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Volumn 6, Issue 8, 2008, Pages 1706-1714

Direct estimation of the mitochondrial DNA mutation rate in Drosophila melanogaster

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

EID: 50249175024     PISSN: 15449173     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.0060204     Document Type: Article
Times cited : (235)

References (48)
  • 2
    • 1642285792 scopus 로고    scopus 로고
    • The incomplete natural history of mitochondria
    • Ballard JWO, Whitlock MC (2004) The incomplete natural history of mitochondria. Mol Ecol 13: 729-744.
    • (2004) Mol Ecol , vol.13 , pp. 729-744
    • Ballard, J.W.O.1    Whitlock, M.C.2
  • 4
    • 0037372985 scopus 로고    scopus 로고
    • The pedigree rate of sequence divergence in the human mitochondrial genome: There is a difference between phylogenetic and pedigree rates
    • Howell N, Smejkal CB, Mackey DA, Chinnery PF, Turnbull DM, et al. (2003) The pedigree rate of sequence divergence in the human mitochondrial genome: there is a difference between phylogenetic and pedigree rates. Am J Hum Genet 72: 659-670.
    • (2003) Am J Hum Genet , vol.72 , pp. 659-670
    • Howell, N.1    Smejkal, C.B.2    Mackey, D.A.3    Chinnery, P.F.4    Turnbull, D.M.5
  • 5
    • 40149088460 scopus 로고    scopus 로고
    • Mitigating mutational meltdown in mammalian mitochondria
    • doi:10.1371/journal.pbio.0060035
    • Rand DM (2008) Mitigating mutational meltdown in mammalian mitochondria. PLoS Biol 6: e35. doi:10.1371/journal.pbio.0060035
    • (2008) PLoS Biol , vol.6
    • Rand, D.M.1
  • 6
    • 33646755364 scopus 로고    scopus 로고
    • Quantifying the genomic decay paradox due to Muller's ratchet in human mitochondrial DNA
    • Loewe L (2006) Quantifying the genomic decay paradox due to Muller's ratchet in human mitochondrial DNA. Genet Res 87: 133-159.
    • (2006) Genet Res , vol.87 , pp. 133-159
    • Loewe, L.1
  • 7
    • 17744393686 scopus 로고    scopus 로고
    • Mitochondrial DNA mutations in human disease
    • Taylor RW, Turnbull DM (2005) Mitochondrial DNA mutations in human disease. Nat Rev Genet 6: 389-402.
    • (2005) Nat Rev Genet , vol.6 , pp. 389-402
    • Taylor, R.W.1    Turnbull, D.M.2
  • 8
    • 33745410626 scopus 로고    scopus 로고
    • Mitochondrial disease
    • Schapira AHV (2006) Mitochondrial disease. Lancet 368: 70-82.
    • (2006) Lancet , vol.368 , pp. 70-82
    • Schapira, A.H.V.1
  • 9
    • 0038192329 scopus 로고    scopus 로고
    • Mitochondrial genotype affects fitness in Drosophila simulans
    • James AC, Ballard JWO (2003) Mitochondrial genotype affects fitness in Drosophila simulans. Genetics 164: 187-194.
    • (2003) Genetics , vol.164 , pp. 187-194
    • James, A.C.1    Ballard, J.W.O.2
  • 10
    • 0033928041 scopus 로고    scopus 로고
    • Comparative genomics of mitochondrial DNA in Drosophila simulans
    • Ballard JWO (2000) Comparative genomics of mitochondrial DNA in Drosophila simulans. J Mol Evol 51: 64-75.
    • (2000) J Mol Evol , vol.51 , pp. 64-75
    • Ballard, J.W.O.1
  • 11
    • 35948940895 scopus 로고    scopus 로고
    • Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans
    • doi:10.1371/journal.pbio.0050310
    • Begun DJ, Holloway AK, Stevens K, Hillier LW, Pohl Y-P, et al. (2007) Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biol 5: e310. doi:10.1371/journal.pbio.0050310
    • (2007) PLoS Biol , vol.5
    • Begun, D.J.1    Holloway, A.K.2    Stevens, K.3    Hillier, L.W.4    Pohl, Y.-P.5
  • 12
    • 1442340284 scopus 로고    scopus 로고
    • How do insect nuclear and mitochondrial gene substitution patterns differ? Insights from Bayesian analyses of combined datasets
    • Lin CP, Danforth BN (2004) How do insect nuclear and mitochondrial gene substitution patterns differ? Insights from Bayesian analyses of combined datasets. Mol Phylogenetics Evol 30: 686-702.
    • (2004) Mol Phylogenetics Evol , vol.30 , pp. 686-702
    • Lin, C.P.1    Danforth, B.N.2
  • 14
    • 0034003411 scopus 로고    scopus 로고
    • Comparison of fluorescent single-strand conformation polymorphism analysis and denaturing high-performance liquid chromatography for detection of EXT1 and EXT2 mutations in hereditary multiple exostoses
    • Dobson-Stone C, Cox RD, Lonie L, Southam L, Fraser M, et al. (2000) Comparison of fluorescent single-strand conformation polymorphism analysis and denaturing high-performance liquid chromatography for detection of EXT1 and EXT2 mutations in hereditary multiple exostoses. Eur J Hum Genet 8: 24-32.
    • (2000) Eur J Hum Genet , vol.8 , pp. 24-32
    • Dobson-Stone, C.1    Cox, R.D.2    Lonie, L.3    Southam, L.4    Fraser, M.5
  • 15
    • 0032529112 scopus 로고    scopus 로고
    • Blind analysis of denaturing high-performance liquid chromatography as a tool for mutation detection
    • O'Donovan MC, Oefner PJ, Roberts SC, Austin J, Hoogendoorn B, et al. (1998) Blind analysis of denaturing high-performance liquid chromatography as a tool for mutation detection. Genomics 52: 44-49.
    • (1998) Genomics , vol.52 , pp. 44-49
    • O'Donovan, M.C.1    Oefner, P.J.2    Roberts, S.C.3    Austin, J.4    Hoogendoorn, B.5
  • 16
    • 33846047594 scopus 로고    scopus 로고
    • Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila
    • Haag-Liautard C, Dorris M, Maside X, Macaskill S, Halligan DL, et al. (2007) Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Nature 445: 82-85.
    • (2007) Nature , vol.445 , pp. 82-85
    • Haag-Liautard, C.1    Dorris, M.2    Maside, X.3    Macaskill, S.4    Halligan, D.L.5
  • 17
    • 0001761899 scopus 로고
    • Evolution and population genetics of organelle genes: Mechanisms and models
    • Selander RK, Clark AG, Whittam TS, editors. Sunderland Massachusetts, Sinauer. pp
    • Birky CW Jr (1991) Evolution and population genetics of organelle genes: mechanisms and models. In: Evolution at the molecular level. In: Selander RK, Clark AG, Whittam TS, editors. Sunderland (Massachusetts): Sinauer. pp. 112-134.
    • (1991) Evolution at the molecular level , pp. 112-134
    • Birky Jr, C.W.1
  • 18
    • 0023932508 scopus 로고
    • Drosophila melanogaster mitochondrial DNA - gene organization and evolutionary considerations
    • Garesse R (1988) Drosophila melanogaster mitochondrial DNA - gene organization and evolutionary considerations. Genetics 118: 649-663.
    • (1988) Genetics , vol.118 , pp. 649-663
    • Garesse, R.1
  • 19
    • 0041817645 scopus 로고    scopus 로고
    • Translational selection and yeast proteome evolution
    • Akashi H (2005) Translational selection and yeast proteome evolution. Genetics 164: 1291-1303.
    • (2005) Genetics , vol.164 , pp. 1291-1303
    • Akashi, H.1
  • 20
    • 7344244917 scopus 로고    scopus 로고
    • Mutation and selection at silent and replacement sites in the evolution of animal mitochondrial DNA
    • Rand DM, Kann LM (1998). Mutation and selection at silent and replacement sites in the evolution of animal mitochondrial DNA. Genetica 102/103: 393-407.
    • (1998) Genetica , vol.102-103 , pp. 393-407
    • Rand, D.M.1    Kann, L.M.2
  • 21
    • 0031950474 scopus 로고    scopus 로고
    • Asymmetrical directional mutation pressure in the mitochondrial genome of mammals
    • Reyes A, Gissi C, Pesole G, Saccone C (1998) Asymmetrical directional mutation pressure in the mitochondrial genome of mammals. Mol Biol Evol 15: 957-966.
    • (1998) Mol Biol Evol , vol.15 , pp. 957-966
    • Reyes, A.1    Gissi, C.2    Pesole, G.3    Saccone, C.4
  • 22
    • 0242318326 scopus 로고    scopus 로고
    • Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes
    • Faith JJ, Pollock DD (2003) Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes. Genetics 165: 735-745.
    • (2003) Genetics , vol.165 , pp. 735-745
    • Faith, J.J.1    Pollock, D.D.2
  • 23
    • 0026703303 scopus 로고
    • The rate and pattern of nucleotide substitution in Drosophila mitochondrial DNA
    • Tamura K (1992) The rate and pattern of nucleotide substitution in Drosophila mitochondrial DNA. Mol Biol Evol 9: 814-825.
    • (1992) Mol Biol Evol , vol.9 , pp. 814-825
    • Tamura, K.1
  • 24
    • 0033914873 scopus 로고    scopus 로고
    • Comparative genomics of mitochondrial DNA in members of the Drosophila melanogaster subgroup
    • Ballard JWO (2000) Comparative genomics of mitochondrial DNA in members of the Drosophila melanogaster subgroup. J Mol Evol 51: 48-63.
    • (2000) J Mol Evol , vol.51 , pp. 48-63
    • Ballard, J.W.O.1
  • 25
    • 12044252216 scopus 로고
    • Compositional effects and weighting of nucleotide sequences for phylogenetic analysis
    • Collins TM, Kraus F, Estabrook G (1994) Compositional effects and weighting of nucleotide sequences for phylogenetic analysis. Syst Biol 43: 449-459.
    • (1994) Syst Biol , vol.43 , pp. 449-459
    • Collins, T.M.1    Kraus, F.2    Estabrook, G.3
  • 26
    • 0032434101 scopus 로고    scopus 로고
    • Problems with parsimony in sequences of biased base composition
    • Eyre-Walker A (1998) Problems with parsimony in sequences of biased base composition. J Mol Evol 47: 686-690.
    • (1998) J Mol Evol , vol.47 , pp. 686-690
    • Eyre-Walker, A.1
  • 27
    • 20444427160 scopus 로고    scopus 로고
    • Time dependency of molecular rate estimates and systematic overestimation of recent divergence times
    • Ho SYW, Phillips MJ, Cooper A, Drummond AJ (2005) Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Mol Biol Evol 22: 1561-1568.
    • (2005) Mol Biol Evol , vol.22 , pp. 1561-1568
    • Ho, S.Y.W.1    Phillips, M.J.2    Cooper, A.3    Drummond, A.J.4
  • 28
    • 0035673444 scopus 로고    scopus 로고
    • The units of selection on mitochondrial DNA
    • Rand DM (2001) The units of selection on mitochondrial DNA. Ann Rev Ecol Syst 32: 415-448.
    • (2001) Ann Rev Ecol Syst , vol.32 , pp. 415-448
    • Rand, D.M.1
  • 29
    • 0034730598 scopus 로고    scopus 로고
    • High direct estimate of the mutation rate in the mitochondrial genome of Caenorhabditis elegans
    • Denver DR, Morris K, Lynch M, Vassilieva LL, Thomas WK (2000) High direct estimate of the mutation rate in the mitochondrial genome of Caenorhabditis elegans. Science 289: 2342-2344.
    • (2000) Science , vol.289 , pp. 2342-2344
    • Denver, D.R.1    Morris, K.2    Lynch, M.3    Vassilieva, L.L.4    Thomas, W.K.5
  • 30
    • 3943059570 scopus 로고    scopus 로고
    • High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome
    • Denver DR, Morris K, Lynch M, Thomas WK (2004) High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome. Nature 430: 679-682.
    • (2004) Nature , vol.430 , pp. 679-682
    • Denver, D.R.1    Morris, K.2    Lynch, M.3    Thomas, W.K.4
  • 32
    • 0000610030 scopus 로고
    • Drosophila mitochondrial genetics - evolution of heteroplasmy through germ line cell divisions
    • Solignac M, Genermont J, Monnerot M, Mounolou J-C (1987) Drosophila mitochondrial genetics - evolution of heteroplasmy through germ line cell divisions. Genetics 117: 687-696.
    • (1987) Genetics , vol.117 , pp. 687-696
    • Solignac, M.1    Genermont, J.2    Monnerot, M.3    Mounolou, J.-C.4
  • 33
    • 0029078029 scopus 로고
    • Biological basis of germline mutation - comparisons of spontaneous germline mutation-rates among Drosophila, mouse, and human
    • Drost JB, Lee WR (1995) Biological basis of germline mutation - comparisons of spontaneous germline mutation-rates among Drosophila, mouse, and human. Environ Mol Mutagen 25: 48-64.
    • (1995) Environ Mol Mutagen , vol.25 , pp. 48-64
    • Drost, J.B.1    Lee, W.R.2
  • 34
    • 39349105943 scopus 로고    scopus 로고
    • A mouse model of mitochondrial disease reveals germline selection against severe mtDNA mutations
    • Fan W, Waymire KG, Narula N, Li P, Rocher C, Coskun X, et al. (2008) A mouse model of mitochondrial disease reveals germline selection against severe mtDNA mutations. Science 319: 958-962.
    • (2008) Science , vol.319 , pp. 958-962
    • Fan, W.1    Waymire, K.G.2    Narula, N.3    Li, P.4    Rocher, C.5    Coskun, X.6
  • 35
    • 38949091096 scopus 로고    scopus 로고
    • Strong purifying selection in transmission of mammalian mitochondrial DNA
    • doi:10.1371/journal.pbio.0060010
    • Stewart JB, Freyer C, Elson JL, Wredenberg A, Cansu Z, et al. (2008) Strong purifying selection in transmission of mammalian mitochondrial DNA. PLoS Biol 6: e10. doi:10.1371/journal.pbio.0060010
    • (2008) PLoS Biol , vol.6
    • Stewart, J.B.1    Freyer, C.2    Elson, J.L.3    Wredenberg, A.4    Cansu, Z.5
  • 36
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4    Bader, J.S.5
  • 37
    • 34249723655 scopus 로고    scopus 로고
    • Advanced sequencing technologies and their wider impact in microbiology
    • Hall N (2007) Advanced sequencing technologies and their wider impact in microbiology. J Exp Biol 209: 1518-1525.
    • (2007) J Exp Biol , vol.209 , pp. 1518-1525
    • Hall, N.1
  • 38
    • 0030008572 scopus 로고    scopus 로고
    • Spontaneous mutational variances and covariances for fitness-related traits in Drosophila melanogaster
    • Fernandez J, López-Fanjul C (1996) Spontaneous mutational variances and covariances for fitness-related traits in Drosophila melanogaster. Genetics 143: 829-837.
    • (1996) Genetics , vol.143 , pp. 829-837
    • Fernandez, J.1    López-Fanjul, C.2
  • 39
    • 1842687155 scopus 로고    scopus 로고
    • Mutation accumulation and the effect of copia insertions in Drosophila melanogaster
    • Houle D, Nuzhdin SV (2004) Mutation accumulation and the effect of copia insertions in Drosophila melanogaster. Genet Res 83: 7-18.
    • (2004) Genet Res , vol.83 , pp. 7-18
    • Houle, D.1    Nuzhdin, S.V.2
  • 40
    • 0025862960 scopus 로고
    • The response to artificial selection from new mutations in Drosophila melanogaster
    • Caballero A, Toro MA, López-Fanjul C (1991). The response to artificial selection from new mutations in Drosophila melanogaster. Genetics 127: 89-102.
    • (1991) Genetics , vol.127 , pp. 89-102
    • Caballero, A.1    Toro, M.A.2    López-Fanjul, C.3
  • 41
    • 0038781878 scopus 로고    scopus 로고
    • Unbiased whole-genome amplification directly from clinical samples
    • Hosono S, Faruqi AF, Dean FB, Du Y, Sun Z, et al. (2003) Unbiased whole-genome amplification directly from clinical samples. Genome Res 13: 954-964.
    • (2003) Genome Res , vol.13 , pp. 954-964
    • Hosono, S.1    Faruqi, A.F.2    Dean3    FB, D.Y.4    Sun, Z.5
  • 42
    • 0032540905 scopus 로고    scopus 로고
    • A sequencing method based on realtime pyrophosphate
    • Ronaghi R, Uhlén M, Nyrén P (1998) A sequencing method based on realtime pyrophosphate. Science 281: 363-365.
    • (1998) Science , vol.281 , pp. 363-365
    • Ronaghi, R.1    Uhlén, M.2    Nyrén, P.3
  • 43
    • 0025009206 scopus 로고
    • Incomplete maternal transmission of mitochondrial DNA in Drosophila
    • Kondo R, Satta Y, Matsuura ET, Ishiwa H, Takahata N, et al. (1990) Incomplete maternal transmission of mitochondrial DNA in Drosophila. Genetics 126: 657-663.
    • (1990) Genetics , vol.126 , pp. 657-663
    • Kondo, R.1    Satta, Y.2    Matsuura, E.T.3    Ishiwa, H.4    Takahata, N.5
  • 44
    • 0026691063 scopus 로고
    • Further observation of paternal transmission of Drosophila mitochondrial DNA by PCR selective amplification method
    • Kondo R, Matsuura ET, Chigusa SI (1992) Further observation of paternal transmission of Drosophila mitochondrial DNA by PCR selective amplification method. Genet Res Camb 59: 81-84.
    • (1992) Genet Res Camb , vol.59 , pp. 81-84
    • Kondo, R.1    Matsuura, E.T.2    Chigusa, S.I.3
  • 47
    • 0000238336 scopus 로고
    • A simplex method for function minimization
    • Nelder JA, Mead R (1965) A simplex method for function minimization. Comput J 7: 308-313.
    • (1965) Comput J , vol.7 , pp. 308-313
    • Nelder, J.A.1    Mead, R.2
  • 48
    • 50249110903 scopus 로고    scopus 로고
    • Press WH, Teukolsky SA, Vetterling WT, Flannery BP (1992) Numerical recipes in C. Second Edition. Cambridge (United Kingdom): Cambridge University Press. 994 p.
    • Press WH, Teukolsky SA, Vetterling WT, Flannery BP (1992) Numerical recipes in C. Second Edition. Cambridge (United Kingdom): Cambridge University Press. 994 p.


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