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Volumn 57, Issue 1, 2003, Pages 182-190

Stochasticity overrules the "three-times rule": Genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial DNA

Author keywords

Coalescence theory; Linked selection; Mitochondrial DNA; Monophyly; Species identification; Three times rule

Indexed keywords

COALESCENCE; EVOLUTION; GENETIC DRIFT; STOCHASTICITY;

EID: 0037286419     PISSN: 00143820     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.0014-3820.2003.tb00229.x     Document Type: Review
Times cited : (300)

References (39)
  • 1
    • 0034708480 scopus 로고    scopus 로고
    • The genome sequence of Drosophila melanogaster
    • Adams, M. D. et al. 2000. The genome sequence of Drosophila melanogaster. Science 287:2185-2195.
    • (2000) Science , vol.287 , pp. 2185-2195
    • Adams, M.D.1
  • 2
    • 0035546073 scopus 로고    scopus 로고
    • Adaptive hitchhiking effects on genome variability
    • Andolfatto, P. 2001. Adaptive hitchhiking effects on genome variability. Curr. Opin. Genet. Dev. 11:635-641.
    • (2001) Curr. Opin. Genet. Dev. , vol.11 , pp. 635-641
    • Andolfatto, P.1
  • 4
    • 0004187047 scopus 로고    scopus 로고
    • Harvard Univ. Press, Cambridge, MA
    • _. 2000. Phylogeography. Harvard Univ. Press, Cambridge, MA.
    • (2000) Phylogeography
  • 5
    • 0033928041 scopus 로고    scopus 로고
    • Comparative genomics of mitochondrial DNA in Drosophila simulans
    • Ballard, J. W. O. 2000. Comparative genomics of mitochondrial DNA in Drosophila simulans. J. Mol. Evol. 51:64-75.
    • (2000) J. Mol. Evol. , vol.51 , pp. 64-75
    • Ballard, J.W.O.1
  • 6
    • 0028046414 scopus 로고
    • Unraveling selection in the mitochondrial genome of Drosophila
    • Ballard, J. W. O., and M. Kreitman. 1994. Unraveling selection in the mitochondrial genome of Drosophila. Genetics 138:757-772.
    • (1994) Genetics , vol.138 , pp. 757-772
    • Ballard, J.W.O.1    Kreitman, M.2
  • 7
    • 0029197095 scopus 로고
    • Is mitochondrial DNA a strictly neutral marker?
    • Ballard, J. W. O., and M. Kreitman. 1995. Is mitochondrial DNA a strictly neutral marker? Trends Ecol. Evol. 10:485-488.
    • (1995) Trends Ecol. Evol. , vol.10 , pp. 485-488
    • Ballard, J.W.O.1    Kreitman, M.2
  • 8
    • 0036219499 scopus 로고    scopus 로고
    • Divergence of mitochondrial DNA is not corroborated by nuclear DNA, morphology, or behavior in Drosophila simulans
    • Ballard, J. W. O., B. Chernoff, and A. C. James. 2002. Divergence of mitochondrial DNA is not corroborated by nuclear DNA, morphology, or behavior in Drosophila simulans. Evolution 56:527-545.
    • (2002) Evolution , vol.56 , pp. 527-545
    • Ballard, J.W.O.1    Chernoff, B.2    James, A.C.3
  • 9
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore, J. L. 1999. Animal mitochondrial genomes. Nucleic. Acids Res. 27:1767-1780.
    • (1999) Nucleic. Acids Res. , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 11
    • 0027305597 scopus 로고
    • The effect of deleterious mutations on neutral molecular variation
    • Charlesworth, B., M. T. Morgan, and D. Charlesworth. 1993. The effect of deleterious mutations on neutral molecular variation. Genetics 134:1289-1303.
    • (1993) Genetics , vol.134 , pp. 1289-1303
    • Charlesworth, B.1    Morgan, M.T.2    Charlesworth, D.3
  • 12
    • 84989466074 scopus 로고
    • Phylogenetic systematics and the species problem
    • de Queiroz, K. and M. J. Donoghue. 1988. Phylogenetic systematics and the species problem. Cladistics 4:317-338.
    • (1988) Cladistics , vol.4 , pp. 317-338
    • De Queiroz, K.1    Donoghue, M.J.2
  • 13
    • 84989460700 scopus 로고
    • Phylogenetic systematics and species revisited
    • _. 1990. Phylogenetic systematics and species revisited. Cladistics 6:83-90.
    • (1990) Cladistics , vol.6 , pp. 83-90
  • 14
    • 0034082076 scopus 로고    scopus 로고
    • Genetic drift in an infinite population: The pseudohitchhiking model
    • Gillespie, J. H. 2000. Genetic drift in an infinite population: the pseudohitchhiking model. Genetics 155:909-919.
    • (2000) Genetics , vol.155 , pp. 909-919
    • Gillespie, J.H.1
  • 15
    • 0035678847 scopus 로고    scopus 로고
    • Is the population size of a species relevant to its evolution?
    • _. 2001. Is the population size of a species relevant to its evolution? Evolution 55:2161-2169.
    • Evolution , vol.55 , pp. 2161-2169
  • 16
    • 0018784753 scopus 로고
    • Are evolutionary rates really variable?
    • Gillespie, J. H., and C. H. Langley. 1979. Are evolutionary rates really variable? J. Mol. Evol. 10:27-34.
    • (1979) J. Mol. Evol. , vol.10 , pp. 27-34
    • Gillespie, J.H.1    Langley, C.H.2
  • 17
    • 0035576285 scopus 로고    scopus 로고
    • Prospects for nuclear gene phylogeography
    • Hare, M. P. 2001. Prospects for nuclear gene phylogeography. Trends Ecol. Evol. 16:700-706.
    • (2001) Trends Ecol. Evol. , vol.16 , pp. 700-706
    • Hare, M.P.1
  • 18
    • 0002821517 scopus 로고    scopus 로고
    • Linking evolutionary pattern and process
    • D. J. Howard and S. H. Berlocher, eds. Oxford Univ. Press., Oxford, U.K.
    • Harrison, R. G. 1998. Linking evolutionary pattern and process. Pp. 19-31 in D. J. Howard and S. H. Berlocher, eds. Endless forms: species and speciation. Oxford Univ. Press., Oxford, U.K.
    • (1998) Endless Forms: Species and Speciation , pp. 19-31
    • Harrison, R.G.1
  • 19
    • 0002013656 scopus 로고    scopus 로고
    • Cytoplasmic incompatibility in insects
    • S. L. O'Neill, J. H. Werren, and A. A. Hoffmann, eds. Oxford Univ. Press, Oxford, U.K
    • Hoffmann, A. A., and M. Turelli. 1997. Cytoplasmic incompatibility in insects. Pp. 42-80 in S. L. O'Neill, J. H. Werren, and A. A. Hoffmann, eds. Influential passengers: inherited microorganisms and arthropod reproduction, Oxford Univ. Press, Oxford, U.K.
    • (1997) Influential Passengers: Inherited Microorganisms and Arthropod Reproduction , pp. 42-80
    • Hoffmann, A.A.1    Turelli, M.2
  • 20
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • Hudson, R. R. 1990. Gene genealogies and the coalescent process. Oxf. Surv. Evol. Biol. 7:1-44.
    • (1990) Oxf. Surv. Evol. Biol. , vol.7 , pp. 1-44
    • Hudson, R.R.1
  • 21
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • Hudson, R. R., M. Kreitman, and M. Aguadé. 1987. A test of neutral molecular evolution based on nucleotide data. Genetics 116:153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguadé, M.3
  • 22
    • 0024372736 scopus 로고
    • The hitchhiking effect revisited
    • Kaplan, N. L., R. R. Hudson, and C. H. Langley. 1989. The hitchhiking effect revisited. Genetics 123:887-899.
    • (1989) Genetics , vol.123 , pp. 887-899
    • Kaplan, N.L.1    Hudson, R.R.2    Langley, C.H.3
  • 23
    • 0031694215 scopus 로고    scopus 로고
    • Deleterious mutations at the mitochondrial ND3 gene in South American marsh rats (Holochilus)
    • Kennedy, P., and N. W. Nachman. 1998. Deleterious mutations at the mitochondrial ND3 gene in South American marsh rats (Holochilus). Genetics 150:359-368.
    • (1998) Genetics , vol.150 , pp. 359-368
    • Kennedy, P.1    Nachman, N.W.2
  • 24
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison, W. P. 1997. Gene trees in species trees. Syst. Biol. 46:523-536.
    • (1997) Syst. Biol. , vol.46 , pp. 523-536
    • Maddison, W.P.1
  • 25
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favorable gene
    • Maynard Smith, J., and J. Haigh. 1974. The hitch-hiking effect of a favorable gene. Genet. Res. Camb. 23:23-35.
    • (1974) Genet. Res. Camb. , vol.23 , pp. 23-35
    • Maynard Smith, J.1    Haigh, J.2
  • 26
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald, J. H., and M. Kreitman. 1991. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351:652-654.
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 27
    • 7344225509 scopus 로고    scopus 로고
    • Deleterious mutations in animal mitochondrial DNA
    • Nachman, M. W. 1998. Deleterious mutations in animal mitochondrial DNA. Genetica 102/103:61-69.
    • (1998) Genetica , vol.102-103 , pp. 61-69
    • Nachman, M.W.1
  • 28
    • 0031695493 scopus 로고    scopus 로고
    • Species identification using genetic tools: The value of nuclear and mitochondrial gene sequences in whale conservation
    • Palumbi, S. R., and F. Cipriano. 1998. Species identification using genetic tools: The value of nuclear and mitochondrial gene sequences in whale conservation. J. Hered. 89:459-464.
    • (1998) J. Hered. , vol.89 , pp. 459-464
    • Palumbi, S.R.1    Cipriano, F.2
  • 29
    • 0034978958 scopus 로고    scopus 로고
    • Predicting nuclear gene coalescence from mitochondrial DNA data: The three-times rule
    • Palumbi, S. R., F. Cipriano, and M. P. Hare. 2001. Predicting nuclear gene coalescence from mitochondrial DNA data: the three-times rule. Evolution 55:859-868.
    • (2001) Evolution , vol.55 , pp. 859-868
    • Palumbi, S.R.1    Cipriano, F.2    Hare, M.P.3
  • 30
    • 0034805297 scopus 로고    scopus 로고
    • Sexually antagonistic cytonuclear fitness interactions in Drosophila melanogaster
    • Rand, D. M., A. G. Clark, and L. M. Kann. 2001. Sexually antagonistic cytonuclear fitness interactions in Drosophila melanogaster. Genetics 159:173-187.
    • (2001) Genetics , vol.159 , pp. 173-187
    • Rand, D.M.1    Clark, A.G.2    Kann, L.M.3
  • 31
    • 0029099781 scopus 로고
    • Properties of statistical tests of neutrality
    • Simonsen, K. L., G. A. Churchill, and C. F. Aquadro. 1995. Properties of statistical tests of neutrality. Genetics 141:413-429.
    • (1995) Genetics , vol.141 , pp. 413-429
    • Simonsen, K.L.1    Churchill, G.A.2    Aquadro, C.F.3
  • 32
    • 0025951996 scopus 로고
    • Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations
    • Slatkin, M. and R. R. Hudson. 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129:555-562.
    • (1991) Genetics , vol.129 , pp. 555-562
    • Slatkin, M.1    Hudson, R.R.2
  • 33
    • 0001615347 scopus 로고
    • Average number of nucleotide differences in a sample from a single subpopulation: A test for population subdivision
    • Strobeck, C. 1987. Average number of nucleotide differences in a sample from a single subpopulation: a test for population subdivision. Genetics 117:149-153.
    • (1987) Genetics , vol.117 , pp. 149-153
    • Strobeck, C.1
  • 34
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima, F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 35
    • 0024313579 scopus 로고    scopus 로고
    • Statistical method for testing neutral mutation hypothesis by DNA polymorphism
    • _. 1989. Statistical method for testing neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
    • Genetics , vol.123 , pp. 585-595
  • 37
    • 0021514720 scopus 로고
    • Line-of-descent and genealogical processes, and their applications in population genetics models
    • Tavaré, S. 1984. Line-of-descent and genealogical processes, and their applications in population genetics models. Theor. Popul. Biol. 26:119-164.
    • (1984) Theor. Popul. Biol. , vol.26 , pp. 119-164
    • Tavaré, S.1
  • 38
    • 0026737744 scopus 로고
    • Dynamics of cytoplasmic incompatibility and mtDNA variation in natural Drosophila simulans populations
    • Turelli, M., A. A. Hoffmann, and S. W. McKechnie. 1992. Dynamics of cytoplasmic incompatibility and mtDNA variation in natural Drosophila simulans populations. Genetics 132:713-723.
    • (1992) Genetics , vol.132 , pp. 713-723
    • Turelli, M.1    Hoffmann, A.A.2    McKechnie, S.W.3
  • 39
    • 0033824906 scopus 로고    scopus 로고
    • Contrasting patterns of nonneutral evolution in proteins encoded in nuclear and mitochondrial genomes
    • Weinreich, D. M., and D. M. Rand. 2000. Contrasting patterns of nonneutral evolution in proteins encoded in nuclear and mitochondrial genomes. Genetics 156:385-399.
    • (2000) Genetics , vol.156 , pp. 385-399
    • Weinreich, D.M.1    Rand, D.M.2


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