-
1
-
-
0036384211
-
Structural bases of stability-function tradeoffs in enzymes
-
Beadle, B. M., and B. K. Shoichet. 2002. Structural bases of stability-function tradeoffs in enzymes. J. Mol. Biol. 321:285-296.
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 285-296
-
-
Beadle, B.M.1
Shoichet, B.K.2
-
2
-
-
59049088893
-
Optimization of gene expression by natural selection
-
Bedford, T., and D. L. Hartl. 2009. Optimization of gene expression by natural selection. Proc. Natl. Acad. Sci. USA 106:1133-1138.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 1133-1138
-
-
Bedford, T.1
Hartl, D.L.2
-
3
-
-
34547418221
-
An experimental test of evolutionary tradeoffs during temperature adaptation
-
Bennett, A. F., and R. E. Lenski. 2007. An experimental test of evolutionary tradeoffs during temperature adaptation. Proc. Natl. Acad. Sci. USA 104(Suppl 1):8649-8654.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, Issue.SUPPL. 1
, pp. 8649-8654
-
-
Bennett, A.F.1
Lenski, R.E.2
-
4
-
-
33645811495
-
Protein stability promotes evolvability
-
Bloom, J. D., S. T. Labthavikul, C. R. Otey, and F. H. Arnold. 2006. Protein stability promotes evolvability. Proc. Natl. Acad. Sci. USA 103:5869-5874.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 5869-5874
-
-
Bloom, J.D.1
Labthavikul, S.T.2
Otey, C.R.3
Arnold, F.H.4
-
5
-
-
84876838057
-
Evolution after introduction of a novel metabolic pathway consistently leads to restoration of wild-type physiology
-
Carroll, S. M., and C. J. Marx. 2013. Evolution after introduction of a novel metabolic pathway consistently leads to restoration of wild-type physiology. PLoS Genet. 9:e1003427.
-
(2013)
PLoS Genet.
, vol.9
-
-
Carroll, S.M.1
Marx, C.J.2
-
7
-
-
0032479058
-
C1 transfer enzymes and coenzymes linking methylotrophic bacteria and methanogenic Archaea
-
Chistoserdova, L., J. A. Vorholt, R. K. Thauer, and M. E. Lidstrom. 1998. C1 transfer enzymes and coenzymes linking methylotrophic bacteria and methanogenic Archaea. Science 281:99-102.
-
(1998)
Science
, vol.281
, pp. 99-102
-
-
Chistoserdova, L.1
Vorholt, J.A.2
Thauer, R.K.3
Lidstrom, M.E.4
-
8
-
-
0037967152
-
Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view
-
Chistoserdova, L., S.-W. Chen, A. Lapidus, and M. E. Lidstrom. 2003. Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view. J. Bacteriol. 185:2980-2987.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 2980-2987
-
-
Chistoserdova, L.1
Chen, S.-W.2
Lapidus, A.3
Lidstrom, M.E.4
-
9
-
-
3042548836
-
The enigmatic planctomycetes may hold a key to the origins of methanogenesis and methylotrophy
-
Chistoserdova, L., C. Jenkins, M. G. Kalyuzhnaya, C. J. Marx, A. Lapidus, J. A. Vorholt, J. T. Staley, and M. E. Lidstrom. 2004a. The enigmatic planctomycetes may hold a key to the origins of methanogenesis and methylotrophy. Mol. Biol. Evol. 21:1234-1241.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1234-1241
-
-
Chistoserdova, L.1
Jenkins, C.2
Kalyuzhnaya, M.G.3
Marx, C.J.4
Lapidus, A.5
Vorholt, J.A.6
Staley, J.T.7
Lidstrom, M.E.8
-
10
-
-
0346361864
-
Multiple formate dehydrogenase enzymes in the facultative methylotroph Methylobacterium extorquens AM1 are dispensable for growth on methanol
-
Chistoserdova, L., M. Laukel, J.-C. Portais, J. A. Vorholt, and M. E. Lidstrom. 2004b. Multiple formate dehydrogenase enzymes in the facultative methylotroph Methylobacterium extorquens AM1 are dispensable for growth on methanol. J. Bacteriol. 186:22-28.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 22-28
-
-
Chistoserdova, L.1
Laukel, M.2
Portais, J.-C.3
Vorholt, J.A.4
Lidstrom, M.E.5
-
11
-
-
37449013879
-
Identification of a fourth formate dehydrogenase in Methylobacterium extorquens AM1 and confirmation of the essential role of formate oxidation in methylotrophy
-
Chistoserdova, L., G. J. Crowther, J. A. Vorholt, E. Skovran, J.-C. Portais, and M. E. Lidstrom. 2007. Identification of a fourth formate dehydrogenase in Methylobacterium extorquens AM1 and confirmation of the essential role of formate oxidation in methylotrophy. J. Bacteriol. 189:9076-9081.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 9076-9081
-
-
Chistoserdova, L.1
Crowther, G.J.2
Vorholt, J.A.3
Skovran, E.4
Portais, J.-C.5
Lidstrom, M.E.6
-
12
-
-
84861135633
-
Optimization of gene expression through divergent mutational paths
-
Chou, H.-H., and C. J. Marx. 2012. Optimization of gene expression through divergent mutational paths. Cell Rep. 1:133-140.
-
(2012)
Cell Rep.
, vol.1
, pp. 133-140
-
-
Chou, H.-H.1
Marx, C.J.2
-
13
-
-
70349690200
-
Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation
-
Chou, H.-H., J. Berthet, and C. J. Marx. 2009. Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation. PLoS Genet. 5:e1000652.
-
(2009)
PLoS Genet.
, vol.5
-
-
Chou, H.-H.1
Berthet, J.2
Marx, C.J.3
-
14
-
-
79957958115
-
Diminishing returns epistasis among beneficial mutations decelerates adaptation
-
Chou, H.-H., H.-C. Chiu, N. F. Delaney, D. Segrè, and C. J. Marx. 2011. Diminishing returns epistasis among beneficial mutations decelerates adaptation. Science 332:1190-1192.
-
(2011)
Science
, vol.332
, pp. 1190-1192
-
-
Chou, H.-H.1
Chiu, H.-C.2
Delaney, N.F.3
Segrè, D.4
Marx, C.J.5
-
15
-
-
84877073280
-
A novel pair of inducible expression vectors for use in Methylobacterium extorquens
-
Chubiz, L. M., J. Purswani, S. M. Carroll, and C. J. Marx. 2013. A novel pair of inducible expression vectors for use in Methylobacterium extorquens. BMC Res. Notes 6:183.
-
(2013)
BMC Res. Notes
, vol.6
, pp. 183
-
-
Chubiz, L.M.1
Purswani, J.2
Carroll, S.M.3
Marx, C.J.4
-
16
-
-
79960104605
-
Microbial laboratory evolution in the era of genome-scale science
-
Conrad, T. M., N. E. Lewis, and B. Ø. Palsson. 2011. Microbial laboratory evolution in the era of genome-scale science. Mol. Syst. Biol. 7:509.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 509
-
-
Conrad, T.M.1
Lewis, N.E.2
Palsson, B.O.3
-
17
-
-
40149109210
-
Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli
-
Cooper, T. F., S. K. Remold, R. E. Lenski, and D. Schneider. 2008. Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli. PLoS Genet. 4:e35.
-
(2008)
PLoS Genet.
, vol.4
-
-
Cooper, T.F.1
Remold, S.K.2
Lenski, R.E.3
Schneider, D.4
-
18
-
-
0034641929
-
The population genetics of ecological specialization in evolving Escherichia coli populations
-
Cooper, V. S., and R. E. Lenski. 2000. The population genetics of ecological specialization in evolving Escherichia coli populations. Nature 407:736-739.
-
(2000)
Nature
, vol.407
, pp. 736-739
-
-
Cooper, V.S.1
Lenski, R.E.2
-
19
-
-
47249109471
-
Formate as the main branch point for methylotrophic metabolism in Methylobacterium extorquens AM1
-
Crowther, G. J., G. Kosály, and M. E. Lidstrom. 2008. Formate as the main branch point for methylotrophic metabolism in Methylobacterium extorquens AM1. J. Bacteriol. 190:5057-5062.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 5057-5062
-
-
Crowther, G.J.1
Kosály, G.2
Lidstrom, M.E.3
-
20
-
-
84878305954
-
Clarity: an open-source manager for laboratory automation
-
Delaney, N. F., J. I. Rojas Echenique, and C. J. Marx. 2013a. Clarity: an open-source manager for laboratory automation. J. Lab. Autom. 18:171-177.
-
(2013)
J. Lab. Autom.
, vol.18
, pp. 171-177
-
-
Delaney, N.F.1
Rojas Echenique, J.I.2
Marx, C.J.3
-
21
-
-
84876965085
-
Development of an optimized medium, strain and high-throughput culturing methods for Methylobacterium extorquens
-
Delaney, N. F., M. E. Kaczmarek, L. M. Ward, P. K. Swanson, M.-C. Lee, and C. J. Marx. 2013b. Development of an optimized medium, strain and high-throughput culturing methods for Methylobacterium extorquens. PLoS One 8:e62957.
-
(2013)
PLoS One
, vol.8
-
-
Delaney, N.F.1
Kaczmarek, M.E.2
Ward, L.M.3
Swanson, P.K.4
Lee, M.-C.5
Marx, C.J.6
-
22
-
-
0038441327
-
Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation
-
Elena, S. F., and R. E. Lenski. 2003. Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet. 4:457-469.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 457-469
-
-
Elena, S.F.1
Lenski, R.E.2
-
23
-
-
49649114605
-
Protein structure modeling with MODELLER
-
Eswar, N., D. Eramian, B. Webb, M.-Y. Shen, and A. Sali. 2008. Protein structure modeling with MODELLER. Methods Mol. Biol. 426:145-159.
-
(2008)
Methods Mol. Biol.
, vol.426
, pp. 145-159
-
-
Eswar, N.1
Eramian, D.2
Webb, B.3
Shen, M.-Y.4
Sali, A.5
-
24
-
-
0000527903
-
Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans
-
Figurski, D. H., and D. R. Helinski. 1979. Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc. Natl. Acad. Sci. USA 76:1648-1652.
-
(1979)
Proc. Natl. Acad. Sci. USA
, vol.76
, pp. 1648-1652
-
-
Figurski, D.H.1
Helinski, D.R.2
-
25
-
-
84876850007
-
The environment affects epistatic interactions to alter the topology of an empirical fitness landscape
-
Flynn, K. M., T. F. Cooper, F. B.-G. Moore, and V. S. Cooper. 2013. The environment affects epistatic interactions to alter the topology of an empirical fitness landscape. PLoS Genet. 9:e1003426.
-
(2013)
PLoS Genet.
, vol.9
-
-
Flynn, K.M.1
Cooper, T.F.2
Moore, F.B.-G.3
Cooper, V.S.4
-
26
-
-
1642388599
-
Experimental evidence for sympatric ecological diversification due to frequency-dependent competition in Escherichia coli
-
Friesen, M. L., G. Saxer, M. Travisano, and M. Doebeli. 2004. Experimental evidence for sympatric ecological diversification due to frequency-dependent competition in Escherichia coli. Evolution 58:245-260.
-
(2004)
Evolution
, vol.58
, pp. 245-260
-
-
Friesen, M.L.1
Saxer, G.2
Travisano, M.3
Doebeli, M.4
-
27
-
-
0024187005
-
The evolution of ecological specialization
-
Futuyma, D. J., and G. Moreno. 1988. The evolution of ecological specialization. Annu. Rev. Ecol. Syst. 19:207-233.
-
(1988)
Annu. Rev. Ecol. Syst.
, vol.19
, pp. 207-233
-
-
Futuyma, D.J.1
Moreno, G.2
-
28
-
-
2542583245
-
The fate of competing beneficial mutations in an asexual population
-
Gerrish, P. J., and R. E. Lenski. 1998. The fate of competing beneficial mutations in an asexual population. Genetica 102-103:127-144.
-
(1998)
Genetica
, vol.102-103
, pp. 127-144
-
-
Gerrish, P.J.1
Lenski, R.E.2
-
29
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Gibson, D. G., L. Young, R.-Y. Chuang, J. C. Venter, C. A. Hutchison, and H. O. Smith. 2009. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat. Methods 6:343-345.
-
(2009)
Nat. Methods
, vol.6
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.-Y.3
Venter, J.C.4
Hutchison, C.A.5
Smith, H.O.6
-
30
-
-
27144457373
-
QscR-mediated transcriptional activation of serine cycle genes in Methylobacterium extorquens AM1
-
Kalyuzhnaya, M. G., and M. E. Lidstrom. 2005. QscR-mediated transcriptional activation of serine cycle genes in Methylobacterium extorquens AM1. J. Bacteriol. 187:7511-7517.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 7511-7517
-
-
Kalyuzhnaya, M.G.1
Lidstrom, M.E.2
-
31
-
-
0036218182
-
The experimental evolution of specialists, generalists, and the maintenance of diversity
-
Kassen, R. 2002. The experimental evolution of specialists, generalists, and the maintenance of diversity. J. Evol. Biol. 15:173-190.
-
(2002)
J. Evol. Biol.
, vol.15
, pp. 173-190
-
-
Kassen, R.1
-
32
-
-
79955590028
-
Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape
-
Kvitek, D. J., and G. Sherlock. 2011. Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape. PLoS Genet. 7:e1002056.
-
(2011)
PLoS Genet.
, vol.7
-
-
Kvitek, D.J.1
Sherlock, G.2
-
33
-
-
65249100208
-
The cost of gene expression underlies a fitness tradeoff in yeast
-
Lang, G., A. Murray, and D. Botstein. 2009. The cost of gene expression underlies a fitness tradeoff in yeast. Proc. Natl. Acad. Sci. USA 106:5755-5760.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 5755-5760
-
-
Lang, G.1
Murray, A.2
Botstein, D.3
-
34
-
-
0037240872
-
The tungsten-containing formate dehydrogenase from Methylobacterium extorquens AM1: purification and properties
-
Laukel, M., L. Chistoserdova, M. E. Lidstrom, and J. A. Vorholt. 2003. The tungsten-containing formate dehydrogenase from Methylobacterium extorquens AM1: purification and properties. Eur. J. Biochem. 270:325-333.
-
(2003)
Eur. J. Biochem.
, vol.270
, pp. 325-333
-
-
Laukel, M.1
Chistoserdova, L.2
Lidstrom, M.E.3
Vorholt, J.A.4
-
35
-
-
84863668598
-
Repeated, selection-driven genome reduction of accessory genes in experimental populations
-
Lee, M.-C., and C. J. Marx. 2012. Repeated, selection-driven genome reduction of accessory genes in experimental populations. PLoS Genet. 8:e1002651.
-
(2012)
PLoS Genet.
, vol.8
-
-
Lee, M.-C.1
Marx, C.J.2
-
36
-
-
70349674312
-
Asymmetric, bimodal tradeoffs during adaptation of Methylobacterium to distinct growth substrates
-
Lee, M.-C., H.-H. Chou, and C. J. Marx. 2009. Asymmetric, bimodal tradeoffs during adaptation of Methylobacterium to distinct growth substrates. Evolution 63:2816-2830.
-
(2009)
Evolution
, vol.63
, pp. 2816-2830
-
-
Lee, M.-C.1
Chou, H.-H.2
Marx, C.J.3
-
37
-
-
84865287298
-
Multiple long-term, experimentally-evolved populations of Escherichia coli acquire dependence upon citrate as an iron chelator for optimal growth on glucose
-
Leiby, N., W. R. Harcombe, and C. J. Marx. 2012. Multiple long-term, experimentally-evolved populations of Escherichia coli acquire dependence upon citrate as an iron chelator for optimal growth on glucose. BMC Evol. Biol. 12:151.
-
(2012)
BMC Evol. Biol.
, vol.12
, pp. 151
-
-
Leiby, N.1
Harcombe, W.R.2
Marx, C.J.3
-
38
-
-
84874346133
-
Evolutionary rescue from extinction is contingent on a lower rate of environmental change
-
Lindsey, H. A., J. Gallie, S. Taylor, and B. Kerr. 2013. Evolutionary rescue from extinction is contingent on a lower rate of environmental change. Nature 494:463-467.
-
(2013)
Nature
, vol.494
, pp. 463-467
-
-
Lindsey, H.A.1
Gallie, J.2
Taylor, S.3
Kerr, B.4
-
39
-
-
2542635754
-
The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens
-
Maclean, R. C., G. Bell, and P. B. Rainey. 2004. The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens. Proc. Natl. Acad. Sci. USA 101:8072-8077.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8072-8077
-
-
Maclean, R.C.1
Bell, G.2
Rainey, P.B.3
-
40
-
-
84861930803
-
The multiplicity of divergence mechanisms in a single evolving population
-
Maharjan, R. P., T. Ferenci, P. R. Reeves, Y. Li, B. Liu, and L. Wang. 2012. The multiplicity of divergence mechanisms in a single evolving population. Genome Biol. 13:R41.
-
(2012)
Genome Biol.
, vol.13
-
-
Maharjan, R.P.1
Ferenci, T.2
Reeves, P.R.3
Li, Y.4
Liu, B.5
Wang, L.6
-
41
-
-
84871082477
-
The basis of antagonistic pleiotropy in hfq mutations that have opposite effects on fitness at slow and fast growth rates
-
Maharjan, R., C. McKenzie, A. Yeung, and T. Ferenci. 2013. The basis of antagonistic pleiotropy in hfq mutations that have opposite effects on fitness at slow and fast growth rates. Heredity 110:10-18.
-
(2013)
Heredity
, vol.110
, pp. 10-18
-
-
Maharjan, R.1
McKenzie, C.2
Yeung, A.3
Ferenci, T.4
-
42
-
-
58849089274
-
Development of a broad-host-range sacB-based vector for unmarked allelic exchange
-
Marx, C. J. 2008. Development of a broad-host-range sacB-based vector for unmarked allelic exchange. BMC Res. Notes 1:1.
-
(2008)
BMC Res. Notes
, vol.1
, pp. 1
-
-
Marx, C.J.1
-
43
-
-
84863202796
-
Recovering from a bad start: rapid adaptation and tradeoffs to growth below a threshold density
-
Marx, C. J. 2012. Recovering from a bad start: rapid adaptation and tradeoffs to growth below a threshold density. BMC Evol. Biol. 12:109.
-
(2012)
BMC Evol. Biol.
, vol.12
, pp. 109
-
-
Marx, C.J.1
-
44
-
-
0036841380
-
Broad-host-range cre-lox system for antibiotic marker recycling in gram-negative bacteria
-
Marx, C. J., and M. E. Lidstrom. 2002. Broad-host-range cre-lox system for antibiotic marker recycling in gram-negative bacteria. Biotechniques 33:1062-1067.
-
(2002)
Biotechniques
, vol.33
, pp. 1062-1067
-
-
Marx, C.J.1
Lidstrom, M.E.2
-
45
-
-
1642555532
-
Development of an insertional expression vector system for Methylobacterium extorquens AM1 and generation of null mutants lacking mtdA and/or fch
-
Marx, C. J., and M. E. Lidstrom. 2004. Development of an insertional expression vector system for Methylobacterium extorquens AM1 and generation of null mutants lacking mtdA and/or fch. Microbiology 150:9-19.
-
(2004)
Microbiology
, vol.150
, pp. 9-19
-
-
Marx, C.J.1
Lidstrom, M.E.2
-
46
-
-
0345097575
-
Formaldehyde-detoxifying role of the tetrahydromethanopterin-linked pathway in Methylobacterium extorquens AM1
-
Marx, C. J., L. Chistoserdova, and M. E. Lidstrom. 2003a. Formaldehyde-detoxifying role of the tetrahydromethanopterin-linked pathway in Methylobacterium extorquens AM1. J. Bacteriol. 185:7160-7168.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 7160-7168
-
-
Marx, C.J.1
Chistoserdova, L.2
Lidstrom, M.E.3
-
47
-
-
0344235395
-
Purification of the formate-tetrahydrofolate ligase from Methylobacterium extorquens AM1 and demonstration of its requirement for methylotrophic growth
-
Marx, C. J., M. Laukel, J. A. Vorholt, and M. E. Lidstrom. 2003b. Purification of the formate-tetrahydrofolate ligase from Methylobacterium extorquens AM1 and demonstration of its requirement for methylotrophic growth. J. Bacteriol. 185:7169-7175.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 7169-7175
-
-
Marx, C.J.1
Laukel, M.2
Vorholt, J.A.3
Lidstrom, M.E.4
-
48
-
-
14544294928
-
Flux analysis uncovers key role of functional redundancy in formaldehyde metabolism
-
Marx, C. J., S. J. Van Dien, and M. E. Lidstrom. 2005. Flux analysis uncovers key role of functional redundancy in formaldehyde metabolism. PLoS Biol. 3:e16.
-
(2005)
PLoS Biol.
, vol.3
-
-
Marx, C.J.1
Van Dien, S.J.2
Lidstrom, M.E.3
-
49
-
-
77955699550
-
Experimental evolution of adenylate kinase reveals contrasting strategies toward protein thermostability
-
Miller, C., M. Davlieva, C. Wilson, K. I. White, R. Couñago, G. Wu, J. C. Myers, P. Wittung-Stafshede, and Y. Shamoo. 2010. Experimental evolution of adenylate kinase reveals contrasting strategies toward protein thermostability. Biophys. J. 99:887-896.
-
(2010)
Biophys. J.
, vol.99
, pp. 887-896
-
-
Miller, C.1
Davlieva, M.2
Wilson, C.3
White, K.I.4
Couñago, R.5
Wu, G.6
Myers, J.C.7
Wittung-Stafshede, P.8
Shamoo, Y.9
-
50
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
Ochman, H., J. G. Lawrence, and E. A. Groisman. 2000. Lateral gene transfer and the nature of bacterial innovation. Nature 405:299-304.
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Groisman, E.A.3
-
51
-
-
33646117509
-
Laboratory-dependent bacterial ecology: a cautionary tale
-
O'Keefe, K. J., N. M. Morales, H. Ernstberger, G. Benoit, and P. E. Turner. 2006. Laboratory-dependent bacterial ecology: a cautionary tale. Appl. Environ. Microbiol. 72:3032-3035.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 3032-3035
-
-
O'Keefe, K.J.1
Morales, N.M.2
Ernstberger, H.3
Benoit, G.4
Turner, P.E.5
-
52
-
-
0001031422
-
1 compounds. 1. Isolation and characterization of Pseudomonas AM1
-
1 compounds. 1. Isolation and characterization of Pseudomonas AM1. Biochem. J. 81:465.
-
(1961)
Biochem. J.
, vol.81
, pp. 465
-
-
Peel, D.1
Quayle, J.R.2
-
53
-
-
80755159333
-
Genome-scale reconstruction and system level investigation of the metabolic network of Methylobacterium extorquens AM1
-
Peyraud, R., K. Schneider, P. Kiefer, S. Massou, J. A. Vorholt, and J.-C. Portais. 2011. Genome-scale reconstruction and system level investigation of the metabolic network of Methylobacterium extorquens AM1. BMC Syst. Biol. 5:189.
-
(2011)
BMC Syst. Biol.
, vol.5
, pp. 189
-
-
Peyraud, R.1
Schneider, K.2
Kiefer, P.3
Massou, S.4
Vorholt, J.A.5
Portais, J.-C.6
-
55
-
-
0032474853
-
Adaptive radiation in a heterogeneous environment
-
Rainey, P. B., and M. Travisano. 1998 Adaptive radiation in a heterogeneous environment. Nature 394:69-72.
-
(1998)
Nature
, vol.394
, pp. 69-72
-
-
Rainey, P.B.1
Travisano, M.2
-
56
-
-
13144268590
-
Microeconomic principles explain an optimal genome size in bacteria
-
Ranea, J. A. G., A. Grant, J. M. Thornton, and C. A. Orengo. 2005. Microeconomic principles explain an optimal genome size in bacteria. Trends Genet. 21:21-25.
-
(2005)
Trends Genet.
, vol.21
, pp. 21-25
-
-
Ranea, J.A.G.1
Grant, A.2
Thornton, J.M.3
Orengo, C.A.4
-
57
-
-
84869139621
-
Understanding specialism when the jack of all trades can be the master of all
-
Remold, S. 2012. Understanding specialism when the jack of all trades can be the master of all. Proc. R. Soc. Lond. B 279:4861-4869.
-
(2012)
Proc. R. Soc. Lond. B
, vol.279
, pp. 4861-4869
-
-
Remold, S.1
-
58
-
-
1842483226
-
Pervasive joint influence of epistasis and plasticity on mutational effects in Escherichia coli
-
Remold, S. K., and R. E. Lenski. 2004. Pervasive joint influence of epistasis and plasticity on mutational effects in Escherichia coli. Nat. Genet. 36:423-426.
-
(2004)
Nat. Genet.
, vol.36
, pp. 423-426
-
-
Remold, S.K.1
Lenski, R.E.2
-
59
-
-
0028094645
-
Microbial evolution in a simple unstructured environment: genetic differentiation in Escherichia coli
-
Rosenzweig, R. F., R. R. Sharp, D. S. Treves, and J. Adams. 1994. Microbial evolution in a simple unstructured environment: genetic differentiation in Escherichia coli. Genetics 137:903-917.
-
(1994)
Genetics
, vol.137
, pp. 903-917
-
-
Rosenzweig, R.F.1
Sharp, R.R.2
Treves, D.S.3
Adams, J.4
-
60
-
-
0034104460
-
Long-term experimental evolution in Escherichia coli. VIII. Dynamics of a balanced polymorphism
-
Rozen, D., and R. Lenski. 2000. Long-term experimental evolution in Escherichia coli. VIII. Dynamics of a balanced polymorphism. Am. Nat. 155:24-35.
-
(2000)
Am. Nat.
, vol.155
, pp. 24-35
-
-
Rozen, D.1
Lenski, R.2
-
61
-
-
0015836680
-
The metabolism of lactate and pyruvate by Pseudomonas AM1
-
Salem, A. R., C. Wagner, A. J. Hacking, and J. R. Quayle. 1973. The metabolism of lactate and pyruvate by Pseudomonas AM1. J. Gen. Microbiol. 76:375-388.
-
(1973)
J. Gen. Microbiol.
, vol.76
, pp. 375-388
-
-
Salem, A.R.1
Wagner, C.2
Hacking, A.J.3
Quayle, J.R.4
-
62
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali, A., and T. L. Blundell. 1993. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 234:779-815.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
64
-
-
78649640089
-
A systems biology approach uncovers cellular strategies used by Methylobacterium extorquens AM1 during the switch from multi- to single-carbon growth
-
Skovran, E., G. J. Crowther, X. Guo, S. Yang, and M. E. Lidstrom. 2010. A systems biology approach uncovers cellular strategies used by Methylobacterium extorquens AM1 during the switch from multi- to single-carbon growth. PLoS One 5:e14091.
-
(2010)
PLoS One
, vol.5
-
-
Skovran, E.1
Crowther, G.J.2
Guo, X.3
Yang, S.4
Lidstrom, M.E.5
-
65
-
-
45149128433
-
The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products
-
Stoebel, D. M., A. M. Dean, and D. E. Dykhuizen. 2008. The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products. Genetics 178:1653-1660.
-
(2008)
Genetics
, vol.178
, pp. 1653-1660
-
-
Stoebel, D.M.1
Dean, A.M.2
Dykhuizen, D.E.3
-
66
-
-
0017285746
-
A biochemical basis for obligate methylotrophy: properties of a mutant of Pseudomonas AM1 lacking 2-oxoglutarate dehydrogenase
-
Taylor, I. J., and C. Anthony. 1976. A biochemical basis for obligate methylotrophy: properties of a mutant of Pseudomonas AM1 lacking 2-oxoglutarate dehydrogenase. J. Gen. Microbiol. 93:259-265.
-
(1976)
J. Gen. Microbiol.
, vol.93
, pp. 259-265
-
-
Taylor, I.J.1
Anthony, C.2
-
67
-
-
84856258903
-
The molecular diversity of adaptive convergence
-
Tenaillon, O., A. Rodríguez-Verdugo, R. L. Gaut, P. McDonald, A. F. Bennett, A. D. Long, and B. S. Gaut. 2012. The molecular diversity of adaptive convergence. Science 335:457-461.
-
(2012)
Science
, vol.335
, pp. 457-461
-
-
Tenaillon, O.1
Rodríguez-Verdugo, A.2
Gaut, R.L.3
McDonald, P.4
Bennett, A.F.5
Long, A.D.6
Gaut, B.S.7
-
69
-
-
0034535109
-
Cost of host radiation in an RNA virus
-
Turner, P. E., and S. F. Elena. 2000. Cost of host radiation in an RNA virus. Genetics 156:1465-1470.
-
(2000)
Genetics
, vol.156
, pp. 1465-1470
-
-
Turner, P.E.1
Elena, S.F.2
-
72
-
-
21044435697
-
Perspective: sign epistasis and genetic constraint on evolutionary trajectories
-
Weinreich, D. M., R. A. Watson, and L. Chao. 2005. Perspective: sign epistasis and genetic constraint on evolutionary trajectories. Evolution 59:1165-1174.
-
(2005)
Evolution
, vol.59
, pp. 1165-1174
-
-
Weinreich, D.M.1
Watson, R.A.2
Chao, L.3
-
73
-
-
80052324811
-
Hunger artists: yeast adapted to carbon limitation show tradeoffs under carbon sufficiency
-
Wenger, J. W., J. Piotrowski, S. Nagarajan, K. Chiotti, G. Sherlock, and F. Rosenzweig. 2011. Hunger artists: yeast adapted to carbon limitation show tradeoffs under carbon sufficiency. PLoS Genet. 7:e1002202.
-
(2011)
PLoS Genet.
, vol.7
-
-
Wenger, J.W.1
Piotrowski, J.2
Nagarajan, S.3
Chiotti, K.4
Sherlock, G.5
Rosenzweig, F.6
-
74
-
-
0000055057
-
Pleiotropy, natural selection, and the evolution of senescence
-
Williams, G. C. 1957. Pleiotropy, natural selection, and the evolution of senescence. Evolution 11:398-411.
-
(1957)
Evolution
, vol.11
, pp. 398-411
-
-
Williams, G.C.1
-
75
-
-
4143069266
-
Evolutionary genomics of ecological specialization
-
Zhong, S., A. Khodursky, D. E. Dykhuizen, and A. M. Dean. 2004. Evolutionary genomics of ecological specialization. Proc. Natl. Acad. Sci. USA 101:11719-11724.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 11719-11724
-
-
Zhong, S.1
Khodursky, A.2
Dykhuizen, D.E.3
Dean, A.M.4
-
76
-
-
0041817649
-
Bacterial evolution through the selective loss of beneficial genes: tradeoffs in expression involving two loci
-
Zinser, E. R., D. Schneider, M. Blot, and R. Kolter. 2003. Bacterial evolution through the selective loss of beneficial genes: tradeoffs in expression involving two loci. Genetics 164:1271-1277.
-
(2003)
Genetics
, vol.164
, pp. 1271-1277
-
-
Zinser, E.R.1
Schneider, D.2
Blot, M.3
Kolter, R.4
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