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Volumn 23, Issue 5, 2014, Pages 1124-1136

Sequential adaptive introgression of the mitochondrial genome in Drosophila yakuba and Drosophila santomea

Author keywords

gene flow; positive selection; recurrent adaptation; speciation

Indexed keywords

MITOCHONDRIAL DNA;

EID: 84896817089     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.12678     Document Type: Article
Times cited : (60)

References (130)
  • 1
    • 85047671603 scopus 로고
    • Rapid isolation of mitochondrial DNA from Drosophila adults
    • Afonso JM, Pestano J, Hernandez M, (1988) Rapid isolation of mitochondrial DNA from Drosophila adults. Biochemical Genetics, 26, 381-386.
    • (1988) Biochemical Genetics , vol.26 , pp. 381-386
    • Afonso, J.M.1    Pestano, J.2    Hernandez, M.3
  • 6
    • 33646894449 scopus 로고    scopus 로고
    • Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group
    • Bachtrog D, Thornton K, Clark A, Andolfatto P, (2006) Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group. Evolution, 60, 292-302.
    • (2006) Evolution , vol.60 , pp. 292-302
    • Bachtrog, D.1    Thornton, K.2    Clark, A.3    Andolfatto, P.4
  • 7
    • 0033936421 scopus 로고    scopus 로고
    • When one is not enough: Introgression of mitochondrial DNA in Drosophila
    • Ballard JW, (2000) When one is not enough: introgression of mitochondrial DNA in Drosophila. Molecular Biology and Evolution, 17, 1126-1130.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 1126-1130
    • Ballard, J.W.1
  • 8
    • 1642285792 scopus 로고    scopus 로고
    • The incomplete natural history of mitochondria
    • Ballard JWO, Whitlock MC, (2004) The incomplete natural history of mitochondria. Molecular Ecology, 13, 729-744.
    • (2004) Molecular Ecology , vol.13 , pp. 729-744
    • Ballard, J.W.O.1    Whitlock, M.C.2
  • 10
    • 0002389968 scopus 로고
    • Genetic analysis of hybrid zones
    • (ed Harrison R.G.), Oxford University Press, New York and Oxford
    • Barton NH, Gale KS, (1993) Genetic analysis of hybrid zones. In: Hybrid zones and the Evolutionary Process (ed, Harrison RG,), pp. 13-45. Oxford University Press, New York and Oxford.
    • (1993) Hybrid Zones and the Evolutionary Process , pp. 13-45
    • Barton, N.H.1    Gale, K.S.2
  • 12
    • 0024475736 scopus 로고
    • Adaptation, speciation and hybrid zones
    • Barton NH, Hewitt GM, (1989) Adaptation, speciation and hybrid zones. Nature, 341, 497-503.
    • (1989) Nature , vol.341 , pp. 497-503
    • Barton, N.H.1    Hewitt, G.M.2
  • 14
    • 0035043494 scopus 로고    scopus 로고
    • Divergence between Drosophila santomea and allopatric or sympatric populations of D. Yakuba using paralogous amylase genes and migration scenarios along the Cameroon volcanic line
    • Cariou ML, Silvain JF, Daubin V, Da Lage JL, Lachaise D, (2001) Divergence between Drosophila santomea and allopatric or sympatric populations of D. yakuba using paralogous amylase genes and migration scenarios along the Cameroon volcanic line. Molecular Ecology, 10, 649-660.
    • (2001) Molecular Ecology , vol.10 , pp. 649-660
    • Cariou, M.L.1    Silvain, J.F.2    Daubin, V.3    Da Lage, J.L.4    Lachaise, D.5
  • 15
    • 50849109480 scopus 로고    scopus 로고
    • Repeated adaptive introgression at a gene under multiallelic balancing selection
    • Castric V, Bechsgaard J, Schierup MH, Vekemans X, (2008) Repeated adaptive introgression at a gene under multiallelic balancing selection. PLoS Genetics, 4, e1000168.
    • (2008) PLoS Genetics , vol.4
    • Castric, V.1    Bechsgaard, J.2    Schierup, M.H.3    Vekemans, X.4
  • 16
    • 2342567074 scopus 로고    scopus 로고
    • Conspecific sperm precedence in sister species of Drosophila with overlapping ranges
    • Chang AS, (2004) Conspecific sperm precedence in sister species of Drosophila with overlapping ranges. Evolution, 58, 781-789.
    • (2004) Evolution , vol.58 , pp. 781-789
    • Chang, A.S.1
  • 17
    • 1542319065 scopus 로고    scopus 로고
    • What maintains noncytoplasmic incompatibility inducing Wolbachia in their hosts: A case study from a natural Drosophila yakuba population
    • Charlat S, Ballard JW, Mercot H, (2004) What maintains noncytoplasmic incompatibility inducing Wolbachia in their hosts: a case study from a natural Drosophila yakuba population. Journal of Evolutionary Biology, 17, 322-330.
    • (2004) Journal of Evolutionary Biology , vol.17 , pp. 322-330
    • Charlat, S.1    Ballard, J.W.2    Mercot, H.3
  • 18
    • 84855428748 scopus 로고    scopus 로고
    • The effects of deleterious mutations on evolution at linked sites
    • Charlesworth B, (2012) The effects of deleterious mutations on evolution at linked sites. Genetics, 190, 5-22.
    • (2012) Genetics , vol.190 , pp. 5-22
    • Charlesworth, B.1
  • 20
    • 0027305597 scopus 로고
    • The effect of deleterious mutations on neutral molecular variation
    • Charlesworth B, Morgan MT, Charlesworth D, (1993a) The effect of deleterious mutations on neutral molecular variation. Genetics, 134, 1289-1303.
    • (1993) Genetics , vol.134 , pp. 1289-1303
    • Charlesworth, B.1    Morgan, M.T.2    Charlesworth, D.3
  • 21
    • 0027313002 scopus 로고
    • Mutation accumulation in finite outbreeding and inbreeding populations
    • Charlesworth D, Morgan MT, Charlesworth B, (1993b) Mutation accumulation in finite outbreeding and inbreeding populations. Genetical Research, 61, 39-56.
    • (1993) Genetical Research , vol.61 , pp. 39-56
    • Charlesworth, D.1    Morgan, M.T.2    Charlesworth, B.3
  • 22
    • 0022225470 scopus 로고
    • Natural selection with nuclear and cytoplasmic transmission. II. Tests with Drosophila from diverse populations
    • Clark AG, (1985) Natural selection with nuclear and cytoplasmic transmission. II. Tests with Drosophila from diverse populations. Genetics, 111, 97-112.
    • (1985) Genetics , vol.111 , pp. 97-112
    • Clark, A.G.1
  • 23
    • 0023856592 scopus 로고
    • Natural selection with nuclear and cytoplasmic transmission. III. Joint analysis of segregation and mtDNA in Drosophila melanogaster
    • Clark AG, Lyckegaard EM, (1988) Natural selection with nuclear and cytoplasmic transmission. III. Joint analysis of segregation and mtDNA in Drosophila melanogaster. Genetics, 118, 471-481.
    • (1988) Genetics , vol.118 , pp. 471-481
    • Clark, A.G.1    Lyckegaard, E.M.2
  • 24
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • Clark AG, Eisen MB, Smith DR, et al,. (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature, 450, 203-218.
    • (2007) Nature , vol.450 , pp. 203-218
    • Clark, A.G.1    Eisen, M.B.2    Smith, D.R.3
  • 25
    • 0022423413 scopus 로고
    • The ribosomal RNA genes of Drosophila mitochondrial DNA
    • Clary DO, Wolstenholme DR, (1985) The ribosomal RNA genes of Drosophila mitochondrial DNA. Nucleic Acids Research, 13, 4029-4045.
    • (1985) Nucleic Acids Research , vol.13 , pp. 4029-4045
    • Clary, D.O.1    Wolstenholme, D.R.2
  • 26
    • 84868143643 scopus 로고    scopus 로고
    • The many landscapes of recombination in Drosophila melanogaster
    • Comeron JM, Ratnappan R, Bailin S, (2012) The many landscapes of recombination in Drosophila melanogaster. PLoS Genetics, 8, e1002905.
    • (2012) PLoS Genetics , vol.8
    • Comeron, J.M.1    Ratnappan, R.2    Bailin, S.3
  • 27
    • 3042750437 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, MA.
    • Coyne JA, Orr HA, (2004) Speciation. Sinauer Associates, Sunderland, MA.
    • (2004) Speciation
    • Coyne, J.A.1    Orr, H.A.2
  • 28
    • 0036958845 scopus 로고    scopus 로고
    • Sexual isolation between sibling species with overlapping ranges: Drosophila santomea and Drosophila yakuba
    • Coyne JA, Kim SY, Chang AS, Lachaise D, Elwyn S, (2002) Sexual isolation between sibling species with overlapping ranges: Drosophila santomea and Drosophila yakuba. Evolution, 56, 2424-2434.
    • (2002) Evolution , vol.56 , pp. 2424-2434
    • Coyne, J.A.1    Kim, S.Y.2    Chang, A.S.3    Lachaise, D.4    Elwyn, S.5
  • 29
    • 10344229416 scopus 로고    scopus 로고
    • Genetic studies of two sister species in the Drosophila melanogaster subgroup, D. Yakuba and D. Santomea
    • Coyne JA, Elwyn S, Kim SY, Llopart A, (2004) Genetic studies of two sister species in the Drosophila melanogaster subgroup, D. yakuba and D. santomea. Genetical Research, 84, 11-26.
    • (2004) Genetical Research , vol.84 , pp. 11-26
    • Coyne, J.A.1    Elwyn, S.2    Kim, S.Y.3    Llopart, A.4
  • 30
    • 0033051197 scopus 로고    scopus 로고
    • Consequences of cytonuclear epistasis and assortative mating for the genetic structure of hybrid populations
    • Cruzan MB, Arnold ML, (1999) Consequences of cytonuclear epistasis and assortative mating for the genetic structure of hybrid populations. Heredity, 82, 36-45.
    • (1999) Heredity , vol.82 , pp. 36-45
    • Cruzan, M.B.1    Arnold, M.L.2
  • 31
    • 84864453108 scopus 로고    scopus 로고
    • JModelTest 2: More models, new heuristics and parallel computing
    • Darriba D, Taboada GL, Doallo R, Posada D, (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9, 772.
    • (2012) Nature Methods , vol.9 , pp. 772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 32
    • 45849088092 scopus 로고    scopus 로고
    • The effects of recombination rate on the distribution and abundance of transposable elements
    • Dolgin ES, Charlesworth B, (2008) The effects of recombination rate on the distribution and abundance of transposable elements. Genetics, 178, 2169-2177.
    • (2008) Genetics , vol.178 , pp. 2169-2177
    • Dolgin, E.S.1    Charlesworth, B.2
  • 33
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 35
    • 81555214016 scopus 로고    scopus 로고
    • Wolbachia enhance Drosophila stem cell proliferation and target the germline stem cell niche
    • Fast EM, Toomey ME, Panaram K, et al,. (2011) Wolbachia enhance Drosophila stem cell proliferation and target the germline stem cell niche. Science, 334, 990-992.
    • (2011) Science , vol.334 , pp. 990-992
    • Fast, E.M.1    Toomey, M.E.2    Panaram, K.3
  • 36
    • 0016110957 scopus 로고
    • The evolutionary advantage of recombination
    • Felsenstein J, (1974) The evolutionary advantage of recombination. Genetics, 78, 737-756.
    • (1974) Genetics , vol.78 , pp. 737-756
    • Felsenstein, J.1
  • 37
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J, (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 38
    • 0342424207 scopus 로고    scopus 로고
    • Low variability in a Y-linked plant gene and its implications for Y-chromosome evolution
    • Filatov DA, Moneger F, Negrutiu I, Charlesworth D, (2000) Low variability in a Y-linked plant gene and its implications for Y-chromosome evolution. Nature, 404, 388-390.
    • (2000) Nature , vol.404 , pp. 388-390
    • Filatov, D.A.1    Moneger, F.2    Negrutiu, I.3    Charlesworth, D.4
  • 39
    • 0027134973 scopus 로고
    • Muller's Ratchet and mutational meltdowns
    • Gabriel W, Lynch M, Burger R, (1993) Muller's Ratchet and mutational meltdowns. Evolution, 47, 1744-1757.
    • (1993) Evolution , vol.47 , pp. 1744-1757
    • Gabriel, W.1    Lynch, M.2    Burger, R.3
  • 40
    • 84864588500 scopus 로고    scopus 로고
    • Genome sequencing reveals complex speciation in the Drosophila simulans clade
    • Garrigan D, Kingan SB, Geneva AJ, et al,. (2012) Genome sequencing reveals complex speciation in the Drosophila simulans clade. Genome Research, 22, 1499-1511.
    • (2012) Genome Research , vol.22 , pp. 1499-1511
    • Garrigan, D.1    Kingan, S.B.2    Geneva, A.J.3
  • 41
    • 26444519157 scopus 로고    scopus 로고
    • The quantitative genetics of transcription
    • Gibson G, Weir B, (2005) The quantitative genetics of transcription. Trends in Genetics, 21, 616-623.
    • (2005) Trends in Genetics , vol.21 , pp. 616-623
    • Gibson, G.1    Weir, B.2
  • 42
    • 0034090232 scopus 로고    scopus 로고
    • The degeneration of asexual haploid populations and the speed of Muller's ratchet
    • Gordo I, Charlesworth B, (2000) The degeneration of asexual haploid populations and the speed of Muller's ratchet. Genetics, 154, 1379-1387.
    • (2000) Genetics , vol.154 , pp. 1379-1387
    • Gordo, I.1    Charlesworth, B.2
  • 43
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696-704.
    • (2003) Systematic Biology , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 44
    • 33846047594 scopus 로고    scopus 로고
    • Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila
    • Haag-Liautard C, Dorris M, Maside X, et al,. (2007) Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Nature, 445, 82-85.
    • (2007) Nature , vol.445 , pp. 82-85
    • Haag-Liautard, C.1    Dorris, M.2    Maside, X.3
  • 45
    • 50249175024 scopus 로고    scopus 로고
    • Direct estimation of the mitochondrial DNA mutation rate in Drosophila melanogaster
    • Haag-Liautard C, Coffey N, Houle D, et al,. (2008) Direct estimation of the mitochondrial DNA mutation rate in Drosophila melanogaster. PLoS Biology, 6, e204.
    • (2008) PLoS Biology , vol.6
    • Haag-Liautard, C.1    Coffey, N.2    Houle, D.3
  • 47
    • 0001672813 scopus 로고
    • Mosaic hybrid zones
    • (eds Otte D. & Endler J.), Sinauer Associates, Sunderland, MA
    • Harrison RG, Rand D, (1989) Mosaic hybrid zones. In: Speciation and its Consequences (eds, Otte D, &, Endler J,), pp. 111-133. Sinauer Associates, Sunderland, MA.
    • (1989) Speciation and Its Consequences , pp. 111-133
    • Harrison, R.G.1    Rand, D.2
  • 48
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T, (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution, 22, 160-174.
    • (1985) Journal of Molecular Evolution , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 50
    • 84883740769 scopus 로고    scopus 로고
    • Adaptive introgression in animals: Examples and comparison to new mutation and standing variation as sources of adaptive variation
    • Hedrick PW, (2013) Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation. Molecular Ecology, 22, 4606-4618.
    • (2013) Molecular Ecology , vol.22 , pp. 4606-4618
    • Hedrick, P.W.1
  • 51
    • 18844439645 scopus 로고    scopus 로고
    • Soft sweeps: Molecular population genetics of adaptation from standing genetic variation
    • Hermisson J, Pennings PS, (2005) Soft sweeps: molecular population genetics of adaptation from standing genetic variation. Genetics, 169, 2335-2352.
    • (2005) Genetics , vol.169 , pp. 2335-2352
    • Hermisson, J.1    Pennings, P.S.2
  • 52
    • 0024258513 scopus 로고
    • Hybrid zones-Natural laboratories for evolutionary studies
    • Hewitt GM, (1988) Hybrid zones-Natural laboratories for evolutionary studies. Trends in Ecology & Evolution, 3, 158-167.
    • (1988) Trends in Ecology & Evolution , vol.3 , pp. 158-167
    • Hewitt, G.M.1
  • 53
    • 77952294620 scopus 로고    scopus 로고
    • Isolation with migration models for more than two populations
    • Hey J, (2010) Isolation with migration models for more than two populations. Molecular Biology and Evolution, 27, 905-920.
    • (2010) Molecular Biology and Evolution , vol.27 , pp. 905-920
    • Hey, J.1
  • 54
    • 3142714474 scopus 로고    scopus 로고
    • Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. Persimilis
    • Hey J, Nielsen R, (2004) Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics, 167, 747-760.
    • (2004) Genetics , vol.167 , pp. 747-760
    • Hey, J.1    Nielsen, R.2
  • 55
    • 33847253975 scopus 로고    scopus 로고
    • Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics
    • Hey J, Nielsen R, (2007) Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proceedings of the National Academy of Sciences USA, 104, 2785-2790.
    • (2007) Proceedings of the National Academy of Sciences USA , vol.104 , pp. 2785-2790
    • Hey, J.1    Nielsen, R.2
  • 56
    • 0000586830 scopus 로고
    • Using hitchhiking genes to study adaptation and divergence during speciation within the Drosophila melanogaster species complex
    • Hilton H, Kliman RM, Hey J, (1994) Using hitchhiking genes to study adaptation and divergence during speciation within the Drosophila melanogaster species complex. Evolution, 48, 1900-1913.
    • (1994) Evolution , vol.48 , pp. 1900-1913
    • Hilton, H.1    Kliman, R.M.2    Hey, J.3
  • 57
    • 0022841138 scopus 로고
    • Unidirectional incompatibility between populations of Drosophila simulans
    • Hoffmann AA, Turelli M, Simmons GM, (1986) Unidirectional incompatibility between populations of Drosophila simulans. Evolution, 40, 692-701.
    • (1986) Evolution , vol.40 , pp. 692-701
    • Hoffmann, A.A.1    Turelli, M.2    Simmons, G.M.3
  • 58
    • 0033886350 scopus 로고    scopus 로고
    • A new statistic for detecting genetic differentiation
    • Hudson RR, (2000) A new statistic for detecting genetic differentiation. Genetics, 155, 2011-2014.
    • (2000) Genetics , vol.155 , pp. 2011-2014
    • Hudson, R.R.1
  • 59
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson RR, (2002) Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics, 18, 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 60
    • 0036695118 scopus 로고    scopus 로고
    • Mathematical consequences of the genealogical species concept
    • Hudson RR, Coyne JA, (2002) Mathematical consequences of the genealogical species concept. Evolution, 56, 1557-1565.
    • (2002) Evolution , vol.56 , pp. 1557-1565
    • Hudson, R.R.1    Coyne, J.A.2
  • 61
    • 0037286419 scopus 로고    scopus 로고
    • Stochasticity overrules the "three-times rule": Genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial DNA
    • Hudson RR, Turelli M, (2003) Stochasticity overrules the "three-times rule": genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial DNA. Evolution, 57, 182-190.
    • (2003) Evolution , vol.57 , pp. 182-190
    • Hudson, R.R.1    Turelli, M.2
  • 62
    • 0029008318 scopus 로고
    • Competition between mitochondrial haplotypes in distinct nuclear genetic environments: Drosophila pseudoobscura vs. D. Persimilis
    • Hutter CM, Rand DM, (1995) Competition between mitochondrial haplotypes in distinct nuclear genetic environments: Drosophila pseudoobscura vs. D. persimilis. Genetics, 140, 537-548.
    • (1995) Genetics , vol.140 , pp. 537-548
    • Hutter, C.M.1    Rand, D.M.2
  • 63
    • 77956636684 scopus 로고    scopus 로고
    • Muller's ratchet and the degeneration of the Drosophila miranda neo-Y chromosome
    • Kaiser VB, Charlesworth B, (2010) Muller's ratchet and the degeneration of the Drosophila miranda neo-Y chromosome. Genetics, 185, 339-348.
    • (2010) Genetics , vol.185 , pp. 339-348
    • Kaiser, V.B.1    Charlesworth, B.2
  • 64
    • 70349664283 scopus 로고    scopus 로고
    • Immune activation by life-shortening Wolbachia and reduced filarial competence in mosquitoes
    • Kambris Z, Cook PE, Phuc HK, Sinkins SP, (2009) Immune activation by life-shortening Wolbachia and reduced filarial competence in mosquitoes. Science, 326, 134-136.
    • (2009) Science , vol.326 , pp. 134-136
    • Kambris, Z.1    Cook, P.E.2    Phuc, H.K.3    Sinkins, S.P.4
  • 66
    • 0028787196 scopus 로고
    • Conditional hitchhiking of mitochondrial DNA: Frequency shifts of Drosophila melanogaster mtDNA variants depend on nuclear genetic background
    • Kilpatrick ST, Rand DM, (1995) Conditional hitchhiking of mitochondrial DNA: frequency shifts of Drosophila melanogaster mtDNA variants depend on nuclear genetic background. Genetics, 141, 1113-1124.
    • (1995) Genetics , vol.141 , pp. 1113-1124
    • Kilpatrick, S.T.1    Rand, D.M.2
  • 67
    • 56449108529 scopus 로고    scopus 로고
    • Regulatory genes control a key morphological and ecological trait transferred between species
    • Kim M, Cui ML, Cubas P, et al,. (2008) Regulatory genes control a key morphological and ecological trait transferred between species. Science, 322, 1116-1119.
    • (2008) Science , vol.322 , pp. 1116-1119
    • Kim, M.1    Cui, M.L.2    Cubas, P.3
  • 68
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M, (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111-120.
    • (1980) Journal of Molecular Evolution , vol.16 , pp. 111-120
    • Kimura, M.1
  • 69
    • 0034617867 scopus 로고    scopus 로고
    • Evolutionary novelties in islands: Drosophila santomea, a new melanogaster sister species from Sao Tome
    • Lachaise D, Harry M, Solignac M, et al,. (2000) Evolutionary novelties in islands: Drosophila santomea, a new melanogaster sister species from Sao Tome. Proceedings of the Royal Society B-Biological Sciences, 267, 1487-1495.
    • (2000) Proceedings of the Royal Society B-Biological Sciences , vol.267 , pp. 1487-1495
    • Lachaise, D.1    Harry, M.2    Solignac, M.3
  • 70
    • 33645503260 scopus 로고    scopus 로고
    • Microarray analysis reveals differential gene expression in hybrid sunflower species
    • Lai Z, Gross BL, Zou Y, Andrews J, Rieseberg LH, (2006) Microarray analysis reveals differential gene expression in hybrid sunflower species. Molecular Ecology, 15, 1213-1227.
    • (2006) Molecular Ecology , vol.15 , pp. 1213-1227
    • Lai, Z.1    Gross, B.L.2    Zou, Y.3    Andrews, J.4    Rieseberg, L.H.5
  • 71
    • 35548955944 scopus 로고    scopus 로고
    • Genome clashes in hybrids: Insights from gene expression
    • Landry CR, Hartl DL, Ranz JM, (2007) Genome clashes in hybrids: insights from gene expression. Heredity, 99, 483-493.
    • (2007) Heredity , vol.99 , pp. 483-493
    • Landry, C.R.1    Hartl, D.L.2    Ranz, J.M.3
  • 72
    • 0001052929 scopus 로고
    • Hybridization as a source of variation for adaptation to new environments
    • Lewontin RC, Birch LC, (1966) Hybridization as a source of variation for adaptation to new environments. Evolution, 20, 315-336.
    • (1966) Evolution , vol.20 , pp. 315-336
    • Lewontin, R.C.1    Birch, L.C.2
  • 73
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 74
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li H, Handsaker B, Wysoker A, et al,. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3
  • 75
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 76
    • 0036860231 scopus 로고    scopus 로고
    • Genetics of a difference in pigmentation between Drosophila yakuba and Drosophila santomea
    • Llopart A, Elwyn S, Lachaise D, Coyne JA, (2002) Genetics of a difference in pigmentation between Drosophila yakuba and Drosophila santomea. Evolution, 56, 2262-2277.
    • (2002) Evolution , vol.56 , pp. 2262-2277
    • Llopart, A.1    Elwyn, S.2    Lachaise, D.3    Coyne, J.A.4
  • 77
    • 30344455915 scopus 로고    scopus 로고
    • An anomalous hybrid zone in Drosophila
    • Llopart A, Lachaise D, Coyne JA, (2005a) An anomalous hybrid zone in Drosophila. Evolution, 59, 2602-2607.
    • (2005) Evolution , vol.59 , pp. 2602-2607
    • Llopart, A.1    Lachaise, D.2    Coyne, J.A.3
  • 78
    • 26444507340 scopus 로고    scopus 로고
    • Multilocus analysis of introgression between two sympatric sister species of Drosophila: Drosophila yakuba and D. Santomea
    • Llopart A, Lachaise D, Coyne JA, (2005b) Multilocus analysis of introgression between two sympatric sister species of Drosophila: Drosophila yakuba and D. santomea. Genetics, 171, 197-210.
    • (2005) Genetics , vol.171 , pp. 197-210
    • Llopart, A.1    Lachaise, D.2    Coyne, J.A.3
  • 79
    • 33646755364 scopus 로고    scopus 로고
    • Quantifying the genomic decay paradox due to Muller's ratchet in human mitochondrial DNA
    • Loewe L, (2006) Quantifying the genomic decay paradox due to Muller's ratchet in human mitochondrial DNA. Genetical Research, 87, 133-159.
    • (2006) Genetical Research , vol.87 , pp. 133-159
    • Loewe, L.1
  • 80
    • 0025682946 scopus 로고
    • Mutation load and the survival of small populations
    • Lynch M, Gabriel W, (1990) Mutation load and the survival of small populations. Evolution, 44, 1725-1737.
    • (1990) Evolution , vol.44 , pp. 1725-1737
    • Lynch, M.1    Gabriel, W.2
  • 83
    • 0036215045 scopus 로고    scopus 로고
    • Inferring the history of speciation from multilocus DNA sequence data: The case of Drosophila pseudoobscura and close relatives
    • Machado CA, Kliman RM, Markert JA, Hey J, (2002) Inferring the history of speciation from multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives. Molecular Biology and Evolution, 19, 472-488.
    • (2002) Molecular Biology and Evolution , vol.19 , pp. 472-488
    • Machado, C.A.1    Kliman, R.M.2    Markert, J.A.3    Hey, J.4
  • 84
    • 0024097331 scopus 로고
    • Evidence for non-neutrality of mitochondrial DNA haplotypes in Drosophila pseudoobscura
    • MacRae AF, Anderson WW, (1988) Evidence for non-neutrality of mitochondrial DNA haplotypes in Drosophila pseudoobscura. Genetics, 120, 485-494.
    • (1988) Genetics , vol.120 , pp. 485-494
    • MacRae, A.F.1    Anderson, W.W.2
  • 85
    • 17844367344 scopus 로고    scopus 로고
    • Hybridization as an invasion of the genome
    • Mallet J, (2005) Hybridization as an invasion of the genome. Trends in Ecology & Evolution, 20, 229-237.
    • (2005) Trends in Ecology & Evolution , vol.20 , pp. 229-237
    • Mallet, J.1
  • 86
    • 77950564670 scopus 로고    scopus 로고
    • Reinforcement of gametic isolation in Drosophila
    • Matute DR, (2010) Reinforcement of gametic isolation in Drosophila. PLoS Biology, 8, e1000341.
    • (2010) PLoS Biology , vol.8
    • Matute, D.R.1
  • 87
    • 77954976914 scopus 로고    scopus 로고
    • Intrinsic reproductive isolation between two sister species of Drosophila
    • Matute DR, Coyne JA, (2009) Intrinsic reproductive isolation between two sister species of Drosophila. Evolution, 64, 903-920.
    • (2009) Evolution , vol.64 , pp. 903-920
    • Matute, D.R.1    Coyne, J.A.2
  • 89
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favorable gene
    • Maynard Smith J, Haigh J, (1974) The hitch-hiking effect of a favorable gene. Genetical Research, 23, 23-35.
    • (1974) Genetical Research , vol.23 , pp. 23-35
    • Maynard Smith, J.1    Haigh, J.2
  • 90
    • 33744497339 scopus 로고    scopus 로고
    • The genetic basis of postzygotic reproductive isolation between Drosophila santomea and D. Yakuba due to hybrid male sterility
    • Moehring AJ, Llopart A, Elwyn S, Coyne JA, Mackay TF, (2006a) The genetic basis of postzygotic reproductive isolation between Drosophila santomea and D. yakuba due to hybrid male sterility. Genetics, 173, 225-233.
    • (2006) Genetics , vol.173 , pp. 225-233
    • Moehring, A.J.1    Llopart, A.2    Elwyn, S.3    Coyne, J.A.4    Mackay, T.F.5
  • 91
    • 33744469618 scopus 로고    scopus 로고
    • The genetic basis of prezygotic reproductive isolation between Drosophila santomea and D. Yakuba due to mating preference
    • Moehring AJ, Llopart A, Elwyn S, Coyne JA, Mackay TF, (2006b) The genetic basis of prezygotic reproductive isolation between Drosophila santomea and D. yakuba due to mating preference. Genetics, 173, 215-223.
    • (2006) Genetics , vol.173 , pp. 215-223
    • Moehring, A.J.1    Llopart, A.2    Elwyn, S.3    Coyne, J.A.4    Mackay, T.F.5
  • 92
    • 0030845166 scopus 로고    scopus 로고
    • Synonymous substitution rates in Drosophila: Mitochondrial versus nuclear genes
    • Moriyama EN, Powell JR, (1997) Synonymous substitution rates in Drosophila: mitochondrial versus nuclear genes. Journal of Molecular Evolution, 45, 378-391.
    • (1997) Journal of Molecular Evolution , vol.45 , pp. 378-391
    • Moriyama, E.N.1    Powell, J.R.2
  • 93
    • 50549201557 scopus 로고
    • The relation of recombination to mutational advance
    • Muller HJ, (1964) The relation of recombination to mutational advance. Mutation Research, 106, 2-9.
    • (1964) Mutation Research , vol.106 , pp. 2-9
    • Muller, H.J.1
  • 94
    • 84879287544 scopus 로고    scopus 로고
    • High levels of gene expression explain the strong evolutionary constraint of mitochondrial protein-coding genes
    • Nabholz B, Ellegren H, Wolf JB, (2013) High levels of gene expression explain the strong evolutionary constraint of mitochondrial protein-coding genes. Molecular Biology and Evolution, 30, 272-284.
    • (2013) Molecular Biology and Evolution , vol.30 , pp. 272-284
    • Nabholz, B.1    Ellegren, H.2    Wolf, J.B.3
  • 95
    • 0034967295 scopus 로고    scopus 로고
    • Distinguishing migration from isolation: A Markov chain Monte Carlo approach
    • Nielsen R, Wakeley J, (2001) Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics, 158, 885-896.
    • (2001) Genetics , vol.158 , pp. 885-896
    • Nielsen, R.1    Wakeley, J.2
  • 96
    • 0025337473 scopus 로고
    • Is there selection on RFLP differences in mitochondrial DNA?
    • Nigro L, Prout T, (1990) Is there selection on RFLP differences in mitochondrial DNA? Genetics, 125, 551-555.
    • (1990) Genetics , vol.125 , pp. 551-555
    • Nigro, L.1    Prout, T.2
  • 97
    • 78149422271 scopus 로고    scopus 로고
    • Multiple hybridization events between Drosophila simulans and Drosophila mauritiana are supported by mtDNA introgression
    • Nunes MD, Wengel PO, Kreissl M, Schlotterer C, (2010) Multiple hybridization events between Drosophila simulans and Drosophila mauritiana are supported by mtDNA introgression. Molecular Ecology, 19, 4695-4707.
    • (2010) Molecular Ecology , vol.19 , pp. 4695-4707
    • Nunes, M.D.1    Wengel, P.O.2    Kreissl, M.3    Schlotterer, C.4
  • 98
    • 0036340979 scopus 로고    scopus 로고
    • The population genetics of adaptation: The adaptation of DNA sequences
    • Orr HA, (2002) The population genetics of adaptation: the adaptation of DNA sequences. Evolution, 56, 1317-1330.
    • (2002) Evolution , vol.56 , pp. 1317-1330
    • Orr, H.A.1
  • 99
    • 13144257707 scopus 로고    scopus 로고
    • The genetic theory of adaptation: A brief history
    • Orr HA, (2005) The genetic theory of adaptation: a brief history. Nature Reviews Genetics, 6, 119-127.
    • (2005) Nature Reviews Genetics , vol.6 , pp. 119-127
    • Orr, H.A.1
  • 100
    • 0035109378 scopus 로고    scopus 로고
    • Haldane's sieve and adaptation from the standing genetic variation
    • Orr HA, Betancourt AJ, (2001) Haldane's sieve and adaptation from the standing genetic variation. Genetics, 157, 875-884.
    • (2001) Genetics , vol.157 , pp. 875-884
    • Orr, H.A.1    Betancourt, A.J.2
  • 101
    • 84868152411 scopus 로고    scopus 로고
    • Distinguishing between selective sweeps from standing variation and from a de novo mutation
    • Peter BM, Huerta-Sanchez E, Nielsen R, (2012) Distinguishing between selective sweeps from standing variation and from a de novo mutation. PLoS Genetics, 8, e1003011.
    • (2012) PLoS Genetics , vol.8
    • Peter, B.M.1    Huerta-Sanchez, E.2    Nielsen, R.3
  • 102
    • 0020652396 scopus 로고
    • Interspecific cytoplasmic gene flow in the absence of nuclear gene flow: Evidence from Drosophila
    • Powell JR, (1983) Interspecific cytoplasmic gene flow in the absence of nuclear gene flow: evidence from Drosophila. Proceedings of the National Academy of Sciences USA, 80, 492-495.
    • (1983) Proceedings of the National Academy of Sciences USA , vol.80 , pp. 492-495
    • Powell, J.R.1
  • 103
    • 0036196885 scopus 로고    scopus 로고
    • The signature of positive selection at randomly chosen loci
    • Przeworski M, (2002) The signature of positive selection at randomly chosen loci. Genetics, 160, 1179-1189.
    • (2002) Genetics , vol.160 , pp. 1179-1189
    • Przeworski, M.1
  • 104
    • 59349107762 scopus 로고    scopus 로고
    • Evolution: Replacing genes and traits through hybridization
    • Rieseberg LH, (2009) Evolution: replacing genes and traits through hybridization. Current Biology, 19, R119-R122.
    • (2009) Current Biology , vol.19
    • Rieseberg, L.H.1
  • 105
    • 79961214208 scopus 로고    scopus 로고
    • Adaptive introgression: The seeds of resistance
    • Rieseberg L, (2011) Adaptive introgression: the seeds of resistance. Current Biology, 21, R581-R583.
    • (2011) Current Biology , vol.21
    • Rieseberg, L.1
  • 106
    • 0002443665 scopus 로고
    • Introgression and its consequences in plants
    • (ed Harrison R.G.), Oxford University Press, New York
    • Rieseberg LH, Wendel JF, (1993) Introgression and its consequences in plants. In: Hybrid Zones and the Evolutionary Process (ed, Harrison RG,), pp. 70-109. Oxford University Press, New York.
    • (1993) Hybrid Zones and the Evolutionary Process , pp. 70-109
    • Rieseberg, L.H.1    Wendel, J.F.2
  • 107
    • 0032755574 scopus 로고    scopus 로고
    • Transgressive segregation, adaptation and speciation
    • Rieseberg LH, Archer MA, Wayne RK, (1999) Transgressive segregation, adaptation and speciation. Heredity, 83 (Pt 4), 363-372.
    • (1999) Heredity , vol.83 , Issue.PART 4 , pp. 363-372
    • Rieseberg, L.H.1    Archer, M.A.2    Wayne, R.K.3
  • 108
    • 0038304502 scopus 로고    scopus 로고
    • The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations
    • Rieseberg LH, Widmer A, Arntz AM, Burke JM, (2003) The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations. Philosophical Transactions of the Royal Society B, 358, 1141-1147.
    • (2003) Philosophical Transactions of the Royal Society B , vol.358 , pp. 1141-1147
    • Rieseberg, L.H.1    Widmer, A.2    Arntz, A.M.3    Burke, J.M.4
  • 109
    • 0023375195 scopus 로고
    • The Neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M, (1987) The Neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 404-425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 404-425
    • Saitou, N.1    Nei, M.2
  • 111
    • 1642375725 scopus 로고    scopus 로고
    • Hybridization and adaptive radiation
    • Seehausen O, (2004) Hybridization and adaptive radiation. Trends in Ecology & Evolution, 19, 198-207.
    • (2004) Trends in Ecology & Evolution , vol.19 , pp. 198-207
    • Seehausen, O.1
  • 113
    • 79961237322 scopus 로고    scopus 로고
    • Adaptive introgression of anticoagulant rodent poison resistance by hybridization between old world mice
    • Song Y, Endepols S, Klemann N, et al,. (2011) Adaptive introgression of anticoagulant rodent poison resistance by hybridization between old world mice. Current Biology, 21, 1296-1301.
    • (2011) Current Biology , vol.21 , pp. 1296-1301
    • Song, Y.1    Endepols, S.2    Klemann, N.3
  • 114
    • 84866150090 scopus 로고    scopus 로고
    • Genome patterns of selection and introgression of haplotypes in natural populations of the house mouse (Mus musculus)
    • Staubach F, Lorenc A, Messer PW, et al,. (2012) Genome patterns of selection and introgression of haplotypes in natural populations of the house mouse (Mus musculus). PLoS Genetics, 8, e1002891.
    • (2012) PLoS Genetics , vol.8
    • Staubach, F.1    Lorenc, A.2    Messer, P.W.3
  • 117
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F, (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 119
    • 1242352089 scopus 로고    scopus 로고
    • Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks
    • Tamura K, Subramanian S, Kumar S, (2004) Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Molecular Biology and Evolution, 21, 36-44.
    • (2004) Molecular Biology and Evolution , vol.21 , pp. 36-44
    • Tamura, K.1    Subramanian, S.2    Kumar, S.3
  • 120
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, et al,. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731-2739.
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3
  • 121
    • 38049094991 scopus 로고    scopus 로고
    • Genome-wide patterns of gene flow across a house mouse hybrid zone
    • Teeter KC, Payseur BA, Harris LW, et al,. (2008) Genome-wide patterns of gene flow across a house mouse hybrid zone. Genome Research, 18, 67-76.
    • (2008) Genome Research , vol.18 , pp. 67-76
    • Teeter, K.C.1    Payseur, B.A.2    Harris, L.W.3
  • 122
    • 58149143149 scopus 로고    scopus 로고
    • The bacterial symbiont Wolbachia induces resistance to RNA viral infections in Drosophila melanogaster
    • Teixeira L, Ferreira A, Ashburner M, (2008) The bacterial symbiont Wolbachia induces resistance to RNA viral infections in Drosophila melanogaster. PLoS Biology, 6, e2.
    • (2008) PLoS Biology , vol.6
    • Teixeira, L.1    Ferreira, A.2    Ashburner, M.3
  • 123
    • 84863496231 scopus 로고    scopus 로고
    • Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
    • The Heliconius Genome Consortium
    • The Heliconius Genome Consortium (2012) Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature, 487, 94-98.
    • (2012) Nature , vol.487 , pp. 94-98
  • 124
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25, 4876-4882.
    • (1997) Nucleic Acids Research , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 125
    • 0025919153 scopus 로고
    • Rapid spread of an inherited incompatibility factor in California Drosophila
    • Turelli M, Hoffmann AA, (1991) Rapid spread of an inherited incompatibility factor in California Drosophila. Nature, 353, 440-442.
    • (1991) Nature , vol.353 , pp. 440-442
    • Turelli, M.1    Hoffmann, A.A.2
  • 126
    • 0026737744 scopus 로고
    • Dynamics of cytoplasmic incompatibility and mtDNA variation in natural Drosophila simulans populations
    • Turelli M, Hoffmann AA, McKechnie SW, (1992) Dynamics of cytoplasmic incompatibility and mtDNA variation in natural Drosophila simulans populations. Genetics, 132, 713-723.
    • (1992) Genetics , vol.132 , pp. 713-723
    • Turelli, M.1    Hoffmann, A.A.2    McKechnie, S.W.3
  • 127
    • 33745712000 scopus 로고    scopus 로고
    • Adaptive introgression of herbivore resistance traits in the weedy sunflower Helianthus annuus
    • Whitney KD, Randell RA, Rieseberg LH, (2006) Adaptive introgression of herbivore resistance traits in the weedy sunflower Helianthus annuus. American Naturalist, 167, 794-807.
    • (2006) American Naturalist , vol.167 , pp. 794-807
    • Whitney, K.D.1    Randell, R.A.2    Rieseberg, L.H.3
  • 128
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z, (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Computer Applications in Biosciences, 13, 555-556.
    • (1997) Computer Applications in Biosciences , vol.13 , pp. 555-556
    • Yang, Z.1
  • 129
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution, 24, 1586-1591.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 130
    • 3142723287 scopus 로고    scopus 로고
    • Natural Wolbachia infections in the Drosophila yakuba species complex do not induce cytoplasmic incompatibility but fully rescue the wRi modification
    • Zabalou S, Charlat S, Nirgianaki A, et al,. (2004) Natural Wolbachia infections in the Drosophila yakuba species complex do not induce cytoplasmic incompatibility but fully rescue the wRi modification. Genetics, 167, 827-834.
    • (2004) Genetics , vol.167 , pp. 827-834
    • Zabalou, S.1    Charlat, S.2    Nirgianaki, A.3


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