메뉴 건너뛰기




Volumn 2014, Issue 3, 2014, Pages

A KRAS-directed transcriptional silencing pathway that mediates the CpG island methylator phenotype

Author keywords

[No Author keywords available]

Indexed keywords

DEUBIQUITINASE; PHOSPHOTRANSFERASE; ZINC BINDING PROTEIN; CYCLIN DEPENDENT KINASE INHIBITOR; TRANSCRIPTION FACTOR; UBIQUITIN THIOLESTERASE; USP28 PROTEIN, HUMAN; ZNF304 PROTEIN, HUMAN;

EID: 84898740640     PISSN: None     EISSN: 2050084X     Source Type: Journal    
DOI: 10.7554/eLife.02313     Document Type: Article
Times cited : (139)

References (58)
  • 1
    • 66149138053 scopus 로고    scopus 로고
    • The H3K27me3 demethylase JMJD3 contributes to the activation of the INK4A-ARF locus in response to oncogene-and stress-induced senescence
    • doi: 10.1101/gad.510809
    • Agger K, Cloos PA, Rudkjaer L, Williams K, Andersen G, Christensen J, Helin K. 2009. The H3K27me3 demethylase JMJD3 contributes to the activation of the INK4A-ARF locus in response to oncogene-and stress-induced senescence. Genes & Development 23:1171-1176. doi: 10.1101/gad.510809.
    • (2009) Genes & Development , vol.23 , pp. 1171-1176
    • Agger, K.1    Cloos, P.A.2    Rudkjaer, L.3    Williams, K.4    Andersen, G.5    Christensen, J.6    Helin, K.7
  • 2
    • 31344466008 scopus 로고    scopus 로고
    • DNA methylation and gene silencing in cancer
    • doi: 10.1038/ncponc0354
    • Baylin SB. 2005. DNA methylation and gene silencing in cancer. Nature Clinical Practice Oncology 2(Suppl 1):S4-S11. doi: 10.1038/ncponc0354.
    • (2005) Nature Clinical Practice Oncology , vol.2 , Issue.SUPPL. 1
    • Baylin, S.B.1
  • 3
    • 80053144962 scopus 로고    scopus 로고
    • A decade of exploring the cancer epigenome-biological and translational implications
    • doi: 10.1038/nrc3130
    • Baylin SB, Jones PA. 2011. A decade of exploring the cancer epigenome-biological and translational implications. Nature Review Cancer 11:726-734. doi: 10.1038/nrc3130.
    • (2011) Nature Review Cancer , vol.11 , pp. 726-734
    • Baylin, S.B.1    Jones, P.A.2
  • 9
    • 31444437920 scopus 로고    scopus 로고
    • Epigenetics provides a new generation of oncogenes and tumour-suppressor genes
    • doi: 10.1038/sj.bjc.6602918
    • Esteller M. 2006. Epigenetics provides a new generation of oncogenes and tumour-suppressor genes. British Journal of Cancer 94:179-183. doi: 10.1038/sj.bjc.6602918.
    • (2006) British Journal of Cancer , vol.94 , pp. 179-183
    • Esteller, M.1
  • 10
    • 40849139208 scopus 로고    scopus 로고
    • Epigenetics in cancer
    • doi: 10.1056/NEJMra072067
    • Esteller M. 2008. Epigenetics in cancer. The New England Journal of Medicine 358:1148-1159. doi: 10.1056/NEJMra072067.
    • (2008) The New England Journal of Medicine , vol.358 , pp. 1148-1159
    • Esteller, M.1
  • 11
    • 80955137946 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation and high-throughput sequencing from paraffin-embedded pathology tissue
    • doi: 10.1038/nprot.2011.406
    • Fanelli M, Amatori S, Barozzi I, Minucci S. 2011. Chromatin immunoprecipitation and high-throughput sequencing from paraffin-embedded pathology tissue. Nature Protocols 6:1905-1919. doi: 10.1038/nprot.2011.406.
    • (2011) Nature Protocols , vol.6 , pp. 1905-1919
    • Fanelli, M.1    Amatori, S.2    Barozzi, I.3    Minucci, S.4
  • 12
    • 35548953686 scopus 로고    scopus 로고
    • An elaborate pathway required for Ras-mediated epigenetic silencing
    • doi: 10.1038/nature06251
    • Gazin C, Wajapeyee N, Gobeil S, Virbasius CM, Green MR. 2007. An elaborate pathway required for Ras-mediated epigenetic silencing. Nature 449:1073-1077. doi: 10.1038/nature06251.
    • (2007) Nature , vol.449 , pp. 1073-1077
    • Gazin, C.1    Wajapeyee, N.2    Gobeil, S.3    Virbasius, C.M.4    Green, M.R.5
  • 13
    • 33747587608 scopus 로고    scopus 로고
    • Regulation of the INK4b-ARF-INK4a tumour suppressor locus: All for one or one for all
    • doi: 10.1038/nrm1987
    • Gil J, Peters G. 2006. Regulation of the INK4b-ARF-INK4a tumour suppressor locus: all for one or one for all. Nature Review Molecular Cell Biology 7:667-677. doi: 10.1038/nrm1987.
    • (2006) Nature Review Molecular Cell Biology , vol.7 , pp. 667-677
    • Gil, J.1    Peters, G.2
  • 14
    • 84888584337 scopus 로고    scopus 로고
    • DNA methylation biomarkers as diagnostic and prognostic tools in colorectal cancer
    • doi: 10.1007/s00109-013-1088-z
    • Gyparaki MT, Basdra EK, Papavassiliou AG. 2013. DNA methylation biomarkers as diagnostic and prognostic tools in colorectal cancer. Journal of Molecular Medicine (Berlin, Germany) 91:1249-1256. doi: 10.1007/s00109-013-1088-z.
    • (2013) Journal of Molecular Medicine (Berlin, Germany) , vol.91 , pp. 1249-1256
    • Gyparaki, M.T.1    Basdra, E.K.2    Papavassiliou, A.G.3
  • 17
    • 84867400172 scopus 로고    scopus 로고
    • Epigenomics of cancer-emerging new concepts
    • doi: 10.1016/j.biochi.2012.05.007
    • Hassler MR, Egger G. 2012. Epigenomics of cancer-emerging new concepts. Biochimie 94:2219-2230. doi: 10.1016/j.biochi.2012.05.007.
    • (2012) Biochimie , vol.94 , pp. 2219-2230
    • Hassler, M.R.1    Egger, G.2
  • 20
    • 79960677839 scopus 로고    scopus 로고
    • KAP1 protein: An enigmatic master regulator of the genome
    • doi: 10.1074/jbc.R111.252569
    • Iyengar S, Farnham PJ. 2011. KAP1 protein: an enigmatic master regulator of the genome. The Journal of Biological Chemistry 286:26267-26276. doi: 10.1074/jbc.R111.252569.
    • (2011) The Journal of Biological Chemistry , vol.286 , pp. 26267-26276
    • Iyengar, S.1    Farnham, P.J.2
  • 21
    • 0033552813 scopus 로고    scopus 로고
    • The oncogene and Polycomb-group gene bmi-1 regulates cell proliferation and senescence through the ink4a locus
    • doi: 10.1038/16476
    • Jacobs JJ, Kieboom K, Marino S, DePinho RA, van Lohuizen M. 1999. The oncogene and Polycomb-group gene bmi-1 regulates cell proliferation and senescence through the ink4a locus. Nature 397:164-168. doi: 10.1038/16476.
    • (1999) Nature , vol.397 , pp. 164-168
    • Jacobs, J.J.1    Kieboom, K.2    Marino, S.3    DePinho, R.A.4    van Lohuizen, M.5
  • 23
    • 78650215860 scopus 로고    scopus 로고
    • Two groups of DNA methylation markers to classify colorectal cancer into three epigenotypes
    • doi: 10.1111/j.1349-7006.2010.01712.x
    • Kaneda A, Yagi K. 2011. Two groups of DNA methylation markers to classify colorectal cancer into three epigenotypes. Cancer Science 102:18-24. doi: 10.1111/j.1349-7006.2010.01712.x.
    • (2011) Cancer Science , vol.102 , pp. 18-24
    • Kaneda, A.1    Yagi, K.2
  • 25
    • 77957937450 scopus 로고    scopus 로고
    • Epigenetic modifications as therapeutic targets
    • doi: 10.1038/nbt.1678
    • Kelly TK, De Carvalho DD, Jones PA. 2010. Epigenetic modifications as therapeutic targets. Nature Biotechnology 28:1069-1078. doi: 10.1038/nbt.1678.
    • (2010) Nature Biotechnology , vol.28 , pp. 1069-1078
    • Kelly, T.K.1    De Carvalho, D.D.2    Jones, P.A.3
  • 26
    • 79955941973 scopus 로고    scopus 로고
    • PTMs in conversation: Activity and function of deubiquitinating enzymes regulated via post-translational modifications
    • doi: 10.1007/s12013-011-9176-6
    • Kessler BM, Edelmann MJ. 2011. PTMs in conversation: activity and function of deubiquitinating enzymes regulated via post-translational modifications. Cell Biochemistry and Biophysics 60:21-38. doi: 10.1007/s12013-011-9176-6.
    • (2011) Cell Biochemistry and Biophysics , vol.60 , pp. 21-38
    • Kessler, B.M.1    Edelmann, M.J.2
  • 28
    • 82255191954 scopus 로고    scopus 로고
    • Embryonic stem cell-specific signatures in cancer: Insights into genomic regulatory networks and implications for medicine
    • doi: 10.1186/gm291
    • Kim J, Orkin SH. 2011. Embryonic stem cell-specific signatures in cancer: insights into genomic regulatory networks and implications for medicine. Genome Medicine 3:75. doi: 10.1186/gm291.
    • (2011) Genome Medicine , vol.3 , pp. 75
    • Kim, J.1    Orkin, S.H.2
  • 29
    • 33750030758 scopus 로고    scopus 로고
    • The regulation of INK4/ARF in cancer and aging
    • doi: 10.1016/j.cell.2006.10.003
    • Kim WY, Sharpless NE. 2006. The regulation of INK4/ARF in cancer and aging. Cell 127:265-275. doi: 10.1016/j.cell.2006.10.003.
    • (2006) Cell , vol.127 , pp. 265-275
    • Kim, W.Y.1    Sharpless, N.E.2
  • 30
    • 33846148370 scopus 로고    scopus 로고
    • pRB family proteins are required for H3K27 trimethylation and Polycomb repression complexes binding to and silencing p16INK4alpha tumor suppressor gene
    • doi: 10.1101/gad.1499407
    • Kotake Y, Cao R, Viatour P, Sage J, Zhang Y, Xiong Y. 2007. pRB family proteins are required for H3K27 trimethylation and Polycomb repression complexes binding to and silencing p16INK4alpha tumor suppressor gene. Genes & Development 21:49-54. doi: 10.1101/gad.1499407.
    • (2007) Genes & Development , vol.21 , pp. 49-54
    • Kotake, Y.1    Cao, R.2    Viatour, P.3    Sage, J.4    Zhang, Y.5    Xiong, Y.6
  • 33
    • 0033531262 scopus 로고    scopus 로고
    • Downregulation of the colon tumour-suppressor homeobox gene Cdx-2 by oncogenic ras
    • doi: 10.1038/sj.onc.1202280
    • Lorentz O, Cadoret A, Duluc I, Capeau J, Gespach C, Cherqui G, Freund JN. 1999. Downregulation of the colon tumour-suppressor homeobox gene Cdx-2 by oncogenic ras. Oncogene 18:87-92. doi: 10.1038/sj.onc.1202280.
    • (1999) Oncogene , vol.18 , pp. 87-92
    • Lorentz, O.1    Cadoret, A.2    Duluc, I.3    Capeau, J.4    Gespach, C.5    Cherqui, G.6    Freund, J.N.7
  • 34
    • 84878785823 scopus 로고    scopus 로고
    • KRAB-zinc finger proteins: A repressor family displaying multiple biological functions
    • doi: 10.2174/13892029113149990002
    • Lupo A, Cesaro E, Montano G, Zurlo D, Izzo P, Costanzo P. 2013. KRAB-zinc finger proteins: a repressor family displaying multiple biological functions. Current Genomics 14:268-278. doi: 10.2174/13892029113149990002.
    • (2013) Current Genomics , vol.14 , pp. 268-278
    • Lupo, A.1    Cesaro, E.2    Montano, G.3    Zurlo, D.4    Izzo, P.5    Costanzo, P.6
  • 35
    • 36148950997 scopus 로고    scopus 로고
    • FDA approval summary: Vorinostat for treatment of advanced primary cutaneous T-cell lymphoma
    • doi: 10.1634/theoncologist.12-10-1247
    • Mann BS, Johnson JR, Cohen MH, Justice R, Pazdur R. 2007. FDA approval summary: vorinostat for treatment of advanced primary cutaneous T-cell lymphoma. Oncologist 12:1247-1252. doi: 10.1634/theoncologist.12-10-1247.
    • (2007) Oncologist , vol.12 , pp. 1247-1252
    • Mann, B.S.1    Johnson, J.R.2    Cohen, M.H.3    Justice, R.4    Pazdur, R.5
  • 37
    • 0031039113 scopus 로고    scopus 로고
    • Transformation by ras modifies AP1 composition and activity
    • doi: 10.1038/sj.onc.1200900
    • Mechta F, Lallemand D, Pfarr CM, Yaniv M. 1997. Transformation by ras modifies AP1 composition and activity. Oncogene 14:837-847. doi: 10.1038/sj.onc.1200900.
    • (1997) Oncogene , vol.14 , pp. 837-847
    • Mechta, F.1    Lallemand, D.2    Pfarr, C.M.3    Yaniv, M.4
  • 38
    • 22344449361 scopus 로고    scopus 로고
    • Bmi-1 promotes neural stem cell self-renewal and neural development but not mouse growth and survival by repressing the p16Ink4a and p19Arf senescence pathways
    • doi: 10.1101/gad.1299505
    • Molofsky AV, He S, Bydon M, Morrison SJ, Pardal R. 2005. Bmi-1 promotes neural stem cell self-renewal and neural development but not mouse growth and survival by repressing the p16Ink4a and p19Arf senescence pathways. Genes & Development 19:1432-1437. doi: 10.1101/gad.1299505.
    • (2005) Genes & Development , vol.19 , pp. 1432-1437
    • Molofsky, A.V.1    He, S.2    Bydon, M.3    Morrison, S.J.4    Pardal, R.5
  • 40
    • 72449170472 scopus 로고    scopus 로고
    • Loss-of-function genetic screens as a tool to improve the diagnosis and treatment of cancer
    • doi: 10.1038/onc.2009.295
    • Mullenders J, Bernards R. 2009. Loss-of-function genetic screens as a tool to improve the diagnosis and treatment of cancer. Oncogene 28:4409-4420. doi: 10.1038/onc.2009.295.
    • (2009) Oncogene , vol.28 , pp. 4409-4420
    • Mullenders, J.1    Bernards, R.2
  • 41
    • 77957859982 scopus 로고    scopus 로고
    • A novel zinc finger protein Zfp277 mediates transcriptional repression of the Ink4a/arf locus through polycomb repressive complex 1
    • doi: 10.1371/journal.pone.0012373
    • Negishi M, Saraya A, Mochizuki S, Helin K, Koseki H, Iwama A. 2010. A novel zinc finger protein Zfp277 mediates transcriptional repression of the Ink4a/arf locus through polycomb repressive complex 1. PLOS ONE 5:e12373. doi: 10.1371/journal.pone.0012373.
    • (2010) PLOS ONE , vol.5
    • Negishi, M.1    Saraya, A.2    Mochizuki, S.3    Helin, K.4    Koseki, H.5    Iwama, A.6
  • 42
    • 0031012892 scopus 로고    scopus 로고
    • Determination of the specific substrate sequence motifs of protein kinase C isozymes
    • doi: 10.1074/jbc.272.2.952
    • Nishikawa K, Toker A, Johannes FJ, Songyang Z, Cantley LC. 1997. Determination of the specific substrate sequence motifs of protein kinase C isozymes. The Journal of Biological Chemistry 272:952-960. doi: 10.1074/jbc.272.2.952.
    • (1997) The Journal of Biological Chemistry , vol.272 , pp. 952-960
    • Nishikawa, K.1    Toker, A.2    Johannes, F.J.3    Songyang, Z.4    Cantley, L.C.5
  • 43
    • 70350010350 scopus 로고    scopus 로고
    • Epigenetic silencing of the RASSF1A tumor suppressor gene through HOXB3-mediated induction of DNMT3B expression
    • doi: 10.1016/j.molcel.2009.10.009
    • Palakurthy RK, Wajapeyee N, Santra MK, Gazin C, Lin L, Gobeil S, Green MR. 2009. Epigenetic silencing of the RASSF1A tumor suppressor gene through HOXB3-mediated induction of DNMT3B expression. Molecular Cell 36:219-230. doi: 10.1016/j.molcel.2009.10.009.
    • (2009) Molecular Cell , vol.36 , pp. 219-230
    • Palakurthy, R.K.1    Wajapeyee, N.2    Santra, M.K.3    Gazin, C.4    Lin, L.5    Gobeil, S.6    Green, M.R.7
  • 46
    • 84872088060 scopus 로고    scopus 로고
    • De novo DNA methylation of endogenous retroviruses is shaped by KRAB-ZFPs/KAP1 and ESET
    • doi: 10.1242/dev.087585
    • Rowe HM, Friedli M, Offner S, Verp S, Mesnard D, Marquis J, Aktas T, Trono D. 2013. De novo DNA methylation of endogenous retroviruses is shaped by KRAB-ZFPs/KAP1 and ESET. Development 140:519-529. doi: 10.1242/dev.087585.
    • (2013) Development , vol.140 , pp. 519-529
    • Rowe, H.M.1    Friedli, M.2    Offner, S.3    Verp, S.4    Mesnard, D.5    Marquis, J.6    Aktas, T.7    Trono, D.8
  • 47
    • 0036293353 scopus 로고    scopus 로고
    • Identification of a KRAB-containing zinc finger protein, ZNF304, by AU-motif-directed display method and initial characterization in lymphocyte activation
    • doi: 10.1016/S0006-291X(02)00344-3
    • Sabater L, Ashhab Y, Caro P, Kolkowski EC, Pujol-Borrell R, Dominguez O. 2002. Identification of a KRAB-containing zinc finger protein, ZNF304, by AU-motif-directed display method and initial characterization in lymphocyte activation. Biochemical and Biophysical Research 293:1066-1072. doi: 10.1016/S0006-291X(02)00344-3.
    • (2002) Biochemical and Biophysical Research , vol.293 , pp. 1066-1072
    • Sabater, L.1    Ashhab, Y.2    Caro, P.3    Kolkowski, E.C.4    Pujol-Borrell, R.5    Dominguez, O.6
  • 48
    • 74049141478 scopus 로고    scopus 로고
    • Epigenetics in cancer
    • doi: 10.1093/carcin/bgp220
    • Sharma S, Kelly TK, Jones PA. 2010. Epigenetics in cancer. Carcinogenesis 31:27-36. doi: 10.1093/carcin/bgp220.
    • (2010) Carcinogenesis , vol.31 , pp. 27-36
    • Sharma, S.1    Kelly, T.K.2    Jones, P.A.3
  • 51
    • 0038043212 scopus 로고    scopus 로고
    • Tyrosine phosphorylation of protein kinase D in the pleckstrin homology domain leads to activation
    • doi: 10.1074/jbc.M213224200
    • Storz P, Doppler H, Johannes FJ, Toker A. 2003. Tyrosine phosphorylation of protein kinase D in the pleckstrin homology domain leads to activation. The Journal of Biological Chemistry 278:17969-17976. doi: 10.1074/jbc.M213224200.
    • (2003) The Journal of Biological Chemistry , vol.278 , pp. 17969-17976
    • Storz, P.1    Doppler, H.2    Johannes, F.J.3    Toker, A.4
  • 52
    • 0037413711 scopus 로고    scopus 로고
    • Protein kinase D mediates a stress-induced NF-kappaB activation and survival pathway
    • doi: 10.1093/emboj/cdg009
    • Storz P, Toker A. 2003. Protein kinase D mediates a stress-induced NF-kappaB activation and survival pathway. The EMBO Journal 22:109-120. doi: 10.1093/emboj/cdg009.
    • (2003) The EMBO Journal , vol.22 , pp. 109-120
    • Storz, P.1    Toker, A.2
  • 53
    • 80051986980 scopus 로고    scopus 로고
    • Emerging roles of protein kinase D1 in cancer
    • doi: 10.1158/1541-7786.MCR-10-0365
    • Sundram V, Chauhan SC, Jaggi M. 2011. Emerging roles of protein kinase D1 in cancer. Molecular Cancer Research 9:985-996. doi: 10.1158/1541-7786.MCR-10-0365.
    • (2011) Molecular Cancer Research , vol.9 , pp. 985-996
    • Sundram, V.1    Chauhan, S.C.2    Jaggi, M.3
  • 54
    • 0028170210 scopus 로고
    • A specific inhibitor of phosphatidylinositol 3-kinase, 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one (LY294002)
    • Vlahos CJ, Matter WF, Hui KY, Brown RF. 1994. A specific inhibitor of phosphatidylinositol 3-kinase, 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one (LY294002). The Journal of Biological Chemistry 269:5241-5248.
    • (1994) The Journal of Biological Chemistry , vol.269 , pp. 5241-5248
    • Vlahos, C.J.1    Matter, W.F.2    Hui, K.Y.3    Brown, R.F.4
  • 57
    • 77953096072 scopus 로고    scopus 로고
    • Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a
    • doi: 10.1016/j.molcel.2010.03.021
    • Yap KL, Li S, Munoz-Cabello AM, Raguz S, Zeng L, Mujtaba S, Gil J, Walsh MJ, Zhou MM. 2010. Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a. Molecular Cell 38:662-674. doi: 10.1016/j.molcel.2010.03.021.
    • (2010) Molecular Cell , vol.38 , pp. 662-674
    • Yap, K.L.1    Li, S.2    Munoz-Cabello, A.M.3    Raguz, S.4    Zeng, L.5    Mujtaba, S.6    Gil, J.7    Walsh, M.J.8    Zhou, M.M.9
  • 58
    • 0033737604 scopus 로고    scopus 로고
    • Correlations of partial and extensive methylation at the p14(ARF) locus with reduced mRNA expression in colorectal cancer cell lines and clinicopathological features in primary tumors
    • doi: 10.1093/carcin/21.11.2057
    • Zheng S, Chen P, McMillan A, Lafuente A, Lafuente MJ, Ballesta A, Trias M, Wiencke JK. 2000. Correlations of partial and extensive methylation at the p14(ARF) locus with reduced mRNA expression in colorectal cancer cell lines and clinicopathological features in primary tumors. Carcinogenesis 21:2057-2064. doi: 10.1093/carcin/21.11.2057.
    • (2000) Carcinogenesis , vol.21 , pp. 2057-2064
    • Zheng, S.1    Chen, P.2    McMillan, A.3    Lafuente, A.4    Lafuente, M.J.5    Ballesta, A.6    Trias, M.7    Wiencke, J.K.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.