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Volumn 7, Issue 1, 2014, Pages

An assessment of the relative influences of genetic background, functional diversity at major regulatory genes, and transgenic constructs on the tomato fruit metabolome

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EID: 84897371530     PISSN: None     EISSN: 19403372     Source Type: Journal    
DOI: 10.3835/plantgenome2013.06.0021     Document Type: Article
Times cited : (7)

References (53)
  • 1
    • 34249697574 scopus 로고    scopus 로고
    • Approaches for extracting practical information from gene co-expression networks in plant biology
    • doi: 10. 1093/pcp/pcm013
    • Aoki, K., Y. Ogata, and D. Shibata. 2007. Approaches for extracting practical information from gene co-expression networks in plant biology. Plant Cell Physiol. 48: 381-390. doi: 10. 1093/pcp/pcm013.
    • (2007) Plant Cell Physiol , vol.48 , pp. 381-390
    • Aoki, K.1    Ogata, Y.2    Shibata, D.3
  • 2
    • 33745077010 scopus 로고    scopus 로고
    • A metabolomic study of substantial equivalence of field-grown genetically modified wheat
    • doi: 10. 1111/j. 1467-7652. 2006. 00197. x
    • Baker, J. M., N. D. Hawkins, J. L. Ward, A. Lovegrove, J. A. Napier, P. R. Shewry, and M. H. Beale. 2006. A metabolomic study of substantial equivalence of field-grown genetically modified wheat. Plant Biotechnol. J. 4: 381-392. doi: 10. 1111/j. 1467-7652. 2006. 00197. x.
    • (2006) Plant Biotechnol. J , vol.4 , pp. 381-392
    • Baker, J.M.1    Hawkins, N.D.2    Ward, J.L.3    Lovegrove, A.4    Napier, J.A.5    Shewry, P.R.6    Beale, M.H.7
  • 3
    • 77955390164 scopus 로고    scopus 로고
    • Comparison of two GM maize varieties with a near-isogenic non-GM variety using transcriptomics, proteomics and metabolomics
    • doi: 10. 1111/j. 1467-7652. 2009. 00487. x
    • Barros, E., S. Lezar, M. J. Anttonen, J. P. van Dijk, R. M. Röhlig, E. J. Kok, and K.-H. Engel. 2010. Comparison of two GM maize varieties with a near-isogenic non-GM variety using transcriptomics, proteomics and metabolomics. Plant Biotechnol. J. 8: 436-451. doi: 10. 1111/j. 1467-7652. 2009. 00487. x.
    • (2010) Plant Biotechnol. J , vol.8 , pp. 436-451
    • Barros, E.1    Lezar, S.2    Anttonen, M.J.3    van Dijk, J.P.4    Röhlig, R.M.5    Kok, E.J.6    Engel, K.-H.7
  • 4
    • 42149146089 scopus 로고    scopus 로고
    • Microarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
    • doi: 10. 1073/pnas. 0707881105
    • Batista, R., N. Saibo, T. Lourenço, and M. M. Oliveira. 2008. Microarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion. Proc. Acad. Natl. Sci. USA 105: 3640-3645. doi: 10. 1073/pnas. 0707881105.
    • (2008) Proc. Acad. Natl. Sci. USA , vol.105 , pp. 3640-3645
    • Batista, R.1    Saibo, N.2    Lourenço, T.3    Oliveira, M.M.4
  • 5
    • 33745087120 scopus 로고    scopus 로고
    • Transgenesis has less impact on the transcriptome of wheat grain than conventional breeding
    • doi: 10. 1111/j. 1467-7652. 2006. 00193. x
    • Baudo, M. M., R. Lyons, S. Powers, G. M. Pastori, K. J. Edwards, M. J. Holdsworth, and P. R. Shewry. 2006. Transgenesis has less impact on the transcriptome of wheat grain than conventional breeding. Plant Biotechnol. J. 4: 369-380. doi: 10. 1111/j. 1467-7652. 2006. 00193. x.
    • (2006) Plant Biotechnol. J , vol.4 , pp. 369-380
    • Baudo, M.M.1    Lyons, R.2    Powers, S.3    Pastori, G.M.4    Edwards, K.J.5    Holdsworth, M.J.6    Shewry, P.R.7
  • 8
    • 33745614596 scopus 로고    scopus 로고
    • Metabolic regulation underlying tomato fruit development
    • doi: 10. 1093/jxb/erj020
    • Carrari, F., and A. R. Fernie. 2006. Metabolic regulation underlying tomato fruit development. J. Exp. Bot. 57: 1883-1897. doi: 10. 1093/jxb/erj020.
    • (2006) J. Exp. Bot , vol.57 , pp. 1883-1897
    • Carrari, F.1    Fernie, A.R.2
  • 10
    • 44349130507 scopus 로고    scopus 로고
    • Effect of transgenes on global gene expression in soybean is within the natural range of variation of conventional cultivars
    • doi: 10. 1021/jf073505i
    • Cheng, K. C., J. Beaulieu, E. Iquira, F. J. Belzile, M. G. Fortin, and M. V. Strömvik. 2008. Effect of transgenes on global gene expression in soybean is within the natural range of variation of conventional cultivars. J. Agric. Food Chem. 56: 3057-3067. doi: 10. 1021/jf073505i.
    • (2008) J. Agric. Food Chem , vol.56 , pp. 3057-3067
    • Cheng, K.C.1    Beaulieu, J.2    Iquira, E.3    Belzile, F.J.4    Fortin, M.G.5    Strömvik, M.V.6
  • 11
    • 17644380795 scopus 로고    scopus 로고
    • Committee on Identifying and Assessing Unintended Effects of Genetically Engineered Foods on Human Health NRC., National Academies Press, Washington, DC
    • Committee on Identifying and Assessing Unintended Effects of Genetically Engineered Foods on Human Health NRC. 2004. Safety of genetically engineered foods: Approaches to assessing unintended health effects. National Academies Press, Washington, DC.
    • (2004) Safety of genetically engineered foods: Approaches to assessing unintended health effects
  • 12
    • 34248512719 scopus 로고    scopus 로고
    • Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry
    • doi: 10. 1038/nprot. 2007. 95
    • De Vos, R. C. H., S. Moco, A. Lommen, J. J. B. Keurentjes, R. J. Bino, and R. D. Hall. 2007. Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry. Nat. Protoc. 2: 778-791. doi: 10. 1038/nprot. 2007. 95.
    • (2007) Nat. Protoc , vol.2 , pp. 778-791
    • De Vos, R.C.H.1    Moco, S.2    Lommen, A.3    Keurentjes, J.J.B.4    Bino, R.J.5    Hall, R.D.6
  • 13
    • 4744348316 scopus 로고    scopus 로고
    • NMR and HPLC-UV profiling of potatoes with genetic modifications to metabolic pathways
    • doi: 10. 1021/jf049522e
    • Defernez, M., Y. M. Gunning, A. J. Parr, L. V. T. Shepherd, H. V. Davies, and I. J. Colquhoun. 2004. NMR and HPLC-UV profiling of potatoes with genetic modifications to metabolic pathways. J. Agric. Food Chem. 52: 6075-6085. doi: 10. 1021/jf049522e.
    • (2004) J. Agric. Food Chem , vol.52 , pp. 6075-6085
    • Defernez, M.1    Gunning, Y.M.2    Parr, A.J.3    Shepherd, L.V.T.4    Davies, H.V.5    Colquhoun, I.J.6
  • 15
    • 80054843453 scopus 로고    scopus 로고
    • Weighted correlation network analysis (WGCNA) applied to the tomato fruit metabolome
    • doi: 10. 1371/journal. pone. 0026683
    • DiLeo, M. V., G. D. Strahan, M. den Bakker, and O. A. Hoekenga. 2011. Weighted correlation network analysis (WGCNA) applied to the tomato fruit metabolome. PLoS ONE 6: E26683. doi: 10. 1371/journal. pone. 0026683.
    • (2011) PLoS ONE , vol.6
    • DiLeo, M.V.1    Strahan, G.D.2    den Bakker, M.3    Hoekenga, O.A.4
  • 16
    • 42449122308 scopus 로고    scopus 로고
    • Current trends and future requirements for the mass spectrometric investigation of microbial, mammalian and plant metabolomes
    • doi: 10. 1088/1478-3975/5/1/011001
    • Dunn, W. B. 2008. Current trends and future requirements for the mass spectrometric investigation of microbial, mammalian and plant metabolomes. Phys. Biol. 5(1): 011001. doi: 10. 1088/1478-3975/5/1/011001.
    • (2008) Phys. Biol , vol.5 , Issue.1 , pp. 011001
    • Dunn, W.B.1
  • 18
    • 33344455283 scopus 로고    scopus 로고
    • Natural genetic variation for improving crop quality
    • Fernie A. R., Y. Tadmor, and D. Zamir. 2006. Natural genetic variation for improving crop quality. Curr. Opin. Plant Biol. 9: 196-202.
    • (2006) Curr. Opin. Plant Biol , vol.9 , pp. 196-202
    • Fernie, A.R.1    Tadmor, Y.2    Zamir, D.3
  • 19
    • 0039975961 scopus 로고
    • 'Mountain Spring' tomato; NC8276 and NC84173 tomato breeding lines
    • Gardner, R. 1992. 'Mountain Spring' tomato; NC8276 and NC84173 tomato breeding lines. HortScience 25: 989-990.
    • (1992) HortScience , vol.25 , pp. 989-990
    • Gardner, R.1
  • 21
    • 0033823881 scopus 로고    scopus 로고
    • 'Sun Leaper', a hybrid tomato and its parent, NC HS-1
    • Gardner, R. 2000. 'Sun Leaper', a hybrid tomato and its parent, NC HS-1. HortScience 35: 960-961.
    • (2000) HortScience , vol.35 , pp. 960-961
    • Gardner, R.1
  • 22
    • 32344448836 scopus 로고    scopus 로고
    • Mountain Crest hybrid tomato and its parent, NC 1rinEC
    • Gardner, R. 2006. Mountain Crest hybrid tomato and its parent, NC 1rinEC. HortScience 41: 261-262.
    • (2006) HortScience , vol.41 , pp. 261-262
    • Gardner, R.1
  • 23
    • 2942690153 scopus 로고    scopus 로고
    • Genetic regulation of fruit development and ripening
    • doi: 10. 1105/tpc. 019158
    • Giovannoni, J. J. 2004. Genetic regulation of fruit development and ripening. Plant Cell 16: S170-S180. doi: 10. 1105/tpc. 019158.
    • (2004) Plant Cell , vol.16
    • Giovannoni, J.J.1
  • 24
    • 33749577815 scopus 로고    scopus 로고
    • Molecular and phylogenetic analyses of the MADS-box gene family in tomato
    • doi: 10. 1093/molbev/msl095
    • Hileman, L. C., J. F. Sundstrom, A. Litt, M. Chen, T. Shumba, and V. F. Irish. 2006. Molecular and phylogenetic analyses of the MADS-box gene family in tomato. Mol. Biol. Evol. 23: 2245-2258. doi: 10. 1093/molbev/msl095.
    • (2006) Mol. Biol. Evol , vol.23 , pp. 2245-2258
    • Hileman, L.C.1    Sundstrom, J.F.2    Litt, A.3    Chen, M.4    Shumba, T.5    Irish, V.F.6
  • 25
    • 63449112116 scopus 로고    scopus 로고
    • Using metabolomics to estimate unintended effects in transgenic crop plants: Problems, promises, and opportunities
    • Hoekenga, O. A. 2008. Using metabolomics to estimate unintended effects in transgenic crop plants: Problems, promises, and opportunities. J. Biomol. Tech. 19: 159-166.
    • (2008) J. Biomol. Tech , vol.19 , pp. 159-166
    • Hoekenga, O.A.1
  • 30
    • 1642291581 scopus 로고    scopus 로고
    • Comparative safety assessment for biotech crops
    • doi: 10. 1016/j. tibtech. 2003. 08. 003
    • Kok, E. J., and H. A. Kuiper. 2003. Comparative safety assessment for biotech crops. Trends Biotechnol. 21: 439-444. doi: 10. 1016/j. tibtech. 2003. 08. 003.
    • (2003) Trends Biotechnol , vol.21 , pp. 439-444
    • Kok, E.J.1    Kuiper, H.A.2
  • 31
    • 1842535103 scopus 로고    scopus 로고
    • Dehydrotomatine and alpha-tomatine content in tomato fruits and vegetative plant tissues
    • doi: 10. 1021/jf0306845
    • Kozukue, N., J. S. Han, K. R. Lee, and M. Friedman. 2004. Dehydrotomatine and alpha-tomatine content in tomato fruits and vegetative plant tissues. J. Agric. Food Chem. 52: 2079-2083. doi: 10. 1021/jf0306845.
    • (2004) J. Agric. Food Chem , vol.52 , pp. 2079-2083
    • Kozukue, N.1    Han, J.S.2    Lee, K.R.3    Friedman, M.4
  • 32
    • 0034786151 scopus 로고    scopus 로고
    • Assessment of the food safety issues related to genetically modified foods
    • doi: 10. 1046/j. 1365-313X. 2001. 01119. x
    • Kuiper, H. A., G. A. Kleter, H. P. J. M. Noteborn, and E. J. Kok. 2001. Assessment of the food safety issues related to genetically modified foods. Plant J. 27: 503-528. doi: 10. 1046/j. 1365-313X. 2001. 01119. x.
    • (2001) Plant J , vol.27 , pp. 503-528
    • Kuiper, H.A.1    Kleter, G.A.2    Noteborn, H.P.J.M.3    Kok, E.J.4
  • 33
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: An R package for weighted correlation network analysis
    • Langfelder, P., and S. Horvath. 2008. WGCNA: An R package for weighted correlation network analysis. BMC Bioinf. 9: 559.
    • (2008) BMC Bioinf , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 36
    • 33747137944 scopus 로고    scopus 로고
    • A liquid chromatography-mass spectrometry-based metabolome database for tomato
    • doi: 10. 1104/pp. 106. 078428
    • Moco, S., R. J. Bino, O. Vorst, H. A. Verhoeven, J. de Groot, T. A. van Beek, J. Vervoort, and C. H. de Vos. 2006. A liquid chromatography-mass spectrometry-based metabolome database for tomato. Plant Physiol. 141: 1205-1218. doi: 10. 1104/pp. 106. 078428.
    • (2006) Plant Physiol , vol.141 , pp. 1205-1218
    • Moco, S.1    Bino, R.J.2    Vorst, O.3    Verhoeven, H.A.4    de Groot, J.5    van Beek, T.A.6    Vervoort, J.7    de Vos, C.H.8
  • 37
    • 40049099410 scopus 로고    scopus 로고
    • Tissue specialization at the metabolite level is perceived during the development of tomato fruit
    • doi: 10. 1093/jxb/erm271
    • Moco, S., E. Capanoglu, Y. Tikunov, R. J. Bino, D. Boyacioglu, R. D. Hall, J. Vervoort, and R. C. De Vos. 2007. Tissue specialization at the metabolite level is perceived during the development of tomato fruit. J. Exp. Bot. 58: 4131-4146. doi: 10. 1093/jxb/erm271.
    • (2007) J. Exp. Bot , vol.58 , pp. 4131-4146
    • Moco, S.1    Capanoglu, E.2    Tikunov, Y.3    Bino, R.J.4    Boyacioglu, D.5    Hall, R.D.6    Vervoort, J.7    De Vos, R.C.8
  • 38
    • 80052398971 scopus 로고    scopus 로고
    • Systems biology of tomato fruit development: Combined transcript, protein and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions
    • Osorio, S., R. Alba, C. M. B. Damasceno, G. Lopez-Casao, M. Lohse, M. I. Zanor, T. Tohge, B. Usadel, J. K. C. Rose, Z. Fei, J. J. Giovannoni, and A. R. Fernie. 2011. Systems biology of tomato fruit development: combined transcript, protein and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions. Plant Physiol. 157: 405-425.
    • (2011) Plant Physiol , vol.157 , pp. 405-425
    • Osorio, S.1    Alba, R.2    Damasceno, C.M.B.3    Lopez-Casao, G.4    Lohse, M.5    Zanor, M.I.6    Tohge, T.7    Usadel, B.8    Rose, J.K.C.9    Fei, Z.10    Giovannoni, J.J.11    Fernie, A.R.12
  • 39
    • 22244458870 scopus 로고    scopus 로고
    • Dihydrocaffeoyl polyamines (kukoamine and allies) in potato (Solanum tuberosum) tubers detected during metabolite profiling
    • doi: 10. 1021/jf050298i
    • Parr, A. J., F. A. Mellon, I. J. Colquhoun, and H. V. Davies. 2005. Dihydrocaffeoyl polyamines (kukoamine and allies) in potato (Solanum tuberosum) tubers detected during metabolite profiling. J. Agric. Food Chem. 53: 5461-5466. doi: 10. 1021/jf050298i.
    • (2005) J. Agric. Food Chem , vol.53 , pp. 5461-5466
    • Parr, A.J.1    Mellon, F.A.2    Colquhoun, I.J.3    Davies, H.V.4
  • 40
    • 77954772536 scopus 로고    scopus 로고
    • MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
    • doi: 10. 1186/1471-2105-11-395
    • Pluskal, T., S. Castillo, A. Villar-Briones, and M. Oresic. 2010. MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinf. 11: 395. doi: 10. 1186/1471-2105-11-395.
    • (2010) BMC Bioinf , vol.11 , pp. 395
    • Pluskal, T.1    Castillo, S.2    Villar-Briones, A.3    Oresic, M.4
  • 41
    • 70149113077 scopus 로고    scopus 로고
    • R Development Core Team., R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team. 2009. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
    • (2009) R: A language and environment for statistical computing
  • 42
    • 0036788484 scopus 로고    scopus 로고
    • A different perspective on GM food
    • doi: 10. 1038/nbt1002-969
    • Schubert, D. 2002. A different perspective on GM food. Nat. Biotechnol. 20: 969. doi: 10. 1038/nbt1002-969.
    • (2002) Nat. Biotechnol , vol.20 , pp. 969
    • Schubert, D.1
  • 43
    • 84874574537 scopus 로고    scopus 로고
    • Leveraging non-targeted metabolite profiling via statistical genomics
    • doi: 10. 1371/journal. pone. 0057667
    • Shen, M., C. D. Broeckling, E. Y. Chu, G. Ziegler, I. R. Baxter, J. E. Prenni, and O. A. Hoekenga. 2013. Leveraging non-targeted metabolite profiling via statistical genomics. PLoS ONE 8(2): e57667. doi: 10. 1371/journal. pone. 0057667.
    • (2013) PLoS ONE , vol.8 , Issue.2
    • Shen, M.1    Broeckling, C.D.2    Chu, E.Y.3    Ziegler, G.4    Baxter, I.R.5    Prenni, J.E.6    Hoekenga, O.A.7
  • 45
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: New features for data integration and network visualization
    • doi: 10. 1093/bioinformatics/btq675
    • Smoot, M. E., K. Ono, J. Ruscheinski, P. L. Wang, and T. Ideker. 2011. Cytoscape 2. 8: New features for data integration and network visualization. Bioinformatics 27: 431-432. doi: 10. 1093/bioinformatics/btq675.
    • (2011) Bioinformatics , vol.27 , pp. 431-432
    • Smoot, M.E.1    Ono, K.2    Ruscheinski, J.3    Wang, P.L.4    Ideker, T.5
  • 48
    • 33747019547 scopus 로고    scopus 로고
    • Centering, scaling, and transformations: Improving the biological information content of metabolomics data
    • doi: 10. 1186/1471-2164-7-142
    • van den Berg, R., H. Hoefsloot, J. Westerhuis, A. Smilde, and M. van der Werf. 2006. Centering, scaling, and transformations: Improving the biological information content of metabolomics data. BMC Genomics 7: 142. doi: 10. 1186/1471-2164-7-142.
    • (2006) BMC Genomics , vol.7 , pp. 142
    • van den Berg, R.1    Hoefsloot, H.2    Westerhuis, J.3    Smilde, A.4    van der Werf, M.5
  • 49
    • 0037066465 scopus 로고    scopus 로고
    • A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (Rin) locus
    • doi: 10. 1126/science. 1068181
    • Vrebalov, J., D. Ruezinsky, V. Padmanabhan, R. White, D. Medrano, R. Drake, W. Schuch, and J. Giovannoni. 2002. A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (Rin) locus. Science 296: 343-346. doi: 10. 1126/science. 1068181.
    • (2002) Science , vol.296 , pp. 343-346
    • Vrebalov, J.1    Ruezinsky, D.2    Padmanabhan, V.3    White, R.4    Medrano, D.5    Drake, R.6    Schuch, W.7    Giovannoni, J.8
  • 51
    • 58949092636 scopus 로고    scopus 로고
    • Isolation, characterization, and surfactant properties of the major triterpenoid glycosides from unripe tomato fruits
    • doi: 10. 1021/jf802351c
    • Yamanaka, T., J.-P. Vincken, P. de Waard, M. Sanders, N. Takada, and H. Gruppen. 2008. Isolation, characterization, and surfactant properties of the major triterpenoid glycosides from unripe tomato fruits. J. Agric. Food Chem. 56: 11432-11440. doi: 10. 1021/jf802351c.
    • (2008) J. Agric. Food Chem , vol.56 , pp. 11432-11440
    • Yamanaka, T.1    Vincken, J.-P.2    de Waard, P.3    Sanders, M.4    Takada, N.5    Gruppen, H.6
  • 52
    • 66149101012 scopus 로고    scopus 로고
    • C22 isomerization in alpha-tomatine-to-esculeoside A conversion during tomato ripening is driven by C27 hydroxylation of triterpenoidal skeleton
    • doi: 10. 1021/jf900017n
    • Yamanaka, T., J.-P. Vincken, H. Zuilhof, A. Legger, N. Takada, and H. Gruppen. 2009. C22 isomerization in alpha-tomatine-to-esculeoside A conversion during tomato ripening is driven by C27 hydroxylation of triterpenoidal skeleton. J. Agric. Food Chem. 57: 3786-3791. doi: 10. 1021/jf900017n.
    • (2009) J. Agric. Food Chem , vol.57 , pp. 3786-3791
    • Yamanaka, T.1    Vincken, J.-P.2    Zuilhof, H.3    Legger, A.4    Takada, N.5    Gruppen, H.6
  • 53
    • 69249215206 scopus 로고    scopus 로고
    • The potato R locus codes for dihydroflavonol 4-reductase
    • doi: 10. 1007/s00122-009-1100-8
    • Zhang, Y., S. Cheng, D. De Jong, H. Griffiths, R. Halitschke, and W. De Jong. 2009. The potato R locus codes for dihydroflavonol 4-reductase. Theor. Appl. Genet. 119: 931-937. doi: 10. 1007/s00122-009-1100-8.
    • (2009) Theor. Appl. Genet , vol.119 , pp. 931-937
    • Zhang, Y.1    Cheng, S.2    De Jong, D.3    Griffiths, H.4    Halitschke, R.5    De Jong, W.6


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