-
1
-
-
33845734583
-
The distribution of beneficial mutant effects under strong selection
-
Barrett RDH, M'Gonigle LK, Otto SP (2006). The distribution of beneficial mutant effects under strong selection. Genetics 174: 2071-2079.
-
(2006)
Genetics
, vol.174
, pp. 2071-2079
-
-
Barrett, R.D.H.1
M'gonigle, L.K.2
Otto, S.P.3
-
3
-
-
79954465250
-
On measuring selection in experimental evolution
-
Chevin LM (2011). On measuring selection in experimental evolution. Biol Lett 7: 210-213.
-
(2011)
Biol Lett
, vol.7
, pp. 210-213
-
-
Chevin, L.M.1
-
4
-
-
70349690200
-
Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation - Art no. e1000652
-
Chou HH, Berthet J, Marx CJ (2009). Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation - art. no. e1000652. PLoS Genet 5: 652-652.
-
(2009)
PLoS Genet
, vol.5
, pp. 652-652
-
-
Chou, H.H.1
Berthet, J.2
Marx, C.J.3
-
5
-
-
79957958115
-
Diminishing returns epistasis among beneficial mutations decelerates adaptation
-
Chou HH, Chiu HC, Delaney NF, Segre D, Marx CJ (2011). Diminishing returns epistasis among beneficial mutations decelerates adaptation. Science 332: 1190-1192.
-
(2011)
Science
, vol.332
, pp. 1190-1192
-
-
Chou, H.H.1
Chiu, H.C.2
Delaney, N.F.3
Segre, D.4
Marx, C.J.5
-
6
-
-
75349114758
-
Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations
-
Conrad TM, Joyce AR, Applebee MK, Barrett CL, Xie B, Gao Y et al. (2009). Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations. Genome Biol 10: 10.
-
(2009)
Genome Biol
, vol.10
, pp. 10
-
-
Conrad, T.M.1
Joyce, A.R.2
Applebee, M.K.3
Barrett, C.L.4
Xie, B.5
Gao, Y.6
-
7
-
-
0034977941
-
Evolution of thermal dependence of growth rate of Escherichia coli populations during 20,000 generations in a constant environment
-
Cooper VS, Bennett AF, Lenski RE (2001). Evolution of thermal dependence of growth rate of Escherichia coli populations during 20,000 generations in a constant environment. Evolution 55: 889-896.
-
(2001)
Evolution
, vol.55
, pp. 889-896
-
-
Cooper, V.S.1
Bennett, A.F.2
Lenski, R.E.3
-
8
-
-
0034641929
-
The population genetics of ecological specialization in evolving Escherichia coli populations
-
Cooper VS, Lenski RE (2000). The population genetics of ecological specialization in evolving Escherichia coli populations. Nature 407: 736-739.
-
(2000)
Nature
, vol.407
, pp. 736-739
-
-
Cooper, V.S.1
Lenski, R.E.2
-
9
-
-
0027457784
-
Derepression of LamB protein facilitates outer membrane permeation of carbohydrates into Escherichia coli under conditions of nutrient stress
-
Death A, Notley L, Ferenci T (1993). Derepression of LamB protein facilitates outer membrane permeation of carbohydrates into Escherichia coli under conditions of nutrient stress. J Bacteriol 175: 1475-1483.
-
(1993)
J Bacteriol
, vol.175
, pp. 1475-1483
-
-
Death, A.1
Notley, L.2
Ferenci, T.3
-
11
-
-
0038441327
-
Evolution experiments with microorganisms: The dynamics and genetic bases of adaptation
-
Elena SF, Lenski RE (2003). Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat Rev Genet 4: 457-469.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 457-469
-
-
Elena, S.F.1
Lenski, R.E.2
-
12
-
-
0030200309
-
Adaptation to life at micromolar nutrient levels: The regulation of Escherichia coli glucose transport by endoinduction and cAMP
-
Ferenci T (1996). Adaptation to life at micromolar nutrient levels: the regulation of Escherichia coli glucose transport by endoinduction and cAMP. FEMS Microbiol Rev 18: 301-317.
-
(1996)
FEMS Microbiol Rev
, vol.18
, pp. 301-317
-
-
Ferenci, T.1
-
13
-
-
21244473267
-
Maintaining a healthy SPANC balance through regulatory and mutational adaptation
-
Ferenci T (2005). Maintaining a healthy SPANC balance through regulatory and mutational adaptation. Mol Microbiol 57: 1-8.
-
(2005)
Mol Microbiol
, vol.57
, pp. 1-8
-
-
Ferenci, T.1
-
14
-
-
34547739032
-
Bacterial physiology, regulation and mutational adaptation in a chemostat environment
-
Ferenci T (2007). Bacterial physiology, regulation and mutational adaptation in a chemostat environment. Adv Microb Physiol 53: 169-229.
-
(2007)
Adv Microb Physiol
, vol.53
, pp. 169-229
-
-
Ferenci, T.1
-
15
-
-
67549090009
-
Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12
-
Ferenci T, Zhou ZM, Betteridge T, Ren Y, Liu Y, Feng L et al. (2009). Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12. J Bacteriol 191: 4025-4029.
-
(2009)
J Bacteriol
, vol.191
, pp. 4025-4029
-
-
Ferenci, T.1
Zhou, Z.M.2
Betteridge, T.3
Ren, Y.4
Liu, Y.5
Feng, L.6
-
16
-
-
4344682527
-
The small RNA regulators of Escherichia coli: Roles and mechanisms
-
Gottesman S (2004). The small RNA regulators of Escherichia coli: roles and mechanisms. Annu Rev Microbiol 58: 303-328.
-
(2004)
Annu Rev Microbiol
, vol.58
, pp. 303-328
-
-
Gottesman, S.1
-
17
-
-
84955349191
-
The mathematical theory of natural and artificial selection, part V: Selection and mutation
-
Haldane JBS (1927). The mathematical theory of natural and artificial selection, part V: selection and mutation. Proc Camb Philos Soc 23: 838-844.
-
(1927)
Proc Camb Philos Soc
, vol.23
, pp. 838-844
-
-
Haldane, J.B.S.1
-
18
-
-
33645076253
-
An equivalence principle for the incorporation of favorable mutations in asexual populations
-
Hegreness M, Shoresh N, Hartl D, Kishony R (2006). An equivalence principle for the incorporation of favorable mutations in asexual populations. Science 311: 1615-1617.
-
(2006)
Science
, vol.311
, pp. 1615-1617
-
-
Hegreness, M.1
Shoresh, N.2
Hartl, D.3
Kishony, R.4
-
20
-
-
33645394597
-
Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria
-
Kassen R, Bataillon T (2006). Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria. Nat Genet 38: 484-488.
-
(2006)
Nat Genet
, vol.38
, pp. 484-488
-
-
Kassen, R.1
Bataillon, T.2
-
21
-
-
79957948242
-
Negative epistasis between beneficial mutations in an evolving bacterial population
-
Khan AI, Dinh DM, Schneider D, Lenski RE, Cooper TF (2011). Negative epistasis between beneficial mutations in an evolving bacterial population. Science 332: 1193-1196.
-
(2011)
Science
, vol.332
, pp. 1193-1196
-
-
Khan, A.I.1
Dinh, D.M.2
Schneider, D.3
Lenski, R.E.4
Cooper, T.F.5
-
22
-
-
33646181748
-
Genotype-by-environment interactions influencing the emergence of rpoS mutations in Eschetichia coli populations
-
King T, Seeto S, Ferenci T (2006). Genotype-by-environment interactions influencing the emergence of rpoS mutations in Eschetichia coli populations. Genetics 172: 2071-2079.
-
(2006)
Genetics
, vol.172
, pp. 2071-2079
-
-
King, T.1
Seeto, S.2
Ferenci, T.3
-
23
-
-
0041853578
-
Environmental stresses can alleviate the average deleterious effect of mutations
-
Kishony R, Leibler S (2003). Environmental stresses can alleviate the average deleterious effect of mutations. J Biol 2: e14.
-
(2003)
J Biol
, vol.2
-
-
Kishony, R.1
Leibler, S.2
-
24
-
-
72249097352
-
Growth rate-dependent global effects on gene expression in bacteria
-
Klumpp S, Zhang ZG, Hwa T (2009). Growth rate-dependent global effects on gene expression in bacteria. Cell 139: 1366-1375.
-
(2009)
Cell
, vol.139
, pp. 1366-1375
-
-
Klumpp, S.1
Zhang, Z.G.2
Hwa, T.3
-
25
-
-
77953485587
-
Epistasis and frequency dependence influence the fitness of an adaptive mutation in a diversifying lineage
-
Le Gac M, Doebeli M (2010). Epistasis and frequency dependence influence the fitness of an adaptive mutation in a diversifying lineage. Mol Ecol 19: 2430-2438.
-
(2010)
Mol Ecol
, vol.19
, pp. 2430-2438
-
-
Le Gac, M.1
Doebeli, M.2
-
26
-
-
78149293610
-
Mutational robustness of ribosomal protein genes
-
Lind PA, Berg OG, Andersson DI (2010). Mutational robustness of ribosomal protein genes. Science 330: 825-827.
-
(2010)
Science
, vol.330
, pp. 825-827
-
-
Lind, P.A.1
Berg, O.G.2
Andersson, D.I.3
-
27
-
-
72049095718
-
Structure of Escherichia coli Hfq bound to polyriboadenylate RNA
-
Link TM, Valentin-Hansen P, Brennan RG (2009). Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. Proc Natl Acad Sci USA 106: 19286-19291.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 19286-19291
-
-
Link, T.M.1
Valentin-Hansen, P.2
Brennan, R.G.3
-
28
-
-
2542635754
-
The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens
-
MacLean RC, Bell G, Rainey PB (2004). The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens. Proc Natl Acad Sci USA 101: 8072-8077.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 8072-8077
-
-
MacLean, R.C.1
Bell, G.2
Rainey, P.B.3
-
29
-
-
62149084484
-
The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosa - Art
-
MacLean RC, Buckling A (2009). The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosa - art. no. e1000406. PLoS Genet 5: 406-406.
-
(2009)
PLoS Genet
, vol.5
, pp. 406-406
-
-
MacLean, R.C.1
Buckling, A.2
-
31
-
-
77956532421
-
Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli
-
Maharjan R, Zhou ZM, Ren Y, Li Y, Gaffe J, Schneider D et al. (2010). Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli. J Bacteriol 192: 4517-4521.
-
(2010)
J Bacteriol
, vol.192
, pp. 4517-4521
-
-
Maharjan, R.1
Zhou, Z.M.2
Ren, Y.3
Li, Y.4
Gaffe, J.5
Schneider, D.6
-
33
-
-
79551470995
-
The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens
-
McDonald MJ, Cooper TF, Beaumont HJE, Rainey PB (2011). The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens. Biol Lett 7: 98-100.
-
(2011)
Biol Lett
, vol.7
, pp. 98-100
-
-
McDonald, M.J.1
Cooper, T.F.2
Beaumont, H.J.E.3
Rainey, P.B.4
-
34
-
-
16544365115
-
Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs
-
Mikulecky PJ, Kaw MK, Brescia CC, Takach JC, Sledjeski DD, Feig AL (2004). Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs. Nat Struct Mol Biol 11: 1206-1214.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 1206-1214
-
-
Mikulecky, P.J.1
Kaw, M.K.2
Brescia, C.C.3
Takach, J.C.4
Sledjeski, D.D.5
Feig, A.L.6
-
35
-
-
0003785155
-
-
Cold Spring Harbor Laboratory: Cold Spring Harbor, NY
-
Miller J (1972). Experiments in Molecular Genetics. Cold Spring Harbor Laboratory: Cold Spring Harbor, NY.
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.1
-
36
-
-
0033068938
-
Adaptive mgl-regulatory mutations and genetic diversity evolving in glucose-limited Escherichia coli populations
-
Notley-McRobb L, Ferenci T (1999). Adaptive mgl-regulatory mutations and genetic diversity evolving in glucose-limited Escherichia coli populations. Environ Microbiol 1: 33-43.
-
(1999)
Environ Microbiol
, vol.1
, pp. 33-43
-
-
Notley-Mcrobb, L.1
Ferenci, T.2
-
37
-
-
0033907234
-
Substrate specificity and signal transduction pathways in the glucose-specific enzyme II (EIIGlc) component of the Escherichia coli phosphotransferase system
-
Notley-McRobb L, Ferenci T (2000). Substrate specificity and signal transduction pathways in the glucose-specific enzyme II (EIIGlc) component of the Escherichia coli phosphotransferase system. J Bacteriol 182: 4437-4442.
-
(2000)
J Bacteriol
, vol.182
, pp. 4437-4442
-
-
Notley-Mcrobb, L.1
Ferenci, T.2
-
38
-
-
0036181664
-
RpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses
-
Notley-McRobb L, King T, Ferenci T (2002). rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses. J Bacteriol 184: 806-811.
-
(2002)
J Bacteriol
, vol.184
, pp. 806-811
-
-
Notley-Mcrobb, L.1
King, T.2
Ferenci, T.3
-
39
-
-
0037461340
-
The influence of cellular physiology on the initiation of mutational pathways in escherichia coli populations
-
Notley-McRobb L, Seeto S, Ferenci T (2003). The influence of cellular physiology on the initiation of mutational pathways in escherichia coli populations. Proc R Soc Lond Ser B-Biol Sci 270: 843-848.
-
(2003)
Proc R Soc Lond ser B-Biol Sci
, vol.270
, pp. 843-848
-
-
Notley-Mcrobb, L.1
Seeto, S.2
Ferenci, T.3
-
40
-
-
0028932110
-
Differential expression of mal genes under cAMP and endogenous inducer control in nutrient stressed Escherichia coli
-
Notley L, Ferenci T (1995). Differential expression of mal genes under cAMP and endogenous inducer control in nutrient stressed Escherichia coli. Mol Microbiol 16: 121-129.
-
(1995)
Mol Microbiol
, vol.16
, pp. 121-129
-
-
Notley, L.1
Ferenci, T.2
-
41
-
-
0029924025
-
Induction of RpoS-dependent functions in glucose-limited continuous culture: What level of nutrient limitation induces the stationary phase of Escherichia coli?
-
Notley L, Ferenci T (1996). Induction of RpoS-dependent functions in glucose-limited continuous culture: what level of nutrient limitation induces the stationary phase of Escherichia coli? J Bacteriol 178: 1465-1468.
-
(1996)
J Bacteriol
, vol.178
, pp. 1465-1468
-
-
Notley, L.1
Ferenci, T.2
-
42
-
-
67651119869
-
Fitness and its role in evolutionary genetics
-
Orr HA (2009). Fitness and its role in evolutionary genetics. Nat Rev Genet 10: 531-539.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 531-539
-
-
Orr, H.A.1
-
43
-
-
82955229552
-
Impact of epistasis and pleiotropy on evolutionary adaptation
-
Ostman B, Hintze A, Adami C (2012). Impact of epistasis and pleiotropy on evolutionary adaptation. Proc Roy Soc B-Biol Sci 279: 247-256.
-
(2012)
Proc Roy Soc B-Biol Sci
, vol.279
, pp. 247-256
-
-
Ostman, B.1
Hintze, A.2
Adami, C.3
-
44
-
-
37349107011
-
The genetic basis of parallel and divergent phenotypic responses in evolving populations of Escherichia coli
-
Ostrowski EA, Woods RJ, Lenski RE (2008). The genetic basis of parallel and divergent phenotypic responses in evolving populations of Escherichia coli. Proc Roy Soc B-Biol Sci 275: 277-284.
-
(2008)
Proc Roy Soc B-Biol Sci
, vol.275
, pp. 277-284
-
-
Ostrowski, E.A.1
Woods, R.J.2
Lenski, R.E.3
-
45
-
-
34547924819
-
Adaptive mutations in bacteria: High rate and small effects
-
Perfeito L, Fernandes L, Mota C, Gordo I (2007). Adaptive mutations in bacteria: high rate and small effects. Science 317: 813-815.
-
(2007)
Science
, vol.317
, pp. 813-815
-
-
Perfeito, L.1
Fernandes, L.2
Mota, C.3
Gordo, I.4
-
46
-
-
34548769341
-
Evolution of global regulatory networks during a long-term experiment with Escherichia coli
-
Philippe N, Crozat E, Lenski RE, Schneider D (2007). Evolution of global regulatory networks during a long-term experiment with Escherichia coli. Bioessays 29: 846-860.
-
(2007)
Bioessays
, vol.29
, pp. 846-860
-
-
Philippe, N.1
Crozat, E.2
Lenski, R.E.3
Schneider, D.4
-
47
-
-
57549104704
-
Death and cannibalism in a seasonal environment facilitate bacterial coexistence
-
Rozen DE, Philippe N, Arjan de Visser J, Lenski RE, Schneider D (2009). Death and cannibalism in a seasonal environment facilitate bacterial coexistence. Ecol Lett 12: 34-44.
-
(2009)
Ecol Lett
, vol.12
, pp. 34-44
-
-
Rozen, D.E.1
Philippe, N.2
Arjan De Visser, J.3
Lenski, R.E.4
Schneider, D.5
-
48
-
-
78449268845
-
Interdependence of cell growth and gene expression: Origins and consequences
-
Scott M, Gunderson CW, Mateescu EM, Zhang ZG, Hwa T (2010). Interdependence of cell growth and gene expression: origins and consequences. Science 330: 1099-1102.
-
(2010)
Science
, vol.330
, pp. 1099-1102
-
-
Scott, M.1
Gunderson, C.W.2
Mateescu, E.M.3
Zhang, Z.G.4
Hwa, T.5
-
49
-
-
78951491095
-
One hundred years of pleiotropy: A retrospective
-
Stearns FW (2010). One hundred years of pleiotropy: a retrospective. Genetics 186: 767-773.
-
(2010)
Genetics
, vol.186
, pp. 767-773
-
-
Stearns, F.W.1
-
50
-
-
0028243445
-
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12
-
Tsui HC, Leung HC, Winkler ME (1994). Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12. Mol Microbiol 13: 35-49.
-
(1994)
Mol Microbiol
, vol.13
, pp. 35-49
-
-
Tsui, H.C.1
Leung, H.C.2
Winkler, M.E.3
-
51
-
-
0031686598
-
Effect of slow growth on metabolism of Escherichia coli, as revealed by global metabolite pool ("metabolome") analysis
-
Tweeddale H, Notley-McRobb L, Ferenci T (1998). Effect of slow growth on metabolism of Escherichia coli, as revealed by global metabolite pool ("metabolome") analysis. J Bacteriol 180: 5109-5116.
-
(1998)
J Bacteriol
, vol.180
, pp. 5109-5116
-
-
Tweeddale, H.1
Notley-Mcrobb, L.2
Ferenci, T.3
-
52
-
-
38349138513
-
The C-terminal domain of Escherichia coli Hfq is required for regulation
-
Vec?erek B, Rajkowitsch L, Sonnleitner E, Schroeder R, Blasi U (2008). The C-terminal domain of Escherichia coli Hfq is required for regulation. Nucleic Acids Res 36: 133-143.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 133-143
-
-
Vecerek, B.1
Rajkowitsch, L.2
Sonnleitner, E.3
Schroeder, R.4
Blasi, U.5
-
53
-
-
77958493094
-
Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation
-
Wang L, Spira B, Zhou ZM, Feng L, Maharjan RP, Li XM et al. (2010). Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation. Genome Biol Evol 2: 478-487.
-
(2010)
Genome Biol Evol
, vol.2
, pp. 478-487
-
-
Wang, L.1
Spira, B.2
Zhou, Z.M.3
Feng, L.4
Maharjan, R.P.5
Li, X.M.6
-
54
-
-
34250377197
-
The weird and wonderful world of bacterial ribosome regulation
-
Wilson DN, Nierhaus KH (2007). The weird and wonderful world of bacterial ribosome regulation. Crit Rev Biochem Mol Biol 42: 187-219.
-
(2007)
Crit Rev Biochem Mol Biol
, vol.42
, pp. 187-219
-
-
Wilson, D.N.1
Nierhaus, K.H.2
-
55
-
-
0032570006
-
A new system to place single copies of genes, sites and lacZ fusions on the Escherichia coli chromosome
-
Yu DG, Court DL (1998). A new system to place single copies of genes, sites and lacZ fusions on the Escherichia coli chromosome. Gene 223: 77-81.
-
(1998)
Gene
, vol.223
, pp. 77-81
-
-
Yu, D.G.1
Court, D.L.2
|