2010). PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clock. Plant Cell 22: 594-605.
    • (2010) Plant Cell , vol.22 , pp. 594-605
    • Nakamichi, N.1    Kiba, T.2    Henriques, R.3    Mizuno, T.4    Chua, N.-H.5    Sakakibara, H.6
  • 47
    • 20444398523 scopus 로고    scopus 로고
    • PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, together play essential roles close to the circadian clock of Arabidopsis thaliana
    • Nakamichi, N., Kita, M., Ito, S., Yamashino, T., and Mizuno, T. (2005). PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, together play essential roles close to the circadian clock of Arabidopsis thaliana. Plant Cell Physiol. 46: 686-698.
    • (2005) Plant Cell Physiol , vol.46 , pp. 686-698
    • Nakamichi, N.1    Kita, M.2    Ito, S.3    Yamashino, T.4    Mizuno, T.5
  • 48
    • 0034724516 scopus 로고    scopus 로고
    • FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis
    • Nelson, D.C., Lasswell, J., Rogg, L.E., Cohen, M.A., and Bartel, B. (2000). FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis. Cell 101: 331-340.
    • (2000) Cell , vol.101 , pp. 331-340
    • Nelson, D.C.1    Lasswell, J.2    Rogg, L.E.3    Cohen, M.A.4    Bartel, B.5
  • 49
    • 58249105076 scopus 로고    scopus 로고
    • Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids
    • Ni, Z., Kim, E.-D., Ha, M., Lackey, E., Liu, J., Zhang, Y., Sun, Q., and Chen, Z.J. (2009). Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids. Nature 457: 327-331.
    • (2009) Nature , vol.457 , pp. 327-331
    • Ni, Z.1    Kim, E.-D.2    Ha, M.3    Lackey, E.4    Liu, J.5    Zhang, Y.6    Sun, Q.7    Chen, Z.J.8
  • 52
    • 37849047792 scopus 로고    scopus 로고
    • PRR3 is a vascular regulator of TOC1 stability in the Arabidopsis circadian clock
    • Para, A., Farré, E.M., Imaizumi, T., Pruneda-Paz, J.L., Harmon, F.G., and Kay, S.A. (2007). PRR3 is a vascular regulator of TOC1 stability in the Arabidopsis circadian clock. Plant Cell 19: 3462-3473.
    • (2007) Plant Cell , vol.19 , pp. 3462-3473
    • Para, A.1    Farré, E.M.2    Imaizumi, T.3    Pruneda-Paz, J.L.4    Harmon, F.G.5    Kay, S.A.6
  • 53
    • 31544442199 scopus 로고    scopus 로고
    • Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana
    • Parkin, I.A.P., Gulden, S.M., Sharpe, A.G., Lukens, L., Trick, M., Osborn, T.C., and Lydiate, D.J. (2005). Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana. Genetics 171: 765-781.
    • (2005) Genetics , vol.171 , pp. 765-781
    • Parkin, I.A.P.1    Gulden, S.M.2    Sharpe, A.G.3    Lukens, L.4    Trick, M.5    Osborn, T.C.6    Lydiate, D.J.7
  • 54
    • 34249848751 scopus 로고    scopus 로고
    • CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes
    • Parra, G., Bradnam, K., and Korf, I. (2007). CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes. Bio-informatics 23: 1061-1067.
    • (2007) Bio-informatics , vol.23 , pp. 1061-1067
    • Parra, G.1    Bradnam, K.2    Korf, I.3
  • 56
  • 58
    • 33745670884 scopus 로고    scopus 로고
    • Evolution of the class III HD-Zip gene family in land plants
    • Prigge, M.J., and Clark, S.E. (2006). Evolution of the class III HD-Zip gene family in land plants. Evol. Dev. 8: 350-361.
    • (2006) Evol. Dev , vol.8 , pp. 350-361
    • Prigge, M.J.1    Clark, S.E.2
  • 59
    • 62449114708 scopus 로고    scopus 로고
    • A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock
    • Pruneda-Paz, J.L., Breton, G., Para, A., and Kay, S.A. (2009). A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock. Science 323: 1481-1485.
    • (2009) Science , vol.323 , pp. 1481-1485
    • Pruneda-Paz, J.L.1    Breton, G.2    Para, A.3    Kay, S.A.4
  • 60
    • 77953293491 scopus 로고    scopus 로고
    • An expanding universe of circadian networks in higher plants
    • Pruneda-Paz, J.L., and Kay, S.A. (2010). An expanding universe of circadian networks in higher plants. Trends Plant Sci. 15: 259-265.
    • (2010) Trends Plant Sci , vol.15 , pp. 259-265
    • Pruneda-Paz, J.L.1    Kay, S.A.2
  • 63
    • 33846818872 scopus 로고    scopus 로고
    • Detection and resolution of genetic loci affecting circadian period in Brassica oleracea
    • Salathia, N., Lynn, J.R., Millar, A.J., and King, G.J. (2007). Detection and resolution of genetic loci affecting circadian period in Brassica oleracea. Theor. Appl. Genet. 114:683-692.
    • (2007) Theor. Appl. Genet , vol.114 , pp. 683-692
    • Salathia, N.1    Lynn, J.R.2    Millar, A.J.3    King, G.J.4
  • 64
    • 20444382245 scopus 로고    scopus 로고
    • PSEUDO-RESPONSE REGULATOR 7 and 9 are partially redundant genes essential for the temperature responsiveness of the Arabidopsis circadian clock
    • Salomé, P.A., and McClung, C.R. (2005). PSEUDO-RESPONSE REGULATOR 7 and 9 are partially redundant genes essential for the temperature responsiveness of the Arabidopsis circadian clock. Plant Cell 17: 791-803.
    • (2005) Plant Cell , vol.17 , pp. 791-803
    • Salomé, P.A.1    McClung, C.R.2
  • 65
    • 78650894699 scopus 로고    scopus 로고
    • The role of the Arabidopsis morning loop components CCA1, LHY, PRR7, and PRR9 in temperature compensation
    • Salomé, P.A., Weigel, D., and McClung, C.R. (2010). The role of the Arabidopsis morning loop components CCA1, LHY, PRR7, and PRR9 in temperature compensation. Plant Cell 22: 3650-3661.
    • (2010) Plant Cell , vol.22 , pp. 3650-3661
    • Salomé, P.A.1    Weigel, D.2    McClung, C.R.3
  • 66
    • 77952302158 scopus 로고    scopus 로고
    • The collapse of gene complement following whole genome duplication
    • Sankoff, D., Zheng, C., and Zhu, Q. (2010). The collapse of gene complement following whole genome duplication. BMC Genomics 11: 313.
    • (2010) BMC Genomics , vol.11 , pp. 313
    • Sankoff, D.1    Zheng, C.2    Zhu, Q.3
  • 67
    • 79955860081 scopus 로고    scopus 로고
    • Heterologous expression and functional characterization of a Physcomitrella Pseudo response regulator homolog, PpPRR2
    • Satbhai, S.B., Yamashino, T., Mizuno, T., and Aoki, S. (2011). Heterologous expression and functional characterization of a Physcomitrella Pseudo response regulator homolog, PpPRR2, in Arabidopsis. Biosci. Biotechnol. Biochem. 75: 786-789.
    • (2011) Arabidopsis. Biosci. Biotechnol. Biochem , vol.75 , pp. 786-789
    • Satbhai, S.B.1    Yamashino, T.2    Mizuno, T.3    Aoki, S.4
  • 68
    • 79952744855 scopus 로고    scopus 로고
    • Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
    • Schnable, J.C., Springer, N.M., and Freeling, M. (2011). Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc. Natl. Acad. Sci. USA 108: 4069-4074.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 4069-4074
    • Schnable, J.C.1    Springer, N.M.2    Freeling, M.3
  • 69
    • 33745393624 scopus 로고    scopus 로고
    • Highly specific gene silencing by artificial microRNAs in Arabidopsis
    • Schwab, R., Ossowski, S., Riester, M., Warthmann, N., and Weigel, D. (2006). Highly specific gene silencing by artificial microRNAs in Arabidopsis. Plant Cell 18: 1121-1133.
    • (2006) Plant Cell , vol.18 , pp. 1121-1133
    • Schwab, R.1    Ossowski, S.2    Riester, M.3    Warthmann, N.4    Weigel, D.5
  • 71
    • 63549114117 scopus 로고    scopus 로고
    • Thinking outside the F-box: Novel ligands for novel receptors
    • Somers, D.E., and Fujiwara, S. (2009). Thinking outside the F-box: Novel ligands for novel receptors. Trends Plant Sci. 14: 206-213.
    • (2009) Trends Plant Sci , vol.14 , pp. 206-213
    • Somers, D.E.1    Fujiwara, S.2
  • 72
    • 1542437580 scopus 로고    scopus 로고
    • The F-box protein ZEITLUPE confers dosage-dependent control on the circadian clock, photomorphogenesis, and flowering time
    • Somers, D.E., Kim, W.Y., and Geng, R. (2004). The F-box protein ZEITLUPE confers dosage-dependent control on the circadian clock, photomorphogenesis, and flowering time. Plant Cell 16: 769-782.
    • (2004) Plant Cell , vol.16 , pp. 769-782
    • Somers, D.E.1    Kim, W.Y.2    Geng, R.3
  • 73
    • 0034724518 scopus 로고    scopus 로고
    • ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis
    • Somers, D.E., Schultz, T.F., Milnamow, M., and Kay, S.A. (2000). ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis. Cell 101: 319-329.
    • (2000) Cell , vol.101 , pp. 319-329
    • Somers, D.E.1    Schultz, T.F.2    Milnamow, M.3    Kay, S.A.4
  • 74
    • 18644368714 scopus 로고    scopus 로고
    • The Bioperl toolkit: Perl modules for the life sciences
    • Stajich, J.E. et al. (2002). The Bioperl toolkit: Perl modules for the life sciences. Genome Res. 12: 1611-1618.
    • (2002) Genome Res , vol.12 , pp. 1611-1618
    • Stajich, J.E.1
  • 77
    • 77951589569 scopus 로고    scopus 로고
    • Phylogenetic footprint of the plant clock system in angiosperms: Evolutionary processes of pseudo-response regulators
    • Takata, N., Saito, S., Saito, C.T., and Uemura, M. (2010). Phylogenetic footprint of the plant clock system in angiosperms: Evolutionary processes of pseudo-response regulators. BMC Evol. Biol. 10: 126.
    • (2010) BMC Evol. Biol , vol.10 , pp. 126
    • Takata, N.1    Saito, S.2    Saito, C.T.3    Uemura, M.4
  • 78
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739.
    • (2011) Mol. Biol. Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 79
    • 84859564587 scopus 로고    scopus 로고
    • Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy
    • Tang, H., Woodhouse, M.R., Cheng, F., Schnable, J.C., Pedersen, B.S., Conant, G., Wang, X., Freeling, M., and Pires, J.C. (2012). Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Genetics 190: 1563-1574.
    • (2012) Genetics , vol.190 , pp. 1563-1574
    • Tang, H.1    Woodhouse, M.R.2    Cheng, F.3    Schnable, J.C.4    Pedersen, B.S.5    Conant, G.6    Wang, X.7    Freeling, M.8    Pires, J.C.9
  • 80
    • 33745617700 scopus 로고    scopus 로고
    • Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
    • Thomas, B.C., Pedersen, B., and Freeling, M. (2006). Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes. Genome Res. 16: 934-946.
    • (2006) Genome Res , vol.16 , pp. 934-946
    • Thomas, B.C.1    Pedersen, B.2    Freeling, M.3
  • 81
    • 33745467604 scopus 로고    scopus 로고
    • Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy
    • Town, C.D. et al. (2006). Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy. Plant Cell 18: 1348-1359.
    • (2006) Plant Cell , vol.18 , pp. 1348-1359
    • Town, C.D.1
  • 83
    • 70450173299 scopus 로고    scopus 로고
    • Weather and seasons together demand complex biological clocks
    • Troein, C., Locke, J.C.W., Turner, M.S., and Millar, A.J. (2009). Weather and seasons together demand complex biological clocks. Curr. Biol. 19: 1961-1964.
    • (2009) Curr. Biol , vol.19 , pp. 1961-1964
    • Troein, C.1    Locke, J.C.W.2    Turner, M.S.3    Millar, A.J.4
  • 84
    • 79957491160 scopus 로고    scopus 로고
    • Proteasome function is required for biological timing throughout the twenty-four hour cycle
    • van Ooijen, G., Dixon, L.E., Troein, C., and Millar, A.J. (2011). Proteasome function is required for biological timing throughout the twenty-four hour cycle. Curr. Biol. 21: 869-875.
    • (2011) Curr. Biol , vol.21 , pp. 869-875
    • van Ooijen, G.1    Dixon, L.E.2    Troein, C.3    Millar, A.J.4
  • 86
    • 80053386792 scopus 로고    scopus 로고
    • Brassica rapa Genome Sequencing Project Consortium. (2011). The genome of the mesopolyploid crop species Brassica rapa
    • Wang, X. et al, Brassica rapa Genome Sequencing Project Consortium. (2011). The genome of the mesopolyploid crop species Brassica rapa. Nat. Genet. 43: 1035-1039.
    • Nat. Genet , vol.43 , pp. 1035-1039
    • Wang, X.1
  • 87
    • 77954741256 scopus 로고    scopus 로고
    • Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs
    • Woodhouse, M.R., Schnable, J.C., Pedersen, B.S., Lyons, E., Lisch, D., Subramaniam, S., and Freeling, M. (2010). Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs. PLoS Biol. 8: e1000409.
    • (2010) PLoS Biol , vol.8
    • Woodhouse, M.R.1    Schnable, J.C.2    Pedersen, B.S.3    Lyons, E.4    Lisch, D.5    Subramaniam, S.6    Freeling, M.7
  • 88
    • 77953187301 scopus 로고    scopus 로고
    • Robust circadian rhythms of gene expression in Brassica rapa tissue culture
    • Xu, X., Xie, Q., and McClung, C.R. (2010). Robust circadian rhythms of gene expression in Brassica rapa tissue culture. Plant Physiol. 153: 841-850.
    • (2010) Plant Physiol , vol.153 , pp. 841-850
    • Xu, X.1    Xie, Q.2    McClung, C.R.3
  • 89
    • 0032954807 scopus 로고    scopus 로고
    • Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages
    • Yang, Y.-W., Lai, K.-N., Tai, P.-Y., and Li, W.-H. (1999). Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages. J. Mol. Evol. 48: 597-604.
    • (1999) J. Mol. Evol , vol.48 , pp. 597-604
    • Yang, Y.-W.1    Lai, K.-N.2    Tai, P.-Y.3    Li, W.-H.4
  • 90
    • 34547105040 scopus 로고    scopus 로고
    • Constitutive expression of CIR1 (RVE2) affects several circadian-regulated processes and seed germination in Arabidopsis
    • Zhang, X., Chen, Y., Wang, Z.-Y., Chen, Z., Gu, H., and Qu, L.-J. (2007). Constitutive expression of CIR1 (RVE2) affects several circadian-regulated processes and seed germination in Arabidopsis. Plant J. 51: 512-525.
    • (2007) Plant J , vol.51 , pp. 512-525
    • Zhang, X.1    Chen, Y.2    Wang, Z.-Y.3    Chen, Z.4    Gu, H.5    Qu, L.-J.6


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