메뉴 건너뛰기




Volumn 9, Issue 2, 2014, Pages

Insight into buffalo (Bubalus bubalis) RIG1 and MDA5 receptors: A comparative study on dsRNA recognition and in-vitro antiviral response

Author keywords

[No Author keywords available]

Indexed keywords

BETA INTERFERON; DOUBLE STRANDED RNA; INTERFERON REGULATORY FACTOR; MELANOMA DIFFERENTIATION ASSOCIATED GENE 5 PROTEIN; PATTERN RECOGNITION RECEPTOR; POLYINOSINIC POLYCYTIDYLIC ACID; RETINOIC ACID INDUCIBLE PROTEIN I; UNCLASSIFIED DRUG; DEAD BOX PROTEIN; INTERFERON; PRIMER DNA; RETINOIC ACID RECEPTOR; VIRUS RNA;

EID: 84896354825     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0089788     Document Type: Article
Times cited : (7)

References (52)
  • 2
    • 31344461659 scopus 로고    scopus 로고
    • Innate immune recognition of viral infection
    • DOI 10.1038/ni1303, PII N1303
    • Kawai T, Akira S (2006) Innate immune recognition of viral infection. Nat Immunol 7: 131-137. (Pubitemid 43135878)
    • (2006) Nature Immunology , vol.7 , Issue.2 , pp. 131-137
    • Kawai, T.1    Akira, S.2
  • 4
    • 33845416390 scopus 로고    scopus 로고
    • NAK-associated protein 1 participates in both the TLR3 and the cytoplasmic pathways in type I IFN induction
    • Sasai M, Shingai M, Funami K, Yoneyama M, Fujita T, et al. (2006) NAK-associated protein 1 participates in both the TLR3 and the cytoplasmic pathways in type I IFN induction. J Immunol 177: 8676-8683. (Pubitemid 44893832)
    • (2006) Journal of Immunology , vol.177 , Issue.12 , pp. 8676-8683
    • Sasai, M.1    Shingai, M.2    Funami, K.3    Yoneyama, M.4    Fujita, T.5    Matsumoto, M.6    Seya, T.7
  • 5
    • 80054685883 scopus 로고    scopus 로고
    • Structural insights into RNA recognition by RIG1
    • Luo D, Ding SC, Vela A, Kohlway A, Lindenbach BD, et al. (2011) Structural insights into RNA recognition by RIG1. Cell 147: 409-22.
    • (2011) Cell , vol.147 , pp. 409-422
    • Luo, D.1    Ding, S.C.2    Vela, A.3    Kohlway, A.4    Lindenbach, B.D.5
  • 6
    • 84872604349 scopus 로고    scopus 로고
    • Structural basis for dsRNA recognition, filament formation, and antiviral signal activation by MDA5
    • Wu B, Peisley A, Richards C, Yao H, Zeng X, et al. (2013) Structural basis for dsRNA recognition, filament formation, and antiviral signal activation by MDA5. Cell 152: 276-89.
    • (2013) Cell , vol.152 , pp. 276-289
    • Wu, B.1    Peisley, A.2    Richards, C.3    Yao, H.4    Zeng, X.5
  • 7
    • 79956314622 scopus 로고    scopus 로고
    • Immune Signaling by RIG1-like Receptors
    • Loo YM, Gale M (2011) Immune Signaling by RIG1-like Receptors. Immunity 34: 680-692.
    • (2011) Immunity , vol.34 , pp. 680-692
    • Loo, Y.M.1    Gale, M.2
  • 8
    • 67650510680 scopus 로고    scopus 로고
    • Solution structure of cytosolic RNA sensor MDA 5 and LGP 2 C-terminal domains: Identification of the RNA recognition loop in RIG1-like receptors
    • Takahasi K, Kumeta H, Tsuduki N, Narita R, Shigemoto T, et al. (2009) Solution structure of cytosolic RNA sensor MDA 5 and LGP 2 C-terminal domains: identification of the RNA recognition loop in RIG1-like receptors. J Biol Chem 284: 17465-17474.
    • (2009) J Biol Chem , vol.284 , pp. 17465-17474
    • Takahasi, K.1    Kumeta, H.2    Tsuduki, N.3    Narita, R.4    Shigemoto, T.5
  • 10
    • 80054703126 scopus 로고    scopus 로고
    • Structural basis for the activation of innate immune pattern-recognition receptor RIG1 by viral RNA
    • Kowalinski E, Lunardi T, McCarthy AA, Louber J, Brunel J, et al. (2011) Structural basis for the activation of innate immune pattern-recognition receptor RIG1 by viral RNA. Cell 147: 423-35.
    • (2011) Cell , vol.147 , pp. 423-435
    • Kowalinski, E.1    Lunardi, T.2    McCarthy, A.A.3    Louber, J.4    Brunel, J.5
  • 12
    • 84862909216 scopus 로고    scopus 로고
    • Cooperative assembly and dynamic disassembly of MDA5 filaments for viral dsRNA recognition
    • Peisley A, Lin C, Wu B, Orme-Johnson M, Liu M, et al. (2011) Cooperative assembly and dynamic disassembly of MDA5 filaments for viral dsRNA recognition. Proc Natl Acad Sci USA 108: 21010-21015.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 21010-21015
    • Peisley, A.1    Lin, C.2    Wu, B.3    Orme-Johnson, M.4    Liu, M.5
  • 14
    • 33646342149 scopus 로고    scopus 로고
    • Differential roles of MDA5 and RIG1 helicases in the recognition of RNA viruses
    • Kato H, Takeuchi O, Sato S, Yoneyama M, Yamamoto M, et al. (2006) Differential roles of MDA5 and RIG1 helicases in the recognition of RNA viruses. Nature 441: 101-105.
    • (2006) Nature , vol.441 , pp. 101-105
    • Kato, H.1    Takeuchi, O.2    Sato, S.3    Yoneyama, M.4    Yamamoto, M.5
  • 15
    • 80052143412 scopus 로고    scopus 로고
    • RIG1-like receptors: Cytoplasmic sensors for non-self RNA
    • Kato H, Takahasi K, Fujita T (2011) RIG1-like receptors: cytoplasmic sensors for non-self RNA. Immunol Rev 243: 91-98.
    • (2011) Immunol Rev , vol.243 , pp. 91-98
    • Kato, H.1    Takahasi, K.2    Fujita, T.3
  • 16
    • 84883491208 scopus 로고    scopus 로고
    • Visualisation of direct interaction of MDA5 and the dsRNA replicative intermediate form of positive strand RNA viruses
    • Triantafilou K, Vakakis E, Kar S, Richer E, Evans GL, et al. (2012) Visualisation of direct interaction of MDA5 and the dsRNA replicative intermediate form of positive strand RNA viruses. J Cell Sci 125: 4761-4769.
    • (2012) J Cell Sci , vol.125 , pp. 4761-4769
    • Triantafilou, K.1    Vakakis, E.2    Kar, S.3    Richer, E.4    Evans, G.L.5
  • 17
    • 77957997708 scopus 로고    scopus 로고
    • Preference of RIG1 for short viral RNA molecules in infected cells revealed by next by next-generation sequencing
    • Baum A, Sachidanandam R, Garcia-Sastre A (2010) Preference of RIG1 for short viral RNA molecules in infected cells revealed by next by next-generation sequencing Proc Natl Acad Sci USA 107: 16303-16308.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 16303-16308
    • Baum, A.1    Sachidanandam, R.2    Garcia-Sastre, A.3
  • 18
    • 68049089651 scopus 로고    scopus 로고
    • Recognition of 5′ triphosphate by RIG1 helicase requires short blunt double-stranded RNA as contained in panhandle of negative-strand virus
    • Schlee M, Roth A, Hornung V, Hagmann CA, Wimmenauer V, et al. (2009) Recognition of 5′ triphosphate by RIG1 helicase requires short blunt double-stranded RNA as contained in panhandle of negative-strand virus. Immunity 31: 25-34.
    • (2009) Immunity , vol.31 , pp. 25-34
    • Schlee, M.1    Roth, A.2    Hornung, V.3    Hagmann, C.A.4    Wimmenauer, V.5
  • 19
    • 33845431988 scopus 로고    scopus 로고
    • RNA- and virus-independent inhibition of antiviral signaling by RNA helicase LGP2
    • DOI 10.1128/JVI.01325-06
    • Komuro A, Horvath CM (2006) RNA- and virus-independent inhibition of antiviral signaling by RNA helicase LGP2. J Virol 80: 12332-12342. (Pubitemid 44904383)
    • (2006) Journal of Virology , vol.80 , Issue.24 , pp. 12332-12342
    • Komuro, A.1    Horvath, C.M.2
  • 21
    • 1642348822 scopus 로고    scopus 로고
    • Expression analysis and genomic characterization of human melanoma differentiation associated gene-5, mda-5: A novel type I interferon-responsive apoptosis-inducing gene
    • DOI 10.1038/sj.onc.1207300
    • Kang DC, Gopalkrishnan RV, Lin L, Randolph A, Valerie K, et al. (2004) Expression analysis and genomic characterization of human melanoma differentiation associated gene-5, MDA5: a novel type I interferon-responsive apoptosis-inducing gene. Oncogene 23: 1789-1800. (Pubitemid 38445170)
    • (2004) Oncogene , vol.23 , Issue.9 , pp. 1789-1800
    • Kang, D.-C.1    Gopalkrishnan, R.V.2    Lin, L.3    Randolph, A.4    Valerie, K.5    Pestka, S.6    Fisher, P.B.7
  • 22
    • 79961178157 scopus 로고    scopus 로고
    • Expression and functional characterization of the RIG1-like receptors MDA5 and LGP2 in Rainbow trout (Oncorhynchus mykiss)
    • Chang M, Collet B, Nie P, Lester K, Campbell S, et al. (2011) Expression and functional characterization of the RIG1-like receptors MDA5 and LGP2 in Rainbow trout (Oncorhynchus mykiss). J Virol 85: 8403-12.
    • (2011) J Virol , vol.85 , pp. 8403-8412
    • Chang, M.1    Collet, B.2    Nie, P.3    Lester, K.4    Campbell, S.5
  • 23
    • 84896331277 scopus 로고    scopus 로고
    • FAO FROfAa Bangkok, Thailand: Pacific Editor
    • FAO (2000) Water Buffalo: an asset undervalued, FROfAa Bangkok, Thailand: Pacific Editor: 1-6.
    • (2000) Water Buffalo: An Asset Undervalued , pp. 1-6
  • 24
    • 33645499522 scopus 로고    scopus 로고
    • Genetic resistance to Brucella abortus in the water buffalo (Bubalus bubalis)
    • Borriello G, Capparelli R, Bianco M, Fenizia D, Alfano F, et al. (2006) Genetic resistance to Brucella abortus in the water buffalo (Bubalus bubalis). Infect Immun 74: 2115-2120.
    • (2006) Infect Immun , vol.74 , pp. 2115-2120
    • Borriello, G.1    Capparelli, R.2    Bianco, M.3    Fenizia, D.4    Alfano, F.5
  • 25
    • 0035710746 scopus 로고    scopus 로고
    • -ΔΔCT method
    • DOI 10.1006/meth.2001.1262
    • Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCt method. Methods 25: 402-408. (Pubitemid 34164012)
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 26
    • 46249092554 scopus 로고    scopus 로고
    • GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
    • Hess B, Kutzner C, van der Spoel D, Lindahl E (2008) GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation. J Chem Theory Comput 14: 435-447.
    • (2008) J Chem Theory Comput , vol.14 , pp. 435-447
    • Hess, B.1    Kutzner, C.2    Van Der Spoel, D.3    Lindahl, E.4
  • 28
    • 84867537628 scopus 로고    scopus 로고
    • Exploring PHD fingers and H3K4me0 interactions with molecular dynamics simulations and binding free energy calculations: AIRE-PHD1, a comparative study
    • Spiliotopoulos D, Spitaleri A, Musco G (2012) Exploring PHD fingers and H3K4me0 interactions with molecular dynamics simulations and binding free energy calculations: AIRE-PHD1, a comparative study. PLoS One 7: e46902.
    • (2012) PLoS One , vol.7
    • Spiliotopoulos, D.1    Spitaleri, A.2    Musco, G.3
  • 29
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 31
    • 79251492014 scopus 로고    scopus 로고
    • Co-ordinated role of TLR3, RIG1 and MDA5 in the innate response to rhinovirus in bronchial epithelium
    • Slater L, Bartlett NW, Haas JJ, Zhu J, Message SD (2010) Co-ordinated role of TLR3, RIG1 and MDA5 in the innate response to rhinovirus in bronchial epithelium. PLoS Pathog 6: e1001178.
    • (2010) PLoS Pathog , vol.6
    • Slater, L.1    Bartlett, N.W.2    Haas, J.J.3    Zhu, J.4    Message, S.D.5
  • 33
    • 84855918194 scopus 로고    scopus 로고
    • Regulation of RLR-mediated innate immune signaling-it is all about keeping the balance
    • Eisenacher K, Krug A (2012) Regulation of RLR-mediated innate immune signaling-it is all about keeping the balance. Eur J Cell Biol 91: 36-47.
    • (2012) Eur J Cell Biol , vol.91 , pp. 36-47
    • Eisenacher, K.1    Krug, A.2
  • 34
    • 67749111851 scopus 로고    scopus 로고
    • Mitochondrial antiviral signaling protein plays a major role in induction of the fish innate immune response against RNA and DNA Viruses
    • Biacchesi S, LeBerre M, Lamoureux A, Louise Y, Emilie Lauret E, et al. (2009) Mitochondrial antiviral signaling protein plays a major role in induction of the fish innate immune response against RNA and DNA Viruses. J Virol 83: 7815-7827.
    • (2009) J Virol , vol.83 , pp. 7815-7827
    • Biacchesi, S.1    LeBerre, M.2    Lamoureux, A.3    Louise, Y.4    Emilie Lauret, E.5
  • 36
    • 55949083181 scopus 로고    scopus 로고
    • Evolution of MDA5/RIG1-dependent innate immunity: Independent evolution by domain grafting
    • Sarkar T, Desalle R, Fisher PB (2008) Evolution of MDA5/RIG1-dependent innate immunity: independent evolution by domain grafting. Proc Natl Acad Sci USA 105: 17040-17045.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 17040-17045
    • Sarkar, T.1    Desalle, R.2    Fisher, P.B.3
  • 37
    • 66249094862 scopus 로고    scopus 로고
    • Origin and evolution of the RIG1 like RNA helicase gene family
    • Zou J, Chang M, Nie P, Secombes CJ (2009) Origin and evolution of the RIG1 like RNA helicase gene family. BMC Evol Biol 9: 85.
    • (2009) BMC Evol Biol , vol.9 , pp. 85
    • Zou, J.1    Chang, M.2    Nie, P.3    Secombes, C.J.4
  • 39
    • 81555204380 scopus 로고    scopus 로고
    • Structural basis of RNA recognition and activation by innate immune receptor RIG-1
    • Jiang F, Ramanathan A, Miller MT, Tang GQ, Gale M Jr, et al. (2011) Structural basis of RNA recognition and activation by innate immune receptor RIG-1. Nature 479: 423-427.
    • (2011) Nature , vol.479 , pp. 423-427
    • Jiang, F.1    Ramanathan, A.2    Miller, M.T.3    Tang, G.Q.4    Gale Jr., M.5
  • 40
    • 80255141860 scopus 로고    scopus 로고
    • The RIG1 ATPase domain structure reveals insights into ATP-dependent antiviral signaling
    • Civril F, Bennett M, Moldt M, Deimling T, Witte G, et al. (2011) The RIG1 ATPase domain structure reveals insights into ATP-dependent antiviral signaling. EMBO Rep 12: 1127-34.
    • (2011) EMBO Rep , vol.12 , pp. 1127-1134
    • Civril, F.1    Bennett, M.2    Moldt, M.3    Deimling, T.4    Witte, G.5
  • 41
    • 77955481642 scopus 로고    scopus 로고
    • The structural basis of 5′ triphosphate double-stranded RNA recognition by RIG1 C-terminal domain
    • Lu C, Xu H, Ranjith-Kumar CT, Brooks MT, Hou TY, et al. (2010) The structural basis of 5′ triphosphate double-stranded RNA recognition by RIG1 C-terminal domain. Structure 18: 1032-43.
    • (2010) Structure , vol.18 , pp. 1032-1043
    • Lu, C.1    Xu, H.2    Ranjith-Kumar, C.T.3    Brooks, M.T.4    Hou, T.Y.5
  • 42
    • 77954386541 scopus 로고    scopus 로고
    • Structural and functional insights into 5′-ppp RNA pattern recognition by the innate immune receptor RIG1
    • Wang Y, Ludwig J, Schuberth C, Goldeck M, Schlee M, et al. (2010) Structural and functional insights into 5′-ppp RNA pattern recognition by the innate immune receptor RIG1. Nat Struct Mol Biol 7: 781-787.
    • (2010) Nat Struct Mol Biol , vol.7 , pp. 781-787
    • Wang, Y.1    Ludwig, J.2    Schuberth, C.3    Goldeck, M.4    Schlee, M.5
  • 43
    • 77956103055 scopus 로고    scopus 로고
    • Quantitative expression of RIG-like helicase, NOD-like receptor and inflammasome-related mRNAs in humans and mice
    • Lech M, Ferrufino AA, Skuginna V, Susanti HE, Anders HG (2010) Quantitative expression of RIG-like helicase, NOD-like receptor and inflammasome-related mRNAs in humans and mice. Int Immunol 22: 717-728.
    • (2010) Int Immunol , vol.22 , pp. 717-728
    • Lech, M.1    Ferrufino, A.A.2    Skuginna, V.3    Susanti, H.E.4    Anders, H.G.5
  • 44
    • 79952446076 scopus 로고    scopus 로고
    • Characterization and antiviral function of a cytosolic sensor gene, MDA5, in Japanese flounder, Paralichthys olivaceus
    • Ohtani M, Hikima J, Kondo H, Hirono I, Jung TS, et al. (2011) Characterization and antiviral function of a cytosolic sensor gene, MDA5, in Japanese flounder, Paralichthys olivaceus. Dev Comp Immunol 35: 554-562.
    • (2011) Dev Comp Immunol , vol.35 , pp. 554-562
    • Ohtani, M.1    Hikima, J.2    Kondo, H.3    Hirono, I.4    Jung, T.S.5
  • 46
    • 29144501207 scopus 로고    scopus 로고
    • The interferon response circuit: Induction and suppression by pathogenic viruses
    • DOI 10.1016/j.virol.2005.09.024, PII S0042682205005817
    • Haller O, Kochs G, Weber F (2006) The interferon response circuit: induction and suppression by pathogenic viruses. Virol 344: 119-130. (Pubitemid 41814456)
    • (2006) Virology , vol.344 , Issue.1 , pp. 119-130
    • Haller, O.1    Kochs, G.2    Weber, F.3
  • 47
    • 84861330800 scopus 로고    scopus 로고
    • MAVS ubiquitination by the E3 ligase TRIM25 and degradation by the proteasome is involved in type I interferon production after activation of the antiviral RIG1-like receptors
    • Castanier C, Zemirli N, Portier A, Garcin D, Bidere N, et al. (2012) MAVS ubiquitination by the E3 ligase TRIM25 and degradation by the proteasome is involved in type I interferon production after activation of the antiviral RIG1-like receptors. BMC Biol 10: 44.
    • (2012) BMC Biol , vol.10 , pp. 44
    • Castanier, C.1    Zemirli, N.2    Portier, A.3    Garcin, D.4    Bidere, N.5
  • 48
    • 84866461846 scopus 로고    scopus 로고
    • Foreign RNA induces the degradation of mitochondrial antiviral signaling protein (MAVS): The role of intracellular antiviral factors
    • Xing F, Matsumiya T, Onomoto K, Hayakari R, Imaizumi T (2012) Foreign RNA induces the degradation of mitochondrial antiviral signaling protein (MAVS): the role of intracellular antiviral factors. PLoS ONE 7: e45136.
    • (2012) PLoS ONE , vol.7
    • Xing, F.1    Matsumiya, T.2    Onomoto, K.3    Hayakari, R.4    Imaizumi, T.5
  • 49
    • 77953633063 scopus 로고    scopus 로고
    • Synoviocyte innate responses: II Pivotal role of interferon regulatory factor 3
    • Sweeney SE, Kimbler TB, Firestein GS (2010) Synoviocyte innate responses: II Pivotal role of interferon regulatory factor 3. J Immunol 184: 7162-7168.
    • (2010) J Immunol , vol.184 , pp. 7162-7168
    • Sweeney, S.E.1    Kimbler, T.B.2    Firestein, G.S.3
  • 50
    • 33646592188 scopus 로고    scopus 로고
    • The Specific and Essential Role of MAVS in Antiviral Innate Immune Responses
    • DOI 10.1016/j.immuni.2006.04.004, PII S1074761306002202
    • Sun Q, Sun L, Liu HH, Chen X, Seth RB, et al. (2006) The specific and essential role of MAVS in antiviral innate immune responses. Immunity 24: 633-642. (Pubitemid 43728147)
    • (2006) Immunity , vol.24 , Issue.5 , pp. 633-642
    • Sun, Q.1    Sun, L.2    Liu, H.-H.3    Chen, X.4    Seth, R.B.5    Forman, J.6    Chen, Z.J.7
  • 52
    • 66049088727 scopus 로고    scopus 로고
    • ISG56 is a negative-feedback regulator of virus-triggered signaling and cellular antiviral response
    • Li Y, Li C, Xue P, Zhong B, Mao AP, et al. (2009) ISG56 is a negative-feedback regulator of virus-triggered signaling and cellular antiviral response. Proc Natl Acad Sci USA 106: 7945-7950.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 7945-7950
    • Li, Y.1    Li, C.2    Xue, P.3    Zhong, B.4    Mao, A.P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.