The quantitative genetics of transcription

Trends in Genetics

Volumn 21, Issue 11, 2005, Pages 616-623

  Gibson, Greg ^a   Weir, Bruce ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ENVIRONMENTAL FACTOR; EPISTASIS; EVOLUTION; GENE EXPRESSION; GENE MAPPING; GENETIC LINKAGE; GENETIC POLYMORPHISM; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; GENOTYPE; HERITABILITY; HUMAN; MUTATIONAL ANALYSIS; NONHUMAN; PHENOTYPE; POPULATION; PRIORITY JOURNAL; QUANTITATIVE GENETICS; QUANTITATIVE TRAIT LOCUS; REVIEW; SEGREGATION ANALYSIS; STATISTICAL ANALYSIS;

CHI-SQUARE DISTRIBUTION; CHROMOSOME MAPPING; EVOLUTION, MOLECULAR; HUMANS; QUANTITATIVE TRAIT LOCI; TRANSCRIPTION, GENETIC; VARIATION (GENETICS);

EID: 26444519157     PISSN: 01689525     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tig.2005.08.010     Document Type: Review

References (56)

1. M. Lynch, and B. Walsh Genetics and Analysis of Quantitative Traits 1997 Sinauer
2. T.F. Mackay The genetic architecture of quantitative traits Annu. Rev. Genet. 35 2001 303 339
3. J.A. Stamatoyannopoulos The genomics of gene expression Genomics 84 2004 449 457
4. D. Cavalieri Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis Proc. Natl. Acad. Sci. U. S. A. 97 2000 12369 12374
5. J.P. Townsend Population genetic variation in genome-wide gene expression Mol. Biol. Evol. 20 2003 955 963
6. R. Sandberg Regional and strain-specific gene expression mapping in the adult mouse brain Proc. Natl. Acad. Sci. U. S. A. 97 2000 11038 11043
7. P. Pavlidis, and W.S. Noble Analysis of strain and regional variation in gene expression in mouse brain Genome Biol. 2 2001 10.1186/gb-2001-2-10- research0042 (http://genomebiology.com/2001/2/10/research/0042 )
8. W. Jin The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster Nat. Genet. 29 2001 389 395
9. S.A. Rifkin Evolution of gene expression in the Drosophila melanogaster subgroup Nat. Genet. 33 2003 138 144
10. C.D. Meiklejohn Rapid evolution of male-biased gene expression in Drosophila Proc. Natl. Acad. Sci. U. S. A. 100 2003 9894 9899
11. M.F. Oleksiak Variation in gene expression within and among natural populations Nat. Genet. 32 2002 261 266
12. M.F. Oleksiak Natural variation in cardiac metabolism and gene expression in Fundulus heteroclitus Nat. Genet. 37 2005 67 72
13. A.R. Whitney Individuality and variation in gene expression patterns in human blood Proc. Natl. Acad. Sci. U. S. A. 100 2003 1896 1901
14. J.P. Radich Individual-specific variation of gene expression in peripheral blood leukocytes Genomics 83 2004 980 988
15. V.G. Cheung Natural variation in human gene expression assessed in lymphoblastoid cells Nat. Genet. 33 2003 422 425
16. M. Morley Genetic analysis of genome-wide variation in human gene expression Nature 430 2004 743 747
17. S.A. Monks Genetic inheritance of gene expression in human cell lines Am. J. Hum. Genet. 75 2004 1094 1105
18. D.J. de Koning, and C.S. Haley Genetical genomics in humans and model organisms Trends Genet. 21 2005 377 381
19. T. Mukai The genetic structure of natural populations of Drosophila melanogaster. I. Spontaneous mutation rate of polygenes controlling viability Genetics 50 1964 1 19
20. D.R. Denver The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans Nat. Genet. 37 2005 544 584
21. P.J. Wittkopp Evolutionary changes in cis and trans gene regulation Nature 430 2004 85 88
22. G. Gibson Extensive sex-specific nonadditivity of gene expression in Drosophila melanogaster Genetics 167 2004 1791 1799
23. D.L. Auger Nonadditive gene expression in diploid and triploid hybrids of maize Genetics 169 2005 389 397
24. Q.X. Sun Differential gene expression patterns in leaves between hybrids and their parental inbreds are correlated with heterosis in a diallelic cross Plant Sci. 166 2004 651 657
25. D. Hedgecock Analysis of gene expression in hybrid Pacific oysters by massively parallel signature sequencing Plant & Animal Genome X Conference Abstract 2002 (http://www.intl-pag.org/pag/10/abstracts/PAGX_W15.html )
26. M.L. Wayne Additivity and trans-acting effects on gene expression in male Drosophila simulans Genetics 168 2004 1413 1420
27. J.A. Birchler Dosage balance in gene regulation: biological implications Trends Genet. 21 2005 219 226
28. N.G. Saran Global disruption of the cerebellar transcriptome in a Down syndrome mouse model Hum. Mol. Genet. 12 2003 2013 2019
29. G. Gibson, and I. Dworkin Uncovering cryptic genetic variation Nat. Rev. Genet. 5 2004 681 690
30. R.C. Jansen, and J.P. Nap Genetical genomics: the added value from segregation Trends Genet. 17 2001 388 391
31. M. Farrall Quantitative genetic variation: a post-modern view Hum. Mol. Genet. 13 2004 R1 R7
32. R.B. Brem Genetic dissection of transcriptional regulation in budding yeast Science 296 2002 752 755
33. G. Yvert Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors Nat. Genet. 35 2003 57 64
34. M. Kirst Coordinated genetic regulation of growth and lignin revealed by quantitative trait locus analysis of cDNA microarray data in an interspecific backcross of eucalyptus Plant Physiol. 135 2004 2368 2378
35. E.E. Schadt Genetics of gene expression surveyed in maize, mouse and man Nature 422 2003 297 302
36. L. Bystrykh Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics' Nat. Genet. 37 2005 225 232
37. E.J. Chesler Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function Nat. Genet. 37 2005 233 242
38. N. Hubner Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease Nat. Genet. 37 2005 243 253
39. Beavis, W.D. (1994) The power and deceit of QTL experiments: lessons from comparative QTL studies. In: 49th Annual Corn and Sorghum Research Conference, pp. 252-268, American Seed Trade Association
40. M. Pérez-Enciso In silico study of transcriptome genetic variation in outbred populations Genetics 166 2004 547 554
41. S. Doss Cis-acting expression quantitative trait loci in mice Genome Res. 15 2005 681 691
42. J.D. Storey Multiple locus linkage analysis of genomewide expression in yeast PLoS Biol. e267 2005
43. C.H. Kao Multiple interval mapping for quantitative trait loci Genetics 152 1999 1203 1216
44. J.D. Storey, and R. Tibshirani Statistical significance for genomewide studies Proc. Natl. Acad. Sci. U. S. A. 100 2003 9440 9445
45. R.B. Brem, and L. Kruglyak The landscape of genetic complexity across 5,700 gene expression traits in yeast Proc. Natl. Acad. Sci. U. S. A. 102 2005 1572 1577
46. K.Y. Yeung Model-based clustering and data transformations for gene expression data Bioinformatics 17 2001 977 987
47. G. Gibson Population genomics: celebrating individual expression Heredity 90 2003 1 2
48. B.S. Weir, and W.G. Hill Estimating F-statistics Annu. Rev. Genet. 36 2002 721 750
49. K. Ritland Marker-inferred relatedness as a tool for detecting heritability in nature Mol. Ecol. 9 2000 1195 1204
50. R.C. Lewontin Detecting population differences in quantitative characters as opposed to gene frequencies Am. Nat. 123 1984 115 124
51. A.R. Rogers Population differences in quantitative characters as opposed to gene frequencies Am. Nat. 127 1986 729 730
52. J. Felsenstein Population differences in quantitative characters and gene frequencies: a comment on papers by Lewontin and Rogers Am. Nat. 127 1986 731 732
53. R.C. Lewontin A comment on the comments of Rogers and Felsenstein Am. Nat. 127 1986 733 734
54. J. Merilä, and P. Crnokrak Comparison of genetic differentiation at marker loci and quantitative traits J. Evol. Biol. 14 2001 892 903
55. M.V. Rockman Positive selection on a human-specific transcription factor binding site regulating IL4 expression Curr. Biol. 13 2003 2118 2123
56. M.V. Rockman Positive selection on MMP3 regulation has shaped heart disease risk Curr. Biol. 14 2004 1531 1539